CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134309	Pseudomonas aeruginosa strain NCTC12903 genome assembly, chromosome: 1	3 crisprs	csa3,DEDDh,cas3,PD-DExK,DinG,RT,WYL	0	1	8	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134309_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134309_1

352044-352157

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134309_1

>merge|LR134309|1|352044-352157|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>LR134309|1|1|352044-352157|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
LR134309.1\|VEE85003.1\|357337_357949_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
LR134309.1\|VEE85006.1\|359856_360486_+\|putative-proline-hydroxylase	unknown	unknown	gnl\|CDD\|226274
LR134309.1\|VEE85000.1\|353200_355588_-\|putative-penicillin-amidase	unknown	unknown	gnl\|CDD\|225241
LR134309.1\|VEE84988.1\|338892_339771_-\|N-carbamoylputrescine-amidohydrolase	unknown	unknown	gnl\|CDD\|274553
LR134309.1\|VEE84994.1\|345848_347219_+\|aminotransferase	unknown	unknown	gnl\|CDD\|180994
LR134309.1\|VEE84991.1\|341976_343353_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
LR134309.1\|VEE84996.1\|348856_349954_+\|polyamine-transport-protein	unknown	unknown	gnl\|CDD\|270377
LR134309.1\|VEE84990.1\|340659_341721_-\|periplasmic-polyamine-binding-protein	unknown	unknown	gnl\|CDD\|270377
LR134309.1\|VEE84997.1\|350008_351163_+\|spermidine/putrescine-ABC-transporter-ATPase	unknown	unknown	gnl\|CDD\|183226
LR134309.1\|VEE84992.1\|343631_344384_+\|putative-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|336781
LR134309.1\|VEE85007.1\|360507_361062_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134309.1\|VEE84993.1\|344424_345783_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
LR134309.1\|VEE85009.1\|361327_361822_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|224597
LR134309.1\|VEE85001.1\|355698_356751_+\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
LR134309.1\|VEE84989.1\|339933_340599_-\|transcriptional-regulator-AguR	unknown	unknown	gnl\|CDD\|224228
LR134309.1\|VEE85005.1\|358986_359739_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	unknown
LR134309.1\|VEE84995.1\|347334_348438_+\|polyamine-transport-protein	unknown	unknown	gnl\|CDD\|270377
LR134309.1\|VEE85008.1\|361124_361214_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134309.1\|VEE85004.1\|358025_358967_+\|putative-lysophospholipase	unknown	unknown	gnl\|CDD\|225176
LR134309.1\|VEE85002.1\|356729_357233_-\|transcriptional-regulator	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134309.1\|VEE85003.1\|357337_357949_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
LR134309.1\|VEE85006.1\|359856_360486_+\|putative-proline-hydroxylase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	3.27136e-68
LR134309.1\|VEE85000.1\|353200_355588_-\|putative-penicillin-amidase	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
LR134309.1\|VEE84988.1\|338892_339771_-\|N-carbamoylputrescine-amidohydrolase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
LR134309.1\|VEE84994.1\|345848_347219_+\|aminotransferase	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
LR134309.1\|VEE84991.1\|341976_343353_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
LR134309.1\|VEE84996.1\|348856_349954_+\|polyamine-transport-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
LR134309.1\|VEE84990.1\|340659_341721_-\|periplasmic-polyamine-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
LR134309.1\|VEE84997.1\|350008_351163_+\|spermidine/putrescine-ABC-transporter-ATPase	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
LR134309.1\|VEE84992.1\|343631_344384_+\|putative-glutamine-amidotransferase	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	4.197e-109
LR134309.1\|VEE84993.1\|344424_345783_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
LR134309.1\|VEE85009.1\|361327_361822_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
LR134309.1\|VEE85001.1\|355698_356751_+\|putative-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
LR134309.1\|VEE84989.1\|339933_340599_-\|transcriptional-regulator-AguR	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.56691e-09
LR134309.1\|VEE84995.1\|347334_348438_+\|polyamine-transport-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
LR134309.1\|VEE85004.1\|358025_358967_+\|putative-lysophospholipase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.07199e-56

>LR134309.1|VEE84997.1|350008_351163_+|spermidine/putrescine-ABC-transporter-ATPase
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>LR134309.1|VEE84996.1|348856_349954_+|polyamine-transport-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>LR134309.1|VEE84995.1|347334_348438_+|polyamine-transport-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>LR134309.1|VEE84994.1|345848_347219_+|aminotransferase
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>LR134309.1|VEE84993.1|344424_345783_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>LR134309.1|VEE84992.1|343631_344384_+|putative-glutamine-amidotransferase
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGDSIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>LR134309.1|VEE84991.1|341976_343353_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>LR134309.1|VEE84990.1|340659_341721_-|periplasmic-polyamine-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>LR134309.1|VEE84989.1|339933_340599_-|transcriptional-regulator-AguR
MQPTSSTRKPRASSQARIAAILDAARGLLADEGISGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>LR134309.1|VEE84988.1|338892_339771_-|N-carbamoylputrescine-amidohydrolase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>LR134309.1|VEE85000.1|353200_355588_-|putative-penicillin-amidase
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRTAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>LR134309.1|VEE85001.1|355698_356751_+|putative-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>LR134309.1|VEE85002.1|356729_357233_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>LR134309.1|VEE85003.1|357337_357949_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>LR134309.1|VEE85004.1|358025_358967_+|putative-lysophospholipase
MSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLCSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>LR134309.1|VEE85005.1|358986_359739_-|Uncharacterized-protein-conserved-in-bacteria
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>LR134309.1|VEE85006.1|359856_360486_+|putative-proline-hydroxylase
MHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>LR134309.1|VEE85007.1|360507_361062_-|Uncharacterised-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGHAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>LR134309.1|VEE85008.1|361124_361214_+|Uncharacterised-protein
MGRPQFYPKDRQEIALVPAIRALERYREA
>LR134309.1|VEE85009.1|361327_361822_+|purine-nucleoside-phosphorylase
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG

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Crispr_ID: LR134309_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134309_2

1850107-1850208

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LR134309_2

>merge|LR134309|2|1850107-1850208|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>LR134309|2|2|1850107-1850208|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
LR134309.1\|VEE86420.1\|1856916_1857558_+\|acyl-carrier-protein-phosphodiesterase	unknown	unknown	gnl\|CDD\|224103
LR134309.1\|VEE86417.1\|1854489_1855317_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|131480
LR134309.1\|VEE86415.1\|1852049_1853882_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|224055
LR134309.1\|VEE86404.1\|1841446_1842250_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
LR134309.1\|VEE86406.1\|1843788_1843974_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225746
LR134309.1\|VEE86411.1\|1849191_1849818_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391
LR134309.1\|VEE86419.1\|1856452_1856770_+\|3-phosphoglycerate-kinase	unknown	unknown	unknown
LR134309.1\|VEE86418.1\|1855323_1856253_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
LR134309.1\|VEE86422.1\|1858571_1858907_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
LR134309.1\|VEE86409.1\|1845650_1847306_+\|cation/acetate-symporter	unknown	unknown	gnl\|CDD\|236495
LR134309.1\|VEE86413.1\|1850344_1851469_+\|acyl--n-acyltransferase	unknown	unknown	gnl\|CDD\|225688
LR134309.1\|VEE86403.1\|1840448_1841306_-\|putative-pirin-related-protein	unknown	unknown	gnl\|CDD\|224655
LR134309.1\|VEE86414.1\|1851501_1851768_-\|topoisomerase-II	unknown	unknown	gnl\|CDD\|371321
LR134309.1\|VEE86421.1\|1857662_1858562_-\|permease	unknown	unknown	gnl\|CDD\|307170
LR134309.1\|VEE86410.1\|1847395_1849195_+\|putative-signal-transduction-protein	unknown	unknown	gnl\|CDD\|225457
LR134309.1\|VEE86407.1\|1844267_1845125_+\|glycine-betaine-binding-protein	unknown	unknown	gnl\|CDD\|270357
LR134309.1\|VEE86405.1\|1842253_1843615_-\|putative-serine-protein-kinase-PrkA	unknown	unknown	unknown
LR134309.1\|VEE86416.1\|1853944_1854508_-\|peptidyl-prolyl-cis-trans-isomerase-A	unknown	unknown	gnl\|CDD\|182824
LR134309.1\|VEE86408.1\|1845342_1845654_+\|membrane-protein	unknown	unknown	gnl\|CDD\|225704
LR134309.1\|VEE86412.1\|1849926_1850085_+\|Protein-of-uncharacterised-function-(DUF3309)	unknown	unknown	gnl\|CDD\|378708

Protein	Function_ID	Function_description	E-value
LR134309.1\|VEE86417.1\|1854489_1855317_-\|alpha/beta-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	9.99012e-42
LR134309.1\|VEE86415.1\|1852049_1853882_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.066e-156
LR134309.1\|VEE86404.1\|1841446_1842250_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	1.05866e-100
LR134309.1\|VEE86406.1\|1843788_1843974_-\|membrane-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	1.7036e-27
LR134309.1\|VEE86411.1\|1849191_1849818_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94
LR134309.1\|VEE86418.1\|1855323_1856253_-\|transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
LR134309.1\|VEE86422.1\|1858571_1858907_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
LR134309.1\|VEE86409.1\|1845650_1847306_+\|cation/acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
LR134309.1\|VEE86413.1\|1850344_1851469_+\|acyl--n-acyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
LR134309.1\|VEE86403.1\|1840448_1841306_-\|putative-pirin-related-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.4231e-96
LR134309.1\|VEE86414.1\|1851501_1851768_-\|topoisomerase-II	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
LR134309.1\|VEE86421.1\|1857662_1858562_-\|permease	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
LR134309.1\|VEE86410.1\|1847395_1849195_+\|putative-signal-transduction-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
LR134309.1\|VEE86407.1\|1844267_1845125_+\|glycine-betaine-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.52249e-117
LR134309.1\|VEE86420.1\|1856916_1857558_+\|acyl-carrier-protein-phosphodiesterase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
LR134309.1\|VEE86416.1\|1853944_1854508_-\|peptidyl-prolyl-cis-trans-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
LR134309.1\|VEE86408.1\|1845342_1845654_+\|membrane-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
LR134309.1\|VEE86412.1\|1849926_1850085_+\|Protein-of-uncharacterised-function-(DUF3309)	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06

>LR134309.1|VEE86412.1|1849926_1850085_+|Protein-of-uncharacterised-function-(DUF3309)
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>LR134309.1|VEE86411.1|1849191_1849818_+|DNA-polymerase-III-subunit-epsilon
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>LR134309.1|VEE86410.1|1847395_1849195_+|putative-signal-transduction-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>LR134309.1|VEE86409.1|1845650_1847306_+|cation/acetate-symporter
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>LR134309.1|VEE86408.1|1845342_1845654_+|membrane-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>LR134309.1|VEE86407.1|1844267_1845125_+|glycine-betaine-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANSIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWKDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>LR134309.1|VEE86406.1|1843788_1843974_-|membrane-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPG
>LR134309.1|VEE86405.1|1842253_1843615_-|putative-serine-protein-kinase-PrkA
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTKVASAALTQQAGN
>LR134309.1|VEE86404.1|1841446_1842250_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADEAAAPAELPPRQLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGLYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>LR134309.1|VEE86403.1|1840448_1841306_-|putative-pirin-related-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>LR134309.1|VEE86413.1|1850344_1851469_+|acyl--n-acyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEDEGLQGLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>LR134309.1|VEE86414.1|1851501_1851768_-|topoisomerase-II
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>LR134309.1|VEE86415.1|1852049_1853882_-|ABC-transporter-ATP-binding-protein/permease
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>LR134309.1|VEE86416.1|1853944_1854508_-|peptidyl-prolyl-cis-trans-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>LR134309.1|VEE86417.1|1854489_1855317_-|alpha/beta-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGRYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRTIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>LR134309.1|VEE86418.1|1855323_1856253_-|transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>LR134309.1|VEE86419.1|1856452_1856770_+|3-phosphoglycerate-kinase
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>LR134309.1|VEE86420.1|1856916_1857558_+|acyl-carrier-protein-phosphodiesterase
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>LR134309.1|VEE86421.1|1857662_1858562_-|permease
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>LR134309.1|VEE86422.1|1858571_1858907_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA

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Crispr_ID: LR134309_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134309_3

5280899-5281061

Orphan

Consensus_repeat	Method
CCCTACGGACCGGCGCTCCGCTGGCCCAACGTGGTGTAGGGCGAATAACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134309_3

>merge|LR134309|3|5280899-5281061|CRISPRCasFinder
CCCTACGGACCGGCGCTCCGCTGGCCCAACGTGGTGTAGGGCGAATAACCGCCACGCGGTTATCCGCCATTTCAGACGCCTCACGGCGAATAACGCCTGGGGCGTTATCCACCCTACGGACCGGCGCTCCGCTGGCCCAACCTGGTGTAGGGCGAATAACCGC

>LR134309|3|3|5280899-5281061|CRISPRCasFinder
CCCTACGGACCGGCGCTCCGCTGGCCCAACGTGGTGTAGGGCGAATAACCGC	CACGCGGTTATCCGCCATTTCAGACGCCTCACGGCGAATAACGCCTGGGGCGTTATCCA
CCCTACGGACCGGCGCTCCGCTGGCCCAACCTGGTGTAGGGCGAATAACCGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134309.1\|VEE90179.1\|5274830_5276162_+\|membrane-protein	unknown	unknown	gnl\|CDD\|224635
LR134309.1\|VEE90210.1\|5290442_5291600_-\|phospholipase	unknown	unknown	gnl\|CDD\|224419
LR134309.1\|VEE90183.1\|5276586_5276943_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379230
LR134309.1\|VEE90201.1\|5285942_5287262_-\|manganese-transport-protein-MntH	unknown	unknown	gnl\|CDD\|234815
LR134309.1\|VEE90187.1\|5277520_5278327_+\|outer-membrane-assembly-lipoprotein-YfiO	unknown	unknown	gnl\|CDD\|274513
LR134309.1\|VEE90206.1\|5288351_5288963_-\|Protein-of-uncharacterised-function-(DUF2846)	unknown	unknown	gnl\|CDD\|378537
LR134309.1\|VEE90202.1\|5287334_5287643_-\|arylsulfate-sulfotransferase	unknown	unknown	gnl\|CDD\|226771
LR134309.1\|VEE90193.1\|5281160_5281934_-\|enoyl-CoA-hydratase/isomerase	unknown	unknown	gnl\|CDD\|235852
LR134309.1\|VEE90208.1\|5289056_5290343_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
LR134309.1\|VEE90197.1\|5282917_5284045_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
LR134309.1\|VEE90204.1\|5287663_5288245_-\|putative-amidase/protease	unknown	unknown	gnl\|CDD\|153243
LR134309.1\|VEE90191.1\|5279408_5280860_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
LR134309.1\|VEE90195.1\|5281998_5282925_-\|ferredoxin	unknown	unknown	gnl\|CDD\|235575
LR134309.1\|VEE90177.1\|5273826_5274834_+\|methanol-dehydrogenase-regulatory-protein	unknown	unknown	gnl\|CDD\|223786
LR134309.1\|VEE90189.1\|5278411_5279326_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|236871
LR134309.1\|VEE90199.1\|5284322_5285846_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|224862
LR134309.1\|VEE90173.1\|5270990_5272562_+\|membrane-protein	unknown	unknown	gnl\|CDD\|379261
LR134309.1\|VEE90185.1\|5277043_5277421_-\|putative-lipoprotein	unknown	unknown	unknown
LR134309.1\|VEE90175.1\|5272558_5273830_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379527
LR134309.1\|VEE90181.1\|5276166_5276526_-\|pilus-assembly-protein-PilZ	unknown	unknown	gnl\|CDD\|274060

Protein	Function_ID	Function_description	E-value
LR134309.1\|VEE90179.1\|5274830_5276162_+\|membrane-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.10209e-86
LR134309.1\|VEE90210.1\|5290442_5291600_-\|phospholipase	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	4.88176e-86
LR134309.1\|VEE90199.1\|5284322_5285846_+\|fumarate-hydratase	gnl\|CDD\|224862	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion].	1.05118e-147
LR134309.1\|VEE90181.1\|5276166_5276526_-\|pilus-assembly-protein-PilZ	gnl\|CDD\|274060	TIGR02266, gmx_TIGR02266, Myxococcus xanthus paralogous domain TIGR02266. This domain is related to Type IV pilus assembly protein PilZ (pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.	0.00176063
LR134309.1\|VEE90187.1\|5277520_5278327_+\|outer-membrane-assembly-lipoprotein-YfiO	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	1.96341e-05
LR134309.1\|VEE90206.1\|5288351_5288963_-\|Protein-of-uncharacterised-function-(DUF2846)	gnl\|CDD\|378537	pfam11008, DUF2846, Protein of unknown function (DUF2846). Some members in this family of proteins with unknown function are annotated as lipoproteins however this cannot be confirmed.	1.20717e-26
LR134309.1\|VEE90202.1\|5287334_5287643_-\|arylsulfate-sulfotransferase	gnl\|CDD\|226771	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only].	6.44728e-40
LR134309.1\|VEE90193.1\|5281160_5281934_-\|enoyl-CoA-hydratase/isomerase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	2.79206e-90
LR134309.1\|VEE90208.1\|5289056_5290343_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.3436e-33
LR134309.1\|VEE90197.1\|5282917_5284045_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.30352e-61
LR134309.1\|VEE90204.1\|5287663_5288245_-\|putative-amidase/protease	gnl\|CDD\|153243	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	5.24602e-111
LR134309.1\|VEE90191.1\|5279408_5280860_+\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
LR134309.1\|VEE90175.1\|5272558_5273830_+\|Uncharacterised-protein	gnl\|CDD\|379527	pfam14258, DUF4350, Domain of unknown function (DUF4350). This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length.	1.67666e-10
LR134309.1\|VEE90177.1\|5273826_5274834_+\|methanol-dehydrogenase-regulatory-protein	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.85211e-99
LR134309.1\|VEE90189.1\|5278411_5279326_+\|universal-stress-protein	gnl\|CDD\|236871	PRK11175, PRK11175, universal stress protein UspE; Provisional.	6.18568e-41
LR134309.1\|VEE90183.1\|5276586_5276943_-\|Uncharacterised-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	5.5104e-11
LR134309.1\|VEE90173.1\|5270990_5272562_+\|membrane-protein	gnl\|CDD\|379261	pfam13559, DUF4129, Domain of unknown function (DUF4129). This presumed domain is found at the C-terminus of proteins that contain a transglutaminase core domain. The function of this domain is unknown. The domain has a conserved TXXE motif.	0.00173262
LR134309.1\|VEE90201.1\|5285942_5287262_-\|manganese-transport-protein-MntH	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0
LR134309.1\|VEE90195.1\|5281998_5282925_-\|ferredoxin	gnl\|CDD\|235575	PRK05713, PRK05713, iron-sulfur-binding ferredoxin reductase.	0

