CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134304	Staphylococcus schweitzeri strain NCTC13712 genome assembly, chromosome: 1	4 crisprs	cas3,DEDDh,DinG,csa3,WYL	2	3	8	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134304_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134304_1

60702-60781

Orphan

Consensus_repeat	Method
TTACAATAATGTGCAAGTTGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134304_1

>merge|LR134304|1|60702-60781|CRISPRCasFinder
TTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGACGAAAAGTCAGTTTACAATAATGTGCAAGTTGGGGT

>LR134304|1|1|60702-60781|CRISPRCasFinder
TTACAATAATGTGCAAGTTGGCGG	GGCCCCAACATAGAAGCTGACGAAAAGTCAGT
TTACAATAATGTGCAAGTTGGGGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134304.1\|VEE64682.1\|59381_60560_+\|Uncharacterized-hydrolase-YxeP	unknown	unknown	gnl\|CDD\|349941
LR134304.1\|VEE64690.1\|70193_70667_+\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|377929
LR134304.1\|VEE64685.1\|62049_63108_+\|Thiosulfate-sulfurtransferase-PspE-precursor	unknown	unknown	gnl\|CDD\|379334
LR134304.1\|VEE64679.1\|56096_56426_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134304.1\|VEE64674.1\|50915_51902_+\|1-phosphatidylinositol-phosphodiesterase-precursor	unknown	unknown	gnl\|CDD\|176528
LR134304.1\|VEE64687.1\|64487_65681_+\|Sulfide-dehydrogenase-[flavocytochrome-c]-flavoprotein-chain-precursor	unknown	unknown	gnl\|CDD\|223523
LR134304.1\|VEE64678.1\|54723_56100_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|224561
LR134304.1\|VEE64692.1\|72824_74372_-\|Staphylococcal-protein-A	unknown	unknown	gnl\|CDD\|334852
LR134304.1\|VEE64680.1\|56429_56741_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134304.1\|VEE64683.1\|60898_61657_-\|Sulfite-exporter-TauE/SafE	unknown	unknown	gnl\|CDD\|376667
LR134304.1\|VEE64676.1\|52957_53728_+\|Staphylococcus-tandem-lipoproteins	unknown	unknown	gnl\|CDD\|367972
LR134304.1\|VEE64688.1\|66071_67739_-\|Na/Pi-cotransporter-II-related-protein	unknown	unknown	gnl\|CDD\|224202
LR134304.1\|VEE64691.1\|70928_72521_+\|Glycolate-permease-glcA	unknown	unknown	gnl\|CDD\|224535
LR134304.1\|VEE64677.1\|54028_54721_+\|Staphylococcus-tandem-lipoproteins	unknown	unknown	gnl\|CDD\|367972
LR134304.1\|VEE64675.1\|52122_52893_+\|Staphylococcus-tandem-lipoproteins	unknown	unknown	gnl\|CDD\|367972
LR134304.1\|VEE64689.1\|68057_69833_-\|Oleate-hydratase	unknown	unknown	gnl\|CDD\|227060
LR134304.1\|VEE64686.1\|63137_64472_+\|Probable-polyketide-biosynthesis-zinc-dependent-hydrolase-pksB	unknown	unknown	gnl\|CDD\|293810
LR134304.1\|VEE64673.1\|50226_50709_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134304.1\|VEE64684.1\|61653_61914_-\|Copper-sensitive-operon-repressor	unknown	unknown	gnl\|CDD\|197390
LR134304.1\|VEE64681.1\|56993_59231_+\|Bacillibactin-transport-regulator	unknown	unknown	gnl\|CDD\|226190

Protein	Function_ID	Function_description	E-value
LR134304.1\|VEE64682.1\|59381_60560_+\|Uncharacterized-hydrolase-YxeP	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	0
LR134304.1\|VEE64690.1\|70193_70667_+\|Predicted-membrane-protein	gnl\|CDD\|377929	pfam07853, DUF1648, Protein of unknown function (DUF1648). Members of this family are hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and in fact many of these sequences contain a high proportion of hydrophobic residues.	3.31014e-08
LR134304.1\|VEE64674.1\|50915_51902_+\|1-phosphatidylinositol-phosphodiesterase-precursor	gnl\|CDD\|176528	cd08586, PI-PLCc_BcPLC_like, Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which contains a single TIM-barrel type catalytic domain, X domain. They are similar to bacterial PI-PLCs, and distinct from typical eukaryotic PI-PLCs, which have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains, and strictly require Ca2+ for their catalytic activities. The prototype of this family is Bacillus cereus PI-PLC, which has a moderate thermal stability and is active as a monomer.	8.08369e-90
LR134304.1\|VEE64687.1\|64487_65681_+\|Sulfide-dehydrogenase-[flavocytochrome-c]-flavoprotein-chain-precursor	gnl\|CDD\|223523	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].	2.11709e-35
LR134304.1\|VEE64689.1\|68057_69833_-\|Oleate-hydratase	gnl\|CDD\|227060	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown].	0
LR134304.1\|VEE64678.1\|54723_56100_+\|Uncharacterised-protein	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	0.000945568
LR134304.1\|VEE64683.1\|60898_61657_-\|Sulfite-exporter-TauE/SafE	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.29487e-22
LR134304.1\|VEE64676.1\|52957_53728_+\|Staphylococcus-tandem-lipoproteins	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	5.37991e-132
LR134304.1\|VEE64688.1\|66071_67739_-\|Na/Pi-cotransporter-II-related-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	0
LR134304.1\|VEE64691.1\|70928_72521_+\|Glycolate-permease-glcA	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	0
LR134304.1\|VEE64677.1\|54028_54721_+\|Staphylococcus-tandem-lipoproteins	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	1.38536e-124
LR134304.1\|VEE64675.1\|52122_52893_+\|Staphylococcus-tandem-lipoproteins	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	4.24399e-126
LR134304.1\|VEE64692.1\|72824_74372_-\|Staphylococcal-protein-A	gnl\|CDD\|334852	pfam02216, B, B domain. This family contains the B domain of Staphylococcal protein A, which specifically binds to the Fc portion of immunoglobulin G.	9.13834e-17
LR134304.1\|VEE64686.1\|63137_64472_+\|Probable-polyketide-biosynthesis-zinc-dependent-hydrolase-pksB	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	8.61419e-73
LR134304.1\|VEE64685.1\|62049_63108_+\|Thiosulfate-sulfurtransferase-PspE-precursor	gnl\|CDD\|379334	pfam13686, DrsE_2, DsrE/DsrF/DrsH-like family. DsrE is a small soluble protein involved in intracellular sulfur reduction. The family also includes YrkE proteins.	6.06954e-69
LR134304.1\|VEE64684.1\|61653_61914_-\|Copper-sensitive-operon-repressor	gnl\|CDD\|197390	cd10155, BsYrkD-like_DUF156, Uncharacterized protein YrkD from Bacillus subtilis and related domains; this domain superfamily was previously known as part of DUF156. This domain family contains an uncharacterized protein YrkD from Bacillus subtilis and related proteins. This family is part of a larger superfamily that contains various transcriptional regulators that respond to different stressors such as Cu(I), Ni(I), sulfite, and formaldehyde, and includes CsoRs (copper-sensitive operon repressors). CsoRs form homotetramers (dimer of dimers). In Mycobacterium tuberculosis CsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily. In this family, however, not all these residues are conserved, there is an Asn instead of the His (C-N-C); also a conserved Tyr and a Glu residue that facilitates allosteric regulation of DNA binding for CsoRs are very poorly conserved.	5.36474e-32
LR134304.1\|VEE64681.1\|56993_59231_+\|Bacillibactin-transport-regulator	gnl\|CDD\|226190	COG3664, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].	6.27854e-169

>LR134304.1|VEE64682.1|59381_60560_+|Uncharacterized-hydrolase-YxeP
MNQQLIEALKSKEDKMIEIRRYLHQHPELSFHEDETAKYITEFYKGKDVEVETNVGPRGIKVTIDSGKPGKTLAIRADFDALPITEDTGLTFASQNKGVMHACGHDAHTAYMLVLAETLAEMKDIFTGKVVVIHQPAEEVPPGGAKAMIENGVLDGVDHVLGVHVMSTMETGNVYYRPGYVQTGRAFFKLKVQGKGGHGSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTIGSFDGKGQFNVIKDVVEIEGDVRGLTDATKATIEKEIKRLSKGLEALYGVTCTLEYHDDYPALYNDPEFTEYVAKTLKESDLEFGVEMCEPQPPSEDFAYYAKERPSAFIYTGAAVENGEIYPHHHPKFNISEKSLLISAEAVGTVVLDYLKGDN
>LR134304.1|VEE64681.1|56993_59231_+|Bacillibactin-transport-regulator
MQRDYLIRVETESMSDFKRLNGLMIGFVIKGEAHIYDENNMTQCNSGDIFIINHRDLYRFQLQQDGIICYIQFQMKYLADKFDDVHCLYFHLTDATTTKNIHQLRNIMARLVLTHIRHNELSKLTEQQLVIQLLMHMIHYVPRTYHSNQSILNDDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFAESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPKQYRGDRPAITENQQSAQHDYHDRELILLLNDYIEEMNHFIEDIEKVNYKEITFQPTNQQLNQFNHIIQVGYLRNLLNTQYQSQLLTCHHDFHVNEVIVYDVMPYIMKKLNAPFTYDAEISNIFYDIDLCLDFLLDYNFSLTMHLDQYDSSDYIDAFKVFIHHVALHVSHRKDLKFNLYVTTLHTSLIEMIDYFKALFPNGGLYIHLDQATERRLPLLKRLEPHIDHFVFDANSNDAVDFNKMNDDEFKTASQMIINKTNYLIDLVHRHNLKRPLILLNWNTLTGDTFITNGEYFRGGIIIEQLLKLSSKVEGIGYWLNYDLHVSHCRNERDYMNSIELFHQYNGKRPVYFTALLFNKLTSNILYSDDTCVVTGTDSNFQILLYDAKHFNPYLALDNQMNMRATEMIHLNINALEEGMYKIKHFTLDKENGALFNLWRKHHTIHGMDKDSIDYVNRMSFPKLEVYDIDVTDTLALNIKMITNGIHLIEVKRYPSS
>LR134304.1|VEE64680.1|56429_56741_+|Uncharacterised-protein
MGIPDPLSIRMSNPLLGDSWMVGDLKKRQEKRLITTVIAPEHDEKHRENKSKMKKSEKQLINQLINHGHTFRNDFKNVAKGDWVNKAMQDLDKLGNELKKMMN
>LR134304.1|VEE64679.1|56096_56426_+|Uncharacterised-protein
MIFEDYKKMDDLENAYEIELKRIDREMQNLNELKYHLRRENEQSYDAFLYLKNKMNYSEESNAKVRRLVEEFDYEANSYIRQKELKLEDYKEEIRREYIQQSEKIREAK
>LR134304.1|VEE64678.1|54723_56100_+|Uncharacterised-protein
MTKNEYKIDPGKITSNTEATSAIANISYEIENANDNGLEKEKINGQINSLKNDGDFPKNLDYIDSYTDPSTGTTATAFLNKDTGKVTVGMAGTNFHGDQLKRVALSSMSPLLFPPSNQDVKDVLGTMKDGVADLAIGVGMVNYKGKHFANTQQFIENLQKKYEIDTVTGHSLGGRDAIFLGLRFNIKNVVAYNPAPLEVKSLRNKLGGQLFRNTTFPDEKYLKELMDNYDGDITKVITQKDGLDYLVKHTDHLTYGDVLRINNGQGHAMENFLGEKEQREIIEELMLVKGYRDANDKAFKALKKNTEKKLGKIDEIKSKLLQTNGGALSSSQQKLLETLVAFSVAEGLSKMVDQELQQLKNMFNLMDEKFEANWKDAQEASDIVGKHLSYSEKVSALDDGGVNESKLASEPHNEIKDKLNKITDLSKKYNSYLKKIEKSINEIVAKDQQLAGQIGDLI
>LR134304.1|VEE64677.1|54028_54721_+|Staphylococcus-tandem-lipoproteins
MGKEEEIKKSFEKTLSMYPIKNLEDLYDKEGYRDDEFDKNDKGTWTISSEMAIQKKGEALNIKGMVLKLNRNTRSAKGFYYVNAIKKDEDGRPQDNQIEYPVKMVDNKIIPTKEIKDENIKKEIENFKFFVQYGNFKDLSKYKDGDISYNPEAPIYSAKYQLTNDDYNVKQLRKRYNIPTNKAPKLLLKGSGNLKGSSVGYKKIEFTFVEKKGENTYFTSNLHFKPSEDE
>LR134304.1|VEE64676.1|52957_53728_+|Staphylococcus-tandem-lipoproteins
MMKRLNKLVLYISFLILIISIVAGCGMGKEAEIKKSFEKTLSMYPIKNLEDLYDKEGYRDDEFDKNDKGTWIIGSEMATQNKGEALKVKGMVLYMNRNTRSAKGFYYVNAVKKDEDGRPQDNKIEYPVKMVDNKIIPTKDIKDEKIKNEIENFKFFAQYGNFKDLKKYKDGDISFNPEVPSYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGSGDLKGSSVGYKDVEFTFVEKKGENTFFTDSLHLEPSEDK
>LR134304.1|VEE64675.1|52122_52893_+|Staphylococcus-tandem-lipoproteins
MMKRLNKLVLGIIFLFLVISITAGCGIGKEAEIKKSFEKTLSMYPIKNLEDLYDKEGYHDDEFDKNDKGTWVVRSSMSIQPKGKDMNVKGMVIYMNRNTRTTNGYYYVDVIEREDKSIHRDNEKRYPVKMVDNKIMPTKEIKDKNIKKEIENFKFFAQYGNFKDLSKYKDGDISNNPEVPNYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLEGSSIGYKKIEFTFVEKKGENIYFSDGLHFNPSEDK
>LR134304.1|VEE64674.1|50915_51902_+|1-phosphatidylinositol-phosphodiesterase-precursor
MKKCIKTLFLSIILVVMSGLYHSAHASDSLSKSPENWMSKLDESKHLTEINMPGSHDSGSFTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDPKVTKTFEEVFREYYYNNPQYQNLFYTGNNANPTLKETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGNLNLQVQDEYNDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYNYASHINPEIAKTIKANGKARTGWLIVDYAGYPWTGYDDIVSEIIDSNK
>LR134304.1|VEE64673.1|50226_50709_+|Uncharacterised-protein
MKKFNNWILNAISGSQKDKNGTTEELKGAKFIILYAYSMLVLLALVISNIFIHILEPKLSITTQIIIVLILIESLIGLRFLKVYDVRRGKDKENKKNSKDFVKLKSILVAILFTSLALTAGTVADIYGVDDLGNTRSDLIVWSIGGIIFGLVCYTMEDKK
>LR134304.1|VEE64683.1|60898_61657_-|Sulfite-exporter-TauE/SafE
MIDVTTIFVMLTIGMVGGFISGLVGIGGAIIIYPAILLLPSLFGTHEYTPYLASGLTSSQVFFSTMSGSLKAYKKDGFSKKLVLNMGSGMIFGSILGAILANFFNSAFINFVYIFIALLSLVFMSINIKPTSEHDKFNSTLIVIVGIVIGILSGIVGAGGAFIIIPVLLVLFKLPMDTVVVNSIVIAFMSSIGTFTIKLFQGYIPIESAIFLIISGAIFAPLGLKVGNKIPDVIQKWIVSTLIILAIIQLLF
>LR134304.1|VEE64684.1|61653_61914_-|Copper-sensitive-operon-repressor
MAYNKQMVNRIKRVQGQLNGVIKMMEEEKNCKDVIGQLSASKSSIQRLMGIIISENLVECVKQAEANNEDSQTLINEAVNLLVKSK
>LR134304.1|VEE64685.1|62049_63108_+|Thiosulfate-sulfurtransferase-PspE-precursor
MTHYKTKHISEFSKEQLEKLAANEQLIDVRHLEEYELGHINNAILHPVENITTFNHQKNKTYYVYCKSGNRSVQASEYLTQHGYEVVNLDGGYTAFRELNIDSTQSLDTGVKDNRKIFNYSQLQCPGPIVNISKEIKRINVGEQIEVTVTDFGFLSDIKSWAKQTGHTLVKLDEYNDYIQAIIQKENPKDKQVNRSMNGTTIVLFSGELDKAMAALIIANGARAAGKDVTIFFTFWGLNALKNAKTAKVKKKGIAKLFNLILPSTPTRMPISKMNMFGLGSLMMKRVMKQKNVDSLSSLIEQAVDQNIKLIACTMSMDVMGITKEDLIDSVEYGGVGTYIGDTEQSNHNLFI
>LR134304.1|VEE64686.1|63137_64472_+|Probable-polyketide-biosynthesis-zinc-dependent-hydrolase-pksB
MFFKQFYDNHLSQASYLIGCQRTGEAIIIDPVRDLTKYIKIADAEGLTITHAAETHIHADYASGIRDVAKKLNANIYVSGEGEVTLGYKNMPESTYFVRHNDDISIGNIKLKVLHTPGHTPESVSYLLTDEGGGSNVPMGLFSGDFIFVGDIGRPDLLEKAVQIHGSTEVGAKEMFQSIKSIEKLPDFIQIWPGHGAGSPCGKSLGAVPTSTLGYERENNWAFNETDELAFVKKLTSNQPAPPHHFAQMKKINQFGMELYQPYQVYPTANTQKLTFDLRSKEAYHGGHIRGTINVPYNKSFINQIGWYLDYNEEINLIGDKTTVEQATHTLQLIGFDSVSGYLLPKSEVQTQSIHSKDITGHELYVLDVRNDSEWNNGHLDQAVHIPHGKLLETNIPFKEENPIYVHCQSGVRSSIAIGILESKGYSNIINVSEGHNGFPSSLK
>LR134304.1|VEE64687.1|64487_65681_+|Sulfide-dehydrogenase-[flavocytochrome-c]-flavoprotein-chain-precursor
MTQHYKIVIVGGGTAGITVAAQLLRKNNKLKGDIAIIDPADYHYYQPLWTLVGAGVSKLDSTRKKMKDVIPRYASWLQQPVQQFFPESNHIQLANKEKLKYDYLVICPGLQINWSDVKGLKENIGKNGVCSNYSPKYVNETWKQIANFKGGNAIFTNPDTPIKCGGAPMKIMYLAEDYFRKNHVRTKTNVIFETAKPAIFDVDKYRKPLEQIIEERNIKVDYQHHLIEIDGENKQATFENLQSGETKTLDYTMLHVTPPMGPLNVIKNSSLSDSLGWVDVNHTTMQHQKYDNIFSLGDACNAPTSKTGAAIRKQAPVVVNNLLQAMNDDMLTHHYDGYTSCPIVTSYNTMMLAEFDYNKKPRESMPFNQAKERRSMYLFKKEILPRMYWYGMLKGLM
>LR134304.1|VEE64688.1|66071_67739_-|Na/Pi-cotransporter-II-related-protein
MEMSVTEVIFSFLGGLGIFLYGLKIMGDGLQASAGDRLRDILNKFTSNPVLGVIAGIVVTILIQSSSGTTVITIGLVTAGFMTLKQAIGVIMGANIGTTVTAFIIGIDLGEYAMPILALGAFLIFFFKRSKINNIGRILFGFGSLFFGLEFMGDAVKPLASLDGFKQLMLDMSSNPILAVIVGAGLTALVQSSSATIGILQEFYQQDLISLNAAIPVLLGDNIGTTITAILASLAGSIAAKRAALVHVIFNLIGVIIFTIFLPVVIHLISLLQDVWHLKPAMTIAVSHGIFNITNTLIQLPFVAGLAWIVTKLVPGKDIADDYKPQHLNKDLVYHAPGVALQETQKELQNVGQIVLSMFEDIREITKDDKKLIKKLEQKHQAVETINDSIRNYLVRISTKAITKADVERLAVMFDVNRSILKVAELTEEYVAQLKRQHDEDIRITEDAQRGMDKLFNHVAESFDKAIDMLDVYDKTKKDEIVERSKESFNIEHKLRKGHIKRLNRGECTTKGGLLYIDMIGVLERIGYHSRNVSEALVGLNNDVPTDEEIATTEI
>LR134304.1|VEE64689.1|68057_69833_-|Oleate-hydratase
MYYSYGNYEAFARPKKPENVENKSAYLIGSGLASLAAACFLIRDGQMEGSKIHILEELPKAGGSLDGENIPLKGYVVRGGREMENHFECLWDLFRSIPSLEIDNASVLDEFYWLNKEDPNYSRCRVIEKQGQRLVTDGDFTLTKKAIKEILDLCLTNEEDLDDVKITDVFSDDFFNSNFWIYWKTMFAFEPWHSAMEMRRYLMRFVHHIGGLADFSALKFTKYNQYESLVLPMVEYLKSHGVQFEYDVKVEDIKVDVTTSQKIAREILVHRNGKAESIKLTVNDLVFVTNGSITESTTYGDNNTPAPPTDELGGSWTLWKNLARQSPEFGNPDKFCQNIPQKSWFVSATSTTNNKDIIDTIESICKRDPLAGKTVTGGIITINDSTWQISFTINRQQQFKDQPKDEISTWIYALYSDVNGDFIKKPITECSGNEICQEWLYHLGVPTDKIEDLAKHASNTIPVYMPYITSYFMTRAIGDRPLVVPHQSQNLAFIGNFAETERDTVFTTEYSVRTAMEAVYQLLNIDRGVPEVINSTFDLRVLMDAVYELNDHQDLREITKDSKMQKLALAGFLKKVKGTYIETLLKEHKLL
>LR134304.1|VEE64690.1|70193_70667_+|Predicted-membrane-protein
MSKIKFFTVLSLLIYLAMMCYTVVNYSKLPTKVPIHYNLAGDADNFADKWVLLLINGAFIMIWFIFFVAGRYYERFAKWSHYNHTSREIRAIKLFLSTLNLEIMSYISIFTVLEIWQIQHHHQLNLLWFNMVFIIIIGLTLVIFCLLPTIHKMRDSQ
>LR134304.1|VEE64691.1|70928_72521_+|Glycolate-permease-glcA
MTLLTVNPFDNVGLSALVAAVPIILFLLCLTVFKMKGIYAALTTLVVTLIVALFVFELPARVSAGAITEGVVAGIFPIGYIVLMAVWLYKVSIKTGQFSIIQDSIASISEDQRIQLLLIGFCFNAFLEGAAGFGVPIAICAVLLIQLGFEPLKAAMLCLIANGAAGAFGAIGLPVSIIDTFNLSGGVTTLDVARYSALTLPILNFIIPFVLVFVVDGMKGIKEILPVILTVSGTYTGLQLLLTIFHGPELADIIPSLATMVVLAFVCRKFKPKNIFRLEASEHKIQKRTPKEIVFAWSPFVILTAFVLVWSAPFFKKLFQPGGALESLVIKLPIPNTVSDLSPKGIALRLDLIGATGTAILLTVIITILITKLKWKSAGALLVEAFKELWLPILTISAILAIAKVMTYGGLTVAIGQGIAKAGAIFPLFSPVLGWIGVFMTGSVVNNNTLFAPIQATVAQQISTSGSLLVAANTAGGVAAKLISPQSIAIATAAVKKVGEESALLKMTLKYSIIFVAFICVWTFILTLIF
>LR134304.1|VEE64692.1|72824_74372_-|Staphylococcal-protein-A
MKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAKKLNDSQAPKAEAQQNNFNKDQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNKDQQNAFYEILNMPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNESQAPKADNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSVSKEILAEAKKLNDAQAPKDEDNKPGKEDGNKPGKEDNNKPGKEDNNKPGKEDGNKPGKEDGNKPGKEDGNKPGKEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPGKEDDNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNIIKPGQELVVDKKQPANHADANKAKALPETGEENPFIGTTVFGGLSLALGAALLAGRRREL

