CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134313	Neisseria canis strain NCTC10296 genome assembly, chromosome: 1	2 crisprs	DEDDh,DinG,WYL,cas3,csa3,cas2,cas1,cas4,cas7,cas8c,cas5	1	6	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134313_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134313_1

1900225-1900321

Orphan

Consensus_repeat	Method
ACACACCCCGCTGTTGGTTTCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134313_1

>merge|LR134313|1|1900225-1900321|CRISPRCasFinder
ACACACCCCGCTGTTGGTTTCAAACTGTGTCCGGGGGACACACCCAGTTTATTGGTTTTAACTGTGTAGGGGCTACACACCCGGCTGTTGGTTTCAA

>LR134313|1|1|1900225-1900321|CRISPRCasFinder
ACACACCCCGCTGTTGGTTTCAA	ACTGTGTCCGGGGGACACACCCAGTTTATTGGTTTTAACTGTGTAGGGGCT
ACACACCCGGCTGTTGGTTTCAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134313.1\|VEF02490.1\|1900474_1901005_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|371813
LR134313.1\|VEF02498.1\|1904536_1906228_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134313.1\|VEF02474.1\|1891757_1892714_-\|protein-TraF	unknown	unknown	gnl\|CDD\|372692
LR134313.1\|VEF02486.1\|1897055_1899563_-\|protein-TraC	unknown	unknown	gnl\|CDD\|274279
LR134313.1\|VEF02484.1\|1896493_1897036_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134313.1\|VEF02504.1\|1907644_1909336_-\|ParB-family-partitioning-protein	unknown	unknown	gnl\|CDD\|213858
LR134313.1\|VEF02502.1\|1906980_1907610_-\|Protein-of-uncharacterised-function-(DUF2857)	unknown	unknown	unknown
LR134313.1\|VEF02500.1\|1906240_1906978_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134313.1\|VEF02470.1\|1889960_1891481_-\|protein-TraH	unknown	unknown	gnl\|CDD\|368759
LR134313.1\|VEF02472.1\|1891477_1891756_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134313.1\|VEF02494.1\|1902062_1902644_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134313.1\|VEF02492.1\|1901387_1901777_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134313.1\|VEF02506.1\|1909328_1910231_-\|protein-ParA	unknown	unknown	gnl\|CDD\|224113
LR134313.1\|VEF02488.1\|1899631_1900069_-\|protein-SsbB	unknown	unknown	gnl\|CDD\|239942
LR134313.1\|VEF02496.1\|1902889_1904119_-\|integrating-conjugative-element-protein,-PFL_4669-family	unknown	unknown	gnl\|CDD\|378089
LR134313.1\|VEF02480.1\|1894938_1895862_-\|type-F-conjugative-transfer-system-protein-TraW	unknown	unknown	gnl\|CDD\|370610
LR134313.1\|VEF02508.1\|1910542_1911322_+\|Protein-of-uncharacterised-function-(DUF328)	unknown	unknown	gnl\|CDD\|234999
LR134313.1\|VEF02476.1\|1892723_1893761_-\|Polar-organelle-development-protein	unknown	unknown	gnl\|CDD\|276807
LR134313.1\|VEF02482.1\|1895974_1896490_-\|Type-IV-secretory-pathway,-protease-TraF	unknown	unknown	gnl\|CDD\|274044
LR134313.1\|VEF02478.1\|1893769_1894942_-\|protein-TraU	unknown	unknown	gnl\|CDD\|377717

Protein	Function_ID	Function_description	E-value
LR134313.1\|VEF02490.1\|1900474_1901005_-\|Uncharacterised-protein	gnl\|CDD\|371813	pfam11947, DUF3464, Protein of unknown function (DUF3464). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.	0.000469379
LR134313.1\|VEF02474.1\|1891757_1892714_-\|protein-TraF	gnl\|CDD\|372692	pfam13728, TraF, F plasmid transfer operon protein. TraF protein undergoes proteolytic processing associated with export. The 19 amino acids at the amino terminus of the polypeptides appear to constitute a typical membrane leader peptide - not included in this family, while the remainder of the molecule is predicted to be primarily hydrophilic in character. F plasmid TraF and TraH are required for F pilus assembly and F plasmid transfer, and they are both localized to the outer membrane in the presence of the complete F transfer region, especially TraV, the putative anchor.	1.27188e-50
LR134313.1\|VEF02486.1\|1897055_1899563_-\|protein-TraC	gnl\|CDD\|274279	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.	1.20121e-130
LR134313.1\|VEF02504.1\|1907644_1909336_-\|ParB-family-partitioning-protein	gnl\|CDD\|213858	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.	1.07991e-44
LR134313.1\|VEF02506.1\|1909328_1910231_-\|protein-ParA	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	6.00543e-31
LR134313.1\|VEF02470.1\|1889960_1891481_-\|protein-TraH	gnl\|CDD\|368759	pfam06122, TraH, Conjugative relaxosome accessory transposon protein. The TraH protein is thought to be a relaxosome accessory component, also necessary for transfer but not for H-pilus synthesis within the conjugative transposon.	1.44341e-32
LR134313.1\|VEF02488.1\|1899631_1900069_-\|protein-SsbB	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	1.21611e-09
LR134313.1\|VEF02496.1\|1902889_1904119_-\|integrating-conjugative-element-protein,-PFL_4669-family	gnl\|CDD\|378089	pfam08900, DUF1845, Domain of unknown function (DUF1845). This family of proteins are functionally uncharacterized.	2.55787e-19
LR134313.1\|VEF02480.1\|1894938_1895862_-\|type-F-conjugative-transfer-system-protein-TraW	gnl\|CDD\|370610	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein. This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins is heterogeneous.	2.76462e-10
LR134313.1\|VEF02508.1\|1910542_1911322_+\|Protein-of-uncharacterised-function-(DUF328)	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	6.25941e-139
LR134313.1\|VEF02476.1\|1892723_1893761_-\|Polar-organelle-development-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.23411e-10
LR134313.1\|VEF02482.1\|1895974_1896490_-\|Type-IV-secretory-pathway,-protease-TraF	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	3.05127e-12
LR134313.1\|VEF02478.1\|1893769_1894942_-\|protein-TraU	gnl\|CDD\|377717	pfam06834, TraU, TraU protein. This family consists of several bacterial TraU proteins. TraU appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments.	2.54304e-20