>LR134309.1|VEE90191.1|5279408_5280860_+|pyruvate-kinase
MSVRRTKIVATLGPASNSPEVLEQLILAGIDVARLNFSHGTPDEHRARARLVRELAAKHGRFVALLGDLQGPKIRIAKFANKRIELQVGDKFRFSTSHARDAGTQEVVGIDYPDLVKDCGVGDELLLDDGRVVMVVEEVAADELRCRVLIGGPLSDHKGINRRGGGLTAPALTDKDKADIKLAADMDLDYVAVSFPRDAKDMEYARRLLTEAGGKAWLVAKIERAEAVADDDALDGLIRASDAVMVARGDLGVEIGDAELVGIQKKIILHARRNNKVVITATQMMESMIHSPMPTRAEVSDVANAVLDYTDAVMLSAESAAGEYPVEAVKAMARVCQGAEKHPTSQKSSHRLGQTFDRCDESIALASMYTANHFPGIKAIICLTESGFTPLIMSRIRSSVPIYAYSPHRETQARVAMFRGVETIPFDPAALPAEKVSQAAVDELLKRGVVTKGDWVILTKGDSYTAQGGTNTMKVLHVGDLLV
>LR134309.1|VEE90189.1|5278411_5279326_+|universal-stress-protein
MNLHNLLVVVDPSSDEQPALSRAQWIAERSGASVELLLCDFNPALDGGLFFDSHSLQRARDLYLDERVTWLEQLSMPLQQAGIRTQVEAQWGKPLDRMVLQRVGETRPDLVLKSTRKHNLLRRLLLGNSDWQLIRHCPQPLWLVHHDAWRGQRLCAALDPLHASDKPAALDHRLIAAARQLEASLGLRADYLHTHAAMPRSLLFDAEMLAGYERFVLQHEERHRQAFDDLLAAYPEIAAERRHLLAGYAEQAIPDFVRANDIDLLLMGAVARGHLDNALIGQTAERVLEEVECDLLVLKPTNDI
>LR134309.1|VEE90187.1|5277520_5278327_+|outer-membrane-assembly-lipoprotein-YfiO
MRFARRLVLLPLLSLLAACSPTTPLFVAQVTTGEVAEYKQMKSNRMTAAIEEEGDLLTYSAMAIRDNRSAEAEKLYLTGYDNSRYSAEVRGISLYQIGLIYMSRYNDQRDDAKATDYFQRVVREFPGTHAAEHAQARLLAMRQRAREPVQKSARELLATWKPQQNLDLYKTSLDPDMTLLSRRAVLKDRVDEAAELYLLAVNDPAIPAGIKEKALYQLGLMYLAPDNPHPNRDKAIEYLRRQLLDYPEGELSNKAGRHLDQALNVQPR
>LR134309.1|VEE90185.1|5277043_5277421_-|putative-lipoprotein
MRSLIVACLALSATGCNSWSLNSDLNGAYRAYDKGDCAQVMLDLSRAERRIRARPYLQPEISLLRGQCLERQSLFVDAAQTYHFIIARYPTSEYAYRAKARLETLRQLGRLSETPASASAVPTRL
>LR134309.1|VEE90183.1|5276586_5276943_-|Uncharacterised-protein
MRALWFCVALMPVLAQADIYRWTDAQGKVHFSATPPAGAQRVEVRPQVVERTAAAERAGQRQAALAEECGRLRQQLSQLERGGRFYRQDAGGGPVYLSDAELDAIRRELASRESERCR
>LR134309.1|VEE90181.1|5276166_5276526_-|pilus-assembly-protein-PilZ
MGLQRHIQRHQLPSYLKVFNRITDKPMGYIGNVSEDGLLLISQLPMLVGARFELRLKVPGLGGRPQCIDFSADCRWTCEDVTPGHFDSGFHLLAPPAEFLELVEALRRYFSFPRQPQSV
>LR134309.1|VEE90179.1|5274830_5276162_+|membrane-protein
MKPSRALLALFAALLLLAIGLGSLSALGQRLPAQLHTFWWAALAALLLLGLLDALWARRQAVPKLSRQLSGNLPLGRWSEVRLHLQHTYRRPVRLTLFDHLPAGMDFEYLPQEVELRPGESTEVGYRVRPLNRGHFVFPRCELELPSPLRLWRQRRYLEARGETRVYPDFARLYGAELMAVDHWLNQIGVRGGQRRGLGLEFHQLREFRDGDTLRQIDWKATARKRTPIAREYQDERDQQILFLLDCGRRMRSQDGDLSHFDHALNASLLLAYVALRQGDAVGAMTFAGDDRRHLPPGKGSAQLGALLNTVYDLQTSQRPADFPEAVQAVLSRQRRRALVILVTNLRDEDDEELLGAVKRLGRQHRVLVASLREEVLDTLRHEPVARYEQALAYTGTIDYLNARNGLHEKLAAHGVPVLDARPSELGPELISRYLGWKRAGVL
>LR134309.1|VEE90177.1|5273826_5274834_+|methanol-dehydrogenase-regulatory-protein
MSEQTPEQPSTAPNPALQRQRASQLAQALRTELQKALIGQGAVIDDVLTALLAGGHVLVEGVPGLGKTLLVRALARCFDGGFARIQFTPDLMPSDVTGHAVYDLASEQFKLRKGPVFTHLLLADEINRAPAKTQAALLEVMQERQVTLEGRALPVPQPFMVLATQNPIEQEGTYPLPEAELDRFMLKLRIDYPAEAEEQTLVRQVTRSARSDMLDVANLRPLLKDKDVLALQRIASDLPIDDQVLDYAVRLARTTRNWPGLALGAGPRASIALVRCGRARALLRGGEFVVPDDIKGCALAVLRHRVRLSPELDIEGLSVDQVLQQLLDQVPAPRV
>LR134309.1|VEE90175.1|5272558_5273830_+|Uncharacterised-protein
MMSRRARFLLLAVLLLLAGLLAIFLASRLQPYTETIDLGPSPEARRNPYLAAELFLRKQGVTVSRADGLEVLKELPPSGHTLLLLGSRSGMTPGQARRLLQWSEQGGHLVLIAERLWDEDEKKSGDLLLDSLDIRQYLTEDFDDSQDRASEETADADADEGSVDDHATEAPPEEAAGEEEEPADSVPDYSALTRLYLENERSPAYIGFDPDYHLYDPQNHAYAWANSGDATHLLQMQHGKGLVTVLTDAWIWQNRNIEQYDNAWLLWYLTQDNQVTLLYRAERDSLATLLARHFPEALAAALLLLLAGLWRAGLRQGPLQPVASRSRRQLEEHLRAGADFLLRQRGHVALLHGLQRDILRRARRRHPGFEQLGVAEQWQILGRMTRLPPSAISQAMRPYPAQRLSAADFTRQVAHLQSLRNAL
>LR134309.1|VEE90173.1|5270990_5272562_+|membrane-protein
MRLTDASVAIRPRSAWEALDLGILLAHRHARLLMGSWALLTLPLFAVLSLLLWQHPTLAILIFWWLKPAFERLPLYILSHALFGDTPTLRQALRAYPALLRKQLPASLLWRRFSPTRSFDLPVLQLEGLAGEPRSQRLIVLSQRNAGGATWLTVVGVHLEMALWAGFAMLLYLLIPAQNEIDWNWQSLLDPEAGEWLWLEHLSNLLYVLVLVVWEPIYVACGFTLYLNRRTELEAWDIELVFRRLRQRLVGSAYVLLLGLTASLAWLPAPSAYAEPAAATSAGEAELPPEQARLLRQKLNSEQAGKQIRAIVDGAPFKNSETVTGWRFGDKTEKKDSRKEDEERLKAFFEALANWVPFRHAAQVIEVLLWALLFSAVFLLVWRYREWLRLFVGNLGLPQRARREAPTVMFGLDLSPESLPDDIAGNAERLWNEKPREALGLLYRGLLSRLLHDYRLPLKGSHTEGEVLRLVEGLEQQRPLLHYSQLLTAQWQALAYGHRLPADDARQRLCDGWRSLFAAGAKP
>LR134309.1|VEE90193.1|5281160_5281934_-|enoyl-CoA-hydratase/isomerase
MSELIRVEREAGLLTLRLDRQDKKNALTRAMYSRMAEALLEAQADTAVRVVLITGGDACFTSGNDILDFLEQPPSLRDSPVGRFMSALLEFPKPVIAAVNGPAVGIGTTLLLHCDLVFVGRNARLKMPFVNLGLTPEFGSSLILPRMLGHARAAELLMLGQDFSGEQAAAWGLANAALEDGATVLEHARDAARRFLHLAPSAVVESKRLMKAPFIEELRRVIAEEGDIFSTRLRSPEAIEALSAFMHRRQPDFSRFA
>LR134309.1|VEE90195.1|5281998_5282925_-|ferredoxin
MPDIRVGERRLAVAAGSNLLDALLAGGIAVPHSCRAGSCHACLVHCLQGEVDDTLPEALDPARREAGWRLACQCRVLGDLVLQPFDPERDGLPARVVACHWLGDVLRLRLEPERPLRYRAGQHLLLWSDDGVARPYSLASLPHEDPWLEFHIDCSAPGAFCDRARRLAPGALLRLGELRGGALRYEPDWQERPLLLMAAGTGLAPLWGILREALRAEHQAPIQLLHLARDHYLASELAELAGRHPQVRVNLVSAAQLPSALADLRLVPRRSMALLCGQPASVERFARHLYLAGVPRSQTLADLFLPHA
>LR134309.1|VEE90197.1|5282917_5284045_-|diguanylate-cyclase
MRTDKPPLKQRALQKLLLRRFGMAAGTYLLGLVLLWLALLSGFYRAAPTTAAASTTLVVACQLAFLWLFASGRNLRYADPSLTEPQVLVAIAWLTYFLYHVDSLRGTFMVFYVLALLFGVFQLPPRVFARCAALAFIAFSGIYLVEALQQRLELPGRAALQVLVMFIVMVWLSLFASYIQAMRQRMRQRRYALQAHQDTLRGMMRQLEDLVATDELTGLFNRRHFMRMASRALEDLLPNRQHGLALIDLDHFKRINDRHGHAAGDRVLQTFAAVARSCLRDGDVLARYGGEEFVLLLPHADAEQLESCCERLRLAFQQAEPVGVTVDTLSLSVGMTLLYADDDLDEALQRADQALYRAKRGGRNRCDATWEVTSA
>LR134309.1|VEE90199.1|5284322_5285846_+|fumarate-hydratase
MAVIKQDDLIQSVADALQFISYYHPVDFIQAMHEAYLREESPAARDSMAQILINSRMCATGHRPICQDTGIVTVFVRVGMDVRWDGATMSVDDMINEGVRRAYNLPENVLRASILADPAGARKNTKDNTPAVIHYSIVPGDKVEVDVAAKGGGSENKSKMAMLNPSDSIVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAAVMAKEVLMDPIDIHELKARGPQNRIEELRLELFEKVNQLGIGAQGLGGLTTVLDVKIMDYPTHAASLPVCMIPNCAATRHAHFVLDGSGPAELEAPSLDAYPEIVWEAGPSARRVDLDKITPEEVQSWKPGETLLLNGKMLTGRDAAHKRMVDMLNKGETLPVDLKGRFIYYVGPVDPVGDEVVGPAGPTTATRMDKFTRQILEQTGLLGMIGKSERGPIAIEAIKDNKAVYLMAVGGAAYLVAQAIKKSKVLAFAELGMEAIYEFEVKDMPVTVAVDTNGESVHITGPAVWQKKIAESLAIEVK
>LR134309.1|VEE90201.1|5285942_5287262_-|manganese-transport-protein-MntH
MKYSLPTTATAPFCPSAVSHSVAVPADASPLRKLALFIGPGLLVSVGYMDPGNWATAIEAGSRFGYALLFVVVLASFSGMLLQSLCSRLGIATGRDLAQLSRERYRPGVARGQWLLAELSIVATDLAEVLGAALAFHLLLGVSITTGVVLTAFDTLIVLALQGANFRRLEAIVLGLIATIGACFFVELVLIGPYWPDVAAGLRPSWDTLSSQEPLYLAIGILGATVMPHNLYLHSSVVQTRVSGDDAASKRSAIRFSRLDTIGSLSLALLVNAAILILAAAAFHGSGHTEVVEIQDAYHLLDPLVGGALASFLFGFALLAAGQSSTFTGTIAGQVVMEGFLRAKIPCWQRRLITRGLALVPALIGVLWLGEAAVGKLLVLSQVVLSLQLPFALWPLIRFSSDRGLMGEFVNPRWVSALAWSLFGLISAANLTLLYFWFG
>LR134309.1|VEE90202.1|5287334_5287643_-|arylsulfate-sulfotransferase
MCELYVKADPILYESRSRSLRIRGVVTTLRLENQFWDILREIAEGEGLSTNQLITNLYEEVMDYRGEVLNFASFLRVSCTRYLAQRREKVAELSLVGQRAQA
>LR134309.1|VEE90204.1|5287663_5288245_-|putative-amidase/protease
MAAKKILMLVGDYAEDYETMVPFQALQMVGHQVHAVCPDKRAGQSVRTAIHDFEGDQTYSEKPGHNFTLNADFAQARAEDYDALLIPGGRAPEYLRLNEQVLALVRDFDAARKPIAAVCHGAQLLAAAGVLQGRACSAYPACAPEVRLAGGEYVDLPPDQAHVDGHLVTAPAWPAHPAWLARFLEALGTRISH
>LR134309.1|VEE90206.1|5288351_5288963_-|Protein-of-uncharacterised-function-(DUF2846)
MLRSLSLALSIVASLVGCSTPGAFFGAVDGPAFVAHPSADASHATVYLYRPRSQWADEELEAPGIFLNNELIGSLPSNGYLAFEFETGSYKLEMRRPLAGSFWTLFADGPMDFTRIASFMLEARAGSVYYLRYDELNPPPKSEHPAGEGDGPLQLVAADLGAAEIGATHQVQEPMQFAASGYRKRVQRSFWEGVGRALDKIGI
>LR134309.1|VEE90208.1|5289056_5290343_-|acyltransferase
MATPDSKERFIGLEWLRFLLGLYVVVYHTLHTYPKEQKFPGLDELTSLGFFATSTFFVLSGFLLAHVYARSGRLRESARSFWTKRLSNLYPLHLFSLLLSILVLLALSHLGIGPELDKATPRFVIYDTNEVLGRTHPELFLHWMSNTELFVNSILQILLLQAWNPYYLTFNAPLWSLSTLMFFYLAFPFVAPRLMRSRHKWKVLALVWLVYLIPPALVVASESYGIPWTGLLHRNPLLRLPEFLGGILAYGLFRGYRDRGMVPGRGLLAALVALVVAAFLVADYLFTQGAKHWYFLLHNGLLLPAQLLLVCLCALPADPKSAFVRHWSPRLGAASLSLFALHVPMFTLFSRSERLIAVPGRCLDDWRACTEAAAALPSSLLYYPLFLVLLVAFCVLFQERGVVPVRKWLVRRLMPAPAPALAKVPRPA
>LR134309.1|VEE90210.1|5290442_5291600_-|phospholipase
MSGPVFPWRSDNRFALLNDGVRFFPRMLLAIEAAQRSIELELYLVEDGHCAELFLVALLDARRRGVAVRCLFDGFGCLGLGSAWIQRLREAGGELRLYNPLRWKLTGGNLYRDHRKLLLVDGRLGYVGGAGITDEFWEPVSDVSAWREVMVEMDGPVVADWAALFERQWLACLEEKAWKPREGMTLTRLPPQPGAARGLGRVAYADARQHRDILQSLVRALNGSRRRIWLATPYFLPTWKVRRALRKAAQRGVEVRLLLAGRLTDHAPVRYAGQRYYPRLLRAGVRIHEYQPRFLHLKMVMVDDWVSVGSCNFDHWNLRFNLDANLEALDPDFTNEAAASLLADFADSREVTLAMWRARPLWMRLHQRLWGWLDRVVVNFLDRRR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134309_2	2.1\|1850132\|52\|LR134309\|CRISPRCasFinder	1850132-1850183	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0