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Click the colored protein region to show detailed information

Crispr_ID: LR134304_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134304_2

302109-302192

Orphan

Consensus_repeat	Method
TGTTGAGGCCCACACCCCAACTCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134304_2

>merge|LR134304|2|302109-302192|CRISPRCasFinder
TGTTGAGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTTTGTTGGGGCCCACACCCCAACTCGCA

>LR134304|2|2|302109-302192|CRISPRCasFinder
TGTTGAGGCCCACACCCCAACTCGCA	TTGCCTGTAGAATTTCATTTCGAAATTCTCTT
TGTTGGGGCCCACACCCCAACTCGCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134304.1\|VEE64880.1\|298635_299460_-\|Formate-channel-1	unknown	unknown	gnl\|CDD\|225027
LR134304.1\|VEE64881.1\|299697_301005_-\|LIV-II	unknown	unknown	gnl\|CDD\|224039
LR134304.1\|VEE64889.1\|308946_310167_+\|Nucleoside-transport-system-protein-nupC	unknown	unknown	gnl\|CDD\|224883
LR134304.1\|VEE64877.1\|296342_296831_+\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|130802
LR134304.1\|VEE64874.1\|294809_295310_+\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|130802
LR134304.1\|VEE64891.1\|311887_312769_-\|N-acetylneuraminate-lyase	unknown	unknown	gnl\|CDD\|179749
LR134304.1\|VEE64887.1\|306919_308038_+\|Pseudouridine-kinase	unknown	unknown	gnl\|CDD\|238916
LR134304.1\|VEE64888.1\|308012_308936_+\|Pseudouridine-5'-phosphate-glycosidase	unknown	unknown	gnl\|CDD\|377251
LR134304.1\|VEE64873.1\|293554_294238_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|374866
LR134304.1\|VEE64890.1\|310315_311848_-\|Na(+)/glucose-symporter	unknown	unknown	gnl\|CDD\|271386
LR134304.1\|VEE64882.1\|301279_301804_+\|Putative-metal-dependent-hydrolase-yfiT	unknown	unknown	gnl\|CDD\|183954
LR134304.1\|VEE64875.1\|295320_295803_+\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|130802
LR134304.1\|VEE64883.1\|302476_303367_+\|Outer-membrane-protein-P4	unknown	unknown	gnl\|CDD\|273674
LR134304.1\|VEE64878.1\|297465_297840_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|291399
LR134304.1\|VEE64884.1\|303601_304651_+\|acidobacterial-duplicated-orphan-permease	unknown	unknown	gnl\|CDD\|226957
LR134304.1\|VEE64876.1\|295831_296332_+\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|130802
LR134304.1\|VEE64886.1\|305546_306578_+\|Predicted-membrane-protein,-putative-toxin-regulator	unknown	unknown	gnl\|CDD\|379113
LR134304.1\|VEE64892.1\|312926_313787_+\|Beta-glucoside-kinase	unknown	unknown	gnl\|CDD\|224851
LR134304.1\|VEE64885.1\|304663_305341_+\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|224059
LR134304.1\|VEE64879.1\|297989_298388_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372544

Protein	Function_ID	Function_description	E-value
LR134304.1\|VEE64880.1\|298635_299460_-\|Formate-channel-1	gnl\|CDD\|225027	COG2116, FocA, Formate/nitrite family of transporters [Inorganic ion transport and metabolism].	9.28021e-74
LR134304.1\|VEE64881.1\|299697_301005_-\|LIV-II	gnl\|CDD\|224039	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism].	1.09385e-166
LR134304.1\|VEE64889.1\|308946_310167_+\|Nucleoside-transport-system-protein-nupC	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	1.12877e-150
LR134304.1\|VEE64877.1\|296342_296831_+\|Uncharacterized-conserved-protein	gnl\|CDD\|130802	TIGR01741, staph_tand_hypo, conserved hypothetical protein. This model represents a tandem array of 10 proteins in Staphylococcus aureus and the C-terminal region of one protein each in Bacillus subtilis and Bacillus halodurans.	1.99298e-78
LR134304.1\|VEE64874.1\|294809_295310_+\|Uncharacterized-conserved-protein	gnl\|CDD\|130802	TIGR01741, staph_tand_hypo, conserved hypothetical protein. This model represents a tandem array of 10 proteins in Staphylococcus aureus and the C-terminal region of one protein each in Bacillus subtilis and Bacillus halodurans.	5.13093e-67
LR134304.1\|VEE64891.1\|311887_312769_-\|N-acetylneuraminate-lyase	gnl\|CDD\|179749	PRK04147, PRK04147, N-acetylneuraminate lyase; Provisional.	0
LR134304.1\|VEE64887.1\|306919_308038_+\|Pseudouridine-kinase	gnl\|CDD\|238916	cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.	2.10675e-118
LR134304.1\|VEE64888.1\|308012_308936_+\|Pseudouridine-5'-phosphate-glycosidase	gnl\|CDD\|377251	pfam04227, Indigoidine_A, Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.	0
LR134304.1\|VEE64873.1\|293554_294238_+\|Uncharacterised-protein	gnl\|CDD\|374866	pfam16882, DUF5079, Domain of unknown function (DUF5079). This protein is believed to be involved in the type VII secretion system.	1.71012e-89
LR134304.1\|VEE64890.1\|310315_311848_-\|Na(+)/glucose-symporter	gnl\|CDD\|271386	cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain. Proteins belonging to the same subfamily as this uncharacterized subgroup include i) NIS, which transports I-, and other anions including ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin, pantothenic acid and lipoate, and iii) the Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1 is a high-affinity transporter while SMCT2 is a low-affinity transporter. This subgroup belongs to the solute carrier 5 (SLC5) transporter family.	0
LR134304.1\|VEE64882.1\|301279_301804_+\|Putative-metal-dependent-hydrolase-yfiT	gnl\|CDD\|183954	PRK13291, PRK13291, putative metal-dependent hydrolase.	2.8286e-67
LR134304.1\|VEE64875.1\|295320_295803_+\|Uncharacterized-conserved-protein	gnl\|CDD\|130802	TIGR01741, staph_tand_hypo, conserved hypothetical protein. This model represents a tandem array of 10 proteins in Staphylococcus aureus and the C-terminal region of one protein each in Bacillus subtilis and Bacillus halodurans.	5.4262e-80
LR134304.1\|VEE64883.1\|302476_303367_+\|Outer-membrane-protein-P4	gnl\|CDD\|273674	TIGR01533, Lipoprotein_E, 5'-nucleotidase, lipoprotein e(P4) family. This model represents a set of bacterial lipoproteins belonging to a larger acid phosphatase family (pfam03767), which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles. [Transport and binding proteins, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	2.88508e-116
LR134304.1\|VEE64878.1\|297465_297840_+\|Uncharacterised-protein	gnl\|CDD\|291399	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467). Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan.	2.82358e-22
LR134304.1\|VEE64884.1\|303601_304651_+\|acidobacterial-duplicated-orphan-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	1.07603e-11
LR134304.1\|VEE64876.1\|295831_296332_+\|Uncharacterized-conserved-protein	gnl\|CDD\|130802	TIGR01741, staph_tand_hypo, conserved hypothetical protein. This model represents a tandem array of 10 proteins in Staphylococcus aureus and the C-terminal region of one protein each in Bacillus subtilis and Bacillus halodurans.	2.31109e-68
LR134304.1\|VEE64886.1\|305546_306578_+\|Predicted-membrane-protein,-putative-toxin-regulator	gnl\|CDD\|379113	pfam13303, PTS_EIIC_2, Phosphotransferase system, EIIC. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.	6.21712e-62
LR134304.1\|VEE64892.1\|312926_313787_+\|Beta-glucoside-kinase	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	4.55905e-58
LR134304.1\|VEE64885.1\|304663_305341_+\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	6.60219e-95
LR134304.1\|VEE64879.1\|297989_298388_+\|Uncharacterised-protein	gnl\|CDD\|372544	pfam13273, DUF4064, Protein of unknown function (DUF4064).	9.8323e-07