>LR134313.1|VEF02488.1|1899631_1900069_-|protein-SsbB
MSVKIEIRGNIGDGIKIQEGERNGEQYKVLSFSVASTKLKKQIVNGKEEYVADGTTWYNCSYWNKDVDVLHANLQKGLPVTVTGHVVRTATYTSKQTGEILPAIDVRIENVYLNLNSKRVEEIKLKPARGPNETDPDVDDEGDPF
>LR134313.1|VEF02486.1|1897055_1899563_-|protein-TraC
MALDFFKMNQNRDRGVQFISLKTALDDTKIHYFEKENAIGVIGEFAPVSGWSRTLGNAVVEMLNMDFPADTFTQFIQLNYPYVDTRLEQYLKERAGYDGDISVRMAQQAVRERAAFLSKGCEHALIPSSDIRTFSSLGLWTLKIPLKKAKNPIKANDAELDRFYDECDQFLKLVAVCRSHLDAAGLPVSLLDRHGSMAVLRRYFNIKGPWDSGLSDNEPLNEQLFPPGSAGDWEAVNTPFMHFSNFGEMGQEQYVGALTIDRYPDQTTKWHMSKMNELLGNPAGRNPQPGVPFAITTTIHYPEQNKERAKFVAATTTTEKSAKQESTRKYNNRISARQAGFKLMNKSLGEGGQVVNVNTTIQFFHENQEKVRDAMTRMQSYLSSMGMVMKPETFLPEVSFLNNLPMNISAESIKKTFRFRTMTSRLAAHLLPVFDDWGGYGNEMMFTTRRGKLVSYSIFHDNNSNYNTMILGEPGAGKTTATQNIIEAELSLGAKVWTVDTGSSNVASASVRGAEILDIHEKSDLCLNPFTKVSDFNKEAEMILPILGKMAKPIEGLNDYENVLMLDAMKQMFTRNQNHTDIDDIIDYLYSQSGRDAEIQHRLARLLSPFGSDMPMGRWFNGTNNFRTEADWTLIELSGMSNNEHLRDVILMVVASTIKQEVYLSRDNRRRILVLGECGELLGNRPFAEFTARLTSKNRKEDGGVVVEAQHLGQVHATEYGALIQGNCYTKMFLKTPADSLENARKQGWFEPSPYIDGLLKSLHTVAGQYSEICIIAGDNLATIVRLIETPYNRVMYNTKGPMFKELQNRVRNGEDVTDLIAAEARALYGDGTYD
>LR134313.1|VEF02484.1|1896493_1897036_-|Uncharacterised-protein
MNENQTPFPQQPIPAQGQDKTPTSASGMFFIVLMISLLALLLGGYSFYKIVYGNNSASGIYVVDGVRLTASYLEKARKEQAAGYKTPEQIERETLATEQAVQAAIEKLAADGKVVIQSRNTLAYPGESDITTQIAEDLGITLLPEKRQTELLGQKIGSADAIPGALPQDDSDDRTGSGLD
>LR134313.1|VEF02482.1|1895974_1896490_-|Type-IV-secretory-pathway,-protease-TraF
MKHFDFSRKRLLTGFILGLVLIAVKTGYDHAYPNRKLLVGKQVMSCLPWDFYYWDSDRPVGEIKRYDLLIFPARKMQPVIKDGEKIVKMAAGLPGDKVTIRDGIVSINGSIIGDMAYGAKSFRQPMNYWDKEYVLQPNEIFVFGTEYNSYDSRYWGAYPMDLVDGHVSVLF
>LR134313.1|VEF02480.1|1894938_1895862_-|type-F-conjugative-transfer-system-protein-TraW
MLLPNGQHPTMRELSPTRTVVFLSRSMPETTLINLLKQGAGRKDVVFAFRGWGDGPVTDMFKYSKNLLGKLPAQARKKPPQIIVMPVAFREYRIHYVPAVLHRDNDNKWYLLQGTQSLDAAVGTIRARRFNERVSRQYRVSEPDQAVVMEQKMKRQDIRPHIQAAQQSARKLLEGTVTLPVNTEYRRYNYAPFVASTSDIVNPRDGKVLYPKGTRFNVLALDPQGKRAMAVIDGRSRWQVEFARHLVAKKPDTLVLYTKLGYLANAGIPASPLDAAMKGRLKVTGVPTYYRQNGMVFNVVAVREGKR
>LR134313.1|VEF02478.1|1893769_1894942_-|protein-TraU
MKVKRFSLIALVAAGLTAWPLAATANTCSNAGMETLMQFDFDSAFPLRIMGQTVVEGGDVPNPPGATSKSICKCGEEPYVIYGYTRGMWLPTRFVEVVREATCSPVYGSSVKTMLQQLAKVNGVAAKSVKAGTNLTGGGEGMNAYETGFRHYHSWSFPYSDMYGWTPRCFHKGDELETSITQPAWSGSDQVFSNLLYPEWMALGVLTATPLFDLAAHTASCAANTTGVGWGMVDDAGYWLGGCMGMNLPAVGVMSSERGNIIGTSTILNRSIMVSNRTGGFASMKTVGDDALCSPIPAPFPAKSEFKAAMLFPYPENGSGADSGDSVEGAVSAQLSGAVADFFNIGSKGAHRLGASDFSWAKGRNDQSTNSNDTDAVYLLWRWVDCCEFD
>LR134313.1|VEF02476.1|1892723_1893761_-|Polar-organelle-development-protein
MKPNTIAFALIFCAATAAAQPSAEQKVFGTPGAATGTAAAKTPQPQAASKTVTPAVKTAKTANKLPPQAQAKQMYDRFNAGDLLYASKLKDAANAGNPWAALQYGFLAHRGRLPGQKGVNLALAHKAYMKAVRQGGTLTGNHLAAYNLGLIYYYGGNGFAKDGREALKWFGLANQSYREFKKSQGATFWPAALYSAQILENGYGGVKADKAAARVHWQAAARANDPAALYGLAHSVAPENPFVAIASFKKAADRWHVPSMLALAKWYSTNDRLHQADPVQAAAWLQTAAMVDRRYSAQAAGYSRRLNAKQQQTASSKAAQWFKSRGMKPPVHDYSAPLNEDPAAR
>LR134313.1|VEF02474.1|1891757_1892714_-|protein-TraF
MNRKLKLSLMTVAMLSAAVAWSQRNAFDAAQPEGYFWYKDKPKQVKKEEPKPEEKTPQLQPVAPSQSPVLKPGSAEWFRQTEQKLLDNLSSDPSEKNALAYKAFERLRNDRVDEVARTTEKILNKYPYLSEAVRVPIAAHARQQALWQIDQAKEGIIGDLRNKAGLWMFFDSNCNFCHAQYETVKMLEQKYRMQVRYISIDGGVIKGMNQKQVRFDNGGSRARQFGIKVTPAVVMVVPPETAAIIAHGAMSLSDLEEKIVTAAIDMKIADPKLTRTAKMNERGMIEQSDWEAAGFTGTETPEELSEKIYRIITKKMEQ
>LR134313.1|VEF02472.1|1891477_1891756_-|Uncharacterised-protein
MNAFKLTHVQEAYGRDYRQAYPIIGEICAHDLQRRCELIEEREKMIGEIGEHMSSVFYERMDSYLIRRDAVCGSDLDALLEKIEKFLGVPPV
>LR134313.1|VEF02470.1|1889960_1891481_-|protein-TraH
MNLIKRLSNVIGILLTVVLLAVSSNVRADIGKGMDMMWTQTNPSFGAVNGNYGGQLGGFSMRSPVRSFNIVAYDPPRFAAGCGGIDASFGSFSMISLDNMRNIMRGIMSNAGGYTAKVVLDNLCTRCQGIMTGLHDLTSKINSASKNTCQIGSHLVDAARGATQLGSLWKNDGLSSREAVTAAAKGAFSDFYEANENRFKNGQNANREGNAADESTIYGNNLMNTLASTGVFGNGSSAAASIDTAPYGGDQGFLELAMNLYGTDINLTGSNAASSSSGGDFAKGSTNRKDKQLAPLWSFDDLVNGAPTGGNLNGYSCADFNVSKADSCQNVAVKQTEYPGTKRYIIGLLAGKQTNMGDSNVMGDSRTSAIAPDSIMAYLSDNSVTLDERQHRFLNALPIETRTALSSVAATGNTALMAMMVDYVAESLGRNMAAELVQAMNKTLSVSYSANVSNGKDIAPMSEVQKAQSDKLERRAEIYLDPESRSRMQRSILNQTNITMKLNGLN
>LR134313.1|VEF02490.1|1900474_1901005_-|Uncharacterised-protein
MTNEKYLSQELKTEQPLPRFIAYLKLAMAVLAVLWFVGMTFFVAYLLMTSTGIADVPTWIIYLLGGGFFVLGFTSTIINAVGNQWQYGHLKLDNTLILMAWMMVFGVYSGIQLVGDENRLGDNDRVLIMHGINSLASRAAANDDSEQLAFWCQERVRYEQQFKGWLLPDMPEACKH
>LR134313.1|VEF02492.1|1901387_1901777_-|Uncharacterised-protein
MQNQNKTKQIFEWISAERPSEILPASVAGCIFEFSQVVSRMMGELNITPTRENVLMTAKQFYILANQYLNKKLPDVAGSLEGLTEFQLQQSVYQKCQTALDGKCEDGLDRLKSYLSLEQNFMQYLGLVT
>LR134313.1|VEF02494.1|1902062_1902644_-|Uncharacterised-protein
MPRQFDTFQDLSVHYISDSYKSLLRVRGGEELPQQINRLENEWLQLIKEADTFMKECKNLFQRKYLFLSLKIVYQYNKSENMKHYDRKKFYLPYLSFCYRNKSLTQWKDVQPLLQQMQATVEETILHMWVFKGCKDFYLRARMLSSQIDNLTEYHNLNSHLLQSTSLEKSMLPKAMLMVPDENKLPGSGYWGV
>LR134313.1|VEF02496.1|1902889_1904119_-|integrating-conjugative-element-protein,-PFL_4669-family
MTGANVEQPVSKWDRRLVKQQIIIQARSIKAGADTGMNAGIRGTTTEFPTTDKSYFSDRYDWQGEKERLGILATGAVYVSEDDENYASVQNFKYHSMLLRRHIHRNHSNGRLRSRIKPEQINLDNYEIYTSEDESFGAVGNLTDQEQDFIELHTKDAVRLWTGKNDKKLGHKRYAGIQYVIPLSIQIWNEARNNNPFAYAALLAIETELDTLIKYLKAQIQILQTQLNKINQTGIHVSLRVNKDTIKIPVRVANLGFQLLELLTMYDELMRYCYTYLNKKIELNEESVEATGFDSVFELKKHVSSSCRIFNQNVYHRAMKIRSLKEIKCRCPDLLNDVDGEIGEKLSQAVKAKMVEPLTPEILSYEVKLKSGNLKNPFSQEATQQLIEYARKHGLIVEENSIQKSDAGE
>LR134313.1|VEF02498.1|1904536_1906228_-|Uncharacterised-protein
MFPTKNTFSPTAVMSPEEYNKTLMQCWKMLQAGRRVSIHRSLIQITGNDIKTAAFLSQLLYWLRVGTEVEQWDGWIFKSIQQTEYETGLTKTEQRKCKDDLKKLGFIQTGFFGQGRNLAFKINIDAICKAVCAHFGVQNMSQITLEDWRKQELDFFRIYFSDSVVYHMSLVQMTGDIYIAIMLSDILYNCAKNGSETSKLFKRQRLFSTATMLEWENRTFITRTTQNRARKFLKHHGLIVEAHYLRNARIFTHPDGLLLMQLLKQRVRLPKLNQSVKPHAAHPEMQQQSLLPQSAFSENCGNIAKPATPQVLNPASSGLASAESCNSQMLNPASSGLASAESCNSQMLNPASSGLASAESCNSQMLNPASSGLASAESCNSLIYKKPTVFSITTTTNSHEQSEHSENGRNDVVVVVDECLNQEHQARPFVAVGRFSGLVFPPNIHPEDKSSVIKIFNQYLPNADLETYQQILDETGAGGKNIKNPLSYIVGITKNAAKGEFEPTRAKQYRRQRETAERNRANYENSLRQKFSEEENCLQTAEESRAALREYLKRNTSSQQHKK
>LR134313.1|VEF02500.1|1906240_1906978_-|Uncharacterised-protein
MEEEMNLSLFQYPQLSAEDQGIHANALLGLLFEKEILYQPSYAQLVGDTYAAYWLSWFVSHCRYGESIELNDDDMSHQFGFSMARWHTIRRLLKKLGYLKSSRKSGVVSYSLDEKAFSDAHGEISNNAPLIPVDRITAAAMLDKGMNMTDVLIFSTIKFHMSIRDLQEQNSLDASGNFSTWQDHDSEQKNNLSGYSEIEQYNSIKKLSSLELLQVVLIKELNMLRYRINYKAYGELTYAYVHEYV
>LR134313.1|VEF02502.1|1906980_1907610_-|Protein-of-uncharacterised-function-(DUF2857)
MMENNNIVVAIHSKQNQAGNQHQIQIQNEAELTRMLLDILAKPTTKDIESLNPLTPKKYRDVFTKLGEMSADEKAKLYPQIAKSKAISVLYHMQTIQQILEEDELLKKKHQKQLDEARWLVRNGASNACIRETCTRVSELEIKKIRYDTGCPVKVGRNRALPEEVKLDVINFWKAVVKVELNQYNRLRQLQEAFPNYDLSMLYPATLEK
>LR134313.1|VEF02504.1|1907644_1909336_-|ParB-family-partitioning-protein
MTNKLNTGVVAASILATNPSQSKMDIGKTPTLPSGFSMTVPVSEIDFFEDNPRHIHDPEIYHQIKESIRATGVQQPVHITKRPDAECYVLAHGGNTRLKIVKELYEETGDSRFAQIPCIYVEYLSESHILFAHVVENELRADMYFWDKACMYAKGKEVLEQEHGETLGLRLLEEKLAEKGIKVSFSKLGSYIFAYEKLSALNDICFYLSIQKTLDLRKQYNSLKKISQVSDIDSEALFEVFWDEALSQWAMDQTDVTDLDVPALQQFINERFAAEFDIKDMGSESKTPPSTPPPQQLSQEKTEPKKTEPKLRPAATSKSENAANSDGLDDDKRNIYSGTDELQSDSVGRQPVDPAGGTIIPGNPTSPRENDTTPDIHSDIRLERTRDAIQEDLITSVRRLLECVNLEKYLIIDPNMPYGFLLGLPNCNQEPLASNFNPEILNGYINCLHPAAGAVYHYLWVISSEEALWDGFQTLPNNHNPFDKPGIQGQLFKENRASEITKEQTFNGILNFAMYKERSQWLFFEFVTTEQAALSAYTDFLRFCAELEANGGDNIDYMEADAN
>LR134313.1|VEF02506.1|1909328_1910231_-|protein-ParA
MSVSIGVIGTKGGIGKTTIVSNLGAILADMGFRVLIIDADPQASVSKYFKLHHKAPNGIVEFLLGENSTELMRSVISKTVFPNLDIILSNDFKDDVRRRVDERIDRAFLVMSKLVMPFFDKSYDFILFDTQGAVGPVQDAVALASTVLLTPIKPDVLSVREFISGTQESLNRIRHSAVMNLKVPPMKALIYAQDRTRDSRMISEEVKNYFKVNFLDGNQKLLNTIIPAQKAFKEAATLQTPVHCIEREHPGKSEPALQIMLDLVHELFGIDNKPKFFNELSNLLPEYVNPENADKEDTHD
>LR134313.1|VEF02508.1|1910542_1911322_+|Protein-of-uncharacterised-function-(DUF328)
MLFVLSPAKNLNEKDPAPTQHFTQPELLNQAEELMKEVRSLAPQEIAELMHVSDKIALLNAERNASWHTPFTPENAKQAVFMFNGDVYEGVDAQTLAVKALGYLQNHVRLLSGLYGLLRPLDLIQPYRLEMGTPFVNSRGKNLYEFWGDRITDLLNKTLKQAEAGILINLASQEYFKAVNTRKLNARVITPVFKDEKNGQYKVISFYAKRARGLMVRYAAEHGITEPENLKNFDYEGYAFNLAASNENEWVFLRSEQSK