1. spacer 2.1|1850132|52|LR134309|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

645168 : 698883

uncultured_Caudovirales_phage(26.92%)

plate,holin,tRNA,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE85278.1\|645168_645618_-\|tRNA	aspartyl-tRNA amidotransferase subunit B	A0A292GL36	Xanthomonas_phage	1.1e-17	38.1
VEE85279.1\|645687_645903_-	30S ribosomal protein S21	NA	NA	NA	NA
VEE85280.1\|646103_647129_+	UGMP family protein	A0A0R6PI74	Moraxella_phage	8.3e-109	58.1
VEE85281.1\|647207_647777_-	glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA
VEE85282.1\|647797_648214_+	dihydroneopterin aldolase	NA	NA	NA	NA
VEE85283.1\|648204_648747_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA
VEE85284.1\|648719_649952_-\|tRNA	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	A0A076G5T8	Escherichia_phage	2.6e-77	43.1
VEE85285.1\|649995_650502_-	Uncharacterised protein	NA	NA	NA	NA
VEE85286.1\|650595_652149_-	SpoVR family protein	NA	NA	NA	NA
VEE85287.1\|652145_653417_-	Uncharacterized conserved protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
VEE85288.1\|653517_655440_-	PrkA family serine protein kinase	NA	NA	NA	NA
VEE85289.1\|655718_656051_-	thiosulfate sulfurtransferase	NA	NA	NA	NA
VEE85290.1\|656094_656946_-	diadenosine tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
VEE85291.1\|656945_657326_-	CO2+/MG2+ efflux protein ApaG	NA	NA	NA	NA
VEE85292.1\|657362_658169_-	16S ribosomal RNA methyltransferase KsgA/Dim1 family protein	NA	NA	NA	NA
VEE85293.1\|658284_659271_-	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA
VEE85294.1\|659267_660560_-	peptidyl-prolyl cis-trans isomerase SurA	NA	NA	NA	NA
VEE85295.1\|660540_663330_-	organic solvent tolerance protein	NA	NA	NA	NA
VEE85296.1\|663456_664473_+	phosphotransferase	NA	NA	NA	NA
VEE85297.1\|664469_665144_+	nucleotidyl transferase	NA	NA	NA	NA
VEE85298.1\|665145_665904_+	molecuar chaperone DnaJ	NA	NA	NA	NA
VEE85299.1\|665904_666966_-	hydrolase	NA	NA	NA	NA
VEE85300.1\|667117_669511_+	sensory box histidine kinase	NA	NA	NA	NA
VEE85301.1\|669556_670189_+	putative two-component response regulator	NA	NA	NA	NA
VEE85302.1\|670317_671352_+	putative binding protein component of ABC transporter	NA	NA	NA	NA
VEE85303.1\|671585_672695_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
VEE85304.1\|672750_673797_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
VEE85305.1\|673911_675159_+	ABC transporter permease	NA	NA	NA	NA
VEE85306.1\|675264_676095_+	ABC transporter permease	NA	NA	NA	NA
VEE85307.1\|676218_676893_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
VEE85308.1\|676892_677711_+	phosphoglycolate phosphatase	NA	NA	NA	NA
VEE85309.1\|677783_679262_+	anthranilate synthase component I	NA	NA	NA	NA
VEE85310.1\|679579_679894_-	transcriptional regulator PrtN	NA	NA	NA	NA
VEE85311.1\|679993_680764_-	transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
VEE85312.1\|680848_681019_-	Uncharacterised protein	NA	NA	NA	NA
VEE85313.1\|681221_681422_+	repressor, PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
VEE85314.1\|681469_681829_+	Uncharacterised protein	NA	NA	NA	NA
VEE85315.1\|682287_682641_+\|holin	putative holin	B5TK61	Pseudomonas_phage	3.0e-26	53.3
VEE85316.1\|682662_683178_+	phage protein	A0A2H4J881	uncultured_Caudovirales_phage	1.8e-32	43.4
VEE85317.1\|683174_683732_+\|plate	putative baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	1.3e-44	70.3
VEE85318.1\|683884_684211_+	putative bacteriophage protein	A0A2H4JA09	uncultured_Caudovirales_phage	3.2e-30	60.2
VEE85319.1\|684207_685095_+\|plate	putative phage baseplate assembly protein	S4TNY7	Salmonella_phage	4.1e-88	59.8
VEE85320.1\|685087_685621_+	putative bacteriophage protein	Q9ZXK7	Pseudomonas_virus	3.9e-62	64.6
VEE85321.1\|685622_687728_+	putative bacteriophage protein	Q9ZXK6	Pseudomonas_virus	3.0e-222	52.7
VEE85322.1\|687735_688176_+\|tail	tail fiber assembly protein	NA	NA	NA	NA
VEE85323.1\|688218_689379_+\|tail	phage tail sheath protein	Q38068	Phage_PS17	1.2e-188	83.4
VEE85324.1\|689391_689895_+\|tail	putative phage tail tube protein	Q7M2A5	Pseudomonas_phage	1.8e-64	72.8
VEE85325.1\|689909_690254_+	Uncharacterised protein	NA	NA	NA	NA
VEE85326.1\|690423_692661_+\|tail	putative tail length determinator protein	NA	NA	NA	NA
VEE85327.1\|692670_693543_+\|tail	putative tail formation protein	A0A2H4J875	uncultured_Caudovirales_phage	2.5e-74	51.4
VEE85328.1\|693517_693724_+	putative phage protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
VEE85329.1\|693781_694771_+	phage late control gene D protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.5e-107	55.8
VEE85330.1\|694803_695433_+	lytic enzyme	A0A125RNP1	Pseudomonas_phage	1.6e-86	78.0
VEE85331.1\|695429_695792_+	Uncharacterised protein	H2BDA0	Pseudomonas_phage	4.2e-15	47.9
VEE85332.1\|695788_696046_+	lipoprotein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
VEE85333.1\|696393_696999_+	anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	66.3
VEE85334.1\|697000_698050_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
VEE85335.1\|698046_698883_+	indole-3-glycerol-phosphate synthase	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9

DBSCAN-SWA_2

796817 : 840204

Pseudomonas_phage(94.23%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE85423.1\|796817_797186_-	Uncharacterized conserved protein	J9SGX4	Pseudomonas_phage	1.1e-63	100.0
VEE85424.1\|797182_797731_-	Uncharacterised protein	J9RWB3	Pseudomonas_phage	2.1e-98	100.0
VEE85425.1\|797730_798297_-	bacteriophage protein	J9SVT5	Pseudomonas_phage	2.1e-101	99.5
VEE85426.1\|798283_798751_-	Uncharacterised protein	J9STM8	Pseudomonas_phage	8.5e-77	100.0
VEE85427.1\|798750_798942_-	Uncharacterised protein	J9RW45	Pseudomonas_phage	5.0e-28	100.0
VEE85428.1\|798943_799633_-	Protein of uncharacterised function (DUF2786)	Q5ZR11	Pseudomonas_phage	4.2e-125	98.7
VEE85429.1\|799634_800258_-	Protein of uncharacterised function (DUF3164)	Q5ZR10	Pseudomonas_phage	1.3e-109	99.5
VEE85430.1\|800250_800451_-	bacteriophage protein	J9SVU3	Pseudomonas_phage	6.7e-31	97.0
VEE85431.1\|800443_800977_-	Uncharacterised protein	J9STN6	Pseudomonas_phage	3.3e-93	98.9
VEE85432.1\|800966_801647_-	Uncharacterised protein	J9SNC1	Pseudomonas_phage	2.4e-128	98.7
VEE85433.1\|801646_801931_-	Uncharacterised protein	J9SGZ7	Pseudomonas_phage	3.4e-44	100.0
VEE85434.1\|801927_802269_-	bacteriophage protein	J9RWC3	Pseudomonas_phage	3.5e-56	99.1
VEE85435.1\|802270_803437_-	general secretion pathway protein A	J9SVV1	Pseudomonas_phage	1.0e-216	100.0
VEE85436.1\|803436_805221_-	Integrase core domain	J9SGQ3	Pseudomonas_phage	0.0e+00	98.5
VEE85437.1\|805224_806199_-	Uncharacterised protein	J9RW58	Pseudomonas_phage	8.9e-153	97.8
VEE85438.1\|806208_806523_-	Uncharacterised protein	J9SUN0	Pseudomonas_phage	2.9e-49	98.1
VEE85439.1\|806519_806780_-	Uncharacterised protein	J9RWD0	Pseudomonas_phage	1.5e-38	95.3
VEE85440.1\|806772_807261_-	Uncharacterised protein	J9SNL8	Pseudomonas_phage	2.8e-91	99.4
VEE85441.1\|807893_808124_-	bacteriophage protein	J9RW65	Pseudomonas_phage	2.5e-37	100.0
VEE85442.1\|808585_809089_+	Uncharacterised protein	J9RWD8	Pseudomonas_phage	4.0e-80	92.8
VEE85443.1\|809240_809537_+\|holin	holin	A0A0S4L5C0	Pseudomonas_phage	2.9e-46	100.0
VEE85444.1\|809539_809698_+	Uncharacterised protein	J9SNF4	Pseudomonas_phage	3.4e-22	100.0
VEE85445.1\|809694_810324_+	transglycosylase	J9SH25	Pseudomonas_phage	1.9e-119	98.6
VEE85446.1\|810525_811149_+	Uncharacterised protein	J9SVX5	Pseudomonas_phage	3.6e-99	90.3
VEE85447.1\|811148_811469_+	bacteriophage protein	J9STR5	Pseudomonas_phage	5.1e-49	100.0
VEE85448.1\|811465_811768_+	bacteriophage protein	J9SNG3	Pseudomonas_phage	4.1e-48	99.0
VEE85449.1\|811770_812319_+	bacteriophage protein	J9SH37	Pseudomonas_phage	6.4e-76	98.9
VEE85450.1\|812320_813994_+	Mu-like prophage gp28 protein	J9RWF2	Pseudomonas_phage	0.0e+00	99.5
VEE85451.1\|813987_815562_+	bacteriophage protein	J9SVY0	Pseudomonas_phage	3.8e-286	96.0
VEE85452.1\|815551_816790_+	bacteriophage protein	J9STS2	Pseudomonas_phage	5.8e-242	99.5
VEE85453.1\|816791_817367_+	bacteriophage protein	J9SNH3	Pseudomonas_phage	2.9e-103	99.0
VEE85454.1\|817577_818687_+	bacteriophage protein	J9SH47	Pseudomonas_phage	2.9e-200	99.2
VEE85455.1\|818692_819097_+	bacteriophage protein	J9RWG0	Pseudomonas_phage	1.8e-67	100.0
VEE85456.1\|819111_820008_+	bacteriophage protein	J9SVY7	Pseudomonas_phage	1.3e-171	100.0
VEE85457.1\|820457_820973_+	bacteriophage protein	J9SNI4	Pseudomonas_phage	3.5e-92	100.0
VEE85458.1\|820969_821422_+	bacteriophage protein	J9SH57	Pseudomonas_phage	2.1e-80	99.3
VEE85459.1\|821418_821622_+	bacteriophage protein	J9RWG5	Pseudomonas_phage	1.7e-29	100.0
VEE85460.1\|821628_822369_+	bacteriophage protein	J9SVZ4	Pseudomonas_phage	1.8e-134	98.8
VEE85461.1\|822371_822854_+	bacteriophage protein	J9STT8	Pseudomonas_phage	2.8e-83	99.4
VEE85462.1\|823152_826749_+\|tail	tail length tape measure protein	J9SH65	Pseudomonas_phage	0.0e+00	92.1
VEE85463.1\|826748_827705_+	Uncharacterised protein	J9RWP3	Pseudomonas_phage	3.1e-182	95.0
VEE85464.1\|827707_828631_+	Uncharacterised protein	A0A0S4L5N6	Pseudomonas_phage	3.3e-181	98.7
VEE85465.1\|828633_830340_+	Uncharacterised protein	J9STL4	Pseudomonas_phage	0.0e+00	97.5
VEE85466.1\|830326_831145_+	Uncharacterized conserved protein	J9SN93	Pseudomonas_phage	3.8e-165	99.3
VEE85467.1\|831154_831385_+	Uncharacterised protein	Q5ZQW1	Pseudomonas_phage	1.2e-36	100.0
VEE85468.1\|831598_833809_+	bacteriophage protein	Q5ZQV9	Pseudomonas_phage	0.0e+00	97.8
VEE85469.1\|833805_834954_+	Protein of uncharacterised function (DUF2793)	J9SP76	Pseudomonas_phage	9.0e-213	92.9
VEE85470.1\|834950_835241_+	Uncharacterised protein	A0A0A7DJU8	Pseudomonas_phage	2.6e-44	95.7
VEE85471.1\|835540_836335_+	Prophage PSPPH02, adenine modification methytransferase	Q5ZQW7	Pseudomonas_phage	1.8e-143	90.2
VEE85472.1\|836453_837260_+	aminoglycoside 3-N-acetyltransferase	Q75ZG1	Hepacivirus	1.9e-71	53.5
VEE85473.1\|837370_837940_-	periplasmic protein-like protein	A0A2L0V127	Agrobacterium_phage	1.0e-07	28.6
VEE85474.1\|838017_840204_-	putative bacteriophytochrome	B5LWN8	Feldmannia_species_virus	4.3e-22	23.0