>LR134304.1|VEE64882.1|301279_301804_+|Putative-metal-dependent-hydrolase-yfiT
MNVRFPIGQLKVPETITSAHIERWTNEINEYSSQLSSIVNYLDEEELNRTYREGAWTVRQLVHHIVDSQLNLYLRLKLALTDKEPYVSEFNQEQWAIQSDYDLPVQVSVDLLRNLNMRVVSLIKEISTTQFSRAFELQNTGRVTVGETIAKLSWHERHHLAHIQIALNQFNEEC
>LR134304.1|VEE64881.1|299697_301005_-|LIV-II
MKKQVIISGLMLFSLFFGAGNLIFPPMLGHTAGQNMWIGMLGFALTGILLPFITVIVVAFYDEGVESVGNRIHPWFGFIFAVVIYMSIGAFYGIPRAANVAYEIGTRHILPVHNQWTLIIFAAIFFAIVYWISLNPSKIVDNLGKLLTPLLLLMVALLSIAVIFNPESALSAPKDKYITHPFISGSLEGYFTMDLVAALAFSVVIVNGYKFKGLTDRMKILKYVCFSGFIAAILLGMIYFSLAYVGASTAPGSFKDGTDILTYNSLRVFGSFGNLVFGMTVILACLTTCIGLVNACATFTKKHVPKFSYKIFALIFSIIGFLFTTLGLEMILKIAVPLLTLIYPVSIALVLISFANMFSKFRFSWAYRLATVITLIISILQILNSFDLLHGVILKWFMMLPLADIDLAWLVPFILFAIIGFIIDVVIRRPKQATT
>LR134304.1|VEE64880.1|298635_299460_-|Formate-channel-1
MKEKHIKWDKIFYGDDWVNNVVETIRTKDILQSVYLKRYLLRAMMAGFIIGIITVFVLSVKATHEPDLPPGIVNMASAITFSFALVLILFTNSELLTSNFMYFTVGLYYKVIKPTRVLKIFLLCFAGNILGAAILFSFMRFSNVMTPDMLNQLSVVIEHKTLSTGFVSILMKAIFANFFINISLVIAMQIDDVLAKMFVMMFGVTIFAFMGYEHVVYNSCLFMGGLIYQVDTLHFIPAISNIAAAFIGNYIGGGLIIGLFYAYLNDHHQFNKNN
>LR134304.1|VEE64879.1|297989_298388_+|Uncharacterised-protein
MEKSVKIMTIIGISVLGLATVFNFLFMVLAASGVMTTDMSTTVDGEVNSLDPETAAAVYTVLFLFLFIFGIISLILGTIGMIKASKNKKMSGILLISGAVVSGNIITFVLWLISGIKLLTNNKPKDEISQLS
>LR134304.1|VEE64878.1|297465_297840_+|Uncharacterised-protein
MKRILIVFLMLAIVLAGCSNKGEKYQKDIDKVYKEQKQMNKDASKIQNTIKTDIKQEDSNTHVYKDGKVIVIGIQLFKDQKKMYYFAYDIKDGKAKINKEIDPIKYMKDHKADFEDENVEVKKD
>LR134304.1|VEE64877.1|296342_296831_+|Uncharacterized-conserved-protein
MTFEEKQSQMYNEIANEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTKPGSDELNYYSDIPKDCNVSKDIFKNSWFKVYRMFDELRNAFKEEGLEPWTSCEFDFTRDGKLNVSFDYIDWINTEFDQLGRENYYMYKKFGVIPEMEYEMEEIREVEKYVKEQE
>LR134304.1|VEE64876.1|295831_296332_+|Uncharacterized-conserved-protein
MTFEEKLSQMYNEIANKISSMIPVEWEKVYAMAYVNERSGEVFYNYTEPSSDELFYYTSVLNKYNIPRSEFMDSVYELYKQFDNLRELFIEEGLEPWTSCEFDFTRDGKLNVSFDYIDWMNSEFGPMGREDYYMYKKFGIWPEKEYAINRVKKIEDYIKEQEETEL
>LR134304.1|VEE64875.1|295320_295803_+|Uncharacterized-conserved-protein
MTFEEKLSEMYNEIANEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTKPGSEELNYYSDIPKDCNVLKDLFKNSWFKVYRMFDELREVFKKEGLEPWTSCEFDFTREGKLKVSFDYIDWINTEFDQLGRENYYMYKKFGVLPEMEYEMEEVKQIEQYIKE
>LR134304.1|VEE64874.1|294809_295310_+|Uncharacterized-conserved-protein
MTFEEKLSQMYNEIANEIDGMIPIEWEKIYAIAYVDDEGGEVVFNYTKPGSDELNYYTYIPREYSVSEKVFYDLWTDLYRLFKKLRNAFKEEDLEPWTSCEFDFTRDGKLNVLFDYVDWMNSEFGPLGREDYYMYKKFGIWPEKEYAINRVKKIEDYVKEQEEAEQ
>LR134304.1|VEE64873.1|293554_294238_+|Uncharacterised-protein
MTTKENIDILRKPGAQALSLASLFMILFSCLTFFFGLDYERFPNYLKITTIIELIIIIISLLQWIRFIDFEKESAQKYKKIYARFLVIINVLTTITAVFATCNLYYFVAVQNHYDLFNYWLMGTISIIISYLLLVIGGMFTLLKLPKVTKRWGGKTKTHFGLLLTALSAFIYIERIIEYILVPNVVESKFVIMVSIIIIACTQFVAFQFIMQYSRFYIFELNTENDD
>LR134304.1|VEE64883.1|302476_303367_+|Outer-membrane-protein-P4
MNKISKYIAIASLSVAVTVSAPQTTNSTAIAKSSAEVQQTQQASIPASQKVNLGNQNIMAVSWYQNSAEAKALYLQGYNSAKTQLDKEIKKNKGKHKLAIALDLDETVLDNSPYQGYASIHNKAFPEGWHEWVQAAKAKPVYGAKEFLKYADKKGVDIYYISDRDKEKDLKATQKNLKQQGIPQAKKSHILLKGKDDKSKESRRQMVQKNHKLVMLFGDNLLDFTDPKEATAESREALIEKHKDDFGKKYIIFPNPMYGSWEATIYNNNYKASDKAKDKLRKNSIKQFDPKTGEVK
>LR134304.1|VEE64884.1|303601_304651_+|acidobacterial-duplicated-orphan-permease
MFLAWNEIRRNKLKFGLIIGVLAMISYLLFLLSGLANGLINMNKEGIDKWHADAIVLNKDANQTVQQSIFNKKDIENKYKKQATLKQTGEIVSNGHQKDNVLVFGVEKSSFLVPSLIEGHKATKDNEVLADETLKNKGFNIGDTLTLSQSDEKLHIVGFTESAKYNASPVIFTNDATIAKINPRLTGDKINAVVVRDTNWKDKKLNQKLEAVSINDFIENLPGYKPQNLTLNFMISFLFVISATVIGIFLYVMTLQKTSLFGILKAQGFTNGYLANVVISQTLILALFGTTIGLLLTGVTGAFLPDAVPVKFDVLTLLIFAVVLMIVSVLGSLFSILTIKKIDPLKAIG
>LR134304.1|VEE64885.1|304663_305341_+|Lipoprotein-releasing-system-ATP-binding-protein-LolD
MLKFENVTKSFKDGNRTIEAVKDTNFEINKGDIIALVGPSGSGKSTFLTMAGALQTPTSGHILINNQDITTMKQKALSKVRMSEIGFILQATNLVPFLTVKQQFTLLKKKNKNVMSNEDYQQLMSQLGLTSLLNKLPSEISGGQKQRVAIAKALYTNPSIILADEPTAALDTENAIEVIKILRDQAKQREKACIIVTHDERLKAYCDRSYHMKDGVLNLEEEIAE
>LR134304.1|VEE64886.1|305546_306578_+|Predicted-membrane-protein,-putative-toxin-regulator
MDLLIGTLFLFLVLVIFTLFTYKAPNGMRAMGALANAAIATFLVEAFNKYVGGEVFGIKFLEELGDAAGGLGGVAAAGLTALAIGVSPVYALVIAAACGGMDLLPGFFAGYMIGYVMKYTEKYVPDGVDLIGSIVILAPLARLIAALLTPVVNSTLIRIGDIIQSSTNTNPIIMGIILGGIITVVGTAPLSSMALTALLGLTGVPMAIGAMAAFSSAFMNGTLFHRLKLGDRKSTIAVSIEPLSQADIVSANPIPIYITNFFGGAIAGLIIAMSGLINDATGTATPIAGFLVMFGFNHPTTIVIYGVVMAVVGALAGYLGSIVFKKYPIVTKQDMINRGAVDA
>LR134304.1|VEE64887.1|306919_308038_+|Pseudouridine-kinase
MSDSEKEILKRIKDNPFISQRELAEAIGLSRPSVANIISGLIQKEYVMGKAYVLNEDYPIVCIGAANVDRKFYVHKDLVAETSNPVTSTRSIGGVARNIAENLGRLGETVAFLSTSGQDSEWEMIKRLSTPFMNLDHVQQFENASTGSYTALISKEGDMTYGLADMEVFDYITPEFLIKRSHLLKKAKCIIVDLNLGKEALNFLCAYTTKHQIKLVITTVSSPKMKNMPDSLYAIDWIITNKDETETYLNLKIESTDDLKIAAKRWNDLGVENIIVTNGVKELIYRSGEEEIIKSVMPSNSVKDVTGAGDSFCAAVVYSWLNGMTTEDILIAGMVNAKKTIETKYTVRQNLDQQQLYHDMEDYKNGKFTKVY
>LR134304.1|VEE64888.1|308012_308936_+|Pseudouridine-5'-phosphate-glycosidase
MANLQKYIEYSREVQQARENNQPIVALESTIISHGMPYPQNVEMATTVEQIIRNNGAIPATIAIIDGKIKIGLESEDLEILATSKDVAKVSRRDLAEVVAMKRIGATTVATTMICAAMAGIQFFVTGGIGGVHKGAEHTMDISADLEELSKTNVTVICAGAKSILDLPKTMEYLETKGVPVIGYQTNELPAFFTRESGVKLTSSVETPERLADIHLTKQQLNLEGGIVVANPIPYEHALSKAYIEAIINEAVVESENQGIKGKDSTPFLLGKIVEKTNGKSLAANIKLVENNAALGAKIAVAVNKLL
>LR134304.1|VEE64889.1|308946_310167_+|Nucleoside-transport-system-protein-nupC
MSILFAITGIAFALFVAFLFSFDRKNIDFKKTLIMIFIQVLIVLFMMNTTIGLTILTALGSFFEGLINVSKAGINFVFGDIQNKNGFTFFLNVLLPLVFISVLIGIFNYIKVLPFIIKYVGIAINKITRMGRLESYFAISTAMFGQPEVYLTIKDIIPKLSKAKLYTIATSGMSAVSMAMLGSYMQMIEPKFVVTAVMLNIFSALIIASVINPYKSDDTDVEIDNLTKSTETKTLNGNTGKPKKVAFFQMIGDSAMDGFKIAVVVAVMLLAFISLMEAINIMFGSVGLNFKQLIGYVFAPIAFLMGIPWSEAVPAGSLMATKLITNEFVAMLDFKNVLGDVSARTQGIISVYLVSFANFGTVGIIVGSIKGISNKQGEKVASFAMRLLLGSTLASIISGSIIGLVL
>LR134304.1|VEE64890.1|310315_311848_-|Na(+)/glucose-symporter
MKEVGFGTLNWVAVIIYLLAMLFIGVYFTKRASQSTNSFFTASGRLPSWVVGFSIYATTLSAITFMSTPEKAFLTDWSYIAGNIAIVAIIPLLIYFYVPFFKKLKVTSAYEYLEARFSPSIRVIGSLLFVVYHLGRVAIVIYLPTLAITSVSDMNPYIVASLVGLLCILYTFLGGFEGVVWSDFIQGVILLGGALVIIILGIMHIKGGFGTVLADAIEHKKLISADNWKLNTAAAAIPIIFLGNIFNNLYQYTASQDVVQRYQASDSLKETNKSLWTNGILALISAPLFYGMGTMLYSFYAHEAVLPKGFNTSSVVPYFILTEMPPFVAGLLIAAIFAAAQSTISSSLNSISACISIDIKQRFFGKGSERHEVNFARLVIIIAGIFGFGMSLYLIASNSNDLWDLFLFVTGLFGVPLAGVFAVGIFTKRTNTFGVICGLILGIIFAYVYNGVGKGNSPFYVSTISFTVAFVFAYVLSFIAPSKHKKDITGLTIFEKDKPSTYISKTATKK
>LR134304.1|VEE64891.1|311887_312769_-|N-acetylneuraminate-lyase
MNKDLKGLYAALLVPFDENGQVNKQGLKQIAQNAIETEKLDGLYVNGSSGENFLLNTEQKKQVFKIAKEAVGDKVKLIAQVGSLDLNEAIELGKYATELGYDALSAVTPFYYPFTFEEIRDYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGVKYTAPNFFLLERIRKAFPDKLILSGFDEMLVQATISGVDGAIGSTYNVNGRRARQIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILRHRGIDAGLPKRPFKPFNETHRQTLDQLIAKYDL
>LR134304.1|VEE64892.1|312926_313787_+|Beta-glucoside-kinase
MYYIAIDIGGTQIKSAVIDKQMNMFDYQQMPTPNNKSELITDKVYEIVTRYMEKYHLIQPVIGISSAGVVDEQKGEIVYAGPTIPNYKGTNFKQLLKSLSPYVKVRNDVNAALLGELKLHQYQAERIFCMTLGTGIGGAYKNNQGHIDNGELHKANEIGYLLYRLTEGTTFEQRAATSALKKRMIEGGFTRSKHVPVLFEAADEGDDVAKRILNEWADDVAEGIAQIQIMYDPGLILIGGGISEQGDNLIKYIEPKVAHYLPIDYKYAPIQTTKSKNDAALYGCLQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR134304_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134304_3

1028087-1028172

Orphan

Consensus_repeat	Method
TAGAAATTGGGAACCCAATTTCTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134304_3

>merge|LR134304|3|1028087-1028172|CRISPRCasFinder
TAGAAATTGGGAACCCAATTTCTCTATGTATGGGGCCCCGCACCCCAACTTGTATTGCTTTTAGAAATTGGGAATCCAATTTCTCT

>LR134304|3|3|1028087-1028172|CRISPRCasFinder
TAGAAATTGGGAACCCAATTTCTCT	ATGTATGGGGCCCCGCACCCCAACTTGTATTGCTTT
TAGAAATTGGGAATCCAATTTCTCT

Protein	Signature genes	Signature genes Name	Protein_function
LR134304.1\|VEE65569.1\|1020892_1021009_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134304.1\|VEE65578.1\|1028955_1030149_-\|Staphopain-B-precursor	unknown	unknown	gnl\|CDD\|368490
LR134304.1\|VEE65577.1\|1028588_1028918_-\|Staphylococcal-cysteine-protease-B-inhibitor	unknown	unknown	gnl\|CDD\|370248
LR134304.1\|VEE65574.1\|1024536_1026210_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|224087
LR134304.1\|VEE65581.1\|1033007_1034018_-\|Fucose-4-O-acetylase-and-related-acetyltransferases	unknown	unknown	gnl\|CDD\|226122
LR134304.1\|VEE65585.1\|1039578_1040049_-\|Protein-of-uncharacterised-function-(DUF2538)	unknown	unknown	gnl\|CDD\|287742
LR134304.1\|VEE65586.1\|1040103_1041309_-\|Putative-transcriptional-regulator-ywtF	unknown	unknown	gnl\|CDD\|224235
LR134304.1\|VEE65567.1\|1019069_1019426_-\|DoxX	unknown	unknown	gnl\|CDD\|225168
LR134304.1\|VEE65582.1\|1034170_1034590_+\|transcriptional-regulator-SlyA	unknown	unknown	gnl\|CDD\|197670
LR134304.1\|VEE65570.1\|1021089_1021302_-\|TM2-domain	unknown	unknown	gnl\|CDD\|225196
LR134304.1\|VEE65580.1\|1031657_1032812_-\|Putative-aminotransferase-A	unknown	unknown	gnl\|CDD\|236075
LR134304.1\|VEE65568.1\|1019890_1020862_+\|Putative-ABC-transporter-substrate-binding-lipoprotein-yhfQ-precursor	unknown	unknown	gnl\|CDD\|226959
LR134304.1\|VEE65576.1\|1026992_1027814_+\|1,4-Dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
LR134304.1\|VEE65571.1\|1021460_1022018_+\|Predicted-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134304.1\|VEE65575.1\|1026196_1027000_+\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|274729
LR134304.1\|VEE65572.1\|1022068_1023007_-\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|235695
LR134304.1\|VEE65583.1\|1035016_1038763_-\|Bifunctional-autolysin-precursor	unknown	unknown	gnl\|CDD\|226656
LR134304.1\|VEE65579.1\|1030231_1031125_-\|Glutamyl-endopeptidase-precursor	unknown	unknown	gnl\|CDD\|226119
LR134304.1\|VEE65584.1\|1038989_1039427_-\|putative-acyltransferase	unknown	unknown	gnl\|CDD\|225064
LR134304.1\|VEE65573.1\|1023188_1024550_+\|Isochorismate-synthase-entC	unknown	unknown	gnl\|CDD\|224091