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Crispr_ID: LR134313_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134313_2

2420837-2423219

TypeI

Consensus_repeat	Method
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CRT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	PILER-CR
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CRISPRCasFinder

36 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of LR134313_2

>merge|LR134313|2|2420837-2423219|CRT,PILER-CR,CRISPRCasFinder
AGTTCAAAATATAGCCGCCCGAAGGCGGCTAGGATTTGCCGAGTTTCTTGTTTCAACACACAGCCGCCCGAAGGCGGCTGAAAAAGCCTCCATTTCGCTCGGCAAAGCCGTTTCGCGTTTCAACACACAGCCGCCCGAAGGCGGCTGATAATGCGCTTGACATCGGCCAGCGCCTCAGAGTAGGTTTCAACACACAGCCGCCCGAAGGCGGCTGGCTGTTGGCCGTAGGCACAGGCGATTTCCAAATCGTTTCAACACACAGCCGCCCGAAGGCGGCTGAGGAGTTTTACAAAAACAAGCCCGGCAATCTGAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGATCGGCTACTGTAAACAATATTGCTTACGGTAACGTTTCAACACACAGCCGCCCGAAGGCGGCTGGCCGTTTGCCAAATTGTTGGAAATGGCCGGCGGCATCAGCGTTTCAACACACAGCCGCCCGAAGGCGGCTGGCAGATATTCGTATTTTGTGGCGACCGAAAATTTAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCCGGTCATTGCGCCTTGCTCTTTAAGCAAGTCGAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTGTATAGTTGATACATGTTTTTTTCTCCAATGGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTGATAAAAAAATTAGAGAGGCTGCTAGTAAAGGGGTTTCAACACACAGCCGCCCGAAGGCGGCTGAGATATTCGTATTTTGTGGCGACCGAAAATTTAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGACACCCTAACACGAAGACCCAACTCGGGTATGGTGTTTCAACACACAGCCGCCCGAAGGCGGCTGAAAGCTGCATTTTCCAGCATCTGTATGCTACCCTGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTAGCAAAGGATGGTTTGTTGAAATCTGGGAAGTAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGTGCGGCTGTATTGGGCGGCGCAATAAGGCCGTCTGTTTCAACACACAGCCGCCCGAAGGCGGCTGGCCACTAAAAAGGCCGTTTTCCACGGCCAATTCGTGTTTCAACACACAGCCGCCCGAAGGCGGCTGCCAACTTGGCATACATACCCGCGGCACCTAAGATGTTTCAACACACAGCCGCCCGAAGGCGGCTGCCTCGCGCATTATGTTGGCAAATACTTGCTGTTGTTTCAACACACAGCCGCCCGAAGGCGGCTGCCCCCCCAAAAATCCATAGAAATATGGATTGGTAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGAGGCGGCTTAAGCCTTGCAATTTGGCATGATGGTTTCAACACACAGCCGCCCGAAGGCGGCTGCAGCTTTTCATTGTAAGATTTCGCCTCAATAAACAGTTTCAACACACAGCCGCCCGAAGGCGGCTGACGCCCGCGCGTTTCGCATGAGCGGCAATATCGCGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTTAGTTACTTGTGTCATTTCAAAACCCATAAAAACGCGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGCTCTTGATGAGAAACCTAAAGCACAGGCTACTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCCCCTACCCTCATCGCCGTTTCCAAAGCAAACAACTGTTTCAACACACAGCCGCCCGAAGGCGGCTGATCCGCCTTGATAGATGTCTCGGATTGTTTGATTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTAAGGCTGTGATAGAGCATGACCATTGGAAACGGTTTCAACACACAGCCGCCCGAAGGCGGCTGATAATCGGCGCTTGAATCGTTTGCCCTGCGGCAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGCCTTGATACCGCGCCCCTTGCGGCGGCCTTTGTGTTTCAACACACAGCCGCCCGAAGGCGGCTGGCCGTTTTTGATGGTAAGACTTGGCGATACAAGGAGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTAAAGCCGCTGCCGCGGCCAAATCCGCACAATCTGTTTCAACACACAGCCGCCCGAAGGCGGCTGCAGTCGCAAATAGGCGGTATACCGTCCGATGCAATGTTTCAACACACAGCCGCCCGAAGGCGGCTGGTTCGGTTTGCGTACCCGACATACGGCTCAACAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGTAGCAATCGCGCCCTTTTCCAACTTCACGGAGTCAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGTTTAAGCGGTGTTTATCAATCAAAAAGGAAATTGTTTCAACACACAGCCGCCCGAAGGCGGCTG

>LR134313|2|1|2420837-2423219|CRT
AGTTCAAAATATAGCCGCCCGAAGGCGGCTA	GGATTTGCCGAGTTTCTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	AAAAAGCCTCCATTTCGCTCGGCAAAGCCGTTTCGC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATAATGCGCTTGACATCGGCCAGCGCCTCAGAGTAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCTGTTGGCCGTAGGCACAGGCGATTTCCAAATC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	AGGAGTTTTACAAAAACAAGCCCGGCAATCTGAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATCGGCTACTGTAAACAATATTGCTTACGGTAAC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCCGTTTGCCAAATTGTTGGAAATGGCCGGCGGCATCAGC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCAGATATTCGTATTTTGTGGCGACCGAAAATTTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TCCGGTCATTGCGCCTTGCTCTTTAAGCAAGTCGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTGTATAGTTGATACATGTTTTTTTCTCCAATGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTGATAAAAAAATTAGAGAGGCTGCTAGTAAAGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	AGATATTCGTATTTTGTGGCGACCGAAAATTTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GACACCCTAACACGAAGACCCAACTCGGGTATGGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	AAAGCTGCATTTTCCAGCATCTGTATGCTACCCTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TAGCAAAGGATGGTTTGTTGAAATCTGGGAAGTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GTGCGGCTGTATTGGGCGGCGCAATAAGGCCGTCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCCACTAAAAAGGCCGTTTTCCACGGCCAATTCGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCAACTTGGCATACATACCCGCGGCACCTAAGAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCTCGCGCATTATGTTGGCAAATACTTGCTGTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCCCCCCAAAAATCCATAGAAATATGGATTGGTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GAGGCGGCTTAAGCCTTGCAATTTGGCATGATG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CAGCTTTTCATTGTAAGATTTCGCCTCAATAAACA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ACGCCCGCGCGTTTCGCATGAGCGGCAATATCGC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTTAGTTACTTGTGTCATTTCAAAACCCATAAAAACGC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TGCTCTTGATGAGAAACCTAAAGCACAGGCTACT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TCCCCTACCCTCATCGCCGTTTCCAAAGCAAACAACT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATCCGCCTTGATAGATGTCTCGGATTGTTTGATT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTAAGGCTGTGATAGAGCATGACCATTGGAAACG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATAATCGGCGCTTGAATCGTTTGCCCTGCGGCAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCTTGATACCGCGCCCCTTGCGGCGGCCTTTGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCCGTTTTTGATGGTAAGACTTGGCGATACAAGGAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TAAAGCCGCTGCCGCGGCCAAATCCGCACAATCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CAGTCGCAAATAGGCGGTATACCGTCCGATGCAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GTTCGGTTTGCGTACCCGACATACGGCTCAACAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GGTAGCAATCGCGCCCTTTTCCAACTTCACGGAGTCAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GTTTAAGCGGTGTTTATCAATCAAAAAGGAAATT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG

>LR134313|2|1|2420886-2423219|PILER-CR
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	AAAAAGCCTCCATTTCGCTCGGCAAAGCCGTTTCGC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATAATGCGCTTGACATCGGCCAGCGCCTCAGAGTAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCTGTTGGCCGTAGGCACAGGCGATTTCCAAATC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	AGGAGTTTTACAAAAACAAGCCCGGCAATCTGAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATCGGCTACTGTAAACAATATTGCTTACGGTAAC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCCGTTTGCCAAATTGTTGGAAATGGCCGGCGGCATCAGC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCAGATATTCGTATTTTGTGGCGACCGAAAATTTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TCCGGTCATTGCGCCTTGCTCTTTAAGCAAGTCGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTGTATAGTTGATACATGTTTTTTTCTCCAATGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTGATAAAAAAATTAGAGAGGCTGCTAGTAAAGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	AGATATTCGTATTTTGTGGCGACCGAAAATTTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GACACCCTAACACGAAGACCCAACTCGGGTATGGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	AAAGCTGCATTTTCCAGCATCTGTATGCTACCCTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TAGCAAAGGATGGTTTGTTGAAATCTGGGAAGTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GTGCGGCTGTATTGGGCGGCGCAATAAGGCCGTCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCCACTAAAAAGGCCGTTTTCCACGGCCAATTCGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCAACTTGGCATACATACCCGCGGCACCTAAGAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCTCGCGCATTATGTTGGCAAATACTTGCTGTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCCCCCCAAAAATCCATAGAAATATGGATTGGTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GAGGCGGCTTAAGCCTTGCAATTTGGCATGATG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CAGCTTTTCATTGTAAGATTTCGCCTCAATAAACA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ACGCCCGCGCGTTTCGCATGAGCGGCAATATCGC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTTAGTTACTTGTGTCATTTCAAAACCCATAAAAACGC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TGCTCTTGATGAGAAACCTAAAGCACAGGCTACT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TCCCCTACCCTCATCGCCGTTTCCAAAGCAAACAACT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATCCGCCTTGATAGATGTCTCGGATTGTTTGATT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTAAGGCTGTGATAGAGCATGACCATTGGAAACG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATAATCGGCGCTTGAATCGTTTGCCCTGCGGCAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCTTGATACCGCGCCCCTTGCGGCGGCCTTTGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCCGTTTTTGATGGTAAGACTTGGCGATACAAGGAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TAAAGCCGCTGCCGCGGCCAAATCCGCACAATCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CAGTCGCAAATAGGCGGTATACCGTCCGATGCAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GTTCGGTTTGCGTACCCGACATACGGCTCAACAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GGTAGCAATCGCGCCCTTTTCCAACTTCACGGAGTCAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GTTTAAGCGGTGTTTATCAATCAAAAAGGAAATT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG

>LR134313|2|2|2420953-2423219|CRISPRCasFinder
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATAATGCGCTTGACATCGGCCAGCGCCTCAGAGTAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCTGTTGGCCGTAGGCACAGGCGATTTCCAAATC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	AGGAGTTTTACAAAAACAAGCCCGGCAATCTGAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATCGGCTACTGTAAACAATATTGCTTACGGTAAC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCCGTTTGCCAAATTGTTGGAAATGGCCGGCGGCATCAGC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCAGATATTCGTATTTTGTGGCGACCGAAAATTTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TCCGGTCATTGCGCCTTGCTCTTTAAGCAAGTCGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTGTATAGTTGATACATGTTTTTTTCTCCAATGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTGATAAAAAAATTAGAGAGGCTGCTAGTAAAGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	AGATATTCGTATTTTGTGGCGACCGAAAATTTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GACACCCTAACACGAAGACCCAACTCGGGTATGGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	AAAGCTGCATTTTCCAGCATCTGTATGCTACCCTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TAGCAAAGGATGGTTTGTTGAAATCTGGGAAGTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GTGCGGCTGTATTGGGCGGCGCAATAAGGCCGTCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCCACTAAAAAGGCCGTTTTCCACGGCCAATTCGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCAACTTGGCATACATACCCGCGGCACCTAAGAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCTCGCGCATTATGTTGGCAAATACTTGCTGTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCCCCCCAAAAATCCATAGAAATATGGATTGGTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GAGGCGGCTTAAGCCTTGCAATTTGGCATGATG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CAGCTTTTCATTGTAAGATTTCGCCTCAATAAACA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ACGCCCGCGCGTTTCGCATGAGCGGCAATATCGC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTTAGTTACTTGTGTCATTTCAAAACCCATAAAAACGC
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TGCTCTTGATGAGAAACCTAAAGCACAGGCTACT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TCCCCTACCCTCATCGCCGTTTCCAAAGCAAACAACT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATCCGCCTTGATAGATGTCTCGGATTGTTTGATT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TTAAGGCTGTGATAGAGCATGACCATTGGAAACG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	ATAATCGGCGCTTGAATCGTTTGCCCTGCGGCAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CCTTGATACCGCGCCCCTTGCGGCGGCCTTTGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GCCGTTTTTGATGGTAAGACTTGGCGATACAAGGAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	TAAAGCCGCTGCCGCGGCCAAATCCGCACAATCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	CAGTCGCAAATAGGCGGTATACCGTCCGATGCAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GTTCGGTTTGCGTACCCGACATACGGCTCAACAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GGTAGCAATCGCGCCCTTTTCCAACTTCACGGAGTCAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTG	GTTTAAGCGGTGTTTATCAATCAAAAAGGAAATT
GTTTCAACACACAGCCGCCCGAAGGCGGCTG

Protein	Signature genes	Signature genes Name	Protein_function
LR134313.1\|VEF03418.1\|2425979_2426618_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|373093
LR134313.1\|VEF03425.1\|2430389_2431112_-\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
LR134313.1\|VEF03398.1\|2413805_2414162_+\|endoribonuclease-L-PSP	unknown	unknown	gnl\|CDD\|100007
LR134313.1\|VEF03404.1\|2416667_2417084_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134313.1\|VEF03416.1\|2424922_2425966_-\|RNase-III-inhibitor	unknown	unknown	gnl\|CDD\|394873
LR134313.1\|VEF03421.1\|2427446_2428289_-\|phage-associated-protein	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
LR134313.1\|VEF03423.1\|2428308_2430393_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
LR134313.1\|VEF03392.1\|2411681_2412557_-\|membrane-protein	unknown	unknown	unknown
LR134313.1\|VEF03429.1\|2433612_2433777_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134313.1\|VEF03400.1\|2414236_2414848_-\|Glutathione-S-transferase	unknown	unknown	gnl\|CDD\|223698
LR134313.1\|VEF03427.1\|2431121_2433620_-\|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134313.1\|VEF03406.1\|2417387_2418071_-\|Respiratory-nitrate-reductase-1-gamma-chain	unknown	unknown	gnl\|CDD\|376889
LR134313.1\|VEF03412.1\|2423409_2423697_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LR134313.1\|VEF03394.1\|2412805_2413219_-\|dnaJ-family-protein	unknown	unknown	gnl\|CDD\|226197
LR134313.1\|VEF03414.1\|2423781_2424795_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
LR134313.1\|VEF03402.1\|2415241_2416228_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273137
LR134313.1\|VEF03420.1\|2426697_2427303_-\|recombinase-B	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
LR134313.1\|VEF03410.1\|2418741_2420301_-\|Respiratory-nitrate-reductase-2-beta-chain	unknown	unknown	gnl\|CDD\|224063
LR134313.1\|VEF03396.1\|2413246_2413729_-\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|272853
LR134313.1\|VEF03408.1\|2418073_2418742_-\|Redox-enzyme-maturation-protein-NarJ	unknown	unknown	gnl\|CDD\|225091

Protein	Function_ID	Function_description	E-value
LR134313.1\|VEF03418.1\|2425979_2426618_-\|Uncharacterised-protein	gnl\|CDD\|373093	pfam14487, DUF4433, Domain of unknown function (DUF4433). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 201 and 230 amino acids in length. There is a single completely conserved residue E that may be functionally important. This family is distantly similar to pfam01885 suggesting these may be ADP-ribosylases.	5.53957e-74
LR134313.1\|VEF03425.1\|2430389_2431112_-\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.74415e-93
LR134313.1\|VEF03398.1\|2413805_2414162_+\|endoribonuclease-L-PSP	gnl\|CDD\|100007	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	1.44469e-49
LR134313.1\|VEF03420.1\|2426697_2427303_-\|recombinase-B	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	3.71409e-43
LR134313.1\|VEF03421.1\|2427446_2428289_-\|phage-associated-protein	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.87391e-113
LR134313.1\|VEF03423.1\|2428308_2430393_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	9.74236e-164
LR134313.1\|VEF03416.1\|2424922_2425966_-\|RNase-III-inhibitor	gnl\|CDD\|394873	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.	7.39135e-38
LR134313.1\|VEF03427.1\|2431121_2433620_-\|helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.06679e-52
LR134313.1\|VEF03406.1\|2417387_2418071_-\|Respiratory-nitrate-reductase-1-gamma-chain	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	3.80191e-96
LR134313.1\|VEF03412.1\|2423409_2423697_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.12143e-31
LR134313.1\|VEF03394.1\|2412805_2413219_-\|dnaJ-family-protein	gnl\|CDD\|226197	COG3671, COG3671, Predicted membrane protein [Function unknown].	2.3009e-17
LR134313.1\|VEF03414.1\|2423781_2424795_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
LR134313.1\|VEF03402.1\|2415241_2416228_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	gnl\|CDD\|273137	TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	7.2245e-168
LR134313.1\|VEF03410.1\|2418741_2420301_-\|Respiratory-nitrate-reductase-2-beta-chain	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
LR134313.1\|VEF03400.1\|2414236_2414848_-\|Glutathione-S-transferase	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	3.20793e-36
LR134313.1\|VEF03396.1\|2413246_2413729_-\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	gnl\|CDD\|272853	TIGR00011, Putative_Cys-tRNAPro/Cys-tRNACys_deacylase_EbsC, Cys-tRNA(Pro) deacylase. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434) likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism. [Protein synthesis, tRNA aminoacylation].	2.20243e-55
LR134313.1\|VEF03408.1\|2418073_2418742_-\|Redox-enzyme-maturation-protein-NarJ	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	1.47625e-47