DBSCAN-SWA_3

1333865 : 1379954

Pseudomonas_phage(91.23%)

integrase,tail,portal,protease

attL 1334663:1334681|attR 1385871:1385889

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE85927.1\|1333865_1335071_-	pyridoxal-phosphate dependent protein	Q2XUY6	environmental_halophage	3.0e-73	39.2
1334663:1334681	attL	NA	NA	NA	NA
VEE85928.1\|1335165_1336200_-	2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase	NA	NA	NA	NA
VEE85929.1\|1336229_1336853_-	amino acid transporter LysE	NA	NA	NA	NA
VEE85930.1\|1336865_1337213_-	arsenate reductase glutaredoxin family protein	NA	NA	NA	NA
VEE85931.1\|1337279_1338383_-\|integrase	phage integrase	A0A0U4JIT5	Pseudomonas_phage	6.0e-206	100.0
VEE85932.1\|1338825_1339020_-	Uncharacterised protein	A0A0U4JVQ0	Pseudomonas_phage	3.9e-28	98.4
VEE85933.1\|1339187_1339508_-	restriction alleviation protein, Lar family	A0A0A1IUI9	Pseudomonas_phage	7.4e-16	93.5
VEE85934.1\|1339500_1339701_-	Uncharacterised protein	A0A0S2SY76	Pseudomonas_phage	2.9e-34	100.0
VEE85935.1\|1339690_1340353_-	Uncharacterised protein	Q9MC60	Pseudomonas_phage	4.9e-46	51.8
VEE85936.1\|1340345_1340627_-	Uncharacterised protein	A0A125RNQ7	Pseudomonas_phage	3.6e-46	100.0
VEE85937.1\|1340626_1341343_-	Uncharacterised protein	Q9MC58	Pseudomonas_phage	4.2e-35	69.2
VEE85938.1\|1341335_1341719_-	Uncharacterised protein	NA	NA	NA	NA
VEE85939.1\|1341730_1343149_-	Uncharacterised protein	A0A2H5BQE8	Pseudomonas_phage	4.7e-46	35.0
VEE85940.1\|1343145_1343355_-	Uncharacterised protein	H2BDF2	Pseudomonas_virus	3.6e-27	84.1
VEE85941.1\|1343318_1343567_-	Uncharacterised protein	A0A0U4J8Y4	Pseudomonas_phage	3.2e-35	91.5
VEE85942.1\|1343579_1344341_-	methyltransferase	W0LM09	Edwardsiella_phage	1.3e-63	63.6
VEE85943.1\|1344423_1345041_-	Uncharacterised protein	H2BDG4	Pseudomonas_virus	5.6e-36	42.7
VEE85944.1\|1345070_1345607_-	Uncharacterised protein	A0A1B0YZW9	Pseudomonas_phage	1.1e-96	97.2
VEE85945.1\|1345603_1345981_-	Uncharacterised protein	NA	NA	NA	NA
VEE85946.1\|1346045_1346348_-	Uncharacterised protein	A0A0U4ISH7	Pseudomonas_phage	4.1e-40	97.0
VEE85947.1\|1346347_1346662_-	Uncharacterised protein	A0A0U4KL54	Pseudomonas_phage	1.0e-41	85.6
VEE85948.1\|1347096_1347345_-	Uncharacterised protein	A0A1B0YZY1	Pseudomonas_phage	2.7e-34	90.2
VEE85949.1\|1347355_1347739_-	LuxR family transcriptional regulator	A0A0U4IIG4	Pseudomonas_phage	2.0e-60	93.7
VEE85950.1\|1348049_1348916_-	ParB/RepB/Spo0J family partition protein	A0A0U4JP11	Pseudomonas_phage	2.4e-157	99.0
VEE85951.1\|1349181_1349403_-	Uncharacterised protein	NA	NA	NA	NA
VEE85952.1\|1349607_1349886_-	Uncharacterised protein	NA	NA	NA	NA
VEE85953.1\|1349945_1350113_-	Uncharacterised protein	NA	NA	NA	NA
VEE85954.1\|1350627_1350834_-	Uncharacterised protein	A0A0U4IJ22	Pseudomonas_phage	3.9e-34	97.1
VEE85955.1\|1350844_1351051_-	Uncharacterised protein	A0A0U4IBH8	Pseudomonas_phage	2.0e-30	97.1
VEE85956.1\|1351406_1352168_-	repressor protein cI	A0A2H4J6J6	uncultured_Caudovirales_phage	3.6e-40	59.0
VEE85957.1\|1352645_1353359_+	phage antirepressor	A0A1B0YZY9	Pseudomonas_phage	1.5e-77	67.2
VEE85958.1\|1353438_1354185_+	phage replication protein	A0A1B0YZZ0	Pseudomonas_phage	3.3e-67	82.3
VEE85959.1\|1354181_1354865_+	Replication protein P	A0A1B0YZY6	Pseudomonas_phage	2.3e-123	98.2
VEE85960.1\|1354861_1355068_+	Uncharacterised protein	A0A1B0YZY8	Pseudomonas_phage	3.1e-31	94.1
VEE85961.1\|1355064_1355646_+	ninG protein	A0A0U4KL68	Pseudomonas_phage	1.5e-102	94.8
VEE85962.1\|1355642_1355939_+	Uncharacterised protein	A0A1B0YZZ2	Pseudomonas_phage	8.1e-41	83.7
VEE85963.1\|1355940_1356315_+	antitermination protein Q	NA	NA	NA	NA
VEE85964.1\|1356584_1356917_+	Holin, phage lambda	A0A1B0YZZ1	Pseudomonas_phage	1.1e-43	95.5
VEE85965.1\|1356913_1357531_+	Predicted chitinase; lytic protein	A0A0U4JP23	Pseudomonas_phage	8.0e-107	92.6
VEE85966.1\|1357530_1357770_+	Uncharacterised protein	A0A0H5AWC3	Pseudomonas_phage	8.3e-20	51.9
VEE85967.1\|1357983_1358181_+	Uncharacterised protein	A0A1W6JTG8	Pseudomonas_phage	2.5e-22	96.6
VEE85968.1\|1358233_1358977_+	Uncharacterised protein	A0A1B0Z000	Pseudomonas_phage	1.4e-134	99.2
VEE85969.1\|1359096_1359642_+	DNA packaging dimer Putative small subunit	A0A0A0YWC3	Pseudomonas_phage	3.1e-94	100.0
VEE85970.1\|1359613_1361593_+	DNA packaging dimer large subunit	A0A1W6JT68	Pseudomonas_phage	0.0e+00	99.2
VEE85971.1\|1361583_1361799_+	Uncharacterised protein	A0A1B0YZU1	Pseudomonas_phage	8.5e-32	100.0
VEE85972.1\|1361798_1363445_+\|portal	Putative portal protein	A0A0A0YUB7	Pseudomonas_phage	0.0e+00	99.6
VEE85973.1\|1363416_1365498_+\|protease	Putative Clp protease	A0A1W6JT88	Pseudomonas_phage	0.0e+00	99.1
VEE85974.1\|1365564_1365882_+	Uncharacterized conserved protein	A0A1W6JT93	Pseudomonas_phage	4.6e-50	100.0
VEE85975.1\|1365878_1366208_+	Uncharacterised protein	A0A1B0YZU3	Pseudomonas_phage	6.8e-57	99.1
VEE85976.1\|1366204_1366675_+	Uncharacterised protein	A0A1W6JT75	Pseudomonas_phage	5.9e-86	98.7
VEE85977.1\|1366678_1366873_+	Uncharacterised protein	A0A1W6JT79	Pseudomonas_phage	2.2e-26	95.3
VEE85978.1\|1366874_1367627_+	Uncharacterised protein	A0A1B0YZT8	Pseudomonas_phage	9.9e-136	98.4
VEE85979.1\|1368893_1369196_+	Uncharacterised protein	A0A1B0YZV7	Pseudomonas_phage	7.0e-48	99.0
VEE85980.1\|1369298_1371782_+\|tail	Putative tail length tape measure protein	A0A1B0YZV6	Pseudomonas_phage	0.0e+00	98.8
VEE85981.1\|1371822_1372344_+	Uncharacterised protein	A0A1W6JT98	Pseudomonas_phage	3.7e-97	98.3
VEE85982.1\|1372343_1374041_+	Uncharacterised protein	A0A1W6JTA3	Pseudomonas_phage	3.1e-310	95.4
VEE85983.1\|1374043_1374454_+	Uncharacterised protein	A0A1B0YZV0	Pseudomonas_phage	5.4e-59	88.9
VEE85984.1\|1375010_1375433_+	Uncharacterised protein	A0A1W6JT91	Pseudomonas_phage	7.7e-69	96.4
VEE85985.1\|1375419_1376919_+	Uncharacterised protein	A0A1W6JT90	Pseudomonas_phage	1.1e-223	82.1
VEE85986.1\|1376941_1377529_+	Uncharacterised protein	A0A0U4B0K9	Pseudomonas_phage	1.3e-103	96.4
VEE85987.1\|1377521_1377713_+	Uncharacterised protein	A0A1B0Z2L3	Pseudomonas_phage	7.0e-30	100.0
VEE85988.1\|1377717_1378278_+	Uncharacterised protein	A0A0U4JIY3	Pseudomonas_phage	2.7e-98	98.4
VEE85989.1\|1378277_1378559_+	Uncharacterised protein	A0A1W6JTD4	Pseudomonas_phage	7.9e-46	98.9
VEE85990.1\|1379114_1379417_+	Uncharacterised protein	A0A0S2SY61	Pseudomonas_phage	1.1e-42	87.0
VEE85991.1\|1379413_1379653_+	Uncharacterised protein	A0A1B0YZV9	Pseudomonas_phage	3.5e-34	92.4
VEE85992.1\|1379681_1379954_+	bacteriophage protein	A0A0U4JEI3	Pseudomonas_phage	4.5e-46	97.8
1385871:1385889	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1423229 : 1432291