Protein	Function_ID	Function_description	E-value
LR134304.1\|VEE65578.1\|1028955_1030149_-\|Staphopain-B-precursor	gnl\|CDD\|368490	pfam05543, Peptidase_C47, Staphopain peptidase C47. Staphopains are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme.	5.25479e-103
LR134304.1\|VEE65577.1\|1028588_1028918_-\|Staphylococcal-cysteine-protease-B-inhibitor	gnl\|CDD\|370248	pfam09023, Staphostatin_B, Staphostatin B. Staphostatin B inhibits the cysteine protease Staphopain B, produced by Staphylococcus aureus, by blocking the active site of the enzyme. The domain adopts an eight-stranded mixed beta-barrel structure, with a deviation from the up-down topology of canonical beta-barrels in the amino-terminal part of the molecule.	4.34508e-48
LR134304.1\|VEE65574.1\|1024536_1026210_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylate-synthase	gnl\|CDD\|224087	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism].	0
LR134304.1\|VEE65581.1\|1033007_1034018_-\|Fucose-4-O-acetylase-and-related-acetyltransferases	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	8.07578e-71
LR134304.1\|VEE65585.1\|1039578_1040049_-\|Protein-of-uncharacterised-function-(DUF2538)	gnl\|CDD\|287742	pfam10804, DUF2538, Protein of unknown function (DUF2538). This family of proteins has no known function.	2.85082e-105
LR134304.1\|VEE65586.1\|1040103_1041309_-\|Putative-transcriptional-regulator-ywtF	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	4.43748e-78
LR134304.1\|VEE65567.1\|1019069_1019426_-\|DoxX	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.25127e-17
LR134304.1\|VEE65582.1\|1034170_1034590_+\|transcriptional-regulator-SlyA	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.56011e-20
LR134304.1\|VEE65570.1\|1021089_1021302_-\|TM2-domain	gnl\|CDD\|225196	COG2314, XynA, Predicted membrane protein [Function unknown].	4.42908e-09
LR134304.1\|VEE65580.1\|1031657_1032812_-\|Putative-aminotransferase-A	gnl\|CDD\|236075	PRK07683, PRK07683, aminotransferase A; Validated.	2.16982e-169
LR134304.1\|VEE65568.1\|1019890_1020862_+\|Putative-ABC-transporter-substrate-binding-lipoprotein-yhfQ-precursor	gnl\|CDD\|226959	COG4594, FecB, ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism].	8.16572e-133
LR134304.1\|VEE65576.1\|1026992_1027814_+\|1,4-Dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
LR134304.1\|VEE65571.1\|1021460_1022018_+\|Predicted-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.92477e-10
LR134304.1\|VEE65575.1\|1026196_1027000_+\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	1.52009e-114
LR134304.1\|VEE65572.1\|1022068_1023007_-\|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	5.69056e-124
LR134304.1\|VEE65583.1\|1035016_1038763_-\|Bifunctional-autolysin-precursor	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	2.1068e-84
LR134304.1\|VEE65579.1\|1030231_1031125_-\|Glutamyl-endopeptidase-precursor	gnl\|CDD\|226119	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism].	1.3602e-59
LR134304.1\|VEE65584.1\|1038989_1039427_-\|putative-acyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	1.3306e-25
LR134304.1\|VEE65573.1\|1023188_1024550_+\|Isochorismate-synthase-entC	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	2.78468e-148

>LR134304.1|VEE65576.1|1026992_1027814_+|1,4-Dihydroxy-2-naphthoyl-CoA-synthase
MTNRQWETLREYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLDQVEDETVQWCKEIMKHSPTALRFLKAAMNADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQFPKFP
>LR134304.1|VEE65575.1|1026196_1027000_+|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MLHYKFYKAKVDTSQILILLHGFLSDSRTYHDHIDTFTNICHVVTIDLPGHGEDKSPTDVDWNFDYITSSLDQILEQYKNKSISMLGYSMGGRIALYYALHGRIKIAKLILESTSPGIKLEADQIERRLIDEARAKVLEIAGIEVFVNDWEKLPLFQTQYQLSEEKQHQIREQRLSQSPIKMAKALRDYGTGQMPNLWSQIAGLKMPVLILAGEYDEKFVQIAEKMTNLISNSKCKLFSAVGHTIHVEDNVEFDTMILGFLKEEQND
>LR134304.1|VEE65574.1|1024536_1026210_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylate-synthase
MGNHKEALTKQVYTFASELYAYGVREVVISPGSRSTPLALAFEAHPNIKTWIHPDERSAAFFAVGLIKGSERPVAILCTSGTAAANYTPAIAESQISRIPLIVLTSDRPHELRSVGAPQAINQVNMFNNYVSYEFDMPLADDCKETIDAIYYQMQIASQYLYGPHKGPIHFNLPFRDPLTPDLTKTDLLKSEMKILPHYQKSINASALKNILSKPKGLIIVGDMQHQEVDQILTYSSMYDLPILADPLSRLRKFDHPNVISTYDLLYRSGLELNVDFVIRVGKPVISKKLNQWLKKAEALQILVQNNDKIDVFPIAPDISYEISANDFFRSLMDATIVKRKDWLELWQRLEEQARVEINHYLEHATDESAFVAELINKTPDEEALFISNSMPIRDIDNLLLNKNIDIYANRGANGIDGIVSTALGMAVHKRITLLIGDLSFYHDMNGLLMSKLNHIHMNIVLLNNDGGGIFSYLPQKDSASDYFERLFGTPTGLDFEYAAKLYDFSFKRFKHISDFKNEKLSYNISTIYEMITNREVNYEQHQILYKKLSEMIHATL
>LR134304.1|VEE65573.1|1023188_1024550_+|Isochorismate-synthase-entC
MATGVTEDDIVKEIYDSSKEWVSVEVKLSQSLDPSTLFHLTDNEAGGRFYMRLNDNRTSYFGYKAIQLFKNNFKNKQSIFREWEKLKQEIAFIHPQSGRHHLRIVGGFQFSSHKSDDEWREFGLNHFVLPEVLITTEDEDTFLTYTVQRENFDMDSFKALIEFFNNAMEIDVDDQNGEIIRNEDIYKDDWRQLVEEAIKSINKEEKIVLARRRLIKFDKVISIPYILKQAFSKEKNSYIFLLESQDSIFFSQTPEQLLKVNNRILSTKAVAGTIKRSHNEEEDKKHVEAFLKDNKNLVEHRFVVESILHDIEPYITELDYDKTPKILKNDHLYHLYTEIKAPLKDDSYIGLIDNLHPTPALGGYPKAFAIDFIEQKEFGTRGLYGAPVGYIDIYDDCEFIVAIRSMLIKQTQATLFAGCGIVKDSDPDSELAETNLKFSPMMNALGVDMNGKS
>LR134304.1|VEE65572.1|1022068_1023007_-|1,4-dihydroxy-2-naphthoate-octaprenyltransferase
MSNQYQQYSTVKKYWHLMRPHTLTASVVPVLVGTAASKIYFLGSEDHIKITLFVAMLLACLLIQAATNMFNEYYDYKKGLDDHESVGIGGAIVRNGMSPQLVLRLAIAFYIVAALLGIFLAVNTSFWLLPVGLVCMAVGYLYTGGPFPISWTPFGELFSGVFMGMFIIVIAFFIQTGNIQSYAIWLSIPIVITIGLINMANNIRDRVKDKASGRKTLPILLGKQASLAFMAIMYFIAYAFIVLTIIVKPGGSLFYLLALLSFPMPVKVIRRFKKNDTPATMMPAMAAAGKTNTFFGVLYALGIYISAIFAGI
>LR134304.1|VEE65571.1|1021460_1022018_+|Predicted-acetyltransferase
MKMIRQARPEDQFDIAKLVYMVWEDMELDIVKAVPKDKILTAIEKSCVDVRYRTYYEHIYVYEVEGKIAGCIISYNGKYELEYEKTWEQLNLPDEFQQYGTPLPVKEAKDDECYIETIATFEEYRGRGIATKLLTKLLESNTNVKWSLNCDVNNQTALKLYQKVGFTFDGYIELYKHKYHHLIVK
>LR134304.1|VEE65570.1|1021089_1021302_-|TM2-domain
MKVNKSIYVIVALFLGGVGIHKFYADKFGQGLLHLLFFWTGIPTIVSIIHAVIIIFSKKADKDGYIVFPK
>LR134304.1|VEE65569.1|1020892_1021009_-|Uncharacterised-protein
MRRFIKKIAKAILIGYVIKFIRQKLSDKSSHPSDNQHK
>LR134304.1|VEE65568.1|1019890_1020862_+|Putative-ABC-transporter-substrate-binding-lipoprotein-yhfQ-precursor
MSKKVIRLIITLIVIVIIVAGCGKDKDKKEKEMVTIKDALGTEKITKNPKRIVVLEYSFADYLASLNVKPVGIADDGNAKNITKTVRDKIGKYESVGSRPQPNMEDISKLKPDLIIADVSRHKKIKAELNKIAPTIMLVSGTGDYNANIDSFKTVAKAIGKEKEGGKRLEKHEKILAAVRKKIEHSSLKSAFAFGISNTGMFINNEDTFMGQFLIKMGIKPEVTKDKTAHIGERKGGPYIFLNNEELANINPKVMILATDGNTDKNRTKFIDPAVWKSLKAVKDHKVYDVDRSKWLKSRGIIASESMAEDLEKIVDKIENNKT
>LR134304.1|VEE65567.1|1019069_1019426_-|DoxX
MKLGMLLIRWMLATSFLVHGTLKFVDLDGTIHFLGSLGLPPAIAVLMSIGEVVGGLALIIGFLTPYVNVFYICVMLGSIFTLKLTRGYVSGYEFEIIHIVMNLACISSYSWKKWLQFY
>LR134304.1|VEE65577.1|1028588_1028918_-|Staphylococcal-cysteine-protease-B-inhibitor
MYQLQFINFIYDKTNLTHLELNNINLFIGNWSNHQLQKTICIRHGDNTTQNQCRILFIDTTHQRIKFSPLHQDQIIYILDYDDSQHILMQTSSQDGIGTSRPILYERLI
>LR134304.1|VEE65578.1|1028955_1030149_-|Staphopain-B-precursor
MNNSCKTRIFNIISIALISLLILSLVAIANNNNNAKADSQSKQLEIKVKSDKVPQKVDALAHQQFAGYAKALDKQNNAQAGKYELGEAFKIYKFNGEEDNSYYYPIIKDGKIVYILTLSPKNKDDLNKSKDDMNYSVKISNFIAKELDQIKDKNTNITVLTDEKGFYFEEDGKVRLVKATPLPNNVKEKESSKTVSPELKQELKATVTPTKIEESATLQNEQADQVQYENTLKNFKIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPDVSEEELVNCSTYPNQMIEYGKSQGRDIHYQEGMPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKIIYWNPWDTEVSIQDADSSLLHLSFNRDYNWYGSMIGY
>LR134304.1|VEE65579.1|1030231_1031125_-|Glutamyl-endopeptidase-precursor
MKGKFLKVSSLLVATLTTVTLVNSPSANALSSNSLDSHAKQTQSDKQQSPKIQKGNNLKPIEQREHANVILPNNDRHQIEDTTNGHYAPVTFIQVESPTGTFIASGVVVGKDTLLTNKHVVDATQGNPQSLTAFPSAKSQDNYPNGGFRAEQITKYTGEGDLAIVKFSPNDKNQHIGEVVKPATMSNNAETQVEQPITVTGYPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNDKNEVIGIHWGGVPNEFNGAVFINENVRNFLKENIQDIHFADGDNNNSDNPDAA
>LR134304.1|VEE65580.1|1031657_1032812_-|Putative-aminotransferase-A
MKLSLNSNSKYLRAPSIRQFSNRMKNLDDCINLTIGQPDFAMPDVVKQAYINAIENNKTTYSHNKGMLETREAISQYFKNRYQFYYDPEEIIVTNGASEALDTSLRSIIEPGDEILIPGPIYAGYIPLIEVLGGIPIYIDTTATQFKITPDAIKRHITPKTKAILLNYPTNPTGVVLKRNEVEELVNVLKKYPIFIISDEIYAENTFSGKHVSFAEFEDIRDQLLLIGGLSKSHSATGIRIGFLLGPEYLIEKLTFMHAYNCICANVPSQMACIAALKEGLESPKYMNEAYIERRNYLVSELTKLGFNITAQPEGAFYIFPSIKHITDDDFKFCVDLLESVHLAIVPGSAFTEAGKGFVRISYAYDMDVLREGINRLAQFLNTK
>LR134304.1|VEE65581.1|1033007_1034018_-|Fucose-4-O-acetylase-and-related-acetyltransferases
MTSLKERDYFFDNARAILILLVVFGHMLQPYTSGDKFLSALYLVIYSFHMPTFLFISGYFAKNIDKPYYLEKIAKRLLVPYMIFFAFFSIYYFLTGKSDELQLDPFNPVFALWFLITLFFFHVILVIVRRFNPYKVLTVSIIISIVAGFSENIDSYLSISRTIVFFPIFYIGFIFTKKQTNIFKSKILIPISIITFIMFFAIYLIHPINADWLLGSSPYTSLEHEGQSIFSPFKRLVLYAIILIAMTAFLNLIPEKKQFYTYIGSRTLYIYLLHGLIIGIVRGFEWYPFDKPICMMTYIYLISISVVIVYVLSTNFICKWTNPIINLQRPSQFKDS
>LR134304.1|VEE65582.1|1034170_1034590_+|transcriptional-regulator-SlyA
MYKQLEKLITLTNNDLNLVNRRFGQRTDITSEQLELLRILYNFDRLSQYDLTMKISREQSIVSRWIKKLVLKGYITSQQSSEDLRCKELILTNQARDLISQINKARCELIEARCQCLSEGELDNLNQLLDKLNQRRISL
>LR134304.1|VEE65583.1|1035016_1038763_-|Bifunctional-autolysin-precursor
MAKKFNYKLPSMVALTLVGSAVTAHQVQAAETTQDQTANKNVLDSNKVKATTEQAKAEVKNPTQNISGTQVYQDPSIVQPKAASKTPNTQVNTKVDTAQVNSDTSATKSTTTNKVQPVAKSATTTTPKVNSNVTSAGYSLVDDEDDNTANSQINPELIKSAAKPAALKTQYKAATPKATTTTPKVTTFSATAQPRTAAAAPKTNLPKYKPQVNSSINDYIRKNNLKAPKIEEDYTSYFPKYAYRNGVGRPEGIVVHDTANDNSTINGEISYMKNNYQNAFVHAFVDGNRIVETAPTDYLSWGVGAVGNPRFINVEIVHTHDYASFARSMNNYADYAATQLQYYGLKPDSAEYDGKGTVWTHYAVSKYLGGTDHADPHGYLRSHNYSYDQLYDLINEKYLIKMGKVAPWGTQSTTTPTTPTKPSTPSTPSTGKLTVAANNGVAQIKPTNSGLYTTVYDKTGKATSEVQKTFAVSKTATLGNQKFYLVQDYNSGNKFGWVKEGDVVYNTAKTPVSVNQSYTIKPGTNLYTVPWGTSKQVAGSVTGTGNQTFKATKQQQIDKSIYLYGSVNGKSGWVSKYYLVDIAKPTPAPKPATPTTNNKLTVSALNGVAQINSKNNGLFTTVYDKTGKPTTEVQKTFAVTKEATLGGNKFYLVKDYNSPTLIGWVKQGDVVYNNAKSPESVMQTYTVKPGTKLYSVPWGTYKQEAGSVTGTGNQTFKATKQQQIDKSIYLYGSVNGKSGWISKAYLASPVAPKTAVAQPKTAVKAYSVVKPQATQTTQTVRKIAQVKANNTGIRASVYEKTAKNGAKYADRTFYVTKQRAHGNETYVLLNNSSHNIPLGWFNVKDLNMQNLGTEVKTTQKYTVNKSNSGLSMVPWGTKNQVILPGNNIAQGTFNAAKQVSVGNDVYLYGTINNRTGWVNVKDLTAPIAVKPTNSEAKDYNYTYVIKNGNGYYYVTPNADNAKYSLKAFNEQPFAVVKQQVINGQTWYYGKLANGKLAWIKSTDLAKELIKYNQTGMTLNQVAQLQAGLQYKPQVQRVPGKWTDANFNDVKHAMDTKRLAQDPALKYQFLRLDQPQNISVDKINQFLKGKGVLENQGAAFNKAAQMYGINEVYLISHALLETGNGTSQLAKGADVVNNKVVTNTATKFHNVFGIAAYDNDPLREGIKYAKQSGWDTVSKAIIGGAKFIGNSYVKAGQNTLYKMRWNPAHPGTHQYATDVDWANINAKIIKGYYDKIGEVGKYFDIPQYK
>LR134304.1|VEE65584.1|1038989_1039427_-|putative-acyltransferase
MFKKVINQQMLEDCFAIRKKVFVEEQGVPAENEIDDYESISIHLIGYDHHNLPIATARIRPINEKLVKIERVAVIKSYRGTGIGRKLMDAVDSLARDEGYKNATMHAQCHAVPFYESLNFKKRGNIFLEEGIEHIEMLKKLTSYN
>LR134304.1|VEE65585.1|1039578_1040049_-|Protein-of-uncharacterised-function-(DUF2538)
MSRKTYEKIANINGMFNVLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIENPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
>LR134304.1|VEE65586.1|1040103_1041309_-|Putative-transcriptional-regulator-ywtF
MNKFLKYFLILLALVLIVVPIVYATLLFKTSQDAFESSQDSKNANRQSNLRDKKVNPEEQPISILFLGIDDNDGRRKKGQDAEHSRSDAMILTTFNQNKHQIRMLSIPRDTISYIPKVGYYDKITHAHAYGGPIASMDSVEATMNVPVDYYVRINMKAFVEAVNELGGIYYDVPYDLNEPNTDDTGKIKIKKGYQKLNGDEALAVARTRHHDSDLKRGQRQMELIKILFQKAQEVDSIDKLDNVIQIVGKNAKHNLTNSEIKALAKMYLTNDVKIKTAQLKGKDDMLNGIYYYHPSVESIQKYANLLREDLELSPINDKNDFLDQRVINHYGSLIPLTPLDSSLLRKEQNDTTDKEKDKSSEDNSDSNSQQQSGTDQNTNQNQNNVQQAPQSSNNQNGVIN