>LR134313.1|VEF03410.1|2418741_2420301_-|Respiratory-nitrate-reductase-2-beta-chain
MKIRAQVGMVLNLDKCIGCHTCSVTCKNVWTSRDGVEYAWFNNVETKPGIGFPKNWEDQNKWNGGWVRKPDGKLVPKQGGKLKILANIFANPNMPKIDDYYEPFTYDYEHLQNAPKMKTPPTARPISVLTGKKMDKVEWGPNWEDDLAGEFEKRAKDVLFEGIQKDMHAAFEQTFMMYLPRLCEHCLNPTCVASCPSGSIYKREDDGIVLIDQDKCRGWRMCVSGCPYKKIYYNWTSGKAEKCTFCYPRIEGGQPTVCSETCVGRIRYLGVLLYDADKIEQAASVANPQDLYEQQLGVFLNPHDPEIQREALKQGISQSWIDAAKQSPVYKMAMEWKVAFPLHPEYRTLPMVWYIPPLSPIQSAIENGLVGENGIIPSVDEMRIPLKYLANLLTAGKVEPIKFALERMIAMRRFKRGQVVHGETLAQTLEGTGLTPEMVEDMYQIMAIANYEDRFVIPTSHKEMVENSFGDKAGCGFTFGNGCSGGSSEESLFGKRKGAPIIFHGLRKDAEKNREEGVR
>LR134313.1|VEF03408.1|2418073_2418742_-|Redox-enzyme-maturation-protein-NarJ
MSANPVYKWFSALLCYPEAELIEALSEFQTALQEWPELQTQAGRLNSFLDYLNSHSLRELQENYVATFDRNRNHALYIFEHVYGEDRDRGSAMVDLLQEYRNHGFELGNDELPDYLPVLLEYLSQVAPEHAQKLLGDAVHVIAHIGGKLEKNGSPYAVLLQGITALSPVAPQPLIEPPVRDMDEAMETFGPDISGTEPLLKPSVETVQFYPKAAFQTAQTGA
>LR134313.1|VEF03406.1|2417387_2418071_-|Respiratory-nitrate-reductase-1-gamma-chain
MNTLHQFFFGIFPYIALAIFFFGSLVRFDREQYSWKSESSQILYEGQLRVGNILFHVGILAVFFGHLFGLLTPLWFWDALGISHGAKQIFAMVMGGIFGVMAMIGLIILLQRRLKCDRLAVNSTWRDKLVLIWLIITLGLGLLTIFVSMGHTDGHEMVKLMTWAQHIVTFRGDAAGHIEDVNFLFKLHMVMGMGLFVIFPFTRLVHVWSGFASVAYLGRAWQLVRRR
>LR134313.1|VEF03404.1|2416667_2417084_+|Uncharacterised-protein
MNILGWEYRKTDGRYWWLLGILALVGGMVGMLPVIVALSFNPGVQAARNPDMLLNLALMGWRFGFLPSVLTWAVWFIMDLKRGVFGTLVTIATAASTSLLTGWLIYELSFTQGLLAGLCGAFAGWAFSLCLPESRKRD
>LR134313.1|VEF03402.1|2415241_2416228_+|4-hydroxythreonine-4-phosphate-dehydrogenase
MQPTLAITSGEPAGIGPDICLDLAHASLPCRAVVLGDINLLRQRAQMLGKSIEIKPYDLQGLSEKGVLEVWHIPLNAACEAGKLNVANASYVLDLLDTAYEGIERKQFAGMVTAPLHKGIINDAGGPFFSGHTEYLAEKSEAKQVVMMLAGGGLRVALVTTHLPLKDVAAAISRPLLHDIVRVLHHDLKHKFGIESPNILAAGLNPHAGEGGHLGREEIDVIIPAFKALQAEGINICGPYPADTLFQPFMLEHADAVLAMYHDQGLPVLKYAGFGNSVNITLGLPFIRTSVDHGTALELAGTGKARSGSLIAAVHTAYEMATAQNSYL
>LR134313.1|VEF03400.1|2414236_2414848_-|Glutathione-S-transferase
MKLSFYTHPMSRGRIVRWMLEETGLPYETLLLEYGGSMKSPEYRAINPMGKVPALKHGDTVVTETAAICMYLADLVPEKQLAPPPGSPERGTYYRWISFMAPLEQLMFAKRGAAMPPPESAGFGTEADLLDALESALKNREYLAGGTFTAADLMVAAYVGWYLQFKLLEPRPAFVAFAERHRKRPAALRADEIDEGLLAQQGE
>LR134313.1|VEF03398.1|2413805_2414162_+|endoribonuclease-L-PSP
MTIQYFGQTPRLSEATVANGFVFLAGMVPENTEAGATEQTRNVLEQIDHWLAQCGSDKNHILEATIFLPDLADYDAVNIAWDAWVNPQRAPARACVEAKLAKQEWKVEIKVSAVQIQK
>LR134313.1|VEF03396.1|2413246_2413729_-|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein
MAKPDYPITPAVRFLREHNIHFEPKLYDYVEHGGTSHSAACLGVAEHEVVKTIVLQNEAKKGLIVLMHGDKQISTRNLARALGMKHIEPADPKQVNKWTGFLVGGTSPFGTKTALPVYVEESIWALEKMYINGGKRGFLVAVSPRALMSLNTVSVNVAVD
>LR134313.1|VEF03394.1|2412805_2413219_-|dnaJ-family-protein
MIETPISKQEKTERGRICGNLPIPASSDEAYKYTWIVYILYFLSFPVSVISIAGVVIAYLKRDETAGTVCYGHMQYLIKTFWVVLAGKLIGICLIGSLFVISGLLVLCIVWIWFIYRVVAGFIKFNENQQVSVKSWF
>LR134313.1|VEF03392.1|2411681_2412557_-|membrane-protein
MVFLISSIVCSVAVSVLLKMARSKKIDIEQAVAVNYLVAIALCMVFLKPDLGAWRSFLPTWWVFGALGVLLPSVFVVMGRSVERAGIVRSDAAQRLSLFLPVGASFLIFGETLTQGRAVGLALAFTALFCLLWKSGGGKKSGGLLANAGLLLGVWAGYGVIDILFKQVAKSGTAFSGNLLVAFCLAGMLMFGYLFAKGVKWTAAGILGGMILGVLNFANIFTYVRAHQVMSESPTLVFAGMNIGVIVLGTLVGALAFKEKISSINAAGIAVAVCAIGCLFYWPQISALLGL
>LR134313.1|VEF03412.1|2423409_2423697_-|CRISPR-associated-endoribonuclease-Cas2
MLITYDISLEDAAGQARLRRIAKHCLDYGVRVQYSVFECDVTPDQWVKLKAKLLDTYQPETDSLRFYHLGSKWRRKVEHHGAKAAVDVFQDTLIV
>LR134313.1|VEF03414.1|2423781_2424795_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG
MRKLQNTLYITTQGSYLHKERETLVVEQERKKVAQLPVHAIGHIFCFGNVLVSPFLMGFCGENNVNLAFFTENGRFLGRLQGRQSGNVLLRRAQYRLSEQNPVPIARHVIAAKIQSAKRVLQRRLRNHGEHAEVLAAVTALNFSLQQLKRAECLDKVRGIEGDAAARYFGVFRHLLAEKSGFDFDGRNRRPPRDGVNALLSFLYAVLGKDISGALQGVGLDPQVGFLHADRPGRDSLAQDILEEFRAWWVDRLVLSLINRGQIKPQDFVHEAGGAVNIKPEARKLVFQALQAKKQEKIIHPFLQEEVEIGLLPYIQAMLLARHLRGDLAEYPPFLMR
>LR134313.1|VEF03416.1|2424922_2425966_-|RNase-III-inhibitor
MIEFKTGNIFESDAEALVNTVNCVGVMGRGIALQFKNKYPENFKAYQQACKQEFLKPGKMFVFETEQLVLPKWIINFPTKRHWRGKSRIEDIEIGLIDLVKVIQEKNIQSIAIPPLGSGLGGLDWNDVRSQIENTLSHVENVKIFVYEPGGAPETTKMNHSTKVPEMTAGRAALIELMNRYLKGLLDPYISLLEVHKLMYFMQESGENLRLKYVKHHYGPYAENLRHVLKAIEGHFISGYADGGDMPNKPLKLVPGAIEDAQQFLSKHVNSYAHFEKVTELVEGFESSYGLELLATVHWLAKKDGIMDKEDLRRGVYQWNEHKKSFTPRQIDIAYDRLLYQGWLVQN
>LR134313.1|VEF03418.1|2425979_2426618_-|Uncharacterised-protein
MPIKIYHIVHLDRLGSILADGYLLSDAIISQRGNNGSMIGLSNIKERRLRKSLNSYPNLHVGDCVPFYFCPRSVMLFLIYCRNSELAYQGGQEPIIHLQADLEQVVQWAKTQSPRQRWVFTDSNAGSNYFEDFNDLNLLNDKINWDAVGARYWQEPSIKEGKQAEFLFENALPWHLIEHIGVHSNRIYRQVVHVLQGQQHRPQVTVEPTWYY
>LR134313.1|VEF03420.1|2426697_2427303_-|recombinase-B
MTNIPLSALQHYAFCPRQCALIHNEQVWAENYLTAQGRALHERVDGGEPETRKGVRFERSVHVSAENLGVHGVLDMVERDIQTGHLKPVEYKRGKPKPEPFDEIQLCAQALCLEEMTGQTVAEGALWYMQTRHRVPVMFSGSLRAQTLQVIDEVRKLLESGTTPPPEYGKRCKACSLIEVCQPKLVDRDRSVGYVAGLFGD
>LR134313.1|VEF03421.1|2427446_2428289_-|phage-associated-protein
MSLSKKIDFALIISVQNANPNGDPLNGNRPRADFSGFGEMTDVCLKRKIRDRLQDCGESIFVQSDEKKTDGMTSLANRAKDKEVGLGADAFNAKKANKDETAKKACEKWLDVRSFGQVFAFGKSDDASGVSIAVRGPVTIQSAFSVDPVSITSTQITKSVSGEGDGSKRGSDTMGMKHRVDKGIYVAYGAMSPQLAERTGFSDADAQKIKTVLTKLFEGDASSARPEGSMQVLKLIWWEHNCKSGQYSSAKVHGSLKVHSDGSYDLDNFEDLQPEVLDGF
>LR134313.1|VEF03423.1|2428308_2430393_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG
MSWMQKLYRTYEAAEKNPDLLDLDKLAPLWHSPQTAHIQINLDEAGNFLSAKVLTDKPIVMLPVTESSEGRTSGLAPHALADSLQYIARDLGLTYSKEEIQEIEGKNGKKKKVKIKKEDLIFNLYIEQLDKWCLDTFNPKVLAIQKYLHKGTVLEDLIKEKIIPTDENGNLLDNWIEKENEGRKKPELFNVLTKEQGKYEIRKALVIWSVEIPKHLVSATWEDKSVQQDWGRYYQSTLDSQFCIITGNEEKIRESHPAKLTYTGDKAKLVSSNDKEGYTYRGRFETANQASSISAEISHKSHAALRWLIARQGIRNGDQVTVAWALSGKEVLPPLKDTFYEIDWDNLDTGAVEVQEESVIPSVVEDNGVDWSVNIGRQAAQILKQKLHGMKKELKEHEQISLLMLDSATPGRMALTYYQEFLPIDYFANLDTWVDDFSWYQRHSIEQKQGKKAQKQTVWAVLPPSPMAIGEAVYGAALNDTLKKQLYARLLPVIAGGQAVPIPDDLVRKSFQTACNPNGCEHWEWERNIGVACALYKGWRARHYDSSQKRTYSMDLDIENRSRDYLFGRLLAVAEKLESTALRIADEDRATTAERYMQRFVVRPLSTWLQIEANLTKSYKDRLRNNRYMGFLRNREKEIDEIMFALNELRDKTGCSLDAQLDGEFLLGYHSQKMAYRNQSNAQAQPDTQETENN
>LR134313.1|VEF03425.1|2430389_2431112_-|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG
MNNQISFRVWGRQALFTDPVTKIGGEKFSYQVPTYEAIKGIVKSIYWKPTLIWHIDRIRVMKPIRTQSKSTKPLDWNGGNTLAIYTFLQDVEYQVEAHFEWNENWEELKADRVAGKHMAIAKRMLERGGRQDIFLGTRDCQGYVDPCEFGSGEGFYDDIDNLDFGLMFHSFGYPEETGNHELVSRFWQANMQHGIITFPRVNDDTGRLKTRLIREMKPEKPFKRGENLKAVEEEAKELGL
>LR134313.1|VEF03427.1|2431121_2433620_-|helicase-Cas3
MAEHFIAHVRRSDNTPQSVATHLTETAAIAKLLAAKLGLDLAGELLGLMHDFGKYSEAFQEYIKAVTGFDPDTDLDDILPGGGKIDHSTAGAQWVYRRLKKFGAVKGSPGKTNGMGELCGQMLGLCIASHHGAGLIDCLSPENGETVWVKRFDKDDAETHLSECEQNADAAVKEQAECLASEALIKQIITVLRPAIEPMSVSFQQERATGEIRTPHKIEEFYLGCFTRFLFSCLIDADRINSADFERENQKSLRRLTQKTDWQDAIDKLEAHLSQFEIRYPIDQIRRNISDACLNRAEDAQGIYTLTVPTGGGKTLASLRYALHHAKKHDLDRIIYIIPYTSIIDQNAQAVREILGDEWVLEHHSNLDPEQQTWQNKLLSENWDKPIVFTTMVQFLDAWFGGGTRGARHIHPMTRSVLIFDEIQTLPVKCVHLFCNVLNWLTQYGKSSAVLCTATQPLLDKLPKSELGELKLAENSEIMGDEQAKNQLFAELSRVEIEFKSKSGGWSVQDAGRFLLEQFQTASSCLFIVNTKRWAQQLYQYCQEQNVPQEALFHLSTNQCAEHRRAIFSVIKGRLKKGEPVLCISTQLIEAGVDISMACVIRALGGLDSIAQAAGRCNRHGEKAGKGKVYVLNLQEPNFEKVLPDIAIGQSNAERVLREFKGQDILQPAAMHQYFEYYFYKRSSEMVYPAPQSTSGSLLDWLSDNRLNAYAAKNNRRNKPFPLLMQSFKSAGQAFQVIDAPTRAVIVPYAAGRDLIAKLCGEWNPQEKYELLAQAQRYSVNVFPNVWRKLEEQQAVQEVLAGTGIYYLNERYYNDEYGLSADETSEMVFYDL
>LR134313.1|VEF03429.1|2433612_2433777_-|Uncharacterised-protein
MMEKTKTYYAHSAENRPEQKRQTLQSLFSKYEKMASRFAAFLCKFNVTRKKMNG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134313_2	2.6\|2421181\|34\|LR134313\|CRT,PILER-CR,CRISPRCasFinder	2421181-2421214	34	LR134313.1	761552-761585	0	1.0