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE86032.1\|1423229_1423898_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.0e-43	53.1
VEE86033.1\|1423943_1424837_+	putative lipoprotein NlpD	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
VEE86034.1\|1424941_1425946_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
VEE86035.1\|1426372_1426696_-	ferredoxin I	NA	NA	NA	NA
VEE86036.1\|1426762_1429330_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
VEE86037.1\|1429455_1430463_-	putative TolB-like translocation protein	NA	NA	NA	NA
VEE86038.1\|1430610_1431117_+	competence-damaged protein	B5TK85	Pseudomonas_phage	1.8e-56	76.0
VEE86039.1\|1431250_1432291_+	recombinase A	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_5

2501675 : 2560409

Pseudomonas_phage(70.97%)

integrase,terminase,tRNA

attL 2497183:2497199|attR 2549794:2549810

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2497183:2497199	attL	NA	NA	NA	NA
VEE87039.1\|2501675_2502956_+\|tRNA	seryl-tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.8e-97	45.2
VEE87040.1\|2502957_2504355_+	siroheme synthase	NA	NA	NA	NA
VEE87041.1\|2504359_2505334_-	glutathione S-transferase domain-containing protein	NA	NA	NA	NA
VEE87042.1\|2505421_2506405_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
VEE87043.1\|2506401_2506737_-	putative desulfoviridin gamma subunit	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
VEE87044.1\|2506733_2507039_-	DsrH family protein	NA	NA	NA	NA
VEE87045.1\|2507038_2507398_-	sulfur relay protein TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.1e-34	61.7
VEE87046.1\|2507394_2507790_-	sulfur transfer complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.5e-47	71.3
VEE87047.1\|2507900_2508569_-	24K membrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
VEE87048.1\|2508904_2509894_-\|integrase	site-specific recombinase, phage integrase family	A0A2H4JDJ8	uncultured_Caudovirales_phage	8.5e-127	69.2
VEE87049.1\|2509973_2510210_-	Uncharacterised protein	A0A2H4JF29	uncultured_Caudovirales_phage	3.8e-17	53.2
VEE87050.1\|2510288_2512652_-	Uncharacterised protein	A0A0U1UNM2	Pseudomonas_phage	2.1e-147	45.1
VEE87051.1\|2512749_2513256_-	Uncharacterised protein	L7TI83	Pseudomonas_virus	1.3e-86	95.8
VEE87052.1\|2513252_2513654_-	Uncharacterised protein	NA	NA	NA	NA
VEE87053.1\|2513661_2514423_-	Uncharacterised protein	Q5QF32	Pseudomonas_virus	7.4e-147	98.0
VEE87054.1\|2514419_2514908_-	Uncharacterized protein conserved in bacteria	A0A0U1W068	Pseudomonas_phage	1.7e-91	95.1
VEE87055.1\|2514904_2515582_-	Uncharacterised protein	A0A0U1SZL2	Pseudomonas_phage	1.8e-64	59.0
VEE87056.1\|2515578_2516022_-	Uncharacterised protein	A0A2K8HVL6	Pseudomonas_phage	4.0e-60	81.0
VEE87057.1\|2516018_2517797_-	C-5 cytosine-specific DNA methylase	Q9ZXI4	Pseudomonas_virus	1.8e-300	97.8
VEE87058.1\|2517793_2520424_-	DNA methylase domain protein	J7I4L6	Pseudomonas_phage	0.0e+00	98.1
VEE87059.1\|2520570_2522313_-	SMC domain-containing protein	J7HXJ7	Pseudomonas_phage	2.0e-251	82.0
VEE87060.1\|2522316_2523084_-	putative DNA segregation ATPase FtsK/SpoIIIE	J7I0T4	Pseudomonas_phage	6.0e-120	77.1
VEE87061.1\|2523094_2523295_-	Uncharacterised protein	J7I437	Pseudomonas_phage	1.9e-30	100.0
VEE87062.1\|2523301_2524201_-	recombination and repair protein	Q858E1	Salmonella_phage	3.2e-104	73.6
VEE87063.1\|2524213_2525122_-	endonuclease	Q858E0	Salmonella_phage	2.9e-121	71.5
VEE87064.1\|2525096_2525594_-	Uncharacterised protein	NA	NA	NA	NA
VEE87065.1\|2525604_2525814_-	Uncharacterised protein	NA	NA	NA	NA
VEE87066.1\|2525810_2526032_-	Uncharacterised protein	H2BD53	Pseudomonas_phage	1.2e-33	100.0
VEE87067.1\|2526015_2526168_-	Uncharacterised protein	A0A2K8HR67	Pseudomonas_phage	9.0e-12	96.8
VEE87068.1\|2526576_2526825_-	Uncharacterised protein	NA	NA	NA	NA
VEE87069.1\|2526838_2527207_-	regulatory protein	J7I430	Pseudomonas_phage	4.6e-62	99.2
VEE87070.1\|2527241_2527454_-	regulatory protein	L7TKR9	Pseudomonas_virus	5.8e-33	97.1
VEE87071.1\|2527516_2527738_-	Uncharacterised protein	NA	NA	NA	NA
VEE87072.1\|2527942_2528221_-	Uncharacterised protein	NA	NA	NA	NA
VEE87073.1\|2528280_2528448_-	Uncharacterised protein	NA	NA	NA	NA
VEE87074.1\|2528962_2529169_-	Uncharacterised protein	A0A0U4IJ22	Pseudomonas_phage	3.9e-34	97.1
VEE87075.1\|2529179_2529386_-	Uncharacterised protein	A0A0U4B0I0	Pseudomonas_phage	2.2e-29	94.1
VEE87076.1\|2530382_2531048_-	cI repressor protein	H2BDH4	Pseudomonas_virus	1.1e-45	42.4
VEE87077.1\|2531394_2531880_-	Uncharacterised protein	NA	NA	NA	NA
VEE87078.1\|2531917_2532100_+	Uncharacterised protein	A0A127KNC5	Pseudomonas_phage	4.5e-26	100.0
VEE87079.1\|2532092_2532893_+	Uncharacterised protein	J7I419	Pseudomonas_phage	7.8e-147	98.5
VEE87080.1\|2532885_2534301_+	replicative DNA helicase	H2BD70	Pseudomonas_phage	4.4e-262	99.2
VEE87081.1\|2534293_2534737_+	endodeoxyribonuclease RusA	H2BD71	Pseudomonas_phage	2.8e-53	69.9
VEE87082.1\|2534765_2535635_+	Uncharacterised protein	J7HXH6	Pseudomonas_phage	4.2e-162	96.5
VEE87083.1\|2535749_2536139_+	Uncharacterised protein	J7I0R6	Pseudomonas_phage	1.3e-62	100.0
VEE87084.1\|2536131_2536416_+	Protein of uncharacterised function (DUF754)	H2BD74	Pseudomonas_phage	5.9e-41	97.9
VEE87085.1\|2536424_2536967_+\|terminase	terminase small subunit	H2BD75	Pseudomonas_phage	5.0e-97	98.3
VEE87086.1\|2536950_2538204_+\|terminase	phage terminase, large subunit, PBSX family	J7I4J3	Pseudomonas_phage	4.5e-250	100.0
VEE87087.1\|2538203_2538401_+	aldehyde dehydrogenase	H2BD77	Pseudomonas_phage	5.2e-28	98.5
VEE87088.1\|2538403_2539723_+	glycoprotein	J7I414	Pseudomonas_phage	2.5e-259	99.5
VEE87089.1\|2539736_2540660_+	phage Mu protein F like protein	H2BD79	Pseudomonas_phage	2.2e-169	99.0
VEE87090.1\|2540663_2541941_+	glycoprotein	A0A125RNM1	Pseudomonas_phage	8.2e-215	99.3
VEE87091.1\|2541944_2542394_+	glycoprotein	H2BD81	Pseudomonas_phage	4.8e-77	98.0
VEE87092.1\|2542409_2543504_+	glycoprotein	J7I0Q9	Pseudomonas_phage	4.6e-206	97.8
VEE87093.1\|2543514_2543973_+	Uncharacterised protein	A0A125RNM4	Pseudomonas_phage	5.1e-50	75.0
VEE87094.1\|2544284_2544686_+	glycoprotein	J7HX89	Pseudomonas_phage	5.0e-70	97.0
VEE87095.1\|2544682_2545003_+	glycoprotein	J7I4I8	Pseudomonas_phage	1.6e-55	95.3
VEE87096.1\|2545004_2545409_+	Uncharacterised protein	H2BD87	Pseudomonas_phage	8.1e-68	99.3
VEE87097.1\|2545405_2545780_+	Uncharacterised protein	J7I407	Pseudomonas_phage	2.9e-67	98.4
VEE87098.1\|2545794_2546790_+	glycoprotein	H2BD89	Pseudomonas_phage	3.6e-165	94.3
VEE87099.1\|2546786_2547404_+	glycoprotein	A0A125RNN1	Pseudomonas_phage	2.6e-113	99.5
VEE87100.1\|2549299_2550415_+	glycoprotein	H2BD91	Pseudomonas_phage	5.4e-162	98.4
2549794:2549810	attR	NA	NA	NA	NA
VEE87101.1\|2550411_2550879_+	membrane protein	H2BD92	Pseudomonas_phage	1.4e-92	99.4
VEE87102.1\|2550862_2551354_+	ArsR family transcriptional regulator	H2BDC5	Pseudomonas_virus	1.0e-88	98.2
VEE87103.1\|2551358_2551766_+	Uncharacterised protein	J7HX80	Pseudomonas_phage	1.4e-72	97.0
VEE87104.1\|2551737_2554467_+	Uncharacterised protein	A0A127KNI3	Pseudomonas_phage	0.0e+00	98.0
VEE87105.1\|2554527_2556207_+	structural protein	A0A2H5BQA0	Pseudomonas_phage	1.9e-211	84.8
VEE87106.1\|2556219_2558295_+	acetyltransferase	B5WZU0	Pseudomonas_phage	2.9e-60	35.2
VEE87107.1\|2558339_2558969_+	lytic enzyme	A0A125RNP1	Pseudomonas_phage	1.9e-111	96.2
VEE87108.1\|2558965_2559334_+	Uncharacterised protein	H2BDD6	Pseudomonas_virus	6.5e-48	87.7
VEE87109.1\|2559330_2559594_+	lipoprotein	A0A0U4B0B7	Pseudomonas_phage	1.5e-35	93.0
VEE87110.1\|2559629_2559893_+	bacteriophage protein	A0A0U4JX18	Pseudomonas_phage	2.4e-44	96.6
VEE87111.1\|2559896_2560409_-	Uncharacterised protein	L7TIE6	Pseudomonas_virus	1.2e-92	92.9

DBSCAN-SWA_6

3217232 : 3255894

Pseudomonas_phage(40.0%)

integrase,coat

attL 3207033:3207047|attR 3240195:3240209

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3207033:3207047	attL	NA	NA	NA	NA
VEE87632.1\|3217232_3218090_-\|integrase	integrase catalytic subunit	NA	NA	NA	NA
VEE87633.1\|3222312_3222651_+	Uncharacterised protein	NA	NA	NA	NA
VEE87634.1\|3223245_3223617_-	prophage PSPPH05, DNA-binding protein	NA	NA	NA	NA
VEE87635.1\|3223766_3224786_+	phage/plasmid replication protein, gene II/X family	NA	NA	NA	NA
VEE87636.1\|3224782_3225019_+	Uncharacterised protein	NA	NA	NA	NA
VEE87637.1\|3225812_3226043_+	Uncharacterised protein	NA	NA	NA	NA
VEE87638.1\|3226188_3227481_+\|coat	coat protein A of bacteriophage Pf1	NA	NA	NA	NA
VEE87639.1\|3227489_3227849_+	Uncharacterised protein	NA	NA	NA	NA
VEE87640.1\|3227857_3229123_+	putative phage-related membrane protein	NA	NA	NA	NA
VEE87641.1\|3229518_3229857_+	Uncharacterised protein	NA	NA	NA	NA
VEE87642.1\|3230451_3230823_-	prophage PSPPH05, DNA-binding protein	NA	NA	NA	NA
VEE87643.1\|3230972_3231992_+	phage/plasmid replication protein, gene II/X family	NA	NA	NA	NA
VEE87644.1\|3231988_3232225_+	Uncharacterised protein	NA	NA	NA	NA
VEE87645.1\|3233018_3233249_+	Uncharacterised protein	NA	NA	NA	NA
VEE87646.1\|3233394_3234687_+\|coat	coat protein A of bacteriophage Pf1	NA	NA	NA	NA
VEE87647.1\|3234695_3235055_+	Uncharacterised protein	NA	NA	NA	NA
VEE87648.1\|3235063_3236329_+	putative phage-related membrane protein	NA	NA	NA	NA
VEE87649.1\|3236723_3237062_+	Uncharacterised protein	NA	NA	NA	NA
VEE87650.1\|3237454_3237829_-	prophage PSPPH05, DNA-binding protein	NA	NA	NA	NA
VEE87651.1\|3237974_3238994_+	phage/plasmid replication protein, gene II/X family	NA	NA	NA	NA
VEE87652.1\|3238990_3239227_+	Uncharacterised protein	NA	NA	NA	NA
VEE87653.1\|3240017_3240248_+	Uncharacterised protein	NA	NA	NA	NA
3240195:3240209	attR	NA	NA	NA	NA
VEE87654.1\|3240315_3241758_+\|coat	coat protein A of bacteriophage Pf1	Q56VP1	Pseudomonas_phage	4.9e-14	31.6
VEE87655.1\|3241757_3242069_+	Protein of uncharacterised function (DUF2523)	NA	NA	NA	NA
VEE87656.1\|3242086_3243367_+	zonular occludens toxin	A0A097ZPH8	Ralstonia_phage	7.6e-19	29.3
VEE87657.1\|3243793_3244132_+	Uncharacterised protein	NA	NA	NA	NA
VEE87658.1\|3244523_3244898_-	prophage PSPPH05, DNA-binding protein	NA	NA	NA	NA
VEE87659.1\|3245043_3246063_+	phage/plasmid replication protein, gene II/X family	NA	NA	NA	NA
VEE87660.1\|3246059_3246296_+	Uncharacterised protein	NA	NA	NA	NA
VEE87661.1\|3247086_3247317_+	Uncharacterised protein	NA	NA	NA	NA
VEE87662.1\|3247384_3248827_+\|coat	coat protein A of bacteriophage Pf1	Q56VP1	Pseudomonas_phage	4.9e-14	31.6
VEE87663.1\|3248826_3249138_+	Protein of uncharacterised function (DUF2523)	NA	NA	NA	NA
VEE87664.1\|3249155_3250436_+	zonular occludens toxin	A0A097ZPH8	Ralstonia_phage	7.6e-19	29.3
VEE87665.1\|3250727_3250988_+	Uncharacterised protein	NA	NA	NA	NA
VEE87666.1\|3251308_3251515_-	Uncharacterised protein	NA	NA	NA	NA
VEE87667.1\|3251610_3253011_+	phage/plasmid replication protein, gene II/X family	A7BJY2	Enterobacteria_phage	2.4e-58	36.8
VEE87668.1\|3253010_3253199_+	Uncharacterised protein	NA	NA	NA	NA
VEE87669.1\|3253543_3253888_+	Uncharacterised protein	NA	NA	NA	NA
VEE87670.1\|3254162_3254393_+	Uncharacterised protein	NA	NA	NA	NA
VEE87671.1\|3254460_3255894_+\|coat	coat protein A of bacteriophage Pf1	NA	NA	NA	NA

DBSCAN-SWA_7

5074587 : 5148382

Pseudomonas_virus(59.57%)

coat,protease,plate,terminase,integrase,transposase,head,tail,capsid,portal

attL 5103077:5103095|attR 5153017:5153035

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE89817.1\|5074587_5075136_-\|integrase	Putative integrase regulator R protein	NA	NA	NA	NA
VEE89819.1\|5075132_5075921_-	integrating conjugative element protein	NA	NA	NA	NA
VEE89821.1\|5076109_5076862_-	OST-HTH/LOTUS domain	NA	NA	NA	NA
VEE89823.1\|5077100_5078294_-	Uncharacterised protein	NA	NA	NA	NA
VEE89825.1\|5078297_5078858_-	coproporphyrinogen III oxidase	NA	NA	NA	NA
VEE89827.1\|5078875_5080519_-	integrating conjugative element ParB	NA	NA	NA	NA
VEE89829.1\|5080511_5080748_-	cobyrinic acid a,c-diamide synthase	NA	NA	NA	NA
VEE89831.1\|5080731_5081598_-	chromosome partitioning protein	NA	NA	NA	NA
VEE89833.1\|5081638_5081857_-	phage transcriptional regulator AlpA	NA	NA	NA	NA
VEE89835.1\|5081998_5082757_-	receptor protein-tyrosine kinase	NA	NA	NA	NA
VEE89837.1\|5083296_5084205_-	LysR family transcriptional regulator	NA	NA	NA	NA
VEE89839.1\|5084326_5084479_+	protein TnpC1	NA	NA	NA	NA
VEE89841.1\|5084521_5084698_+\|transposase	transposase, IS66 family	NA	NA	NA	NA
VEE89843.1\|5084811_5085189_-\|transposase	IS110 family transposase	NA	NA	NA	NA
VEE89845.1\|5085790_5086360_+	molecular chaperone	NA	NA	NA	NA
VEE89847.1\|5086454_5089304_+	ATPase	K4FB40	Cronobacter_phage	4.5e-128	40.8
VEE89849.1\|5089320_5090751_+	phospholipase D/Transphosphatidylase	NA	NA	NA	NA
VEE89851.1\|5090778_5092608_+\|protease	ATP-dependent metalloprotease FtsH	C7U047	Ostreococcus_tauri_virus	2.6e-105	41.3
VEE89853.1\|5092686_5093145_+	molecular chaperone	NA	NA	NA	NA
VEE89855.1\|5093167_5094082_+	YfdX protein	NA	NA	NA	NA
VEE89857.1\|5094184_5095072_+	YfdX protein	NA	NA	NA	NA
VEE89859.1\|5095168_5095780_+	membrane protein	NA	NA	NA	NA
VEE89861.1\|5095859_5097005_+	Uncharacterised protein	NA	NA	NA	NA
VEE89863.1\|5096994_5097435_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	5.8e-11	38.5
VEE89865.1\|5097438_5099154_+	glutathione-regulated potassium-efflux system protein KefB	NA	NA	NA	NA
VEE89867.1\|5099150_5099582_+	Predicted membrane protein	NA	NA	NA	NA
VEE89869.1\|5099625_5100591_+\|protease	Zn-dependent protease with chaperone function	NA	NA	NA	NA
VEE89871.1\|5100615_5101767_+	peptidase S1 and S6 chymotrypsin/Hap	A0A1B1IT49	uncultured_Mediterranean_phage	2.8e-28	31.0
VEE89873.1\|5101999_5102908_+	LysR family transcriptional regulator	NA	NA	NA	NA
5103077:5103095	attL	NA	NA	NA	NA
VEE89875.1\|5103891_5104617_+	zeta toxin	NA	NA	NA	NA
VEE89877.1\|5104625_5104784_+	Uncharacterised protein	NA	NA	NA	NA
VEE89879.1\|5104854_5105910_-\|portal	presumed portal vertex protein	Q9ZXM6	Pseudomonas_virus	1.4e-196	96.9
VEE89881.1\|5105909_5107691_-\|terminase	terminase, ATPase subunit	Q9ZXM5	Pseudomonas_virus	0.0e+00	99.8
VEE89883.1\|5107825_5108647_+\|capsid	putative capsid scafolding protein	Q9ZXM4	Pseudomonas_virus	1.5e-129	93.0
VEE89885.1\|5108682_5109699_+\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	6.6e-191	99.1
VEE89887.1\|5109704_5110406_+\|terminase	phage small terminase subunit	Q9ZXM2	Pseudomonas_virus	4.8e-124	99.1
VEE89889.1\|5110509_5110971_+\|head	phage head completion protein	Q9ZXM1	Pseudomonas_virus	3.1e-79	98.0
VEE89891.1\|5110970_5111183_+\|tail	phage P2 tail gpX-like protein	Q9ZXL9	Pseudomonas_virus	4.9e-32	94.1
VEE89893.1\|5111207_5111561_+	Uncharacterised protein	Q9ZXL8	Pseudomonas_virus	6.0e-59	100.0
VEE89895.1\|5111562_5111835_+	Protein of uncharacterised function (DUF754)	Q9ZXL7	Pseudomonas_virus	1.2e-38	98.9
VEE89897.1\|5111831_5112638_+	putative peptidoglycan-binding domain-containing protein	Q9ZXL6	Pseudomonas_virus	2.6e-142	96.5
VEE89899.1\|5112634_5112877_+	Uncharacterised protein	NA	NA	NA	NA
VEE89901.1\|5112873_5113335_+	phage P2 LysB-like protein LysB	Q9ZXL5	Pseudomonas_virus	5.3e-63	87.6
VEE89903.1\|5113412_5113949_+\|tail	tail fiber protein	Q9ZXL3	Pseudomonas_virus	7.9e-95	98.9
VEE89905.1\|5113941_5114400_+	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	7.0e-68	89.5
VEE89907.1\|5114469_5115042_+\|plate	baseplate assembly protein	Q9ZXL0	Pseudomonas_virus	3.6e-93	98.9
VEE89909.1\|5115038_5115383_+\|plate	phage baseplate assembly protein	Q9ZXK9	Pseudomonas_virus	7.9e-56	97.4
VEE89911.1\|5115379_5116294_+\|plate	baseplate assembly protein J (GpJ)	Q9ZXK8	Pseudomonas_virus	1.0e-163	99.3
VEE89913.1\|5116293_5116830_+	putative bacteriophage protein	Q9ZXK7	Pseudomonas_virus	1.5e-98	98.9
VEE89914.1\|5116831_5119222_+\|tail	tail fiber	Q9ZXK6	Pseudomonas_virus	0.0e+00	89.2
VEE89916.1\|5119273_5119735_+\|tail	tail fiber assembly protein	Q9ZXK5	Pseudomonas_virus	1.1e-36	53.9
VEE89918.1\|5119825_5121001_+\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	3.0e-219	98.5
VEE89920.1\|5121057_5121573_+\|tail	major tail tube protein FII	Q9ZXK3	Pseudomonas_virus	7.4e-90	94.7
VEE89922.1\|5121627_5121957_+\|tail	phage tail protein	Q9ZXK2	Pseudomonas_virus	1.5e-48	95.4
VEE89924.1\|5122074_5124834_+\|tail	phage tail fiber protein	Q9ZXK0	Pseudomonas_virus	0.0e+00	92.6
VEE89927.1\|5124839_5125280_+\|tail	tail formation protein, phage P2 GpU	Q9ZXJ9	Pseudomonas_virus	1.8e-76	99.3
VEE89929.1\|5125276_5126551_+	late control gene D protein	Q9ZXJ8	Pseudomonas_virus	9.3e-235	97.4
VEE89932.1\|5127170_5128172_-	Uncharacterised protein	NA	NA	NA	NA
VEE89934.1\|5128537_5128744_-	DNA-binding protein	NA	NA	NA	NA
VEE89936.1\|5129034_5129265_+	phage-associated protein, BcepMu gp16 family	NA	NA	NA	NA
VEE89938.1\|5129264_5129798_+	Uncharacterised protein	Q9ZXJ2	Pseudomonas_virus	9.1e-75	96.7
VEE89940.1\|5129794_5130073_+	transcriptional activator Ogr/delta	Q9ZXJ1	Pseudomonas_virus	5.5e-15	47.3
VEE89942.1\|5130069_5130429_+	Uncharacterised protein	A0A2H4J947	uncultured_Caudovirales_phage	1.0e-13	44.4
VEE89944.1\|5130496_5130730_+	Uncharacterised protein	NA	NA	NA	NA
VEE89946.1\|5130742_5133466_+	Toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	1.5e-277	51.5
VEE89948.1\|5133519_5133660_+	Uncharacterised protein	NA	NA	NA	NA
VEE89950.1\|5133712_5134444_+	Uncharacterised protein	X5IGG9	Pseudomonas_phage	9.3e-30	34.3
VEE89952.1\|5134454_5134796_+	Uncharacterised protein	A0A0U4JP55	Pseudomonas_phage	2.9e-26	56.2
VEE89954.1\|5134865_5135306_+	Uncharacterised protein	NA	NA	NA	NA
VEE89956.1\|5135302_5135479_+	Uncharacterised protein	NA	NA	NA	NA
VEE89958.1\|5135471_5137382_+	C-5 cytosine-specific DNA methylase	A0A0U1T6D1	Pseudomonas_phage	1.5e-284	94.2
VEE89960.1\|5137378_5138611_+	phosphoadenosine phosphosulfate reductase	R9TRT5	Rhizobium_phage	4.7e-175	71.6
VEE89962.1\|5138621_5138798_+	Uncharacterised protein	Q38017	Pseudomonas_virus	5.5e-05	70.6
VEE89964.1\|5138794_5139163_+	ASCH domain	A0A291AUQ6	Sinorhizobium_phage	2.7e-30	50.4
VEE89966.1\|5139159_5139363_+	Uncharacterised protein	A0A2H4J958	uncultured_Caudovirales_phage	1.2e-08	50.0
VEE89968.1\|5139565_5140768_-\|integrase	integrase	A0A248SL35	Klebsiella_phage	4.9e-36	30.9
VEE89970.1\|5141102_5141450_-	plasmid stabilization system protein	NA	NA	NA	NA
VEE89972.1\|5141924_5142908_-\|integrase	bacteriophage integrase	Q56VN7	Pseudomonas_phage	6.8e-92	52.3
VEE89974.1\|5142907_5144200_-	Uncharacterised protein	Q56VN8	Pseudomonas_phage	2.8e-247	94.2
VEE89976.1\|5144337_5144448_-	Uncharacterised protein	NA	NA	NA	NA
VEE89978.1\|5144458_5145721_-	zona occludens toxin	Q56VN9	Pseudomonas_phage	1.3e-116	55.2
VEE89980.1\|5145722_5146073_-	bacteriophage protein	Q56VP0	Pseudomonas_phage	5.5e-20	41.1
VEE89982.1\|5146082_5146973_-\|coat	putative coat protein A of bacteriophage Pf1	NA	NA	NA	NA
VEE89984.1\|5147343_5147562_-	Uncharacterised protein	NA	NA	NA	NA
VEE89986.1\|5147575_5147827_-	Uncharacterised protein	NA	NA	NA	NA
VEE89988.1\|5147838_5147931_-	Uncharacterised protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
VEE89990.1\|5147947_5148382_-	helix destabilizing protein of bacteriophage Pf1	Q56VP5	Pseudomonas_phage	3.0e-60	86.8
5153017:5153035	attR	NA	NA	NA	NA