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Crispr_ID: LR134304_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134304_4

1776927-1777069

Orphan

Consensus_repeat	Method
TCTGTGTTGGGGCCCACACCCCAACT	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR134304_4

>merge|LR134304|4|1776927-1777069|CRISPRCasFinder
TCTGTGTTGGGGCCCACACCCCAACTTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCATTTCGAAATTCTCTGTGTTGGGGCCCCAGACTAGAAT

>LR134304|4|4|1776927-1777069|CRISPRCasFinder
TCTGTGTTGGGGCCCACACCCCAACT	TGCACATTATCGTAAGCTGACTTTTCGTCAGCT
TCTGTGTTGGGGCCCACACCCCAACT	CGCATTGCCTGTAGAATTTCATTTCGAAATTC
TCTGTGTTGGGGCCCCAGACTAGAAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134304.1\|VEE66247.1\|1763155_1764820_-\|Alkaline-phosphatase-synthesis-sensor-protein-phoR	unknown	unknown	gnl\|CDD\|274368
LR134304.1\|VEE66264.1\|1786850_1787150_-\|Alanine-dehydrogenase-2	unknown	unknown	gnl\|CDD\|240630
LR134304.1\|VEE66261.1\|1783905_1784595_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
LR134304.1\|VEE66251.1\|1768535_1769897_+\|D-serine/D-alanine/glycine-transporter	unknown	unknown	gnl\|CDD\|224038
LR134304.1\|VEE66250.1\|1767066_1768188_-\|Citrate-synthase-2	unknown	unknown	gnl\|CDD\|184468
LR134304.1\|VEE66248.1\|1764819_1765521_-\|Alkaline-phosphatase-synthesis-transcriptional-regulatory-protein-phoP	unknown	unknown	gnl\|CDD\|223816
LR134304.1\|VEE66254.1\|1773367_1774312_-\|Acetyl-coenzyme-A-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
LR134304.1\|VEE66262.1\|1784769_1785825_+\|Uncharacterized-peptidase-SA1530	unknown	unknown	gnl\|CDD\|223085
LR134304.1\|VEE66260.1\|1783233_1783647_+\|Universal-stress-protein-family	unknown	unknown	gnl\|CDD\|366180
LR134304.1\|VEE66252.1\|1770329_1772087_-\|Pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
LR134304.1\|VEE66265.1\|1787290_1787791_+\|Putative-universal-stress-protein-SAV1710	unknown	unknown	gnl\|CDD\|366180
LR134304.1\|VEE66253.1\|1772108_1773077_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
LR134304.1\|VEE66266.1\|1788078_1789281_-\|Acetate-kinase	unknown	unknown	gnl\|CDD\|234680
LR134304.1\|VEE66259.1\|1781731_1783030_-\|putative-manganese-dependent-inorganic-pyrophosphatase	unknown	unknown	gnl\|CDD\|226594
LR134304.1\|VEE66257.1\|1777386_1780584_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
LR134304.1\|VEE66256.1\|1775355_1776585_-\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
LR134304.1\|VEE66263.1\|1786031_1786847_-\|Alanine-dehydrogenase-2	unknown	unknown	gnl\|CDD\|240630
LR134304.1\|VEE66258.1\|1780604_1781546_-\|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA	unknown	unknown	gnl\|CDD\|223691
LR134304.1\|VEE66249.1\|1765752_1767021_-\|Isocitrate-dehydrogenase-[NADP]	unknown	unknown	gnl\|CDD\|180792
LR134304.1\|VEE66255.1\|1774311_1775169_-\|Acetyl-coenzyme-A-carboxylase-carboxyl-transferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547

Protein	Function_ID	Function_description	E-value
LR134304.1\|VEE66247.1\|1763155_1764820_-\|Alkaline-phosphatase-synthesis-sensor-protein-phoR	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	2.87507e-96
LR134304.1\|VEE66264.1\|1786850_1787150_-\|Alanine-dehydrogenase-2	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	1.74563e-57
LR134304.1\|VEE66261.1\|1783905_1784595_-\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	8.242e-130
LR134304.1\|VEE66251.1\|1768535_1769897_+\|D-serine/D-alanine/glycine-transporter	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
LR134304.1\|VEE66250.1\|1767066_1768188_-\|Citrate-synthase-2	gnl\|CDD\|184468	PRK14035, PRK14035, citrate synthase; Provisional.	0
LR134304.1\|VEE66248.1\|1764819_1765521_-\|Alkaline-phosphatase-synthesis-transcriptional-regulatory-protein-phoP	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.14785e-95
LR134304.1\|VEE66254.1\|1773367_1774312_-\|Acetyl-coenzyme-A-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
LR134304.1\|VEE66262.1\|1784769_1785825_+\|Uncharacterized-peptidase-SA1530	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	2.23111e-127
LR134304.1\|VEE66260.1\|1783233_1783647_+\|Universal-stress-protein-family	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	7.85117e-19
LR134304.1\|VEE66252.1\|1770329_1772087_-\|Pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
LR134304.1\|VEE66265.1\|1787290_1787791_+\|Putative-universal-stress-protein-SAV1710	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36
LR134304.1\|VEE66253.1\|1772108_1773077_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
LR134304.1\|VEE66266.1\|1788078_1789281_-\|Acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
LR134304.1\|VEE66259.1\|1781731_1783030_-\|putative-manganese-dependent-inorganic-pyrophosphatase	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
LR134304.1\|VEE66257.1\|1777386_1780584_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
LR134304.1\|VEE66256.1\|1775355_1776585_-\|NADP-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
LR134304.1\|VEE66263.1\|1786031_1786847_-\|Alanine-dehydrogenase-2	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	1.0745e-168
LR134304.1\|VEE66258.1\|1780604_1781546_-\|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	3.30739e-97
LR134304.1\|VEE66249.1\|1765752_1767021_-\|Isocitrate-dehydrogenase-[NADP]	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
LR134304.1\|VEE66255.1\|1774311_1775169_-\|Acetyl-coenzyme-A-carboxylase-carboxyl-transferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0

>LR134304.1|VEE66256.1|1775355_1776585_-|NADP-dependent-malic-enzyme
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALATTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDLAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEITPDDAKAAGACVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIKRDELNADYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVNPQYVYDKTMKLTDLQ
>LR134304.1|VEE66255.1|1774311_1775169_-|Acetyl-coenzyme-A-carboxylase-carboxyl-transferase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAELEGMKYGVAVMDSRFRMGSMGSVIGEKICRIIDYCTEHRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRKEMRQTLSEILKIHQEVTE
>LR134304.1|VEE66254.1|1773367_1774312_-|Acetyl-coenzyme-A-carboxylase-carboxyl-transferase-subunit-alpha
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKVHTNLKPWDRVQIARLQERPTSLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNDRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAVVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVIAEPLGGAHKDIEKQALAIKTAFVKQLDSLEKLTRDEIANNRFEKFRNIGSYIE
>LR134304.1|VEE66253.1|1772108_1773077_-|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEKEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQECQKELSEYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGFAVDLLMQGETAKGVGIKNNKIVASSFDEIFDGKDHKFDYSLYELANKLSI
>LR134304.1|VEE66252.1|1770329_1772087_-|Pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHDKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQNANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIIITAGVPTGETGTTNMMKIHLVGDEIASGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPFVEKALGLITEENGITSPSAIVGLEKGIPTVVGVDKAVKNINNNVLVTIDAAQGKIFEGYANVL
>LR134304.1|VEE66251.1|1768535_1769897_+|D-serine/D-alanine/glycine-transporter
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWLSALFSVLVLMSFNLLSAKLFGELEFWFSIIKIATIIGLIIVGFFMILFAFKTQFGHASFTNLYEHGVFPKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWHQVDPANSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLYGLSSQQQAPPNFSKTNKYGVPHIAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKKATYKLFGGKYMGYLILIFFIFVFGLLFINVETRRAIYFIPIWFILLAFMYLRYKRIAAKMNN
>LR134304.1|VEE66250.1|1767066_1768188_-|Citrate-synthase-2
MAELQRGLEGVIAAETKISSIIDSQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNKEELAYLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYIAHFDPDAENESDENRYERAMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGEIPTDIEVEAFNKALILHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEVGSIDNVDTYLDEKFANKEKIMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAEEKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIGETNRKYIPLEERK
>LR134304.1|VEE66249.1|1765752_1767021_-|Isocitrate-dehydrogenase-[NADP]
MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWEAASRVIDAAVDKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTPEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAINEFGDKVFTWQQYDEIAEKEGKDVANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITESIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKNLK
>LR134304.1|VEE66248.1|1764819_1765521_-|Alkaline-phosphatase-synthesis-transcriptional-regulatory-protein-phoP
MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKDGIEVCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQFVKEVEEIEDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLNTVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLERPKE
>LR134304.1|VEE66247.1|1763155_1764820_-|Alkaline-phosphatase-synthesis-sensor-protein-phoR
MMKFHHRLMLLISTILIISFVTLGIIIHASITYVLSEKHEQALATDARSYIYLLQDNEINKLKKIVKQQNVDLLITKNDENVFKSGQLKAIKTEESYIQNKDIFTFNKKVNDYHVWIKGYNSDISEMHWTLWKYLVLTCLIVLICLYFASRSFKRTLIRPIQEVTYATQLLANGYYHIRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIVVANKAYYEQFNISHNIEQISYHGYVNTEIEQLILESFKIEKPIYEQLEVSINTVHTKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDSESLDMFLNIILKESNRIESLVTDLLDLSHIEQHAELDIEYMNLSDLTKRIINNMMTQANQKNIKIHTDIQTDVIVKAQESKIAQVITNLLTNAINYSFENGEIDVRVYRDDFNVVFEVQDFGIGIKSEDQQRIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHQGNIEVSSQVGQGSTFKVTLKDYKA
>LR134304.1|VEE66257.1|1777386_1780584_-|DNA-polymerase-III-subunit-alpha
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTLYVTNGLNTVETVVLAKNNNGLKDLYQLSSEIKINAIDNVPFELLQRFSDNMVIIFKHVNEEHRDIIEVFESHEDIYLDHKSLPLNNKKHVWIQDICYQARQDADTISALAAIRDNTKLDLIHDQEDFGKHFITENEIQQQNINQDYLIQADSIAQKCEAELNYHQSLLPQFQTPNNETAKDYLWRILVERLKKLELNNAKYQERLKYEYKIITNMGFEDYFLIVSDLIHFAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQYVQQKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEITLNEISSLIPHKLGITLNEAYQIEDFKKFVHRNHRHEKWFDICKKLEGLPRHTSTHAAGIIINDHPLYDYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIMSQVKKDLGIQIDIEKIPFDDKKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPNKVQYLHPDLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKENGYHENISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHFPNYFYANILSNVIGSEKKTAQMIDEAKKQGISILPPNINESHWFYKPSKDGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDVFGKTRATLLQSIDQVLDSDLNLDQDGFLFDMLTPKQTYEEKEELSDTLISQYEKEYLGFYVSQHPVDKKFGAKQYLTIYKLTNAQNNKPILVQFDKIKQIRTKNGQNMAFVTLNDGISTLDGVMFPDQYKKFEHILSQNEMFIVSGKFDIRRQQRQLIINNLQTLMTFEEQKIANAKQIIIRNKENIQKFDEMIMQSKKNPDEIALYFYEETTKQMTSIGYINQKSAMLNNFIQSFNPTDIRLI
>LR134304.1|VEE66258.1|1780604_1781546_-|Bifunctional-oligoribonuclease-and-PAP-phosphatase-nrnA
MINTMNTIMKCVEENDTIIIHRHVRPDPDAYGSQLGLKYYLQQKYPQKHIYAVGEEEPSLSFIGQLDNIDDATYQEALVIVCDTANAPRIDDNRYELGSKLIKIDHHPAVDQYGDINYVNTDASSTSEIICDLISHFNDDAIINKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLISHNINHNALLNKMMEKDPKMLPFQGYVLQHFELMSDGFCQVKITQEVLEEFGIQPNEASQFVNTIADIKGLKIWVFAVDEGSEIRCRLRSKGQLVINDVAQDFGGGGHPNASGVSVNNWDEFEQLAKALRGKIN
>LR134304.1|VEE66259.1|1781731_1783030_-|putative-manganese-dependent-inorganic-pyrophosphatase
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSSKVINFANEHDLPVLSSSYDTFLVANIINKALYNQKIRKDILIVQDIMTPLDELSVLFDTMKIADYKRMANRTGHTRFPVVNESFKLVGIVTSREMINTKDDDDIDKVMTRNPIYVNALSTVASCAHMMIWEGIELIPVVSNNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQEGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKYKKGNVMIENLNIVYIKTVPIESHITVDFGILDVGRNFAKIEVTMHSHNDKVASALVICQMFEEV
>LR134304.1|VEE66260.1|1783233_1783647_+|Universal-stress-protein-family
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTILNAISEQDAQASIKAGVHLNKLTEDRSKKLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>LR134304.1|VEE66261.1|1783905_1784595_-|metal-dependent-hydrolase
MKLSFHGQSTIYFEGNGKKVIVDPFISNNPKSDLNIEALKLDYILLTHGHFDHFGDVVELAKKTRATVVGSAEMADYLSSYHGVENVHGMNIGGKANLDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIILEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGEAVQF
>LR134304.1|VEE66262.1|1784769_1785825_+|Uncharacterized-peptidase-SA1530
MTNISKIIDELNNQHADAAWITTPLNIFYFTGYRSEPHERLFSLLIKKDGTQVLFCPKMEVEEVKASPFKGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVSSFGDIDLTIKHLRNIKSEDEIEKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQHGVNEMSFDTMVLFGDHAASPHGTPGNRKLQQNEYVLFDLGVIYEHYCSDMTRTVKFGEPSQEAQNIYNIVLEAETSAIKAIKPGIALKDIDRIARNIISENGYGDYFPHRLGHGLGLQEHEYQDVSSTNTNLLEAGMVITIEPGIYVPNVTGVRIEDDILVTENGYEILTKYDK
>LR134304.1|VEE66263.1|1786031_1786847_-|Alanine-dehydrogenase-2
MTQALIDKKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFDGRVHTIMSNPLNIELYVKDSDLVIGAVLIPGAKAPRLVTEDMIKQMKKGSVVIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGFREAFKSNQPLSLGLNTYKGQVTNKGVADAFGIEYKTVDEALRL
>LR134304.1|VEE66264.1|1786850_1787150_-|Alanine-dehydrogenase-2
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGAGSFFEDTDYKEAGAEIIAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANE
>LR134304.1|VEE66265.1|1787290_1787791_+|Putative-universal-stress-protein-SAV1710
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>LR134304.1|VEE66266.1|1788078_1789281_-|Acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLVERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAELLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIREKVLEGLEFMGVYWDPKKNENLQRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	744405-744437	0	1.0
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	1872169-1872201	0	1.0
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	2105524-2105556	0	1.0
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	2105583-2105615	0	1.0
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	2283090-2283122	0	1.0
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	2698068-2698100	0	1.0
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	LR134304.1	1232712-1232743	0	1.0
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	2327815-2327847	1	0.97
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	LR134304.1	1210329-1210360	1	0.969
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	LR134304.1	2694263-2694294	1	0.969
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	60684-60716	2	0.939
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	148292-148324	2	0.939
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	2105412-2105444	2	0.939
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	2105468-2105500	2	0.939
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	LR134304.1	2282977-2283009	2	0.939

1. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 744405-744437, mismatch: 0, identity: 1.0

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattatcgtaagctgacttttcgtcagct	Protospacer
*********************************

2. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 1872169-1872201, mismatch: 0, identity: 1.0

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattatcgtaagctgacttttcgtcagct	Protospacer
*********************************

3. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 2105524-2105556, mismatch: 0, identity: 1.0

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattatcgtaagctgacttttcgtcagct	Protospacer
*********************************

4. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 2105583-2105615, mismatch: 0, identity: 1.0

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattatcgtaagctgacttttcgtcagct	Protospacer
*********************************

5. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 2283090-2283122, mismatch: 0, identity: 1.0

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattatcgtaagctgacttttcgtcagct	Protospacer
*********************************

6. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 2698068-2698100, mismatch: 0, identity: 1.0

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattatcgtaagctgacttttcgtcagct	Protospacer
*********************************

7. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to position: 1232712-1232743, mismatch: 0, identity: 1.0

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
cgcattgcctgtagaatttcatttcgaaattc	Protospacer
********************************

8. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 2327815-2327847, mismatch: 1, identity: 0.97

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattattgtaagctgacttttcgtcagct	Protospacer
**********.**********************

9. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to position: 1210329-1210360, mismatch: 1, identity: 0.969

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
cgcattgcctgtagaatttcttttcgaaattc	Protospacer
******************** ***********

10. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to position: 2694263-2694294, mismatch: 1, identity: 0.969

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
cgcattgtctgtagaatttcatttcgaaattc	Protospacer
*******.************************

11. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 60684-60716, mismatch: 2, identity: 0.939

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattattgtaagctgacttttcgccagct	Protospacer
**********.****************.*****

12. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 148292-148324, mismatch: 2, identity: 0.939

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattattgtaagctgacttttcgccagct	Protospacer
**********.****************.*****

13. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 2105412-2105444, mismatch: 2, identity: 0.939

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattattgtaagctgacttttcgccagct	Protospacer
**********.****************.*****

14. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 2105468-2105500, mismatch: 2, identity: 0.939

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattattgtaagctgacttttcgccagct	Protospacer
**********.****************.*****

15. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to position: 2282977-2283009, mismatch: 2, identity: 0.939

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattattgtaagctgacttttcgccagct	Protospacer
**********.****************.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134304_4	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	NC_021536	Synechococcus phage S-IOM18 genomic sequence	159749-159781	9	0.727
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	102954-102985	9	0.719
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	NC_009821	Enterobacteria phage Phi1, complete genome	123690-123721	9	0.719
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	NC_025425	Enterobacteria phage GEC-3S complete genome	123231-123262	9	0.719
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MN709127	Escherichia virus Ec_Makalu_002, complete genome	124448-124479	9	0.719
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MK327935	Escherichia phage vB_EcoM_G2494, complete genome	126620-126651	9	0.719
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MK962753	Shigella phage JK32, complete genome	136064-136095	9	0.719
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MN850574	Escherichia phage kaaroe, complete genome	146932-146963	9	0.719
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MN850615	Escherichia phage kvi, complete genome	60988-61019	9	0.719
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MN882349	Escherichia virus Ec_Makalu_003, complete genome	123141-123172	9	0.719
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	NZ_CP045275	Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence	4575-4606	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MN655998	Escherichia phage E26, complete genome	123442-123473	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MH560358	Escherichia virus KFS-EC, complete genome	67715-67746	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MK573636	Escherichia phage vB_EcoM_PHB13, partial genome	111150-111181	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MT764208	Escherichia phage JEP8, complete genome	37767-37798	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MT478991	Escherichia phage vB_EcoM_011D4, complete genome	74682-74713	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MK327941	Escherichia phage vB_EcoM_G37-3, complete genome	125621-125652	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	NC_009821	Enterobacteria phage Phi1, complete genome	123686-123717	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MF327006	Shigella phage Sf20, complete genome	59748-59779	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MK327932	Escherichia phage vB_EcoM_G2248, complete genome	130437-130468	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	NC_025425	Enterobacteria phage GEC-3S complete genome	123227-123258	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MN709127	Escherichia virus Ec_Makalu_002, complete genome	124444-124475	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MK327947	Escherichia phage vB_EcoM_G5211, complete genome	123818-123849	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	NC_041936	Escherichia phage ECD7, complete genome	126061-126092	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	AY343333	Enterobacteria phage RB49, complete genome	123679-123710	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MK327935	Escherichia phage vB_EcoM_G2494, complete genome	126616-126647	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MK962753	Shigella phage JK32, complete genome	136060-136091	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	NC_012740	Enterobacteria phage JSE, complete genome	127419-127450	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MN850574	Escherichia phage kaaroe, complete genome	146936-146967	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MN850615	Escherichia phage kvi, complete genome	60984-61015	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MN894885	Escherichia virus Ec_Makalu_001, complete genome	122751-122782	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	MN882349	Escherichia virus Ec_Makalu_003, complete genome	123137-123168	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MN655998	Escherichia phage E26, complete genome	123446-123477	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MH560358	Escherichia virus KFS-EC, complete genome	67719-67750	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MK573636	Escherichia phage vB_EcoM_PHB13, partial genome	111146-111177	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MT764208	Escherichia phage JEP8, complete genome	37771-37802	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MT478991	Escherichia phage vB_EcoM_011D4, complete genome	74686-74717	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MK327941	Escherichia phage vB_EcoM_G37-3, complete genome	125625-125656	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MF327006	Shigella phage Sf20, complete genome	59752-59783	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MK327932	Escherichia phage vB_EcoM_G2248, complete genome	130441-130472	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MK327947	Escherichia phage vB_EcoM_G5211, complete genome	123822-123853	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	NC_041936	Escherichia phage ECD7, complete genome	126065-126096	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	AY343333	Enterobacteria phage RB49, complete genome	123683-123714	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	NC_012740	Enterobacteria phage JSE, complete genome	127423-127454	10	0.688
LR134304_4	4.2\|1777012\|32\|LR134304\|CRISPRCasFinder	1777012-1777043	32	MN894885	Escherichia virus Ec_Makalu_001, complete genome	122755-122786	10	0.688
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	AX059140	Sequence 1 from Patent WO0075335	5575-5606	14	0.562
LR134304_2	2.1\|302135\|32\|LR134304\|CRISPRCasFinder	302135-302166	32	NC_004735	Rhodothermus phage RM378, complete genome	5575-5606	14	0.562

1. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 9, identity: 0.727

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
taaattttatcgtaaggtgagttttcgtcaagc	Protospacer
*. *. ********** *** *********. .

2. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 9, identity: 0.719

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
aaaatccactgcagaatttcattttgaaattt	Protospacer
 . **.  ***.************.******.

3. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to NC_009821 (Enterobacteria phage Phi1, complete genome) position: , mismatch: 9, identity: 0.719

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
cgatcagccagtagaattttatttcgaaaagt	Protospacer
**  . *** *********.*********  .

4. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to NC_025425 (Enterobacteria phage GEC-3S complete genome) position: , mismatch: 9, identity: 0.719

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
cgatcagccagtagaattttatttcgaaaagt	Protospacer
**  . *** *********.*********  .

5. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MN709127 (Escherichia virus Ec_Makalu_002, complete genome) position: , mismatch: 9, identity: 0.719

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
cgatcagccagtagaattttatttcgaaaagt	Protospacer
**  . *** *********.*********  .

6. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MK327935 (Escherichia phage vB_EcoM_G2494, complete genome) position: , mismatch: 9, identity: 0.719

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
cgaccagccagtagaattttatttcgaaaagt	Protospacer
**  . *** *********.*********  .

7. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 9, identity: 0.719

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
cgaccagccagtagaattttatttcgaaaagt	Protospacer
**  . *** *********.*********  .

8. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MN850574 (Escherichia phage kaaroe, complete genome) position: , mismatch: 9, identity: 0.719

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
cgaccagccagtagaattttatttcgaaaagt	Protospacer
**  . *** *********.*********  .

9. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MN850615 (Escherichia phage kvi, complete genome) position: , mismatch: 9, identity: 0.719

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
cgaccagccagtagaattttatttcgaaaagt	Protospacer
**  . *** *********.*********  .

10. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MN882349 (Escherichia virus Ec_Makalu_003, complete genome) position: , mismatch: 9, identity: 0.719

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
cgatcagccagtagaattttatttcgaaaagt	Protospacer
**  . *** *********.*********  .

11. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to NZ_CP045275 (Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
ttgcctctagaatttcattacgagctctatgg	Protospacer
****** ************ ***. *.. .

12. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MN655998 (Escherichia phage E26, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

13. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MH560358 (Escherichia virus KFS-EC, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

14. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

15. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MT764208 (Escherichia phage JEP8, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

16. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MT478991 (Escherichia phage vB_EcoM_011D4, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

17. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MK327941 (Escherichia phage vB_EcoM_G37-3, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

18. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to NC_009821 (Enterobacteria phage Phi1, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

19. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MF327006 (Shigella phage Sf20, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

20. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MK327932 (Escherichia phage vB_EcoM_G2248, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

21. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to NC_025425 (Enterobacteria phage GEC-3S complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

22. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MN709127 (Escherichia virus Ec_Makalu_002, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

23. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MK327947 (Escherichia phage vB_EcoM_G5211, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

24. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to NC_041936 (Escherichia phage ECD7, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

25. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to AY343333 (Enterobacteria phage RB49, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

26. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MK327935 (Escherichia phage vB_EcoM_G2494, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

27. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

28. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to NC_012740 (Enterobacteria phage JSE, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

29. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MN850574 (Escherichia phage kaaroe, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

30. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MN850615 (Escherichia phage kvi, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

31. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MN894885 (Escherichia virus Ec_Makalu_001, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

32. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to MN882349 (Escherichia virus Ec_Makalu_003, complete genome) position: , mismatch: 10, identity: 0.688

ttgcctgtagaatttcatttcgaaattctctt	CRISPR spacer
cagccagtagaattttatttcgaaaagtacga	Protospacer
. *** *********.*********  . *

33. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MN655998 (Escherichia phage E26, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

34. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MH560358 (Escherichia virus KFS-EC, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

35. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

36. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MT764208 (Escherichia phage JEP8, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

37. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MT478991 (Escherichia phage vB_EcoM_011D4, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

38. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MK327941 (Escherichia phage vB_EcoM_G37-3, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

39. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MF327006 (Shigella phage Sf20, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

40. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MK327932 (Escherichia phage vB_EcoM_G2248, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

41. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MK327947 (Escherichia phage vB_EcoM_G5211, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

42. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to NC_041936 (Escherichia phage ECD7, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

43. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to AY343333 (Enterobacteria phage RB49, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

44. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to NC_012740 (Enterobacteria phage JSE, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

45. spacer 4.2|1777012|32|LR134304|CRISPRCasFinder matches to MN894885 (Escherichia virus Ec_Makalu_001, complete genome) position: , mismatch: 10, identity: 0.688

cgcattgcctgtagaatttcatttcgaaattc	CRISPR spacer
tgaccagccagtagaattttatttcgaaaagt	Protospacer
.*  . *** *********.*********  .

46. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to AX059140 (Sequence 1 from Patent WO0075335) position: , mismatch: 14, identity: 0.562

ttgcctgtagaatttcatttcgaaattctctt-----	CRISPR spacer
-----aatagaatttcgaaacgaaattcatctttaca	Protospacer
      .*********.   ******** ..*

47. spacer 2.1|302135|32|LR134304|CRISPRCasFinder matches to NC_004735 (Rhodothermus phage RM378, complete genome) position: , mismatch: 14, identity: 0.562

ttgcctgtagaatttcatttcgaaattctctt-----	CRISPR spacer
-----aatagaatttcgaaacgaaattcatctttaca	Protospacer
      .*********.   ******** ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

722326 : 730134

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE65267.1\|722326_723382_-	Histidine protein kinase saeS	A0A1V0SGX0	Hokovirus	3.2e-15	30.4
VEE65268.1\|723381_724068_-	Staphylococcus exoprotein expression protein R	NA	NA	NA	NA
VEE65269.1\|724042_724516_-	DoxX	NA	NA	NA	NA
VEE65270.1\|724866_725307_-	Electron transfer DM13	NA	NA	NA	NA
VEE65271.1\|725562_726147_-	Uncharacterised protein	NA	NA	NA	NA
VEE65272.1\|726245_726959_-	7-carboxy-7-deazaguanine synthase	A0A1U9WRB6	Streptococcus_virus	5.0e-52	43.5
VEE65273.1\|726962_727382_-	6-carboxy-5,6,7,8-tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	25.2
VEE65274.1\|727383_728052_-	7-cyano-7-deazaguanine synthase	A0A2H4J8Q7	uncultured_Caudovirales_phage	7.4e-66	56.0
VEE65275.1\|728405_728999_+	Para-aminobenzoate synthase glutamine amidotransferase component II	A0A0P0IKJ1	Acinetobacter_phage	2.4e-36	39.8
VEE65276.1\|728982_730134_+	Para-aminobenzoate synthase component 1	S4VNU7	Pandoravirus	1.0e-22	34.9

DBSCAN-SWA_2

742095 : 756665

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE65286.1\|742095_743154_+	Histidinol-phosphate aminotransferase	A0A0H3TLT9	Faustovirus	7.2e-23	26.6
VEE65287.1\|743498_744041_+	Putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
VEE65288.1\|744819_745734_-	Putative lipid kinase SAR0780	A0A1V0SBJ0	Catovirus	1.5e-08	25.3
VEE65289.1\|746067_747573_-	Di-/tripeptide transporter	A0A0P0IY73	Acinetobacter_phage	1.8e-59	33.0
VEE65290.1\|747909_748410_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	2.2e-51	70.8
VEE65291.1\|748429_749299_-	Predicted permeases	NA	NA	NA	NA
VEE65292.1\|750106_750505_+	ribonucleotide reductase stimulatory protein	A0A2H4J545	uncultured_Caudovirales_phage	3.3e-53	72.7
VEE65293.1\|750467_752573_+	Ribonucleoside-diphosphate reductase subunit alpha 2	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.6
VEE65294.1\|752689_753661_+	Ribonucleoside-diphosphate reductase subunit beta nrdF1	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
VEE65295.1\|753992_754964_+	Iron(III) dicitrate transport system permease protein fecD	A0A2H4IY97	uncultured_Caudovirales_phage	8.6e-140	79.6
VEE65296.1\|754950_755907_+	Iron-uptake system permease protein FeuC	A0A2H4J116	uncultured_Caudovirales_phage	7.7e-08	64.4
VEE65297.1\|755903_756665_+	Probable siderophore transport system ATP-binding protein YusV	Q9EMR9	Amsacta_moorei_entomopoxvirus	3.6e-16	30.6

DBSCAN-SWA_3

788718 : 795174

Streptococcus_phage(33.33%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE65326.1\|788718_789654_+	Thioredoxin reductase	G3MA85	Bacillus_virus	1.1e-83	48.9
VEE65327.1\|790001_790913_+	glmZ(sRNA)-inactivating NTPase	A0A0R8VB27	Thermobifida_phage	1.1e-08	36.1
VEE65328.1\|790909_791911_+	LPPG:FO 2-phospho-L-lactate transferase	A1IMD5	Streptococcus_phage	9.1e-52	39.8
VEE65329.1\|792016_792961_+	Putative sporulation transcription regulator WhiA	Q7AWZ3	Streptococcus_phage	3.1e-54	40.9
VEE65330.1\|793683_794007_+\|holin	holin, SPP1 family	G4KNR4	Staphylococcus_phage	1.1e-43	85.0
VEE65331.1\|794586_795174_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	8.2e-53	55.3

DBSCAN-SWA_4

810838 : 857076

Staphylococcus_phage(82.09%)

terminase,holin,tail,capsid,protease,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE65345.1\|810838_813211_+	Ribonuclease R	Q0GXV6	Lactococcus_phage	9.6e-92	38.8
VEE65346.1\|813232_813697_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	9.6e-81	98.7
VEE65347.1\|814208_815258_-	Tyrosine recombinase XerD	W5R968	Staphylococcus_phage	3.5e-195	98.0
VEE65348.1\|815336_815681_-	Uncharacterised protein	A0A2H4PQN6	Staphylococcus_phage	4.4e-30	58.2
VEE65349.1\|815680_816163_-	Uncharacterised protein	NA	NA	NA	NA
VEE65350.1\|816331_816946_-	Uncharacterised protein	A0A2H4IYV6	uncultured_Caudovirales_phage	4.9e-32	55.8
VEE65351.1\|816963_817677_-	LexA repressor	M9NUL0	Staphylococcus_phage	2.8e-124	94.9
VEE65352.1\|817810_818080_+	transcriptional regulator, y4mF family	H9A0Y0	Staphylococcus_phage	4.8e-40	95.5
VEE65353.1\|818094_818403_+	Uncharacterised protein	S4V9P0	Staphylococcus_phage	4.2e-48	97.1
VEE65354.1\|818443_818641_+	Uncharacterised protein	A0A1W6JPV3	Staphylococcus_phage	1.2e-24	100.0
VEE65355.1\|818710_819343_-	Uncharacterised protein	A7TW95	Staphylococcus_phage	1.0e-96	87.1
VEE65356.1\|819399_820137_+	Uncharacterized phage-encoded protein	Q4ZBV7	Staphylococcus_virus	2.7e-130	98.8
VEE65357.1\|820149_820359_+	Uncharacterised protein	A0A2H4PQR1	Staphylococcus_phage	9.7e-33	100.0
VEE65358.1\|820371_820533_+	Protein of uncharacterised function (DUF1270)	Q4ZDA3	Staphylococcus_virus	1.0e-18	90.6
VEE65359.1\|820626_820929_+	Uncharacterised protein	A0A0F6N3N3	Staphylococcus_phage	1.4e-27	61.6
VEE65360.1\|820933_821194_+	Protein of uncharacterised function (DUF1108)	A0A1P8L6F5	Staphylococcus_phage	3.3e-38	88.4
VEE65361.1\|821203_821476_+	Uncharacterised protein	A0A0H3U2S3	Staphylococcus_phage	2.3e-26	72.3
VEE65362.1\|821447_821669_+	Uncharacterised protein	A0A1X9H047	Staphylococcus_phage	2.0e-28	87.7
VEE65363.1\|821661_822285_+	Protein of uncharacterised function (DUF1071)	B7T0A4	Staphylococcus_virus	6.8e-114	99.5
VEE65364.1\|822284_822719_+	Helix-destabilizing protein	A0A0H3U4B5	Staphylococcus_phage	5.9e-56	73.1
VEE65365.1\|822730_823426_+	Protein of uncharacterised function (DUF968)	A0A2I6PDA6	Staphylococcus_phage	3.5e-127	98.2
VEE65366.1\|823397_824201_+	phage replisome organizer, putative, N-terminal region	A0A2H4JCF5	uncultured_Caudovirales_phage	4.6e-115	95.9
VEE65367.1\|824210_824990_+	DNA replication protein dnaC	A0A0H4J376	Staphylococcus_phage	6.7e-143	98.1
VEE65368.1\|824983_825142_+	Uncharacterised protein	A0A2H4PQI7	Staphylococcus_phage	4.5e-22	100.0
VEE65369.1\|825155_825377_+	Protein of uncharacterised function (DUF3269)	A0A059T665	Staphylococcus_phage	4.6e-33	94.4
VEE65370.1\|825386_825791_+	Protein of uncharacterised function (DUF1064)	Q6R835	Staphylococcus_virus	2.3e-70	97.8
VEE65371.1\|825795_825981_+	Protein of uncharacterised function (DUF3113)	A0A059T620	Staphylococcus_phage	6.0e-26	95.1
VEE65372.1\|825981_826341_+	PVL ORF-50-like family	B7T0B4	Staphylococcus_virus	1.7e-32	64.7
VEE65373.1\|826344_826587_+	Phage Conserved Open Reading Frame 51	A0A2I6PDB4	Staphylococcus_phage	1.4e-38	95.0
VEE65374.1\|826597_827005_+	Uncharacterised protein	A0A0E3T8H9	Staphylococcus_phage	9.7e-61	84.3
VEE65375.1\|827001_827472_+	Methyltransferase domain	A8ATY8	Listeria_phage	4.4e-65	74.2
VEE65376.1\|827468_827858_+	YopX protein	M4I0R5	Staphylococcus_phage	1.3e-49	77.5
VEE65377.1\|827854_828364_+	Uncharacterised protein	A0A2H4JGK2	uncultured_Caudovirales_phage	2.3e-88	95.2
VEE65378.1\|828360_828984_+	Uncharacterised protein	C8CH13	Staphylococcus_phage	7.7e-25	93.7
VEE65379.1\|828976_829219_+	Protein of uncharacterised function (DUF1024)	Q9G013	Staphylococcus_virus	1.1e-35	96.2
VEE65380.1\|829218_829755_+	Uncharacterized protein conserved in bacteria	A0A0H3U2Z8	Staphylococcus_phage	7.2e-96	100.0
VEE65381.1\|829791_830037_+	Uncharacterised protein	A0A2I6PDW7	Staphylococcus_phage	5.0e-36	100.0
VEE65382.1\|830033_830240_+	Protein of uncharacterised function (DUF1381)	A0A2I6PDB6	Staphylococcus_phage	7.9e-27	89.7
VEE65383.1\|830236_830440_+	Uncharacterised protein	A0A2I6PEQ8	Staphylococcus_phage	1.4e-28	95.5
VEE65384.1\|830432_830819_+	Uncharacterised protein	A0A1X9IGZ2	Staphylococcus_phage	1.3e-62	97.7
VEE65385.1\|830815_830965_+	Transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	1.4e-17	98.0
VEE65386.1\|830964_831165_+	Protein of uncharacterised function (DUF1514)	R9QT57	Staphylococcus_phage	1.5e-27	97.0
VEE65387.1\|831192_831609_+	phage transcriptional regulator, RinA family	A0A1X9H0U8	Staphylococcus_phage	2.9e-76	100.0
VEE65388.1\|831840_832140_+	HNH endonuclease	A0A2I6PDH9	Staphylococcus_phage	3.5e-52	100.0
VEE65389.1\|832269_832614_+	Uncharacterised protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
VEE65390.1\|832610_834272_+\|terminase	Phage terminase-like protein, large subunit	G4KNQ0	Staphylococcus_phage	0.0e+00	98.6
VEE65391.1\|834287_835475_+\|portal	phage portal protein, HK97 family	A0A2I6PDI1	Staphylococcus_phage	2.1e-204	91.9
VEE65392.1\|835458_836196_+\|protease	ATP-dependent Clp protease proteolytic subunit 1	Q8LTH1	Staphylococcus_phage	2.0e-125	95.9
VEE65393.1\|836219_837365_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A1W6JPL4	Staphylococcus_phage	7.9e-209	97.4
VEE65394.1\|837385_837670_+	Uncharacterised protein	A0A1W6JPL8	Staphylococcus_phage	4.5e-41	92.6
VEE65395.1\|837647_837944_+	Uncharacterised protein	A0A2I6PDJ5	Staphylococcus_phage	3.2e-37	79.6
VEE65396.1\|837927_838290_+	Uncharacterised protein	G4KNQ4	Staphylococcus_phage	4.4e-57	87.5
VEE65397.1\|838286_838691_+	Uncharacterised protein	A0A0H3U2V1	Staphylococcus_phage	1.5e-66	94.0
VEE65398.1\|838687_839095_+	Uncharacterised protein	G4KNQ6	Staphylococcus_phage	3.7e-68	95.6
VEE65399.1\|839095_839737_+\|tail	phage major tail protein, phi13 family	A0A075M4C9	Staphylococcus_phage	2.0e-113	94.3
VEE65400.1\|840052_840403_+	Uncharacterised protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
VEE65401.1\|840453_840591_+	Uncharacterised protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
VEE65402.1\|840647_845174_+	putative peptidase	A0A1X9H017	Staphylococcus_phage	0.0e+00	94.6
VEE65403.1\|845173_846658_+	Phage-related protein	G4KNR0	Staphylococcus_phage	1.4e-295	98.2
VEE65404.1\|846673_851281_+	phage minor structural protein, N-terminal region	A0A068A201	Staphylococcus_phage	0.0e+00	65.6
VEE65405.1\|851273_851426_+	Uncharacterised protein	A0A1W6JPL6	Staphylococcus_phage	2.9e-18	98.0
VEE65406.1\|851472_851760_+	Uncharacterised protein	A0A1X9H0N7	Staphylococcus_phage	6.4e-43	98.9
VEE65407.1\|851815_852190_+	Uncharacterised protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
VEE65408.1\|852316_852619_+\|holin	holin, SPP1 family	A0A2I6PF56	Staphylococcus_phage	1.2e-47	99.0
VEE65409.1\|852629_854084_+	N-acetylmuramoyl-L-alanine amidase CwlD	A0A2I6PF47	Staphylococcus_phage	5.9e-286	99.0
VEE65410.1\|854548_854755_+	Uncharacterised protein	A0A2H4PQT0	Staphylococcus_phage	8.4e-29	95.6
VEE65411.1\|854768_854969_+	Uncharacterised protein	A0A2H4PQS9	Staphylococcus_phage	5.6e-30	95.5
VEE65412.1\|855849_857076_-	Transposase IS116/IS110/IS902 family	M1NSC9	Streptococcus_phage	2.2e-92	51.6

DBSCAN-SWA_5

1049757 : 1058227

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE65595.1\|1049757_1050240_+	N5-carboxyaminoimidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.4e-19	41.3
VEE65596.1\|1050226_1051351_+	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
VEE65597.1\|1051354_1052059_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	1.4e-46	41.6
VEE65598.1\|1052058_1052319_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
VEE65599.1\|1052320_1052992_+	Phosphoribosylformylglycinamidine synthase 1	NA	NA	NA	NA
VEE65600.1\|1052984_1055174_+	Phosphoribosylformylglycinamidine synthase 2	A6N228	Microbacterium_phage	2.4e-142	40.0
VEE65601.1\|1055152_1056637_+	Amidophosphoribosyltransferase precursor	A0A0M3SGR2	Mollivirus	6.7e-43	31.1
VEE65602.1\|1056629_1057658_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.8e-63	42.0
VEE65603.1\|1057660_1058227_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.2e-28	39.0

DBSCAN-SWA_6

1309141 : 1356417

Staphylococcus_phage(61.7%)