1. spacer 2.6|2421181|34|LR134313|CRT,PILER-CR,CRISPRCasFinder matches to position: 761552-761585, mismatch: 0, identity: 1.0

atcggctactgtaaacaatattgcttacggtaac	CRISPR spacer
atcggctactgtaaacaatattgcttacggtaac	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134313_2	2.32\|2422890\|34\|LR134313\|CRT,PILER-CR,CRISPRCasFinder	2422890-2422923	34	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	118899-118932	7	0.794
LR134313_2	2.23\|2422297\|34\|LR134313\|CRT,PILER-CR,CRISPRCasFinder	2422297-2422330	34	NZ_CP011450	Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence	330888-330921	8	0.765
LR134313_2	2.30\|2422759\|33\|LR134313\|CRT,PILER-CR,CRISPRCasFinder	2422759-2422791	33	NC_014035	Rhodobacter capsulatus SB 1003 plasmid pRCB133, complete sequence	19149-19181	8	0.758
LR134313_2	2.15\|2421776\|34\|LR134313\|CRT,PILER-CR,CRISPRCasFinder	2421776-2421809	34	NZ_CP028345	Vibrio parahaemolyticus isolate R13 plasmid pVpR13_55Kb, complete sequence	23383-23416	9	0.735
LR134313_2	2.15\|2421776\|34\|LR134313\|CRT,PILER-CR,CRISPRCasFinder	2421776-2421809	34	NZ_CP034303	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-4, complete sequence	62632-62665	9	0.735
LR134313_2	2.15\|2421776\|34\|LR134313\|CRT,PILER-CR,CRISPRCasFinder	2421776-2421809	34	NZ_CP028144	Vibrio parahaemolyticus strain R14 plasmid pVpR14_56Kb, complete sequence	1505-1538	9	0.735
LR134313_2	2.20\|2422102\|34\|LR134313\|CRT,PILER-CR,CRISPRCasFinder	2422102-2422135	34	MK893987	Staphylococcus phage PMBT8, complete genome	34926-34959	9	0.735
LR134313_2	2.10\|2421449\|34\|LR134313\|CRT,PILER-CR,CRISPRCasFinder	2421449-2421482	34	NC_019401	Cronobacter phage vB_CsaM_GAP32, complete genome	334020-334053	10	0.706
LR134313_2	2.23\|2422297\|34\|LR134313\|CRT,PILER-CR,CRISPRCasFinder	2422297-2422330	34	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1985802-1985835	10	0.706
LR134313_2	2.30\|2422759\|33\|LR134313\|CRT,PILER-CR,CRISPRCasFinder	2422759-2422791	33	NC_018582	Gordonia sp. KTR9 plasmid pGKT1, complete sequence	78249-78281	10	0.697

1. spacer 2.32|2422890|34|LR134313|CRT,PILER-CR,CRISPRCasFinder matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 7, identity: 0.794

taaagccgctgccgcggccaaatccgca--caatct	CRISPR spacer
tcacgccgctcccgccgccaaatccgcaaccaag--	Protospacer
* * ****** **** ************  ***

2. spacer 2.23|2422297|34|LR134313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP011450 (Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence) position: , mismatch: 8, identity: 0.765

acgcccgcgcgtttcgcatgagcggcaatatcgc	CRISPR spacer
aggcgctgccgtttcgcgtgcgcggcaatatcgg	Protospacer
* ** *   ********.** ************

3. spacer 2.30|2422759|33|LR134313|CRT,PILER-CR,CRISPRCasFinder matches to NC_014035 (Rhodobacter capsulatus SB 1003 plasmid pRCB133, complete sequence) position: , mismatch: 8, identity: 0.758

ccttgataccgcgccccttgcggcggcctttgt	CRISPR spacer
gcaggaggccgcggcctttgcggcggcctttgc	Protospacer
 *  ** .***** **.***************.

4. spacer 2.15|2421776|34|LR134313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP028345 (Vibrio parahaemolyticus isolate R13 plasmid pVpR13_55Kb, complete sequence) position: , mismatch: 9, identity: 0.735

tagcaaaggatggtttgttgaaatctgggaagta	CRISPR spacer
taaagaaggatggtttgtagaaatcttggcaaag	Protospacer
**. .************* ******* ** *. .

5. spacer 2.15|2421776|34|LR134313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034303 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-4, complete sequence) position: , mismatch: 9, identity: 0.735

tagcaaaggatggtttgttgaaatctgggaagta	CRISPR spacer
taaagaaggatggtttgtagaaatcttggcaaag	Protospacer
**. .************* ******* ** *. .

6. spacer 2.15|2421776|34|LR134313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP028144 (Vibrio parahaemolyticus strain R14 plasmid pVpR14_56Kb, complete sequence) position: , mismatch: 9, identity: 0.735

tagcaaaggatggtttgttgaaatctgggaagta	CRISPR spacer
taaagaaggatggtttgtagaaatcttggcaaag	Protospacer
**. .************* ******* ** *. .

7. spacer 2.20|2422102|34|LR134313|CRT,PILER-CR,CRISPRCasFinder matches to MK893987 (Staphylococcus phage PMBT8, complete genome) position: , mismatch: 9, identity: 0.735

cccccccaaaaatccatagaaatatggattggta	CRISPR spacer
tgctatcaaaaatccaaagcaatatggatttgga	Protospacer
. *. .********** ** ********** * *

8. spacer 2.10|2421449|34|LR134313|CRT,PILER-CR,CRISPRCasFinder matches to NC_019401 (Cronobacter phage vB_CsaM_GAP32, complete genome) position: , mismatch: 10, identity: 0.706

ttgtatagttgatacatgtttttttctccaatgg	CRISPR spacer
aagtcacgttgagacatgtttttttctgcaacta	Protospacer
  **   ***** ************** ***. .

9. spacer 2.23|2422297|34|LR134313|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 10, identity: 0.706

acgcccgc-----gcgtttcgcatgagcggcaatatcgc	CRISPR spacer
-----cgtggggagcgttcggcatgagcggcaatatcca	Protospacer
     **.     *****. *****************

10. spacer 2.30|2422759|33|LR134313|CRT,PILER-CR,CRISPRCasFinder matches to NC_018582 (Gordonia sp. KTR9 plasmid pGKT1, complete sequence) position: , mismatch: 10, identity: 0.697

ccttgataccgcgccccttgcggcggcctttgt	CRISPR spacer
ggctgatacggcgcctcttgcggcggcgagggg	Protospacer
  .****** *****.***********    *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5499 : 49653

Staphylococcus_phage(22.22%)