DBSCAN-SWA_8

5742577 : 5797712

Pseudomonas_phage(56.25%)

integrase,coat,tRNA

attL 5770024:5770040|attR 5801773:5801854

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE91078.1\|5742577_5743126_+\|coat	Spore coat protein U	NA	NA	NA	NA
VEE91080.1\|5743156_5743690_+\|coat	spore coat protein U	NA	NA	NA	NA
VEE91082.1\|5743689_5744232_+\|coat	spore coat protein U	NA	NA	NA	NA
VEE91084.1\|5744250_5745039_+	putative pili assembly chaperone	NA	NA	NA	NA
VEE91086.1\|5745055_5747428_+	putative type 1 pili usher protein CsuD	NA	NA	NA	NA
VEE91088.1\|5747424_5748372_+\|coat	spore coat protein U	NA	NA	NA	NA
VEE91090.1\|5748373_5749747_-	major facilitator superfamily transporter	NA	NA	NA	NA
VEE91092.1\|5750026_5751049_-	ferrochelatase	NA	NA	NA	NA
VEE91094.1\|5751045_5751963_-	sugar nucleotide epimerase	NA	NA	NA	NA
VEE91096.1\|5752376_5753360_+	oxidoreductase	NA	NA	NA	NA
VEE91099.1\|5753512_5754469_+	protein YbgA	NA	NA	NA	NA
VEE91101.1\|5754478_5755378_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	8.5e-17	39.1
VEE91103.1\|5755389_5756820_+	deoxyribodipyrimidine photolyase	A0A167RC11	Powai_lake_megavirus	2.4e-45	27.8
VEE91105.1\|5756945_5757467_-	Lipid A 3-O-deacylase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.4e-59	69.8
VEE91107.1\|5757600_5758398_-	glutamate racemase	NA	NA	NA	NA
VEE91109.1\|5758387_5759146_-	molybdopterin biosynthesis protein MoeB	NA	NA	NA	NA
VEE91111.1\|5759139_5759970_-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase	NA	NA	NA	NA
VEE91113.1\|5759971_5761054_-	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	5.6e-07	48.3
VEE91115.1\|5761071_5762340_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
VEE91117.1\|5762528_5764256_+	tpr domain-containing protein	NA	NA	NA	NA
VEE91119.1\|5764260_5764878_+	outer membrane lipoprotein LolB	NA	NA	NA	NA
VEE91121.1\|5764879_5765728_+	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
VEE91123.1\|5766952_5767567_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
VEE91125.1\|5767608_5768193_+\|tRNA	peptidyl-tRNA hydrolase	NA	NA	NA	NA
VEE91127.1\|5768233_5769334_+	GTP-binding protein YchF	NA	NA	NA	NA
VEE91129.1\|5769539_5770751_+\|integrase	phage integrase family site specific recombinase	A0A1B0VMI6	Pseudomonas_phage	1.1e-56	34.4
5770024:5770040	attL	NA	NA	NA	NA
VEE91131.1\|5771012_5772113_+	fic family protein	NA	NA	NA	NA
5770024:5770040	attL	NA	NA	NA	NA
VEE91133.1\|5772122_5777396_+	helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	8.7e-61	22.9
VEE91135.1\|5777402_5780186_+	helicase/SNF2 family domain protein	A0A1B1IUI1	uncultured_Mediterranean_phage	2.2e-39	26.7
VEE91137.1\|5780210_5784683_+	type II restriction enzyme, methylase subunit	A0A1B1IUC6	uncultured_Mediterranean_phage	5.7e-37	23.7
VEE91139.1\|5784723_5786616_+	ATPase involved in DNA repair	NA	NA	NA	NA
VEE91141.1\|5786665_5787433_+	Uncharacterised protein	NA	NA	NA	NA
VEE91143.1\|5787447_5787549_+	Uncharacterised protein	NA	NA	NA	NA
VEE91145.1\|5787600_5788464_-\|integrase	integrase	NA	NA	NA	NA
VEE91147.1\|5790437_5791439_-\|integrase	integrase	F1BUS9	Erwinia_phage	2.9e-74	46.5
5790918:5790934	attR	NA	NA	NA	NA
VEE91149.1\|5791435_5792728_-	Uncharacterised protein	Q56VN8	Pseudomonas_phage	8.8e-241	92.0
5790918:5790934	attR	NA	NA	NA	NA
VEE91151.1\|5792865_5792976_-	Uncharacterised protein	NA	NA	NA	NA
VEE91153.1\|5792986_5794141_-	zona occludens toxin	Q56VN9	Pseudomonas_phage	4.6e-100	54.6
VEE91155.1\|5794128_5794248_-	zona occludens toxin	Q56VN9	Pseudomonas_phage	2.8e-05	83.3
VEE91157.1\|5794249_5794600_-	bacteriophage protein	Q56VP0	Pseudomonas_phage	5.5e-20	41.1
VEE91159.1\|5794609_5795497_-\|coat	putative coat protein A of bacteriophage Pf1	NA	NA	NA	NA
VEE91161.1\|5795867_5796086_-	Uncharacterised protein	NA	NA	NA	NA
VEE91163.1\|5796099_5796351_-	Uncharacterised protein	NA	NA	NA	NA
VEE91166.1\|5796362_5796455_-	Uncharacterised protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
VEE91168.1\|5796471_5796906_-	helix destabilizing protein of bacteriophage Pf1	Q56VP5	Pseudomonas_phage	4.3e-59	95.8
VEE91170.1\|5797421_5797712_-	Uncharacterised protein	Q56VP7	Pseudomonas_phage	4.3e-55	97.9
5801773:5801854	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: LR134309.1|VEE90743.1|5560584_5560959_+|Uncharacterised-protein

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Acr_ID: LR134309.1|VEE90747.1|5563111_5563435_+|Uncharacterised-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR134309.1|VEE90743.1|5560584_5560959_+|Uncharacterised-protein

5560584_5560959_+

124 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|27	1.0	1	1.0

LR134309.1|VEE90747.1|5563111_5563435_+|Uncharacterised-protein

5563111_5563435_+

107 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|15	0.6213592233009708	0.9719626168224299	0.99

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134309

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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