tRNA,holin,transposase,tail,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE65827.1\|1309141_1310077_+\|tRNA	tRNA dimethylallyltransferase	NA	NA	NA	NA
VEE65828.1\|1310091_1310325_+	RNA-binding protein Hfq	NA	NA	NA	NA
VEE65829.1\|1310544_1311021_-	Glutathione peroxidase homolog BsaA	A0A0M5HSM9	Turkeypox_virus	1.6e-14	36.2
VEE65830.1\|1311132_1312374_+	GTP-binding protein HflX	NA	NA	NA	NA
VEE65831.1\|1312389_1313628_+	methionine gamma-lyase	NA	NA	NA	NA
VEE65832.1\|1313869_1314238_+	HTH-type transcriptional regulator glnR	NA	NA	NA	NA
VEE65833.1\|1314256_1315597_+	Glutamine synthetase	NA	NA	NA	NA
VEE65834.1\|1315736_1316864_-	Tyrosine recombinase XerC	A0A0C5AN64	Paenibacillus_phage	4.3e-34	30.4
VEE65835.1\|1316916_1317612_-	Host cell surface-exposed lipoprotein	NA	NA	NA	NA
VEE65836.1\|1317623_1318007_-	Uncharacterised protein	NA	NA	NA	NA
VEE65837.1\|1318153_1318522_-	Helix-turn-helix domain	S4SVC5	Staphylococcus_phage	3.1e-18	43.4
VEE65838.1\|1318673_1318883_+	Helix-turn-helix domain	A7TWF1	Staphylococcus_phage	7.0e-15	59.7
VEE65839.1\|1318926_1319202_+	Uncharacterised protein	NA	NA	NA	NA
VEE65840.1\|1319206_1319380_+	Uncharacterised protein	NA	NA	NA	NA
VEE65841.1\|1319372_1319534_+	Protein of uncharacterised function (DUF1270)	R4IH12	Staphylococcus_phage	1.1e-12	69.8
VEE65842.1\|1319620_1319938_+	Uncharacterised protein	W5RAK4	Staphylococcus_phage	2.1e-39	80.6
VEE65843.1\|1319903_1320194_+	Uncharacterised protein	A0A1P8L6F4	Staphylococcus_phage	3.2e-18	53.6
VEE65844.1\|1320198_1320735_+	Mu-like prophage host-nuclease inhibitor protein Gam	A0A0H3U480	Staphylococcus_phage	4.1e-75	81.4
VEE65845.1\|1320735_1321515_+	Uncharacterised protein	A0A1W6JPW0	Staphylococcus_phage	3.0e-127	88.0
VEE65846.1\|1321541_1322090_+	Uncharacterised protein	A7TWM8	Staphylococcus_phage	3.8e-92	93.5
VEE65847.1\|1322103_1323084_+	Replication initiation/membrane attachment protein	A0A1P8L6F0	Staphylococcus_phage	5.4e-49	49.4
VEE65848.1\|1323390_1323549_+	Uncharacterised protein	A0A1W6JQ22	Staphylococcus_phage	2.3e-18	92.3
VEE65849.1\|1323554_1323866_+	Uncharacterised protein	NA	NA	NA	NA
VEE65850.1\|1323858_1324389_+	Uncharacterised protein	A0A1P8VVP1	Streptococcus_phage	4.0e-22	39.1
VEE65851.1\|1324634_1325099_+	Uncharacterised protein	C9E2P0	Enterococcus_phage	9.5e-20	42.4
VEE65852.1\|1325099_1325333_+	Uncharacterised protein	NA	NA	NA	NA
VEE65853.1\|1325375_1325864_+	positive control sigma-like factor	R9TMH4	Paenibacillus_phage	3.7e-06	27.7
VEE65854.1\|1326082_1326268_+	YcfA-like protein	A0A0D4DC32	Acinetobacter_phage	4.6e-18	73.7
VEE65855.1\|1326303_1326699_+	Uncharacterised protein family (UPF0150)	A0A0C5AN56	Paenibacillus_phage	1.2e-23	47.8
VEE65856.1\|1326760_1327189_+	Uncharacterised protein	A1EAE0	Streptococcus_phage	1.2e-24	50.9
VEE65857.1\|1327175_1328450_+	Uncharacterized conserved protein	Q4ZE37	Staphylococcus_virus	2.5e-195	76.7
VEE65858.1\|1328462_1329911_+\|portal	phage portal protein, SPP1 family	Q4ZE36	Staphylococcus_virus	3.0e-197	70.0
VEE65859.1\|1329900_1331247_+	NAD+--asparagine ADP-ribosyltransferase	A0A1J0MFV1	Staphylococcus_phage	1.5e-121	49.3
VEE65860.1\|1331253_1331445_+	Uncharacterised protein	A0A1J0MG79	Staphylococcus_phage	7.1e-06	43.3
VEE65861.1\|1331608_1332187_+	Uncharacterised protein	Q4ZE34	Staphylococcus_virus	1.0e-10	55.4
VEE65862.1\|1332205_1333105_+	Uncharacterised protein	Q4ZE33	Staphylococcus_virus	6.8e-99	61.5
VEE65863.1\|1333185_1333707_+	Bacterial Ig-like domain (group 2)	NA	NA	NA	NA
VEE65864.1\|1333681_1334011_+\|head,tail	Phage gp6-like head-tail connector protein	A0A1J0MFR4	Staphylococcus_phage	2.4e-25	56.5
VEE65865.1\|1334010_1334313_+	Uncharacterised protein	A0A1J0MFJ3	Staphylococcus_phage	1.5e-18	43.4
VEE65866.1\|1334313_1334664_+	phage protein, HK97 gp10 family	H9A0N6	Staphylococcus_phage	3.1e-31	55.7
VEE65867.1\|1334673_1335069_+	Uncharacterised protein	A0A1J0MF66	Staphylococcus_phage	5.6e-21	38.8
VEE65868.1\|1335080_1335680_+\|tail	phage major tail protein, TP901-1 family	H9A0N8	Staphylococcus_phage	2.5e-17	48.0
VEE65869.1\|1335741_1336086_+	Phage protein	A0A1J0MFH0	Staphylococcus_phage	2.2e-34	58.9
VEE65870.1\|1336082_1336490_+	Uncharacterised protein	Q4ZE25	Staphylococcus_virus	2.0e-37	73.2
VEE65871.1\|1336501_1339672_+	Phage-related protein	Q4ZE24	Staphylococcus_virus	6.3e-91	56.9
VEE65872.1\|1339686_1340622_+\|tail	Phage tail protein	A0A1J0MF79	Staphylococcus_phage	7.8e-98	55.6
VEE65873.1\|1340630_1342316_+\|tail	Prophage endopeptidase tail	Q4ZE19	Staphylococcus_virus	8.0e-109	46.8
VEE65874.1\|1342334_1343348_+	GDSL-like Lipase/Acylhydrolase	Q8LTH0	Staphylococcus_virus	7.7e-99	54.0
VEE65875.1\|1343366_1344752_+	Uncharacterised protein	A0A1J0MFK8	Staphylococcus_phage	5.2e-106	44.9
VEE65876.1\|1344764_1345154_+\|holin	Phage-related holin (Lysis protein)	A0A1S6KVE0	Staphylococcus_phage	1.8e-16	37.5
VEE65877.1\|1345218_1346139_+	N-acetylmuramoyl-L-alanine amidase CwlA precursor	A0A1W6JQL2	Staphylococcus_phage	2.0e-66	51.5
VEE65878.1\|1346338_1346467_+	Uncharacterised protein	A0A0F6N3H2	Staphylococcus_phage	7.5e-12	85.7
VEE65879.1\|1346648_1346834_+	Uncharacterised protein	A0A0F6N3H3	Staphylococcus_phage	1.9e-16	70.5
VEE65880.1\|1347029_1347533_+	Uncharacterised protein	NA	NA	NA	NA
VEE65881.1\|1347545_1347860_+	Uncharacterised protein	NA	NA	NA	NA
VEE65882.1\|1347859_1348288_+	preprotein translocase subunit SecB	NA	NA	NA	NA
VEE65883.1\|1348691_1348898_+	Uncharacterised protein	A0A1W6JNK0	Staphylococcus_phage	2.1e-11	58.0
VEE65884.1\|1349462_1350755_+	Transposase and inactivated derivatives	A0A2L1IVA1	Escherichia_phage	2.3e-15	31.9
VEE65885.1\|1350744_1351509_+\|transposase	transposase/IS protein	A0A059NT77	Lactococcus_phage	2.0e-54	44.2
VEE65886.1\|1352579_1352705_+	Uncharacterised protein	NA	NA	NA	NA
VEE65887.1\|1352691_1352904_+	Uncharacterised protein	A0A1W6JNK0	Staphylococcus_phage	2.1e-19	73.9
VEE65888.1\|1353199_1353400_+	Uncharacterised protein	A0A2H4PQT0	Staphylococcus_phage	4.1e-12	57.8
VEE65889.1\|1354648_1354834_+	Uncharacterised protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
VEE65890.1\|1355345_1355762_+	Uncharacterised protein	NA	NA	NA	NA
VEE65891.1\|1356153_1356417_+	Uncharacterised protein	M9NSU5	Staphylococcus_phage	3.1e-20	89.3

DBSCAN-SWA_7

1711249 : 1720293

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE66200.1\|1711249_1711768_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.5e-29	47.2
VEE66201.1\|1711789_1714063_-	Single-stranded-DNA-specific exonuclease recJ	A7KV88	Bacillus_phage	1.1e-63	29.2
VEE66202.1\|1714265_1716545_-	bifunctional preprotein translocase subunit SecD/SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.0e-30	35.4
VEE66203.1\|1716820_1717081_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	6.3e-05	35.3
VEE66204.1\|1717099_1718239_-\|tRNA	Queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.9e-85	45.0
VEE66205.1\|1718261_1719287_-\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
VEE66206.1\|1719288_1720293_-	Holliday junction ATP-dependent DNA helicase RuvB	B3GAM6	uncultured_virus	5.8e-06	29.9

DBSCAN-SWA_8

1844339 : 1909372

Staphylococcus_phage(94.0%)

tRNA,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE66311.1\|1844339_1850876_-	ECM-binding protein homolog	A0A2H4PQU6	Staphylococcus_phage	4.6e-277	85.2
VEE66312.1\|1851204_1851516_-	molybdopterin biosynthesis protein MoeB	A0A2H4PQR9	Staphylococcus_phage	1.0e-46	89.3
VEE66313.1\|1851537_1853955_-\|tRNA	Leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	97.3
VEE66314.1\|1854243_1855425_-	Multidrug resistance protein MdtH	A0A2H4PQR6	Staphylococcus_phage	2.1e-212	96.9
VEE66315.1\|1855532_1856486_+	coproporphyrinogen III oxidase	A0A2H4PQV5	Staphylococcus_phage	1.0e-76	95.9
VEE66316.1\|1856482_1857046_+	Trans-aconitate methyltransferase	A0A2H4PQV0	Staphylococcus_phage	1.1e-86	83.4
VEE66317.1\|1857152_1857554_-	Repressor of toxins	NA	NA	NA	NA
VEE66318.1\|1858156_1858984_-	Phospholipase ytpA	NA	NA	NA	NA
VEE66319.1\|1859216_1860218_+	Proline dehydrogenase 1	A0A2H4PQT6	Staphylococcus_phage	3.6e-173	92.2
VEE66320.1\|1860339_1860801_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-66	94.1
VEE66321.1\|1860813_1861995_-	Riboflavin biosynthesis protein ribBA	A0A2H4PQS2	Staphylococcus_phage	7.8e-212	91.3
VEE66322.1\|1862005_1862638_-	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	1.9e-100	88.6
VEE66323.1\|1862644_1863688_-	Riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	5.9e-179	88.6
VEE66324.1\|1864149_1865652_-	Uncharacterized protein conserved in bacteria	A0A2H4PQX2	Staphylococcus_phage	2.8e-28	94.4
VEE66325.1\|1866163_1866478_+	Transcriptional repressor smtB homolog	A0A2H4PQT4	Staphylococcus_phage	9.5e-40	78.4
VEE66326.1\|1866477_1867770_+	Arsenic efflux pump protein	A0A2H4PQU3	Staphylococcus_phage	4.3e-195	85.8
VEE66327.1\|1868015_1868873_-	Bifunctional autolysin precursor	A0A1W6JNR1	Staphylococcus_phage	3.7e-38	42.3
VEE66328.1\|1869149_1869374_-	Uncharacterised protein	NA	NA	NA	NA
VEE66329.1\|1869573_1870050_+	RNA polymerase sigma factor sigS	A0A2H4PQT5	Staphylococcus_phage	1.4e-58	74.4
VEE66330.1\|1870063_1870501_+	Uncharacterised protein	NA	NA	NA	NA
VEE66331.1\|1870493_1870937_-	Uncharacterised protein	A0A2H4PQT8	Staphylococcus_phage	5.8e-43	67.3
VEE66332.1\|1871221_1871842_+\|protease	exosortase E/protease, VPEID-CTERM system	NA	NA	NA	NA
VEE66333.1\|1872358_1873072_-	Transaldolase	M1PR54	Cyanophage	9.4e-19	35.3
VEE66334.1\|1873330_1873633_+	Uncharacterised protein	NA	NA	NA	NA
VEE66335.1\|1873792_1874236_+	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	3.0e-47	78.5
VEE66336.1\|1874232_1874586_+	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	8.0e-11	40.2
VEE66337.1\|1874970_1875804_-	Glyoxal reductase	A0A2H4PQR8	Staphylococcus_phage	1.0e-141	87.0
VEE66338.1\|1875929_1876040_-	Uncharacterised protein	NA	NA	NA	NA
VEE66339.1\|1876064_1876973_-	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	1.1e-136	98.0
VEE66340.1\|1877097_1878291_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.2e-215	98.5
VEE66341.1\|1878661_1880254_+	Phosphoenolpyruvate carboxykinase [ATP]	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.4
VEE66342.1\|1880516_1881287_-	Prolyl oligopeptidase family	A0A2H4PQM6	Staphylococcus_phage	6.2e-125	86.3
VEE66343.1\|1881267_1881747_-	Putative 8-oxo-dGTP diphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.3e-77	91.2
VEE66344.1\|1881807_1882065_+	Putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	1.0e-44	96.5
VEE66345.1\|1882061_1883063_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	7.7e-160	86.2
VEE66346.1\|1883067_1884546_-	2-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.2e-265	91.9
VEE66347.1\|1884708_1885188_-	Uncharacterised protein	A0A2H4PQN7	Staphylococcus_phage	8.5e-56	68.3
VEE66348.1\|1885498_1886095_+	SPBc2 prophage-derived endonuclease yokF precursor	A0A2H4PQM8	Staphylococcus_phage	1.9e-12	80.0
VEE66349.1\|1886179_1887184_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	8.5e-74	93.1
VEE66350.1\|1887260_1887887_+	Uncharacterised protein	A0A2H4PQM7	Staphylococcus_phage	8.4e-80	83.7
VEE66351.1\|1887886_1888657_+	SEA	A0EX09	Staphylococcus_phage	1.0e-26	39.7
VEE66352.1\|1888683_1889436_+	SEC1	A0A097PAT7	Streptococcus_pyogenes_phage	6.8e-52	47.4
VEE66353.1\|1890087_1890591_+	Uncharacterised protein	NA	NA	NA	NA
VEE66354.1\|1890632_1890749_-	Uncharacterised protein	NA	NA	NA	NA
VEE66355.1\|1891192_1891771_+	Uncharacterised protein	A0A2H4PQH6	Staphylococcus_phage	3.0e-39	49.2
VEE66356.1\|1892206_1892905_-	lantibiotic protection ABC transporter permease subunit, MutG family	A0A2H4PQH0	Staphylococcus_phage	6.0e-111	92.2
VEE66357.1\|1892901_1893663_-	Uncharacterized protein conserved in bacteria	A0A2H4PQH2	Staphylococcus_phage	2.5e-126	94.9
VEE66358.1\|1893659_1894352_-	ABC-type transporter ATP-binding protein EcsA	A0A2H4PQG7	Staphylococcus_phage	8.6e-118	95.2
VEE66359.1\|1894374_1895748_-	Thermophilic serine proteinase precursor	A0A2H4PQH1	Staphylococcus_phage	1.4e-239	92.3
VEE66360.1\|1895757_1896276_-	Epidermin decarboxylase	A0A2H4PQG9	Staphylococcus_phage	1.4e-91	94.8
VEE66361.1\|1896291_1897536_-	Nisin biosynthesis protein nisC	A0A2H4PQH9	Staphylococcus_phage	1.0e-209	87.7
VEE66362.1\|1897528_1900525_-\|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	89.1
VEE66363.1\|1900588_1900732_-	Lantibiotic gallidermin precursor	A0A2H4PQH4	Staphylococcus_phage	3.9e-17	89.4
VEE66364.1\|1901436_1901580_-	Lantibiotic gallidermin precursor	NA	NA	NA	NA
VEE66365.1\|1902558_1903020_+	Uncharacterised protein	A0EWV3	Staphylococcus_phage	7.4e-17	89.6
VEE66366.1\|1904074_1904851_-	SEG	NA	NA	NA	NA
VEE66367.1\|1905134_1905890_-	SEA	A0A075M4C7	Staphylococcus_phage	6.7e-39	40.0
VEE66368.1\|1905924_1906713_-	SEC3	A0A097PAT7	Streptococcus_pyogenes_phage	4.2e-44	42.2
VEE66369.1\|1906867_1907596_-	SEA	A0A1X9H080	Staphylococcus_phage	5.1e-28	39.2
VEE66370.1\|1907630_1908350_-	SED	A0EX09	Staphylococcus_phage	8.0e-26	34.3
VEE66371.1\|1908631_1909372_-	SED	A0A1X9H080	Staphylococcus_phage	7.0e-33	39.8

Anti-CRISPR protein detection

Acr_ID: LR134304.1|VEE66364.1|1901436_1901580_-|Lantibiotic-gallidermin-precursor

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR134304.1|VEE66364.1|1901436_1901580_-|Lantibiotic-gallidermin-precursor

1901436_1901580_-

47 aa aa

1844339-1909372

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LR134304_4	Orphan	4.1\|1776953\|33\|LR134304\|CRISPRCasFinder	1776953-1776985	33	1872201-1872169	0

1. spacer 4.1|1776953|33|LR134304|CRISPRCasFinder matches to LR134304 position: 1872201-1872169, mismatch: 0

tgcacattatcgtaagctgacttttcgtcagct	CRISPR spacer
tgcacattatcgtaagctgacttttcgtcagct	Protospacer
*********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134304

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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