tRNA,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE98776.1\|5499_6798_+\|tRNA	tyrosyl-tRNA synthetase	A0A1L2CUL7	Pectobacterium_phage	8.1e-85	43.4
VEE98778.1\|7628_7745_+	Uncharacterised protein	NA	NA	NA	NA
VEE98780.1\|7745_8027_-	Uncharacterised protein	NA	NA	NA	NA
VEE98782.1\|8319_8712_+	Transferrin binding protein-like solute binding protein	NA	NA	NA	NA
VEE98784.1\|9415_10831_+	outer membrane protein OmpU	NA	NA	NA	NA
VEE98786.1\|11342_11825_-	Uncharacterised protein	NA	NA	NA	NA
VEE98788.1\|11866_12427_-\|transposase	insertion element IS1016 transposase	NA	NA	NA	NA
VEE98790.1\|12931_13492_+\|transposase	insertion element IS1016 transposase	NA	NA	NA	NA
VEE98792.1\|13577_14243_-	ribose-5-phosphate isomerase A	NA	NA	NA	NA
VEE98794.1\|14275_14755_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
VEE98796.1\|14833_15517_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
VEE98798.1\|15513_16239_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.8e-33	36.2
VEE98800.1\|16511_16970_+	putative lipoprotein	NA	NA	NA	NA
VEE98802.1\|17122_17590_-	putative universal stress protein	NA	NA	NA	NA
VEE98804.1\|17732_18521_+	HesA/MoeB/ThiF family protein	NA	NA	NA	NA
VEE98806.1\|18539_19229_+	Uncharacterised protein	NA	NA	NA	NA
VEE98808.1\|19254_20103_+	segregation and condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.3e-10	27.0
VEE98810.1\|20213_21425_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	1.9e-43	32.8
VEE98812.1\|21564_22617_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
VEE98814.1\|22716_23277_-\|transposase	insertion element IS1016 transposase	NA	NA	NA	NA
VEE98816.1\|23586_25659_+	protein CstA	NA	NA	NA	NA
VEE98818.1\|25660_25861_+	Uncharacterized small protein	NA	NA	NA	NA
VEE98820.1\|25977_26286_+\|transposase	transposase	NA	NA	NA	NA
VEE98822.1\|26371_26782_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
VEE98824.1\|27539_28055_+\|protease	putative metalloprotease NMB0538	NA	NA	NA	NA
VEE98826.1\|28056_28887_+	Magnesium and cobalt transporter	NA	NA	NA	NA
VEE98828.1\|28926_29889_+	Uncharacterised protein	NA	NA	NA	NA
VEE98830.1\|30059_30692_-	Uncharacterised protein	NA	NA	NA	NA
VEE98832.1\|30860_31739_+	Inner membrane protein yedI	NA	NA	NA	NA
VEE98834.1\|31845_33390_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
VEE98836.1\|33644_34511_+	RNA polymerase factor sigma-32	A0A248SJA5	Salicola_phage	2.3e-43	40.7
VEE98838.1\|34661_35588_-	outer membrane lipoprotein GNA1946	NA	NA	NA	NA
VEE98840.1\|35716_36403_-	ABC transporter permease	NA	NA	NA	NA
VEE98842.1\|36405_37146_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-32	40.1
VEE98844.1\|37472_38390_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
VEE98846.1\|38402_39278_-	membrane protein	NA	NA	NA	NA
VEE98848.1\|39336_40062_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-10	22.9
VEE98850.1\|40464_40611_-	putative phage associated protein	NA	NA	NA	NA
VEE98852.1\|40638_40974_+\|transposase	transposase, IS30 family	NA	NA	NA	NA
VEE98854.1\|41197_41593_+\|transposase	transposase for IS1655	W5R8L2	Staphylococcus_phage	8.3e-17	42.0
VEE98856.1\|41932_42094_+	Uncharacterised protein	NA	NA	NA	NA
VEE98858.1\|42806_43316_-	Integrase core domain	NA	NA	NA	NA
VEE98860.1\|43916_44279_-	roadblock/LC7 domain protein	NA	NA	NA	NA
VEE98862.1\|44387_45017_-	Uncharacterised protein	NA	NA	NA	NA
VEE98864.1\|45019_45556_-	ATP-binding protein	NA	NA	NA	NA
VEE98866.1\|45567_46683_-	Uncharacterised protein	NA	NA	NA	NA
VEE98868.1\|46700_48143_-	Uncharacterised protein	NA	NA	NA	NA
VEE98870.1\|48306_49653_-\|tRNA	tRNA methyltransferase	A0A2K5B251	Erysipelothrix_phage	2.2e-37	26.5

DBSCAN-SWA_2

104190 : 151748

Staphylococcus_prophage(14.29%)

transposase,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE98976.1\|104190_105468_-\|bacteriocin	putative bacteriocin/pheromone secretion membrane fusion protein	NA	NA	NA	NA
VEE98978.1\|105675_105846_-	Uncharacterised protein	NA	NA	NA	NA
VEE98980.1\|105862_105997_-	Uncharacterised protein	NA	NA	NA	NA
VEE98981.1\|106027_106204_-	Uncharacterised protein	NA	NA	NA	NA
VEE98983.1\|106244_106436_-	Uncharacterised protein	NA	NA	NA	NA
VEE98985.1\|106927_107074_-	Uncharacterised protein	NA	NA	NA	NA
VEE98987.1\|107738_107933_-	Uncharacterised protein	NA	NA	NA	NA
VEE98989.1\|107990_108158_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
VEE98991.1\|108238_108376_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
VEE98993.1\|108781_110098_+	periplasmic type I secretion system protein	NA	NA	NA	NA
VEE98995.1\|110283_112986_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
VEE98997.1\|113150_114128_+\|transposase	transposase for IS1655	Q9MBM9	Staphylococcus_prophage	6.4e-34	34.5
VEE98999.1\|114676_115015_+	Uncharacterised protein	NA	NA	NA	NA
VEE99001.1\|115134_116904_-	Serralysin precursor	NA	NA	NA	NA
VEE99004.1\|117275_118151_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA
VEE99006.1\|118381_119551_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	1.0e-126	62.4
VEE99009.1\|119645_119984_-	Uncharacterised protein	A0A1V0SED0	Indivirus	2.5e-06	43.1
VEE99011.1\|120100_121018_-	1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA	NA	NA	NA
VEE99013.1\|121074_123954_-	ribonuclease E	NA	NA	NA	NA
VEE99015.1\|124591_125578_+	protein RluC	NA	NA	NA	NA
VEE99017.1\|126080_126980_+	phosphatase	NA	NA	NA	NA
VEE99019.1\|127073_128069_+\|protease	protease	NA	NA	NA	NA
VEE99021.1\|128166_128760_-	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	1.9e-25	41.8
VEE99023.1\|128956_129676_+	uridylate kinase	NA	NA	NA	NA
VEE99025.1\|129891_130872_+	Uncharacterised protein	NA	NA	NA	NA
VEE99027.1\|131008_131566_+	ribosome recycling factor	NA	NA	NA	NA
VEE99029.1\|131617_132364_+	undecaprenyl diphosphate synthase	R9W0U9	Flavobacterium_phage	8.4e-18	39.3
VEE99031.1\|132367_133162_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
VEE99033.1\|133270_134455_+	1-deoxy-D-xylulose 5-phosphate reductoisomerase	NA	NA	NA	NA
VEE99035.1\|134464_135808_+	integral membrane protein	NA	NA	NA	NA
VEE99037.1\|135813_138228_+	Outer-membrane protein assembly factor Omp85	NA	NA	NA	NA
VEE99039.1\|138268_138775_+	Outer membrane protein OmpH, putative	NA	NA	NA	NA
VEE99041.1\|138880_139921_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA
VEE99043.1\|139969_140428_+	(3R)-hydroxymyristoyl-ACP dehydratase	NA	NA	NA	NA
VEE99045.1\|140489_141266_+	UDP-N-acetylglucosamine acyltransferase	NA	NA	NA	NA
VEE99047.1\|141575_142226_+	pilin glycosylation protein PglB	NA	NA	NA	NA
VEE99049.1\|142293_143448_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
VEE99051.1\|143671_144088_+	PTS system, IIAB component	NA	NA	NA	NA
VEE99053.1\|144084_144354_+	protein PtsH	NA	NA	NA	NA
VEE99055.1\|144355_146110_+	phosphoenolpyruvate-protein phosphotransferase	A0A1V0SGR7	Hokovirus	4.4e-09	25.1
VEE99057.1\|146187_147225_-	Lipopolysaccharide core heptosyltransferase rfaQ	NA	NA	NA	NA
VEE99059.1\|147389_150074_+	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase	NA	NA	NA	NA
VEE99061.1\|150166_150424_+	Uncharacterised protein	NA	NA	NA	NA
VEE99063.1\|150690_151296_+	RegF	NA	NA	NA	NA
VEE99065.1\|151346_151748_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	5.3e-19	41.2

DBSCAN-SWA_3

1566076 : 1577012

Tupanvirus(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF01826.1\|1566076_1568233_-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2K9L285	Tupanvirus	6.4e-10	34.6
VEF01828.1\|1568245_1568452_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
VEF01830.1\|1568523_1569141_-	guanylate kinase	A0A223FNL1	NY_014_poxvirus	1.3e-16	29.7
VEF01832.1\|1569262_1569826_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	8.2e-34	46.1
VEF01834.1\|1569902_1570847_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
VEF01836.1\|1571172_1572450_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	6.0e-125	54.0
VEF01838.1\|1572524_1572995_-	pilin	NA	NA	NA	NA
VEF01840.1\|1573073_1573505_-	type IV pilin protein	NA	NA	NA	NA
VEF01842.1\|1573865_1575053_+	ABC transporter periplasmic protein	A0A140XAI1	Dickeya_phage	3.4e-05	48.1
VEF01844.1\|1575071_1577012_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.2e-37	40.9

DBSCAN-SWA_4

1697034 : 1760140

Moraxella_phage(13.33%)

tRNA,integrase,protease,transposase

attL 1754202:1754223|attR 1765846:1765867

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF02068.1\|1697034_1698330_+\|tRNA	histidyl-tRNA synthetase	NA	NA	NA	NA
VEF02070.1\|1698331_1698961_+	membrane protein	NA	NA	NA	NA
VEF02072.1\|1699078_1700539_+	GTP-binding protein EngA	NA	NA	NA	NA
VEF02074.1\|1700734_1701019_+	regulator	NA	NA	NA	NA
VEF02076.1\|1701296_1703576_+	ribonucleotide-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	3.5e-285	64.5
VEF02078.1\|1703721_1704888_-	ABC-2 family transporter protein	NA	NA	NA	NA
VEF02080.1\|1704903_1706247_-	putative sodium dependent ion transport protein	NA	NA	NA	NA
VEF02082.1\|1706408_1707647_-	Inner membrane transport permease ybhR	NA	NA	NA	NA
VEF02084.1\|1707967_1708066_+	Uncharacterised protein	NA	NA	NA	NA
VEF02086.1\|1708049_1708733_+	Uncharacterised protein	NA	NA	NA	NA
VEF02088.1\|1708798_1710826_-	TPR repeat protein	NA	NA	NA	NA
VEF02090.1\|1710972_1712538_-	GMP synthase	A0A1V0SH76	Hokovirus	5.3e-22	32.3
VEF02092.1\|1712639_1712981_-	Uncharacterised protein	NA	NA	NA	NA
VEF02094.1\|1713184_1713652_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	8.0e-27	47.9
VEF02096.1\|1713688_1713928_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEF02098.1\|1713899_1714109_-	Uncharacterised protein	NA	NA	NA	NA
VEF02100.1\|1714641_1714956_+\|protease	ATP-dependent Clp protease adaptor protein ClpS	NA	NA	NA	NA
VEF02102.1\|1714956_1717236_+\|protease	ATP-dependent protease ATP-binding protein	A0A223W0B1	Agrobacterium_phage	3.5e-168	43.4
VEF02104.1\|1717365_1718349_-\|transposase	transposase for IS1655	Q9MBM9	Staphylococcus_prophage	1.6e-32	32.5
VEF02106.1\|1718728_1718998_-	DNA-binding protein Hu	A3E2K9	Sodalis_phage	3.8e-21	60.7
VEF02108.1\|1719214_1721668_-\|protease	ATP-dependent Lon protease	A0A0R6PGP8	Moraxella_phage	3.9e-221	51.5
VEF02110.1\|1721943_1722213_+	Uncharacterized conserved protein	NA	NA	NA	NA
VEF02112.1\|1722215_1722821_+	lipoate-protein ligase B	NA	NA	NA	NA
VEF02114.1\|1722931_1723906_+	lipoyl synthase	NA	NA	NA	NA
VEF02116.1\|1724086_1724473_+	30S ribosomal protein S6	NA	NA	NA	NA
VEF02118.1\|1724778_1725009_+	30S ribosomal protein S18	NA	NA	NA	NA
VEF02120.1\|1725026_1725479_+	50S ribosomal protein L9	NA	NA	NA	NA
VEF02122.1\|1725981_1726860_-	Uncharacterised protein	NA	NA	NA	NA
VEF02124.1\|1727005_1727512_-	Glucan endo-1,3-beta-glucosidase precursor	NA	NA	NA	NA
VEF02126.1\|1727675_1729130_-\|protease	carboxy-terminal processing protease	A0A0R6PIZ1	Moraxella_phage	1.2e-25	28.5
VEF02128.1\|1729246_1730503_-	putative metallopeptidase	NA	NA	NA	NA
VEF02130.1\|1730629_1731190_+	Uncharacterized ACR, COG1678	NA	NA	NA	NA
VEF02132.1\|1731182_1731665_+	Holliday junction resolvase-like protein	NA	NA	NA	NA
VEF02134.1\|1731754_1732168_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEF02136.1\|1732291_1733182_+	acetylglutamate kinase	NA	NA	NA	NA
VEF02138.1\|1733266_1734406_-	Twitching motility protein	NA	NA	NA	NA
VEF02140.1\|1734723_1735425_+	putative nucleoside phosphorylase	NA	NA	NA	NA
VEF02142.1\|1735443_1735821_+	Uncharacterised protein	NA	NA	NA	NA
VEF02144.1\|1736114_1736945_+	Sulfate transport system permease protein CysW	NA	NA	NA	NA
VEF02146.1\|1736967_1737819_+	putative ABC transporter	NA	NA	NA	NA
VEF02148.1\|1737864_1738947_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-28	34.1
VEF02150.1\|1739039_1740077_-	sulfate-binding protein	NA	NA	NA	NA
VEF02152.1\|1740271_1741885_+	secreted protein	NA	NA	NA	NA
VEF02154.1\|1742091_1743651_-	beta-1,4-glucosyltransferase	NA	NA	NA	NA
VEF02155.1\|1743732_1744686_-	Pyrimidine-specific ribonucleoside hydrolase rihB	NA	NA	NA	NA
VEF02157.1\|1744790_1745762_+	trna-dihydrouridine synthase c	NA	NA	NA	NA
VEF02159.1\|1745871_1748229_+	Beta-N-acetylhexosaminidase precursor	NA	NA	NA	NA
VEF02161.1\|1748883_1750122_-	3-isopropylmalate dehydrogenase	Q77Z09	Phage_21	3.3e-11	61.1
VEF02162.1\|1750330_1750816_-	phosphoribosylaminoimidazole carboxylase catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	6.4e-19	41.7
VEF02164.1\|1750882_1751677_-	putative lipoprotein	NA	NA	NA	NA
VEF02166.1\|1751689_1752358_-	O-methyltransferase	NA	NA	NA	NA
VEF02168.1\|1752364_1752550_-	Protein of uncharacterised function (DUF3460)	NA	NA	NA	NA
VEF02170.1\|1752835_1754188_+	poly(A) polymerase	H7BUW3	unidentified_phage	2.3e-29	39.1
1754202:1754223	attL	NA	NA	NA	NA
VEF02172.1\|1754261_1754750_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA
VEF02174.1\|1754753_1755398_+	Deoxyguanosine kinase	A0A127AVX2	Bacillus_phage	3.1e-13	27.5
VEF02176.1\|1755445_1755898_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	G0YQD9	Erwinia_phage	6.1e-48	69.1
VEF02178.1\|1756190_1757450_+	transcription termination factor Rho	NA	NA	NA	NA
VEF02180.1\|1757585_1758935_+	Deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
VEF02182.1\|1759669_1760140_-\|integrase	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	1.2e-38	54.6
1765846:1765867	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2170350 : 2230779

Bacillus_phage(10.0%)

tRNA,integrase,transposase

attL 2146703:2146723|attR 2236965:2236985

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2146703:2146723	attL	NA	NA	NA	NA
VEF02967.1\|2170350_2170704_+\|transposase	transposase	NA	NA	NA	NA
VEF02969.1\|2170700_2171033_+\|transposase	transposase	A0A1B1P773	Bacillus_phage	7.0e-09	45.2
VEF02971.1\|2171029_2171296_+\|integrase	integrase	A0A2I6AZV9	Macacine_betaherpesvirus	3.3e-17	53.9
VEF02973.1\|2171295_2175960_+	Cell wall-associated polypeptide CWBP200	A0A2H4JFP5	uncultured_Caudovirales_phage	8.1e-26	34.6
VEF02975.1\|2175975_2176251_+	Uncharacterised protein	NA	NA	NA	NA
VEF02977.1\|2176378_2176999_+	Uncharacterised protein	NA	NA	NA	NA
VEF02979.1\|2177771_2178122_+	Uncharacterised protein	NA	NA	NA	NA
VEF02981.1\|2178210_2178573_+	Uncharacterised protein	NA	NA	NA	NA
VEF02983.1\|2179036_2180236_+	Cell wall-associated polypeptide CWBP200	NA	NA	NA	NA
VEF02985.1\|2180244_2180523_+	Uncharacterised protein	NA	NA	NA	NA
VEF02987.1\|2180918_2181395_+	Uncharacterised protein	NA	NA	NA	NA
VEF02989.1\|2181708_2182758_+	Cell wall-associated polypeptide CWBP200	NA	NA	NA	NA
VEF02991.1\|2183108_2183807_+\|transposase	transposase for IS1655	Q9MBM9	Staphylococcus_prophage	2.3e-25	35.0
VEF02993.1\|2183874_2184753_-	dTDP-4-dehydrorhamnose reductase	A0A1D8EQE2	Escherichia_phage	8.8e-43	38.3
VEF02995.1\|2184901_2185234_+	Uncharacterised BCR, YnfA/UPF0060 family	A0A218MNG8	uncultured_virus	1.7e-23	53.1
VEF02997.1\|2185465_2186791_+	Predicted membrane protein	NA	NA	NA	NA
VEF02999.1\|2187166_2187823_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
VEF03001.1\|2187875_2188607_+	Uncharacterised protein	NA	NA	NA	NA
VEF03003.1\|2188690_2189983_+	histidinol dehydrogenase	NA	NA	NA	NA
VEF03005.1\|2190225_2191014_+	Uncharacterised protein	NA	NA	NA	NA
VEF03007.1\|2191065_2192991_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
VEF03009.1\|2193018_2194806_-	Na/Pi-cotransporter II-related protein	NA	NA	NA	NA
VEF03011.1\|2195101_2196910_-\|tRNA	aspartyl-tRNA synthetase	NA	NA	NA	NA
VEF03013.1\|2197148_2197835_-	integral membrane protein	NA	NA	NA	NA
VEF03015.1\|2197915_2199046_-	phopholipase	NA	NA	NA	NA
VEF03017.1\|2199207_2199471_-	30S ribosomal protein S20	NA	NA	NA	NA
VEF03018.1\|2199690_2200161_+	SEC-C domain-containing protein	NA	NA	NA	NA
VEF03020.1\|2200259_2201783_-	Propionyl-CoA:succinate CoA transferase	NA	NA	NA	NA
VEF03022.1\|2202042_2203608_+	putative oxidoreductase	NA	NA	NA	NA
VEF03024.1\|2203706_2205167_+	phopholipase D-family protein	NA	NA	NA	NA
VEF03026.1\|2205280_2205520_+	Uncharacterised protein	NA	NA	NA	NA
VEF03028.1\|2205635_2206829_-	aromatic amino acid aminotransferase	NA	NA	NA	NA
VEF03030.1\|2206997_2207684_+	oxidative stress defense protein	NA	NA	NA	NA
VEF03032.1\|2207843_2208671_+	peptidase, M48 family	NA	NA	NA	NA
VEF03034.1\|2208725_2209529_+	peptidase, M48 family	NA	NA	NA	NA
VEF03036.1\|2209823_2212409_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
VEF03038.1\|2212873_2213992_+	ABC transporter ATP-binding protein, polyamine	Q6GZ03	Mycoplasma_phage	3.9e-27	36.4
VEF03040.1\|2214002_2214971_+	ABC transporter permease, polyamine	NA	NA	NA	NA
VEF03042.1\|2214963_2215857_+	putative spermidine/putrescine transport system permease	NA	NA	NA	NA
VEF03044.1\|2215911_2217108_-	Molybdopterin molybdenumtransferase	NA	NA	NA	NA
VEF03046.1\|2217100_2217682_-	putative molybdopterin-guanine dinucleotide biosynthesis protein A	NA	NA	NA	NA
VEF03048.1\|2217672_2218131_-	Molybdopterin synthase catalytic subunit	NA	NA	NA	NA
VEF03050.1\|2218133_2218382_-	molybdopterin synthase small subunit	NA	NA	NA	NA
VEF03052.1\|2218533_2220420_+	putative two-component system sensor protein	NA	NA	NA	NA
VEF03054.1\|2220416_2221067_+	NarL/NarP	NA	NA	NA	NA
VEF03056.1\|2221101_2221629_+	lipoprotein	A0A1V0DZX6	Clostridioides_phage	1.9e-24	42.6
VEF03058.1\|2221765_2222518_-	stationary phase survival protein SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.6e-63	46.4
VEF03060.1\|2222737_2223238_-	Uncharacterised protein	NA	NA	NA	NA
VEF03062.1\|2223490_2225260_-	sodium/proline symporter	NA	NA	NA	NA
VEF03064.1\|2225263_2225527_-	Predicted membrane protein	NA	NA	NA	NA
VEF03066.1\|2226583_2227261_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
VEF03068.1\|2227484_2227898_+	Periplasmic protein	NA	NA	NA	NA
VEF03070.1\|2228025_2229651_+	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.5e-157	53.5
VEF03072.1\|2229785_2230202_+\|transposase	IS1106 transposase	NA	NA	NA	NA
VEF03074.1\|2230251_2230779_+\|transposase	IS1106 transposase (fragment)	NA	NA	NA	NA
2236965:2236985	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134313

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection