CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134312	Enterococcus faecalis strain NCTC8745 genome assembly, chromosome: 1	3 crisprs	csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	0	21	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134312_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134312_1

440524-441087

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	PILER-CR
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CRISPRCasFinder
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CRT

8 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LR134312_1

>merge|LR134312|1|440524-441087|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACTGACAACATTGTAATTGAGAACGCACGTATGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACAACTATTGTCCGTTTTGCGGGAAAGAAGTTGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACTGATGATGCACAGCAAAACACATTTAAGATGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACAGCTTTAAGCTCCTTCAAGACTTTCTCTTTGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACTGGCTTGTTGTTACGTGTATTACAGACGGGGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACGCACACACACGCTACTCACAGGCATTATAGGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACTCATAGCAGACCAACCTGCTCCATCGCTTGGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACCAATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACG

>LR134312|1|1|440524-441021|PILER-CR
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGACAACATTGTAATTGAGAACGCACGTAT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	AACTATTGTCCGTTTTGCGGGAAAGAAGTT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGATGATGCACAGCAAAACACATTTAAGAT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	AGCTTTAAGCTCCTTCAAGACTTTCTCTTT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGGCTTGTTGTTACGTGTATTACAGACGGG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	GCACACACACGCTACTCACAGGCATTATAG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TCATAGCAGACCAACCTGCTCCATCGCTTG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC

>LR134312|1|1|440524-441087|CRISPRCasFinder
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGACAACATTGTAATTGAGAACGCACGTAT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	AACTATTGTCCGTTTTGCGGGAAAGAAGTT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGATGATGCACAGCAAAACACATTTAAGAT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	AGCTTTAAGCTCCTTCAAGACTTTCTCTTT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGGCTTGTTGTTACGTGTATTACAGACGGG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	GCACACACACGCTACTCACAGGCATTATAG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TCATAGCAGACCAACCTGCTCCATCGCTTG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CAATGTAAATGCTCATTATGATTTACATAT
GTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACG

>LR134312|1|1|440524-441087|CRT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGACAACATTGTAATTGAGAACGCACGTAT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	AACTATTGTCCGTTTTGCGGGAAAGAAGTT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGATGATGCACAGCAAAACACATTTAAGAT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	AGCTTTAAGCTCCTTCAAGACTTTCTCTTT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGGCTTGTTGTTACGTGTATTACAGACGGG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	GCACACACACGCTACTCACAGGCATTATAG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TCATAGCAGACCAACCTGCTCCATCGCTTG
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CAATGTAAATGCTCATTATGATTTACATAT
GTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACG

Protein	Signature genes	Signature genes Name	Protein_function
LR134312.1\|VEE94373.1\|447350_447905_+\|acetyltransferase,-GNAT-family-protein	unknown	unknown	gnl\|CDD\|224584
LR134312.1\|VEE94379.1\|451481_451823_+\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237467
LR134312.1\|VEE94359.1\|439441_439771_+\|CRISPR-associated-Cas2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134312.1\|VEE94381.1\|451978_453214_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|277319
LR134312.1\|VEE94361.1\|439771_440431_+\|CRISPR-associated-protein-csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LR134312.1\|VEE94350.1\|429672_431322_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
LR134312.1\|VEE94356.1\|433858_434092_+\|Isoleucyl-tRNA-synthetase,-putative	unknown	unknown	unknown
LR134312.1\|VEE94377.1\|449232_451419_+\|penicillin-binding-protein-2A	unknown	unknown	gnl\|CDD\|273955
LR134312.1\|VEE94367.1\|443671_445189_+\|choline-ABC-transporter,-osmoprotectant-binding-protein	unknown	unknown	gnl\|CDD\|270328
LR134312.1\|VEE94363.1\|441468_442482_-\|Fucose-4-O-acetylase-and-related-acetyltransferases	unknown	unknown	gnl\|CDD\|226122
LR134312.1\|VEE94371.1\|445819_447340_+\|phosphomannomutase	unknown	unknown	gnl\|CDD\|215211
LR134312.1\|VEE94369.1\|445330_445786_+\|transcriptional-regulator-of-arginine-metabolism	unknown	unknown	gnl\|CDD\|224355
LR134312.1\|VEE94375.1\|448026_448890_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
LR134312.1\|VEE94357.1\|434564_438578_+\|CRISPR-associated-protein-csn1	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134312.1\|VEE94365.1\|442717_443671_+\|glycine-betaine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
LR134312.1\|VEE94345.1\|427397_427820_-\|cytidine/deoxycytidylate-deaminase-family-protein,-putative	unknown	unknown	gnl\|CDD\|223372
LR134312.1\|VEE94347.1\|427948_429469_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	unknown	unknown	gnl\|CDD\|237588
LR134312.1\|VEE94352.1\|431430_432165_+\|ribosomal-small-subunit-pseudouridine-synthase-B	unknown	unknown	gnl\|CDD\|224108
LR134312.1\|VEE94354.1\|432298_433714_+\|dipeptidase	unknown	unknown	gnl\|CDD\|130941
LR134312.1\|VEE94358.1\|438578_439445_+\|cytoplasmic-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851

Protein	Function_ID	Function_description	E-value
LR134312.1\|VEE94373.1\|447350_447905_+\|acetyltransferase,-GNAT-family-protein	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	7.67423e-25
LR134312.1\|VEE94379.1\|451481_451823_+\|putative-transcriptional-regulator	gnl\|CDD\|237467	PRK13676, PRK13676, YlbF/YmcA family competence regulator.	2.56028e-37
LR134312.1\|VEE94359.1\|439441_439771_+\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.08189e-44
LR134312.1\|VEE94381.1\|451978_453214_+\|exonuclease-subunit-SbcD	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.06439e-49
LR134312.1\|VEE94361.1\|439771_440431_+\|CRISPR-associated-protein-csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.31098e-118
LR134312.1\|VEE94350.1\|429672_431322_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.27874e-136
LR134312.1\|VEE94377.1\|449232_451419_+\|penicillin-binding-protein-2A	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
LR134312.1\|VEE94367.1\|443671_445189_+\|choline-ABC-transporter,-osmoprotectant-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.06182e-168
LR134312.1\|VEE94363.1\|441468_442482_-\|Fucose-4-O-acetylase-and-related-acetyltransferases	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	2.63008e-11
LR134312.1\|VEE94371.1\|445819_447340_+\|phosphomannomutase	gnl\|CDD\|215211	PLN02371, PLN02371, phosphoglucosamine mutase family protein.	0
LR134312.1\|VEE94369.1\|445330_445786_+\|transcriptional-regulator-of-arginine-metabolism	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	1.0984e-46
LR134312.1\|VEE94375.1\|448026_448890_-\|pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.00441e-91
LR134312.1\|VEE94357.1\|434564_438578_+\|CRISPR-associated-protein-csn1	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LR134312.1\|VEE94365.1\|442717_443671_+\|glycine-betaine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.78143e-140
LR134312.1\|VEE94345.1\|427397_427820_-\|cytidine/deoxycytidylate-deaminase-family-protein,-putative	gnl\|CDD\|223372	COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism].	9.64506e-24
LR134312.1\|VEE94347.1\|427948_429469_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	gnl\|CDD\|237588	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase.	0
LR134312.1\|VEE94352.1\|431430_432165_+\|ribosomal-small-subunit-pseudouridine-synthase-B	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	3.29085e-91
LR134312.1\|VEE94354.1\|432298_433714_+\|dipeptidase	gnl\|CDD\|130941	TIGR01886, Beta-Ala-Xaa_dipeptidase, dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
LR134312.1\|VEE94358.1\|438578_439445_+\|cytoplasmic-protein	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.59266e-115

>LR134312.1|VEE94361.1|439771_440431_+|CRISPR-associated-protein-csn2
MRVNFSLLEEPIEIEKATFLTIKDVQTFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGITVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA
>LR134312.1|VEE94359.1|439441_439771_+|CRISPR-associated-Cas2-family-protein
MSYRYMRLLLMFDMPTDTASDRKAYRKFRKFLINEGFIMHQFSVYSKILLNDTANKAMLARLKQNNPQRGLITLLNVTEKQFSRMIYLHGEQDNRVANSDERIVFLGEE
>LR134312.1|VEE94358.1|438578_439445_+|cytoplasmic-protein
MGWRTVVVNKHSKLSYKNNHLVFKAIDHQELIHLSEIDVLLLETTDISLTTMLLKRLIDEKILVLFCDDKRLPIGKILPFYGRHDSSLQLTRQLAWTEERKGQVWTAIIAQKITNQSLHLAQRDYGQKAAALLAMRAELRLFDPANREGHAARSYFNTLFGNDFTREQENDINAGLNYGYTLLLSIFARELVQTGCFTQLGLKHANQFNDFNLASDLMEPFRPLVDQIIYENRKEAFPIMKRKLFALFMNTYMYKKKQMFLTNIATDYTKHVVKVLNQEEEGVPEFGI
>LR134312.1|VEE94357.1|434564_438578_+|CRISPR-associated-protein-csn1
MKKDYVIGLDIGTNSVGWAVMTEDYQLVKKKMPIYGNTEKKKIKKNFWGVRLFEEGHTAEDRRLKRTARRRISRRRNRLRYLQAFFEEAMTDLDENFFARLQESFLVPEDKKWHRHPIFAKLEDEVAYHETYPTIYHLRKKLADSSEQADLRLIYLALAHIVKYRGHFLIEGKLSTENISVKEQFQQFMIIYNQTFVNGESRLVSAPLPESVLIEEELTEKASRTKKSEKVLQQFPQEKANGLFGQFLKLMVGNKADFKKVFGLEEEAKITYASESYEEDLEGILAKVGDEYSDVFLAAKNVYDAVELSTILADSDKKSHAKLSSSMIVRFTEHQEDLKKFKRFIRENCPDEYDNLFKNEQKDGYAGYIAHAGKVSQLKFYQYVKKIIQDIAGAEYFLEKIAQENFLRKQRTFDNGVIPHQIHLAELQAIIHRQAAYYPFLKENQEKIEQLVTFRIPYYVGPLSKGDASTFAWLKRQSEEPIRPWNLQETVDLDQSATAFIERMTNFDTYLPSEKVLPKHSLLYEKFMVFNELTKISYTDDRGIKANFSGKEKEKIFDYLFKTRRKVKKKDIIQFYRNEYNTEIVTLSGLEEDQFNASFSTYQDLLKCGLTRAELDHPDNAEKLEDIIKILTIFEDRQRIRTQLSTFKGQFSAEVLKKLERKHYTGWGRLSKKLINGIYDKESGKTILGYLIKDDGVSKHYNRNFMQLINDSQLSFKNAIQKAQSSEHEETLSETVNELAGSPAIKKGIYQSLKIVDELVAIMGYAPKRIVVEMARENQTTSTGKRRSIQRLKIVEKAMAEIGSNLLKEQPTTNEQLRDTRLFLYYMQNGKDMYTGDELSLHRLSHYDIDHIIPQSFMKDDSLDNLVLVGSTENRGKSDDVPSKEVVKDMKAYWEKLYAAGLISQRKFQRLTKGEQGGLTLEDKAHFIQRQLVETRQITKNVAGILDQRYNANSKEKKVQIITLKASLTSQFRSIFGLYKVREVNDYHHGQDAYLNCVVATTLLKVYPNLAPEFVYGEYPKFQTFKENKATAKAIIYTNLLRFFTEDEPRFTKDGEILWSNSYLKTIKKELNYHQMNIVKKVEVQKGGFSKESIKPKGPSNKLIPVKNGLDPQKYGGFDSPIVAYTVLFTHEKGKKPLIKQEILGITIMEKTRFEQNPILFLEEKGFLRPRVLMKLPKYTLYEFPEGRRRLLASAKEAQKGNQMVLPEHLLTLLYHAKQCLLPNQSESLAYVEQHQPEFQEILERVVDFAEVHTLAKSKVQQIVKLFEANQTADVKEIAASFIQLMQFNAMGAPSTFKFFQKDIERARYTSIKEIFDATIIYQSTTGLYETRRKVVD
>LR134312.1|VEE94356.1|433858_434092_+|Isoleucyl-tRNA-synthetase,-putative
MSETLIVNYLIKGRVKMNVEELVQKAKDLIGEGNVEHAQQFIEEHKDELGEHYHKITAMLADTTTDGLFDKIKGLFQ
>LR134312.1|VEE94354.1|432298_433714_+|dipeptidase
MTIDWTKEVEARKDDLLEDLQNLLRINSERDDAQATPEAPFGPGPVAGLKHMLAYGERDGFTVKNVDNYAGHIEYGEGDETLGIFGHMDVVPAGDGWETDPYEPVIKDGKIYARGASDDKGPSMAAYYAMKIIKELGLPVSKKIRFVVGSDEESGWGDMDYYFQHEEAPDFGFSPDAEFPIINGEKGNVTIRLTFRGGNGADYKLESFKSGLRENMVPGTADAVVTAASADEAASLAASFETFIKQEAKISGNAELSDKTVTFHVVGKGAHGASPQSGINAATFLATFLNDYSFAEGAYSFINTIAEFIHEDFYGEKLGVAFEDEKMGKLTMNAGIVNFDPENPENSLVTLNFRYPKGTSAEELQAKVQATVGETVTATQGDRNQEPHYVPVDDPLVATLLQVYEDHTGEKGQEQIIGGGTYGRLLKRGVAYGAMFPGYTDTMHQANEFMELDDLFRAAAIYADAIYRLAK
>LR134312.1|VEE94352.1|431430_432165_+|ribosomal-small-subunit-pseudouridine-synthase-B
MRLDKFLADVGIGSRKEIKQLLKKKVVTVNGDVVKEAKTQVNEETDQIALMGEILTYQKFFYYMLHKPQGVISATEDQRDETVIDLLTDQDYRADLFPVGRLDKDTEGLLLLTNDGQLAHQLLSPKKHVDKEYLAEVEGLVTAEDCQLFAQGFALKDGEIVKPSRLVIETINEEEGTSVVRLVIQEGKFHQVKRMLATVGKPVTYLKRLRMGELWLDETLELGGYRPLTEAELQQLQPKQSYLN
>LR134312.1|VEE94350.1|429672_431322_+|polysaccharide-biosynthesis-protein
MINQPNSVDQPILTNQEKMVKGSAWMTASNIISRMLGAIYIIPWYAWMGEHGNEANSLFSMGYTIYALFLMISTAGIPGAIAKQTSHYNSLNEYKISRQLFYRALQLMGGLGVVFAIVMYLASPALAALSGGGPELVPTMRSLSLAVLVFPSMSVIRGYFQGNQEMMPFALSQIVEQVARVFYMLLTAFIIMKVFEGNYVTAVTQATFAAFIGMLASFAVLGYYMYKQKPLFDYLEEHSANEHEIAPKELLIETFKEAIPFIVVGSGVTVFKLVDQFTFSNFMRLFTDYSDTQLRELFGIFNANPDKLTMIVVALATSISATGLPLITEAVTLKNHRELARLISNNLQLFVFVMLPATFGMIVLAQPLYTVFYMPDALGTSLLVQACYASLFLGLYMLVSNMLMGMYENRDAMRYLGIGLAVKLIVQFPAIRLFEVYGPLLATMIGFTVSCVLILRRIRQVTRFNYKLTLRRTLLMFCITVIMMIIALIFRQFLYLFLDPTRRFQAFIIVVIVAAAGGAFYGYSVLKIRLADRLLGKNAAKLRAKFNIK
>LR134312.1|VEE94347.1|427948_429469_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase
MTISLFAIRDCLEKEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFCKGLNFKEIYLENAVKDGLEIYVSEVPYEVPAQLGIIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESLTNTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALAKMIIDK
>LR134312.1|VEE94345.1|427397_427820_-|cytidine/deoxycytidylate-deaminase-family-protein,-putative
MDIWKKMYEYAKKEYHPQEVTPFIYTHHVVCALEAEDGQLFTGFCFESCCGVLDLCAERVAALNMYADSGQTVIKRIITFRDDVPNGISGMPCGACRELLLQLSPKNADTEILVDYQKREIVRLKELMPKWWGWSRYTND
>LR134312.1|VEE94363.1|441468_442482_-|Fucose-4-O-acetylase-and-related-acetyltransferases
MENDKRIYKWDNVKLFLIFLVIFGHILDREASPSRLMETINFWIYSFHMPAFIFVSGLFSKHAIKQRKYLRLLSFVWLYLLAKLLITLANFAFANKMNFDLLNETGVPWYLLSLASFYLITIFLQRVQPKIMLPIIIVIGCASGYLPVEGFLSLGRTLGFFPFFYCGYLMDIQKLQTFLDHRKVKWAAIGVILSSFLFVNSQWSLATKFWGFLTGWASYAEISPAFEYSSFIQLFFYVAAALVSLSWFALLPKRKLPLSALGKDTLYPYLLHMPLIILLESGLQLDTLFKEWFTFRILALFFLALFILAITNMPVVKRGADYLFNPQSIMIPKKIYK
>LR134312.1|VEE94365.1|442717_443671_+|glycine-betaine-ABC-transporter-ATP-binding-protein
MIKFQNVSKVYQENAVLSDVNLTIQQGEFFVLVGPSGSGKTTTLKMINRLIEPTTGEVALNEQAVTNYPLRELRLKIGYVLQQIALFPNLTVAENIELIPEMKKWPKEQRRERTIELLKKVQLNPEEYLHRKPAALSGGEQQRIGILRAIAAEPEVILMDEPFSALDPISRHHLQRLVKELHQELASTIVFVTHDMNEALLLGERICIMDAGKIIQVDTPEAIQKHPKNNFVGQFFKQSSPELANYCGADLTAFLEAADETIEPVPTVFMETNLKEIVQLINAQEKANLVEKQQVLGCITSKTITRFMEQLLESEGQ
>LR134312.1|VEE94367.1|443671_445189_+|choline-ABC-transporter,-osmoprotectant-binding-protein
MQALIETFFARKEEYLQALIEHMQLSFISLLFAALIAIPLAIYLTSHRKLAESLLQVTGIFQTIPSLALLGLLIPLIGIGRPPAIVALVIYALFPILQNTYTGLTEIDPSLEEAAEAFGMSKKEKLFKFELQMALPFIISGIRTATVLIIGTATLAALIGAGGLGTFILLGIDRNNLSLIFIGALSSAALAVLFNYGIHWLEKANGRRLIIGGTILGLLLGGSFFWNQQTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEIDLYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRSFAKAHQLKTISDLQKISNQLKAGFTLEFIDRQDGYKGLQEKYHLNLNVQSMEPALRYQAINNGEVNVIDAYSTDSELRQYDLVTLEDDQALFPPYQGAPLIKTATLEKYPELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKEKNLLK
>LR134312.1|VEE94369.1|445330_445786_+|transcriptional-regulator-of-arginine-metabolism
MKKAERQRLIKQLIMQQEIETQDELITRLEELGVRATQATVSRDIREMSIVKTHGADGRVKYAIFSQAQGTSSEEKLRESVKDSVVRMERVQFIVILHTEMGNADVVSNFLDEVAYPEVAGTVAGADTIIVITRSEEDAEHFIERIENMIF
>LR134312.1|VEE94371.1|445819_447340_+|phosphomannomutase
MVELKALQNGSDIRGIALDTEEQTATLTATAVAEIAVGVVRWLQDKKQLPRKAQQRLTIAIGHDSRLTAEPIKQALVDTFLSLGIQVIDVGLATTPAMFMATQFPTLQCDAAIMITASHLPYYFNGLKFFTAEGGAEKEDIRYILSHTDPLTANENGTLMKQELLPIYAEHLVAKIRQGIHSPEEKPLQGFRIIVDAGNGAGGFFAEQVLQVLGADTTGSQFLEPDGHFPNHVPNPDNSEAMKSIQTAVLANQADLGIIFDTDVDRSAVVDQSGEVLNRNNLIAVLAAIVLKEAPGSYIVTNSPTSSHLKTFIEEKGGQQIRYISGYRNVINKMIELNHGGFQTPLAIETSGHAAFQENYNLDDGAYVVAKILMLLPELKQNNQTLGDLIATLKQPAETNEFRFKITAEDVTCYGQQVLRDFELFVENQADFAVDRENQEGVRGNVSGQYGSGWFLLRLSLHEPLLVLQVENDQSDKNACVIEKIATFLQKYEEIDSQQIENNLGN
>LR134312.1|VEE94373.1|447350_447905_+|acetyltransferase,-GNAT-family-protein
MENVLKGKHIGFSHFREEYIEHIAKQQWDNELLRHLSWDALHPWGLEEWKDFTINKGEDDRFLFAILENTTEEFIGWVSLSDVQLKNRGANLGIAILQKEQRGQGYGFEAVSLICKFAFYELGLHKIRLAVNSNNQKAIHVYEKVGFKKEGIDREALFQDGQWLGIYNYGILQKEWLQMIKAES
>LR134312.1|VEE94375.1|448026_448890_-|pseudouridine-synthase
MEYSMRLPENFSTMTVKELLENEWLVPRKVRHFLRTRKNVKINGETAAFHFPVQAGDCVTLTFEETDYVRPTIHLGEATHVKVLYEDEHLMIVNKPYGIKTHPNQPQETDTLLNHVAAYLAEKNQVPYVVHRLDKETSGAIVFAKNPFVLPILGRLLETKQIYRQYQAIVAGHFNQKEQTINQPIGRDRHDRRKRRIDPQKGDSAITHVQVVQTLSNNQTAVTCVLETGRTHQIRVHLASEGHPIIGDPLYNPKSQAARLMLHASQLHLLHPFTKKQIVVTAAPGLW
>LR134312.1|VEE94377.1|449232_451419_+|penicillin-binding-protein-2A
MDNLKQFFSKVGVGLRHFWTWIKPYLIQFHQARKRIWKKYQINKIFLLIGLVVALGASIYLFYLAKSANVETLKSGLSESTRVYDESGEEVGKLFGQKGTFVELDNISPYIQDAVISTEDRGFYQHKGYSIKGIARAVVGKLTFGKIGGGGGGSTITQQLAKNAYLTQEQTLDRKARELFLAIEIEKKYSKKDILAMYLNNSYFGNGVWGVQDAARKYFGVDASQVTVGEAATLAGMLKGPGIYNPIDYIDNATARRNTVLQLMVDNKKLSQEEANQEASVNLASLLNDTYVGDENSYKYPYYFDAVIDEAVNRYKFKEEDILNKGYKIYTSLNQKYQDAMDATYKNDALFPPNAEDGAMVQSGSVAIDPKTGGVQALVGGRGEHVYRGFNFATQTKRSPGSSLKPISVYTPALEAGYKPDSVLEDKPQDYYPAQNYSRTYSGEVPMYQALGESLNLPAVWLLHQIGLDKGYEKTEKFGIPLSEKDRYYGLALGGLQTGVSPLTMAGAYSAFANEGYKTETHLITKIVDSTGAIVVDNTKVKKEQVITKDVADGITSMLLGVFSSGSGVNAQPAGYVMAGKTGTTETNFDSSKTNDQWVIGYTPEVVIATWLGFQETSKTHYLEGSSATYASQVFNSQASGILPQVKQAQFPVADAYATGGKVVDSNDSLTGGANSNWRDNLKDFGNSVQDGASNFGDTLNEVGGQIKDGAKKVKDKIEGIFGGLLGN
>LR134312.1|VEE94379.1|451481_451823_+|putative-transcriptional-regulator
MSNIYDTANQIERELRELDEFKALQAAYEEVKADEAAYTLFKEFQGFQQGLQEKQMRGEEFTDEDAEKAQSIATKVQETAVINELMQKEQAFSLVVNDLNRIIMTPVRDMYND
>LR134312.1|VEE94381.1|451978_453214_+|exonuclease-subunit-SbcD
MKLLHTADLHMDRSFEGLTGIPTALAKRLREANQQLLMNIVTVAIREAVDLVIFAGDTFHQSQTSISMQAQLMAALEQLKQAEIPVILTFGNHDYYKKDRYWFSFPDNVFLFEKEMVETLYFETKAGEQVAVSGFSYEHPWIDENKALEFPIKQAESDIHIGIYHGDTSRKAQQNYAPFTWKDLKATGYNYWALGHIHQPQIVSEQPLIVYPGTPQGHTKKEQSLQGVAVVTLSQNQATVQFEKVAEIDWTNEEVSLAQCRDTQSVLSYLETSLLTKWHAHQQQQLMALTLKETQHLDVTVVQAIVNGELLSYLQQQLLQKTQGDFFVYRLILQAEEPTKEPIYLSASPNLLTALEKTYLDPVIFEDTTKELLRYPEFAGIFSMDEQWRLESLRLAHEQINEDFTIQEDPL

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Crispr_ID: LR134312_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134312_2

1684831-1686120

Orphan

II-A,II-B

Consensus_repeat	Method
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CRISPRCasFinder
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CRT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	PILER-CR

19 spacers

The CRISPR arrays of LR134312_2

>merge|LR134312|2|1684831-1686120|CRISPRCasFinder,CRT,PILER-CR
GTGATAGTTTGTTTTTTAACAACATGGCTCTAAAACAAATTTTTTGAACTTAATGCAATTTCTTGAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACAAAACTTTTGACGGCTCTTTAGTCAACCCAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACTTTGATAATCCAGAATCAACATCTTCACCAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACGCTAATCATCATATACGCTAATTTAAATTGGTTTTGGTACCATTCTAAACAACATGACTCTAAAACTTAGGATTGCATCACGCTCTACTTCAACATGTTTTGGTACCATTCTAAACAACATGACTCTAAAACGCAACTTTTGTTTTCTTTTCTTCTTTTGCTGTTTTGGTACCATTCTAAACAACATGACTCTAAAACTACGAGCTCCCAACATACGTTGACGGTGCAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACAGCTTCAGTAAATTGGTTACACAAACCTCAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACCCTTGATAAGATCCACCTCCTGATCCAGAAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACGTGGCAATGAACTTGTCTAAAAATGAGGAAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACCCACTTGACGTAACAGAGTTGAAACGCACTGTTTTGGTACCATTCTAAACAACATGACTCTAAAACTCTGTAAAGTATGCTTTACCTGATTGTTCAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACAACCCTCTTACTATGAGTTCCATTTATTTTGTTTTGGTACCATTCTAAACAACATGACTCTAAAACGAACATTGCGAAACAATAGATGAATTTGTTGTTTTGGTACCATTCTAAACAACATGACTCTAAAACCCGTAAACTCTCGGACGTGACTCAATATAAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACATTTATTAGTTTCGTTAATCTTAATATTGAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACTGTGCATTCGCACTAATATCCGTTTACGTAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACATCAGAAAGAGAGTGAAGCTGATGTCTCAAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACATTCTCTGTCACATTCCATTAGTTCCATGTGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>LR134312|2|2|1684831-1686120|CRISPRCasFinder
GTGATAGTTTGTTTTTTAACAACATGGCTCTAAAAC	AAATTTTTTGAACTTAATGCAATTTCTTGA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AAAACTTTTGACGGCTCTTTAGTCAACCCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TTTGATAATCCAGAATCAACATCTTCACCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GCTAATCATCATATACGCTAATTTAAATTG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TTAGGATTGCATCACGCTCTACTTCAACAT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GCAACTTTTGTTTTCTTTTCTTCTTTTGCT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TACGAGCTCCCAACATACGTTGACGGTGCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AGCTTCAGTAAATTGGTTACACAAACCTCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCTTGATAAGATCCACCTCCTGATCCAGAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GTGGCAATGAACTTGTCTAAAAATGAGGAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCACTTGACGTAACAGAGTTGAAACGCACT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TCTGTAAAGTATGCTTTACCTGATTGTTCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AACCCTCTTACTATGAGTTCCATTTATTTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GAACATTGCGAAACAATAGATGAATTTGTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCGTAAACTCTCGGACGTGACTCAATATAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATTTATTAGTTTCGTTAATCTTAATATTGA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TGTGCATTCGCACTAATATCCGTTTACGTA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATCAGAAAGAGAGTGAAGCTGATGTCTCAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATTCTCTGTCACATTCCATTAGTTCCATGT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>LR134312|2|2|1684831-1686120|CRT
GTGATAGTTTGTTTTTTAACAACATGGCTCTAAAAC	AAATTTTTTGAACTTAATGCAATTTCTTGA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AAAACTTTTGACGGCTCTTTAGTCAACCCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TTTGATAATCCAGAATCAACATCTTCACCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GCTAATCATCATATACGCTAATTTAAATTG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TTAGGATTGCATCACGCTCTACTTCAACAT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GCAACTTTTGTTTTCTTTTCTTCTTTTGCT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TACGAGCTCCCAACATACGTTGACGGTGCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AGCTTCAGTAAATTGGTTACACAAACCTCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCTTGATAAGATCCACCTCCTGATCCAGAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GTGGCAATGAACTTGTCTAAAAATGAGGAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCACTTGACGTAACAGAGTTGAAACGCACT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TCTGTAAAGTATGCTTTACCTGATTGTTCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AACCCTCTTACTATGAGTTCCATTTATTTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GAACATTGCGAAACAATAGATGAATTTGTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCGTAAACTCTCGGACGTGACTCAATATAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATTTATTAGTTTCGTTAATCTTAATATTGA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TGTGCATTCGCACTAATATCCGTTTACGTA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATCAGAAAGAGAGTGAAGCTGATGTCTCAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATTCTCTGTCACATTCCATTAGTTCCATGT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>LR134312|2|2|1685161-1686120|PILER-CR
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GCAACTTTTGTTTTCTTTTCTTCTTTTGCT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TACGAGCTCCCAACATACGTTGACGGTGCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AGCTTCAGTAAATTGGTTACACAAACCTCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCTTGATAAGATCCACCTCCTGATCCAGAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GTGGCAATGAACTTGTCTAAAAATGAGGAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCACTTGACGTAACAGAGTTGAAACGCACT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TCTGTAAAGTATGCTTTACCTGATTGTTCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	AACCCTCTTACTATGAGTTCCATTTATTTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GAACATTGCGAAACAATAGATGAATTTGTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCGTAAACTCTCGGACGTGACTCAATATAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATTTATTAGTTTCGTTAATCTTAATATTGA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TGTGCATTCGCACTAATATCCGTTTACGTA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATCAGAAAGAGAGTGAAGCTGATGTCTCAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATTCTCTGTCACATTCCATTAGTTCCATGT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134312.1\|VEE96676.1\|1678494_1680258_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|227320
LR134312.1\|VEE96666.1\|1671599_1672301_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
LR134312.1\|VEE96702.1\|1695616_1696591_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|235039
LR134312.1\|VEE96696.1\|1692552_1693677_-\|tRNA-specific-2-thiouridylase-MnmA	unknown	unknown	gnl\|CDD\|234664
LR134312.1\|VEE96692.1\|1690602_1691118_+\|Phosphatidylethanolamine-binding-protein	unknown	unknown	gnl\|CDD\|176643
LR134312.1\|VEE96686.1\|1687225_1689307_-\|putative-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236078
LR134312.1\|VEE96690.1\|1689900_1690470_-\|Tetracycline-repressor-protein-class-B-from-transposon-Tn10	unknown	unknown	gnl\|CDD\|379115
LR134312.1\|VEE96680.1\|1681995_1683009_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
LR134312.1\|VEE96688.1\|1689437_1689803_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|336361
LR134312.1\|VEE96664.1\|1670732_1671482_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|224059
LR134312.1\|VEE96678.1\|1680257_1681991_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274323
LR134312.1\|VEE96698.1\|1693902_1694247_-\|cytosolic-protein	unknown	unknown	gnl\|CDD\|370163
LR134312.1\|VEE96694.1\|1691134_1692373_+\|multidrug-resistance-efflux-pump	unknown	unknown	gnl\|CDD\|340949
LR134312.1\|VEE96672.1\|1676407_1677313_-\|UbiA-prenyltransferase-family-protein	unknown	unknown	gnl\|CDD\|235695
LR134312.1\|VEE96670.1\|1675167_1676379_-\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
LR134312.1\|VEE96684.1\|1686277_1687141_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|214874
LR134312.1\|VEE96668.1\|1672430_1674854_-\|stage-III-sporulation-protein-E	unknown	unknown	gnl\|CDD\|224588
LR134312.1\|VEE96674.1\|1677434_1678415_+\|Heptaprenyl-diphosphate-synthase-component-II	unknown	unknown	gnl\|CDD\|223220
LR134312.1\|VEE96700.1\|1694314_1695460_-\|aminotransferase-class-V-family-protein	unknown	unknown	gnl\|CDD\|224029
LR134312.1\|VEE96682.1\|1683005_1684424_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376587

Protein	Function_ID	Function_description	E-value
LR134312.1\|VEE96676.1\|1678494_1680258_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
LR134312.1\|VEE96666.1\|1671599_1672301_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	5.36718e-38
LR134312.1\|VEE96702.1\|1695616_1696591_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|235039	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional.	0
LR134312.1\|VEE96696.1\|1692552_1693677_-\|tRNA-specific-2-thiouridylase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
LR134312.1\|VEE96692.1\|1690602_1691118_+\|Phosphatidylethanolamine-binding-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	5.73504e-32
LR134312.1\|VEE96686.1\|1687225_1689307_-\|putative-DNA-topoisomerase	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
LR134312.1\|VEE96690.1\|1689900_1690470_-\|Tetracycline-repressor-protein-class-B-from-transposon-Tn10	gnl\|CDD\|379115	pfam13305, WHG, WHG domain. This presumed domain is around 80 amino acids in length. It is found to the C-terminus of a DNA-binding helix-turn-helix domain. This domain may be involved in binding to an as yet unknown ligand that allows a transcriptional regulation response to that molecule. The domain is named WHG after three conserved residues near the C-terminus of the domain.	2.91104e-15
LR134312.1\|VEE96680.1\|1681995_1683009_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	9.60464e-103
LR134312.1\|VEE96688.1\|1689437_1689803_-\|DNA-binding-protein	gnl\|CDD\|336361	pfam06279, DUF1033, Protein of unknown function (DUF1033). This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.	4.62165e-64
LR134312.1\|VEE96664.1\|1670732_1671482_-\|ABC-transporter	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	2.63593e-110
LR134312.1\|VEE96678.1\|1680257_1681991_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|274323	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD.	0
LR134312.1\|VEE96698.1\|1693902_1694247_-\|cytosolic-protein	gnl\|CDD\|370163	pfam08866, DUF1831, Putative amino acid metabolism. Solution of the structure of the Lactobacillus plantarum protein from this family has indicated a potential new fold with remote similarities to TBP-like (TATA-binding protein) structures. This similarity, in combination with genomic context analysis, leads us to propose an involvement in amino-acid metabolism. The potentially novel fold is an alpha + beta fold comprising two beta sheets packed against a single helix. The enzyme is present in the cytosol.	1.33245e-53
LR134312.1\|VEE96694.1\|1691134_1692373_+\|multidrug-resistance-efflux-pump	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.18762e-174
LR134312.1\|VEE96672.1\|1676407_1677313_-\|UbiA-prenyltransferase-family-protein	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	8.82053e-105
LR134312.1\|VEE96670.1\|1675167_1676379_-\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	1.24993e-121
LR134312.1\|VEE96684.1\|1686277_1687141_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|214874	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.	5.03983e-27
LR134312.1\|VEE96668.1\|1672430_1674854_-\|stage-III-sporulation-protein-E	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.7537e-174
LR134312.1\|VEE96674.1\|1677434_1678415_+\|Heptaprenyl-diphosphate-synthase-component-II	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	7.02455e-80
LR134312.1\|VEE96700.1\|1694314_1695460_-\|aminotransferase-class-V-family-protein	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	4.17386e-179
LR134312.1\|VEE96682.1\|1683005_1684424_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0

>LR134312.1|VEE96682.1|1683005_1684424_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MFDIVTLARIQFAMTTVFHFFFVPFSIGLALVVAIMETMYVVKKEERYRKMAKFWGNIFLLSFAVGVVTGIIQEFQFGMNWSDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFTWDKMNPKVHVTFIWLVVFGSMMSAFWILVANSFMQHPVGYVINNGRAEMVDFVAVISNPKVWYEFSHVIMGAFTLGGMAVAGMAAFQLLKKRDISFHKASMRIGLWVTLFGSIGVLLAGDLQMKALIEGQPMKFAAMEGAYEDSDDPAAWTLIAWADEREHKQVFGIDIPYMLSILSYNKLSGSVDGMDTVNKRLVEKYGDDKNYYPPVNTLFWSFRIMAGFGALMLLVAALGLFFTRKKKPSLYEKKWMLWIVALCTFAPFLANTTGWLVTELGRYPWTVYGLFTIEQSVSPNVSVASLITSNVIYFLLFAGLGSVMVYLVILELRKGPDYEAKKLAKENEPALDPFDKGVFGE
>LR134312.1|VEE96680.1|1681995_1683009_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MSTLQLLWFVLIGVLFSGFFFLEGFDFGVGMAVQTLAHNDDEKDQVVATIGPVWDGNEVWLLTAGGAMFASFPYWYASLFSGYYLILFTILFGLIIRGVSFEFRHNMPEGKRRRMWNWTLSIGSFLVPFFFGILFISLVQGMPLDANGNMHAQFTDYFNLFSIVGGVALTLLCYLHGMNYIALKTEGPIRERARNYAEILYGVLYVGLVVFAVLMYFKTDFYEKNFAVTLILTLAIVVLTVIANVGVFKRKEMLAFLASGLTLVVLVALLFSGLFPRVMIGSEGFDLLIKDATSTPYTLKIMTWISLSILPFVLAYTAWSYYIFRKRISQTAVPEGY
>LR134312.1|VEE96678.1|1680257_1681991_-|ABC-transporter-ATP-binding-protein
MIDKDILQMPKIKKILVLLAGFSFLQAVFIIGQAFFLSKAIVGLWSGGHLNQQLQSILLFFIFYLGRHVITYFRERMLDTFSYERSKELREQLLTKIFRLGPNVVQKNGTGNMVTMALEGISQTENYLQLILTKMMNMMIIPWIILAFVFTQDIRSGVTLLIVFPIIIIFMIVLGYAAQSKADKQYAAFQMLSNHFIDSLRGIDTLKLFGLSKKYAGSIYHTSERFRKATMSTLKIAILSTFALDFFTTLSVAVVAVFLGLSLLNGTILLFPALVTLILAPEFFLPIRDFSSDYHATLDGKNSFQAIQAVLALPEAEQTDVLTLDDWHQESQLSVTALNFSYEDATQEAIQSLQFSVDGRKKIGIIGASGSGKSTLINLLSGFLLPTEETSQLAINGQTIPHFLQKDWQKQILYIPQAPYIFQDTLANNIRFYTPEATDEAIQQAIQLVGLDELVKDLPEGIHTLIGESGRMLSGGQAQRVALARAFVDQKRHVLLFDEPTAHLDIETEVEMKERMLPLMNNHLVFFATHRLHWMEEMDYILVMEKGQLVEQGTLAELIEKDGYYVQLMKQMRGGRQ
>LR134312.1|VEE96676.1|1678494_1680258_-|ABC-transporter-ATP-binding-protein
MEKQPTTKDVWKNDQWVRPFLKRYKKTLYFALLLGFLTFFSAGALMFTSGYLISRAASLPENILLIYIPIVLTRAFGIGRPVFRYVERLTSHNWVLKMTSDLRLKLYNVLEKDAIFFKTKYRTGDILGLLSEDINHIQNLYLRTIFPTVIAWILYIFLVIALGFFSWWFALCMLLMLGVVVFLLPLVSVLVNGARQEKHKYAKNELYQTLTDNILGVSDWVFSQRGSEFVARYETDEANVRALDEKMKQFNRGRDFVLQLLFGVIAIAVLAWTSVRFPGNHGGAANWIGAFVLTVFPLIDAFAPLPAAAQETTIYKDSIRRFNELPEGEDDSTEAPVQPNGTSLSIEHLSFAYENQAKKVLNDLSLTIPEKQKLAILGRSGSGKSTLASLIRGDLRPTSGEILLGNIPTEAFGETMTEYIGVMHQAPYLFRTTILNNIRIGREEASEAEVWAVLEKVGLKEMVTQLPEGLQTMVDEAGLRFSGGERHRLALARILLQDTPIVLLDEPTTGLDPITEQQLLETFFEALKDKTVIWITHHLQGVTLMDQVIFIEDGQLEMSGTPEELLATNAHYQKLYRIDRGISSFEE
>LR134312.1|VEE96674.1|1677434_1678415_+|Heptaprenyl-diphosphate-synthase-component-II
MNTFWKSFPDVERSLTETCELIEQTLHTRNEDIEEALVTLARSGGKLLRPAFFFLFTQLGDEEKQEKQQLLKIAASLEILHMATLIHDDIIDDSPLRRGAVTIQSQYGKDVAVYTGDLLFTEFFTLIADAMNGSEFMKINAQGMKRLLLGELDQMSHRFDRRMSIPAYLRSVNGKTAELFSLSCLEGAYFGHSSKEVQRLAKRIGRHIGIAFQVYDDILDYTADTETLKKPALEDLSQGVYTLPLLFAYQAAPDVFSPYLDKGRAITLEEAAEVAALVNDYHGVTEAQAFAKKVTNKAITDIQQLPDGTAKETLLSLTELLLHRSF
>LR134312.1|VEE96672.1|1676407_1677313_-|UbiA-prenyltransferase-family-protein
MNREIFFELVELKAKTASVLPFLLGICFSWYQYGRLHVGYVLIFFIAMFIFNMAVDILDNYNDYHHATEVHDYKEKTNIIGRENLSLPLIRKMIFWMILVSALMGIGLSFIVGWPLLIMGLYCYLIGIFYSSGPKPLSSLPLGEVFSGFTMGFMITLICVYINTFEVFNWSAANLWGIFLVALPNTCYIANLMLANNICDLEEDENNKRYTLVHYLGKASSLKLFVGLNTIAMLAILLAVGLGLTPPTMLLMLLTLPFVRKQTQALLKEQVKSKTFVCAVKILAVGATAQVLFFAIGLWWL
>LR134312.1|VEE96670.1|1675167_1676379_-|pyridine-nucleotide-disulfide-oxidoreductase
MNKKHVVILGAGYAGLKTLRELQKGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEKITYNIMDVVDEKMTTFIQGTVKTIDAATQTVALEDGQTINYDYLVVSLGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTGIELLGSLVENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSGSHVVGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRALGIVGKTDIKGYPASFMKKIIMNKALFETGGTKEMMAKGRFDLYH
>LR134312.1|VEE96668.1|1672430_1674854_-|stage-III-sporulation-protein-E
MAQKRATNKKKSTTKKKTKKQQQQQERLNYMFLGLIFILFGVFGLFRLGFLGTLLANCLRLVVGNTFPFAAILLILYGLLVMIYGKDFPLKRGRPIFGAVLIYISVLLFFHAFMFRNVSGSQPDILGNTWEFLQSDLKANQVTQNVGGGMIGALLYQGTYFLVAQFGSYLIATLLLLAGIFLMSMWDFQQIVDHFQSIQDRLSHVSAKSQARQEEKEAKRAAKKEAKAAERQAKIEAAAQQKLQERERMEQAAAERLTKTPVETHQPMVEEPAAPTPVQIDSFQQQNQAMPVPPIAATKPQREQEEEAADEAGVLEFEIYEEAEDRDYQLPPTDLLDTIQATDQSGEYEKIEKNIGVLEQTFKSFGVDAKVVKASLGPSVTKFEVQPAVGVKVSKIVNLTDDIALALAAKDVRMEAPIPGKSLIGIEVPNSAISTVSFRDIVEAQPSHPDKLLEVPLGRDISGMVQTADLSKMPHLLIAGSTGSGKSVAINGIITGILMQAKPHEVKLMMIDPKMVELNVYNGIPHLLTPVVTNPRKAAQALQKVVQEMEFRYEKFAATGVRNITGYNQLIQQKNAEDGENRPILPFIVVIVDELADLMMVASNEVEDAIIRLAQMARAAGIHMILATQRPSVDVITGIIKANVPSRMAFAVSSGTDSRTIIDTNGAEKLLGRGDMLFLPMGENKPIRIQGAFISDQEVERVVAFVTDQQEAEYQESMMPTDEPTTSGGGEAPQDELFEEAKNLVVEMQTASISLLQRRFRIGYNRAARLVDELEAHGVIGPSEGSKPRKVFLQAESEEAATETPEQ
>LR134312.1|VEE96666.1|1671599_1672301_-|GntR-family-transcriptional-regulator
MRRKSVLYLEVADQIKEDILSGKYPVGTFLPTETELEEMFNVSKITIRRAIEMLATEEFVEKKSGRGTTVLSNRPYNKLSKAGTFTEFLNESGQKVTKKVLQVENLTLSKEMPAYQFLGEEVVHLSRLYLIDEQPYIYFNYYLPAAMKDVSLTEYKEESLYRLMDRHAIEIYKFEDRFEVATLTEAEQKMLQTTETTGLKRIRRSLSPTGRCVEYSEAIYNTKIHPYVIEYEA
>LR134312.1|VEE96664.1|1670732_1671482_-|ABC-transporter
MLEVQNLKKVYGNEIKYEALKGINLTVQDGEFIGIMGPSGSGKSTLLNLLATIDSPTDGEILLNGKNPNNLNQEQIAKFRRTELGFVFQSFNLMPTLTVEENIILPLTLDGEKVSVMKRQLAELSERLGINHLLKKRIAEISGGQAQRVAVARAMIHHPQLLLADEPTGNLDTKSSKDVMGLLQQLNEEEAATILMVTHDPLAASYCKRIVFIKDGELIDEIVQNGNQKEFYDLIMVKLAEIEGVDNEF
>LR134312.1|VEE96684.1|1686277_1687141_-|AraC-family-transcriptional-regulator
MLANLNQAMDYIEEHLTEEVSFDELAKKTGISVYHFKRTFSFITGMSLAEYIKKRRLAEANLALLAGEKVTDVAFKYGYQSIEGFSRAFRDWSGQAPSEVMKTQIQKTFPKFSFYIDIKGGQSMDVKLIEKPAFQIVGVSQKVPLQYQGENQAIMELAQRITPQQRAEMHTFDDIYPYQVVNASFDFQEGRTTEGGEMTHMIGFATSQENTYEDLEQLSVPAHTWAVFPNEGPFPQTLQETWARIFSEWLPSSGYQVVAAPEISFTQYQGPAEAKYSEIWLAVTATK
>LR134312.1|VEE96686.1|1687225_1689307_-|putative-DNA-topoisomerase
MVAKQLIIAEKPSVAKDLSRVLGANQKNKNYYEGPNVIVTWALGHLLGLKMPEDLNKEWQTWQMETLPMIPKNLGIKPLPKTGHQLKAIKQLANRKDVSEAVIATDAGREGELVARWILEYVRFNKPVKRLWISSQTDKAIKDGFKKIRPAKDYDNLYYSALARAKADWLVGLNVTRALTVKYQDNLSAGRVQTPTLAMVRQQEKTIEQFKPQTYFTISLTVESEKAKMTQKNPYALKERQEAEQLVKELSKQKGLVTDIQEKVKTENAPLPYDLTEIQREANQRFQFSAKKTLSLVQSLYETHKIVSYPRTDSKYLTTDMKGTMKERLQAIADFSPEVKGYLKNGAVVKQQKVFQNAKVTDHHGLIPTEQRPRYEKLSNDEQKIYQMIVQRFLGLFAEPNQTKQTKVTVAFGKETFVFHQNKVVVAGWKTTAEQPLSIVQWQKGMTVAPNFTINKELTSPPKPLTEGTLLGKMEKHSLGTPATRAEIIEKLIKSELMERTNSGLSVSAKGKQLLDLVNPSLVTPELTEKWEKSLEAIASGQQKSQLFLKDIEEDTKKLVREIKQSEKKYQDFSITQKKCPDCGSNLREKNTKDGKIYVCTNQECSYRRRKDPKVSNHRCPQCHKKMVIIEGKNGRSFKCKFCSITEKIPDKKERKQKMTKHEERRLMKKYSQPDEPEESALAQALKAAMNQE
>LR134312.1|VEE96688.1|1689437_1689803_-|DNA-binding-protein
MYQVITMYGDNEPWWFFDDWQEDIVQEKTFDNLTDAETYYVEVWQKLSQNYTYVNTKPNYLTAFWNDGEERWCEECDEDLQQYFGLALLENHHAVTFENKAEFTTISNHFGKTKFCKRKVI
>LR134312.1|VEE96690.1|1689900_1690470_-|Tetracycline-repressor-protein-class-B-from-transposon-Tn10
MAKKRNLTKAKILESARNLAEELGVQQLTFQNLAVDLGIKYPSLYNHFKNIAEVKNALVDLLIQELNDALRRALVGKSGAEAIRIYAETYQQFAFENSAVYELLISVPKTQNQQLIEGIHETNQIILQLLAFYPFNNEERLHKSRELRSLIHGYITLRFLGYFQREEATPEESYRRMIEDFIASLEVAG
>LR134312.1|VEE96692.1|1690602_1691118_+|Phosphatidylethanolamine-binding-protein
MHITNRSHLADRYGKRTSAEFLLHERPILSFPISLAAIPKEARYLSWELIDYDTIPLIGFPFIHWLAANVPVTNEIPEDFSRTALKPTIQGKNSLASPLGKQMIPALATETLPELTERYLGLSPRSGVHTYTLYVYATKNPLNLKEGFFANELHQALNDQLLAKAKFEFLY
>LR134312.1|VEE96694.1|1691134_1692373_+|multidrug-resistance-efflux-pump
MYELIKSKIFRPRQPWEKNLLVLWFGTFMAGIGFSLVMPFMPLYINTLGTFTHQQLNFWSGITFSSTFLVTTIVSPWWGRLADRKGRKLMLLRASLGMAIVISLMGAVTSVYQLIGLRLLQGVFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTLLGPLLGGVTASIFGYRPTFFITGTILLLVFVLSLVFVHEEFVPIEKNQAASGKQILKKLEHPHVILGMFITTLIIQASNNSISPIISLYIQQLLGGHGNVTLISGVIASIPGIATLIAAPRFGRLGDRIGSERILTIGLILAIFVYLPMAFVQNVWQLAMLRFLVGISDACLLPAVQTLITRYSPSDAAGRIFSYNQSFQATGNVIGPMIGSSVSAAFGYRGVFISTSCLVLINLLWVRRSTAELKKEKNDD
>LR134312.1|VEE96696.1|1692552_1693677_-|tRNA-specific-2-thiouridylase-MnmA
MADNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIADRAGLATAKKKDSTGVCFIGEKNFKEFLSNYLPAKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDTPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDGMECLGGGLIDRAYQDEKELQYV
>LR134312.1|VEE96698.1|1693902_1694247_-|cytosolic-protein
MAFTTTAAVEGSTVFYKVHPSAKRYTLKDNGFTETKSGNFQLIRSLDPTPQRNEGFKLKITITADLKELKMSITTANGLKPMNIFKNEQHEMSKEKYFFLMDGLISRGVLEKVE
>LR134312.1|VEE96700.1|1694314_1695460_-|aminotransferase-class-V-family-protein
MEPIYLDHAATTPLHPTVIQAMTENMQTTFGNPSSIHQFGRKAHGLLEEVRQTIAESLQAKPHEIIFNSGGTEGDNTAILAVAFSRQKEGKHIITTAIEHPAVLRTMEYLETLGFEVTYLPVNENGQISMDQFKKSLREETILVSMMYGNNEIGNRLPIAEVGAILKNHSAIFHTDAVQAYGSEVILPHELGIDLLSISAHKINGPKGVGFLFKSDAIQLPPLLHGGEQEEKRRAGTENLAGIIGMGTAVSLLTSAEKQARKTAYQSFQTIILKALEEANIDFSINGEPTNRLAHVLNLHLKGVPSDLLLMHLDLRGIAISTGSACTAGTVDPSHVLTAMYGENSSAIKESIRISFGYGNTPEEIATFSEVLVAVIQQLKK
>LR134312.1|VEE96702.1|1695616_1696591_-|ribose-phosphate-pyrophosphokinase
MTENYQDDTLRIFSLNANRPLAEKIAASVGTELGKSTVRQFSDGEIQINIEESIRGDHVYIIQATNAPVNDHLMELLILIDALKRASAKTINVILPYYGYARQDRTAKPREPITAKLVANMLVEAGATRLLTLDLHTVQVQGFFDIPVDNLFTMPLFAHYYRQQALVGEEIVIVSPKNSGVQRARSLSEYLDATLAIVDHEEIDGVRQEGYVIGNVAGKKCILVDDILNTGQTLATAAEVLMKNGAQEVYACASHGLLSEGAKATLENAPIKEISITDSVYTTTDRQPATLNIISCAELMGEALLRIHENKPMSPLFRLEPKGE

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Crispr_ID: LR134312_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134312_3

2545008-2545081

Orphan

Consensus_repeat	Method
ATAGTTGGCGAGCAACAGAAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134312_3

>merge|LR134312|3|2545008-2545081|CRISPRCasFinder
ATAGTTGGCGAGCAACAGAAAAACTCGATATAGAATTGGACGTAGAGCCAATAGTTGGTGAGCAACAGAAAAAC

>LR134312|3|3|2545008-2545081|CRISPRCasFinder
ATAGTTGGCGAGCAACAGAAAAAC	TCGATATAGAATTGGACGTAGAGCCA
ATAGTTGGTGAGCAACAGAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134312.1\|VEE98179.1\|2539197_2539905_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372694
LR134312.1\|VEE98204.1\|2555509_2557066_-\|RNA-binding-metal-dependent-phosphohydrolase	unknown	unknown	gnl\|CDD\|237177
LR134312.1\|VEE98175.1\|2538389_2538542_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372694
LR134312.1\|VEE98170.1\|2535125_2536430_-\|putative-zinc-dependent-peptidase	unknown	unknown	gnl\|CDD\|223685
LR134312.1\|VEE98194.1\|2548773_2549328_-\|Maf-family-protein	unknown	unknown	gnl\|CDD\|238310
LR134312.1\|VEE98198.1\|2551516_2554093_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
LR134312.1\|VEE98188.1\|2546468_2546594_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134312.1\|VEE98200.1\|2554093_2554465_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226923
LR134312.1\|VEE98186.1\|2545147_2545741_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|376232
LR134312.1\|VEE98182.1\|2541308_2544020_+\|Trehalose-6-phosphate-phosphorylase	unknown	unknown	gnl\|CDD\|224471
LR134312.1\|VEE98192.1\|2548203_2548641_-\|Peptide-methionine-sulfoxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
LR134312.1\|VEE98168.1\|2534091_2534958_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224343
LR134312.1\|VEE98190.1\|2547057_2548029_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
LR134312.1\|VEE98177.1\|2538493_2539102_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372694
LR134312.1\|VEE98180.1\|2540300_2541014_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274116
LR134312.1\|VEE98202.1\|2554552_2555350_-\|metallophosphoesterase,-MG_246/BB_0505-family	unknown	unknown	gnl\|CDD\|379099
LR134312.1\|VEE98184.1\|2544034_2544685_+\|HAD-superfamily-hydrolase	unknown	unknown	gnl\|CDD\|213672
LR134312.1\|VEE98171.1\|2536422_2537691_-\|Zn-dependent-peptidase	unknown	unknown	gnl\|CDD\|223685
LR134312.1\|VEE98173.1\|2537899_2538349_+\|large-conductance-mechanosensitive-channel	unknown	unknown	gnl\|CDD\|376605
LR134312.1\|VEE98196.1\|2549352_2551485_-\|DNA-mismatch-repair-protein	unknown	unknown	gnl\|CDD\|223400

Protein	Function_ID	Function_description	E-value
LR134312.1\|VEE98179.1\|2539197_2539905_-\|Uncharacterised-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	8.5135e-09
LR134312.1\|VEE98204.1\|2555509_2557066_-\|RNA-binding-metal-dependent-phosphohydrolase	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
LR134312.1\|VEE98175.1\|2538389_2538542_-\|Uncharacterised-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	0.00489772
LR134312.1\|VEE98170.1\|2535125_2536430_-\|putative-zinc-dependent-peptidase	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.18332e-85
LR134312.1\|VEE98194.1\|2548773_2549328_-\|Maf-family-protein	gnl\|CDD\|238310	cd00555, Maf, Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.	1.6551e-85
LR134312.1\|VEE98198.1\|2551516_2554093_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
LR134312.1\|VEE98200.1\|2554093_2554465_-\|membrane-protein	gnl\|CDD\|226923	COG4550, COG4550, Predicted membrane protein [Function unknown].	8.72333e-15
LR134312.1\|VEE98186.1\|2545147_2545741_+\|Uncharacterised-protein	gnl\|CDD\|376232	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4. A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine residue.	9.04196e-24
LR134312.1\|VEE98182.1\|2541308_2544020_+\|Trehalose-6-phosphate-phosphorylase	gnl\|CDD\|224471	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism].	2.05977e-174
LR134312.1\|VEE98192.1\|2548203_2548641_-\|Peptide-methionine-sulfoxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.48715e-93
LR134312.1\|VEE98168.1\|2534091_2534958_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	2.66641e-35
LR134312.1\|VEE98190.1\|2547057_2548029_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
LR134312.1\|VEE98177.1\|2538493_2539102_-\|Uncharacterised-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	8.97907e-12
LR134312.1\|VEE98180.1\|2540300_2541014_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|274116	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. [Regulatory functions, DNA interactions].	4.42567e-136
LR134312.1\|VEE98202.1\|2554552_2555350_-\|metallophosphoesterase,-MG_246/BB_0505-family	gnl\|CDD\|379099	pfam13277, YmdB, YmdB-like protein. This family of putative phosphoesterases contains the B. subtilis protein YmdB.	2.68643e-155
LR134312.1\|VEE98184.1\|2544034_2544685_+\|HAD-superfamily-hydrolase	gnl\|CDD\|213672	TIGR01990, bPGM, beta-phosphoglucomutase. This model represents the beta-phosphoglucomutase enzyme which catalyzes the interconverison of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha <-> beta) while the 1-phosphate is not. A separate enzyme is responsible for the isomerization of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorylysis of maltose (2.4.1.8), trehalose (2.4.1.64) or trehalose-6-phosphate (2.4.1.216). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterized by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold. beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily. The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes (TIGR01509). The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	4.36865e-106
LR134312.1\|VEE98171.1\|2536422_2537691_-\|Zn-dependent-peptidase	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.41239e-51
LR134312.1\|VEE98173.1\|2537899_2538349_+\|large-conductance-mechanosensitive-channel	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	2.8499e-49
LR134312.1\|VEE98196.1\|2549352_2551485_-\|DNA-mismatch-repair-protein	gnl\|CDD\|223400	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair].	0

>LR134312.1|VEE98184.1|2544034_2544685_+|HAD-superfamily-hydrolase
MTIGFIFDLDGVITDTAKFHYQAWKALADSLGIPIDETFNETLKGISRMDSLDRILAHGHRENAFTPAEKEALAQQKNDHYVQLLEHLTTEDVLPGVVPLLKQAQAQHIPCAVASASKNAPLILEKLGVCAYFATIVDPDSLSKGKPDPEIFLAAADSIGVLPQNAIGFEDAQSGIDGLKAAGIYAVGLSASQPLIGADMQVSEMTELSVDTLLNR
>LR134312.1|VEE98182.1|2541308_2544020_+|Trehalose-6-phosphate-phosphorylase
MTILELTFATNQLTTTFFNHKLEPLHQKTFPFEALTIEETVPELCQLIVAEAAPILGGIVADFPADFFSPEETLALVPQAVIQAFAEQLNTPLLTAAEQASAPNLLAAFEEKRQYLAWHLDYYGYVPGKNEYAVESLLTVGNGFLGLRGTTPEMTISDDHYPATYIAGLYNTAASEVAGQVVENEDFVNAPDNQHIALKIGDATDWLTISPDTLQQLHRQLNLKTGLFVAEMILKDADNQQIKLTTKKIANMAQPNDYHLQYTFEPLNFSAPITLKTVTDGSVYNYNVARYRNLTAKHFQVTALSAQENKTVIEVCTNQSNLSVRETALITGDFFEKEAITIQEEAEKIAQVVTVMAHQGTRYTLEKQVFVQASHAEQSWQVPFTPKDSFAAAAQESARAWQTLWQQANITVTGDLMSQKLLRIHSYHLLASASPFSNQAQALDVSITARGLHGEAYRGHIFWDEIFILPFYIQHYPDTAKQLLLYRYHRLEKAKENAAASQYRGAMYPWQSGRDGRETTQKLHLNPLNGHWGEDHSILQRHVSLAIAYNAWLYWHSTQDHEFMKQYGGEMLLEIAQFWNSAATLDDATGRFFIDKVMGPDEFHEGYPDQAESGLKNNAYTNLMVVWLFEELTNILALFSEEEQAQLFAKTQTTSADLARMQQIQNSLEIEVNSDGIIAQYEGYFGLKEIDWAAMKEKYGNIYRMDRILKAEGESPDDYKVAKQADTLMLFYNLDKTRVDQILEDLGYQLPADYLEKNLLYYLKRTSHGSTLSRIVHAQLAEMAQFHELSWQLYQEALYSDYRDIQGGTTAEGIHTGVMAATIHVTLATYAGVDTRQNELSICPNLPEHWQALAFQFIHQGVTYQFSLTQTSVTITADKDTQLLVQGALIPLTAERPKEVHYQ
>LR134312.1|VEE98180.1|2540300_2541014_-|GntR-family-transcriptional-regulator
MNKFHDIFLELEQQIVQGDYQPGDLLPSENQLVETYNVSRETIRKALNLLINAGYIQKKQGKGSIVLNFKKFNFPISGVTSYKELQQTQHIESHTHVVSLEEIPVERNLAQLTGWTEGAPVWRLVRQREIEGEVDILDIDYLIKEIVPELPEHRAEDSIFDYLENDLGLAISYAQKEITVEPLTEMDKQLIGEVEGNHVVVVRSIMNLEDTRCFGYTESRHRLNKFKFVEFARRRKL
>LR134312.1|VEE98179.1|2539197_2539905_-|Uncharacterised-protein
MKKKIMASLLVGSAVVGASLAPLSAQAVTTGNTPVQVEFGGGVLPDHEDNTGGTVDPDPTKPNTDFDLLAIPRSFDFPLAKINDDLSAIKANSMTYRALMVGDVRGTKEGWHVTGELMKMSNGTDELAGDINFGLQGYYARYITDLTQQPYYGLAATLNGVSIANDPTAPDFSGTSMKIGGGATTLMNATVGKGQGTWAGRFENMTLNVTTPMQELKKGAYTGVITWNLVAGPSI
>LR134312.1|VEE98177.1|2538493_2539102_-|Uncharacterised-protein
MKKKIMASLLAGSAVVGASLAPLSAQAVTTGNTPVQVELEGGTLPDGSGDPNTVDPDPEGSNGNFDLLLIPREFDFGKLSISDDLTQPIPNKKDDGFNGHVEAVGVGDLRGTKEGWHLTAQSDGMKLGNESLEGNITANITLYPLIYEVENNKYTIQDTNLLDPLTQPEVIANGRAWTLPLGGELFLWLTLLQEKAKGYGNL
>LR134312.1|VEE98175.1|2538389_2538542_-|Uncharacterised-protein
MANATTGKGQGLWEFVMFSSSLNITTPAYEIKAGNYTGNITWNLVAGPSI
>LR134312.1|VEE98173.1|2537899_2538349_+|large-conductance-mechanosensitive-channel
MIKEFKEFIMRGSVLDLAVGVVIGSAFTAIVTQVVEGLITPLISLIFVLTTGKKSADDALGALVYKVEGVEFNIGSVISALITFLITAFVLFLIVKAANKMKNRGKKEEAAEEEVVPTSEDYLKEIRDLLAAQTPPAETVKTDSTFTEK
>LR134312.1|VEE98171.1|2536422_2537691_-|Zn-dependent-peptidase
MSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKISELEIEQTKAMLKNQYILALDNAGAWLEKEYLNQLMPQTMLTAEEWISRINAVTIPEIQEVAKRLELQAIFFLEGETEND
>LR134312.1|VEE98170.1|2535125_2536430_-|putative-zinc-dependent-peptidase
MIKKDYAQIKETLYTETLENGLKVYLLPKNDFQKTYGLFTTDYGSIDNTFVPIGQEEMIEVPDGIAHFLEHKMFEKEDGDVFQKFGQQGASANAFTSFTKTSYLFSTTDQVTQNLETLLDFVQSPYFTKETVEKEKGIIGQEIQMYLDDPNWRLFFGILGNLYPKHPLHIDIAGTVASIAEITAEDLYTCYNTFYHPSNMTLFVVGKMDPEALMAFIRENQAAKEFPAAQPIRRHFPEETAADIVKESAIEMAVTRAKVLVGLKGLDEVPTTGRDLMKYQVIVNLLLQLLFGNTSQNYLALYDEGLLDDSFSYDFNLDRSFHFADIGGDSEQPEVLAERIEAILLSATTSPELTEENLSLLKKKMIGKYFQSLNSLEYIANQFSQSLFGETTLFDKIEVIESIQLADVRQVAETLIREEGLSRFYMYPKGETEQ
>LR134312.1|VEE98168.1|2534091_2534958_-|XRE-family-transcriptional-regulator
MASVNIGETLKEARLQKNISIDELQQMTKIQKRYLEIIEQNDFESLPGTFYVRAFIRQYASAVGLDGNQLVDIYDGKEPAIVEEPKPVYEELEGSRKQLHDEEKQSSWLLRNLPAIAFSLIGLAIAVVVLYIMWQDQKAEPIIQTPATSASVEKPKESSQAPESSTQSSTPPSSSSEPEKKTAVAVVSDANNQVTATVKDANSPINITFKGTEGSCWIGVMVDGNYTYQHTLQAGETQTTALPANAANATLILGASNNVAIQVDGADLTLEKTPVLIRKDVTLGITYR
>LR134312.1|VEE98186.1|2545147_2545741_+|Uncharacterised-protein
MIEKKDFDTIRKAFLIYDTNFNNHMFTYTYQHRKTKKLLEMNVQFEAGNFMHLCGVDYYQIDKQGSCKFRFKATQFYRALKNNKVSLRGIKPKDDGTTGQKLQVIPLLEMLISPGVRVCDGGKFYNLQYEKAIRSGKMIVALTCKENNKKYVPQSLLSLINQPRKSQSKSLTESHEVIKISKSELNSTSVIEVYDKF
>LR134312.1|VEE98188.1|2546468_2546594_-|Uncharacterised-protein
MKKITERPIVKILIKILMFALCFYAGIKFVDFIFPLVGFKQ
>LR134312.1|VEE98190.1|2547057_2548029_-|ribose-phosphate-pyrophosphokinase
MSKHYFDPRLKIFSLNSNRPLAEKIADAVGVELGKCSVTQFSDGEIQVNIEESIRGAHVYVIQSTSSPVNDNLMELLIMIDALKRASAKTINVVMPYYGYARQDRKARAREPITAKLVANMIEKAGATRMLTLDLHAVQIQGFFDIPVDHLMGAPLIADYFIEHGIQGDDVVVVSPDHGGVTRARKLAEFLKAPIAIIDKRRPKANVAEVMNIIGHVEGKTCVLIDDMIDTAGTISLAANALKEAGAKDVYASCTHPVLSGPALQRIEDSAIERLVVTDSIYLSDDRKIAKIDEVSVGELIGDAIKRIHENKPVSPLFETKNK
>LR134312.1|VEE98192.1|2548203_2548641_-|Peptide-methionine-sulfoxide-reductase-MsrB
MTKPTEEELKQTLTDLQYAVTQENATERPFSGEYDDFYQDGIYVDIVSGEPLFSSLDKYDAGCGWPSFTKPIEKRGVKEKADFSHGMHRVEVRSQEADSHLGHVFTDGPLQEGGLRYCINAAALRFVPVADLEKEGYGEYLSLFK
>LR134312.1|VEE98194.1|2548773_2549328_-|Maf-family-protein
MQIILASQSPRRQELLKRVVPTFTIAPADIDETVGKDGLPAEYVAQMAAQKAAAIAEQSPEALVIGCDTIVALAGEILGKPTSREDGYRMLRLLSGKTHDVYTSVTLKQGEKERSATVHSTVTFYPLTDTEIHAYLDTAEYADKAGAYGIQGQGALLIEAIAGDYYAIMGLPIAKVARLLKEFN
>LR134312.1|VEE98196.1|2549352_2551485_-|DNA-mismatch-repair-protein
MGKIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGEGIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGSYVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSHPKVAFRLVHDGHKMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSLPEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNVHPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLRFKKKLPPEPKAEQMEIPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAPPVPESTSVAEETSAYETSSAAVDSENHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPEFDANSATSQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQERIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFIVRAHPTWYPAGEEESIVREMIDMLLTTGSVSVKKFREATAIMMSCKRSIKANHYLNEQQARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKRIQDPH
>LR134312.1|VEE98198.1|2551516_2554093_-|DNA-mismatch-repair-protein-MutS
MPQKTKNTPMMEQYLSIKAQYKDAFLFYRLGDFYELFYEDAINAAQILELTLTSRNRNADDPIPMCGVPYHAAQGYIDTLIEQGYKVAICEQVEDPKTTKGMVKREVVQLVTPGTVMNSKGLEAKDNNYLTAVLTDGNQFGFAYVDLSTGELKTAVLADEEGVLNEASALQTKEMVLGSGIPESLKENLSLRLNIIFSTQETVEENAEFSFLTNELINPLEIEITGKLLSYLSVTQKRSLSHIQKAVEYQPDHFLKMDHYSKFNLELSQSIRTGQKKGTLLWLLDETKTAMGGRLLKQWLDRPLIQERQIKARQEMVQSLLNAYFERLDLQAALTNVYDLERLAGRVAFGSVNGRDLIQLRTSLEQVPTIRQLIVGINQGEWDDLLVDLNPVEDLVALIATAINEEAPLQITEGNVIKDGYNDQLDEYRDAMRNGKQWLAELEAKERQETGIKNLKIGYNRVFGYFIEITKSNLANLEEGKYERKQTLANAERFITPELKELERLILEAEEKSVELEYQLFLAVREQVKTNIDRLQTLAKTISAVDVLQSFATISERYQYVRPTLRSNTKNLAIVEGRHPVVEKVLGHQEYIPNSIRMNPETDILLITGPNMSGKSTYMRQLALTVVMAQIGCFVPAESAEMPIFDQIFTRIGASDDLIAGQSTFMVEMMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHREVQAKTLFSTHYHELTVLDETLKGLKNIHVGAVEKDGEVVFLHKMMEGPADKSYGIHVAKIAGLPSPLLERAATILSALEAEETTIPSSVHHEEVSEVHEETEQLSLFKEVSTEELSVIDTLKKMNLLEMTPLDALNMLHQLQKRI
>LR134312.1|VEE98200.1|2554093_2554465_-|membrane-protein
MEPLNLDAQSNKELEKLLHLIGQDEVIQRYQAIEEKVKKNKKLTELVEEIKAAQKDAVQFAHYGKPTAEKEAIQRADAKTKEFDEHPLVVAYREQLIEANDLVQHVTALIQYRVNEELEKEGN
>LR134312.1|VEE98202.1|2554552_2555350_-|metallophosphoesterase,-MG_246/BB_0505-family
MRILFIGDVVGSLGREALATYVPKLKKKYRPQVTIANGENAASGRGITGKIYKKFLQDGVDVVTMGNHTWDNKDIFEFIDDAKKMVRPANFPEDVPGQGMVFVKVNQLELAVINLQARTFMVPLEDPFKKAAELVAIARKRTPLIFVDFHGETTSEKQAMSWFLDGQVSAVVGTHTHVQTNDARILPKGTAFLSDVGMTGPYDGILGMKREPIIEKFMTALPKRFEVVETGRTILSACILEIDDQTGQAKMIEPIQISEDRPFQE
>LR134312.1|VEE98204.1|2555509_2557066_-|RNA-binding-metal-dependent-phosphohydrolase
MVLNILLAIVGLIVGLGLGFVIAKSRHDKAINGAKISASSILENARKESETLKKEALLEAKEENQKYRSEIESELKESRLELKSQENRLIQREQTLDRKDDSLEKREGSLEEKEEKLGARQQLIDEREKEVENLINQQHQELERIASLSKEEAKSIIMKSTEEELNHELTLMVKESEQRAKEESDRKAKNLLSLAIQRCAADSVSETTVSVVTLPNDEMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVVLSGFDPIRREIARMTLEKLIQDGRIHPARIEEMVEKSRKEMDERIREYGEQAAFEVGAHTLHPDLIKILGRLRFRTSYGQNVLNHSIEVAKLAGVLAAELGEDVQLAKRAGLLHDIGKALDHEIEGSHVEIGAELAAKYKENSVVINAIASHHGDVEATSVISVLVAAADALSAARPGARSESLENYIRRLENLENISNSFEGVDSSFAVQAGREVRVMVKPEEISDLESVRLVRDIRKKIEDDLDYPGHIKVTVIRETRAVDYAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134312_2	2.3\|1684999\|30\|LR134312\|CRISPRCasFinder,CRT	1684999-1685028	30	KJ608188	Enterococcus phage EFC-1, complete genome	30144-30173	0	1.0
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	NC_041959	Enterococcus phage IME-EF1, complete genome	28638-28667	0	1.0
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	CAJDJX010000002	Enterococcus phage Q69 genome assembly, contig: phageQ69-genome, whole genome shotgun sequence	26740-26769	0	1.0
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	MH375074	Enterococcus phage LY0323, complete genome	16135-16164	0	1.0
LR134312_2	2.15\|1685791\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685791-1685820	30	NC_029026	Enterococcus phage EFLK1, complete genome	29979-30008	0	1.0
LR134312_2	2.19\|1686055\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1686055-1686084	30	MK721199	Enterococcus phage vB_EfaS_Ef5.1, complete genome	33183-33212	0	1.0
LR134312_2	2.19\|1686055\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1686055-1686084	30	LT615366	Enterococcus phage VPE25 genome assembly, chromosome: VPE25	55150-55179	0	1.0
LR134312_2	2.19\|1686055\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1686055-1686084	30	NC_042023	Enterococcus phage phiSHEF5, complete genome	8062-8091	0	1.0
LR134312_2	2.19\|1686055\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1686055-1686084	30	LT546030	Enterococcus phage VPE25 genome assembly, chromosome: I	55150-55179	0	1.0
LR134312_2	2.19\|1686055\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1686055-1686084	30	MK982307	Enterococcus phage MSF2, complete genome	39023-39052	0	1.0
LR134312_2	2.19\|1686055\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1686055-1686084	30	JX193904	Enterococcus phage EfaCPT1, complete genome	31600-31629	0	1.0
LR134312_2	2.19\|1686055\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1686055-1686084	30	KJ127304	Enterococcus phage AUEF3, partial genome	24995-25024	0	1.0
LR134312_2	2.3\|1684999\|30\|LR134312\|CRISPRCasFinder,CRT	1684999-1685028	30	GQ452243	Enterococcus phage phiEf11, complete genome	13775-13804	1	0.967
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	GQ478087	Enterococcus phage phiFL3B, complete genome	15216-15245	1	0.967
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	NC_013648	Enterococcus phage phiFL3A, complete genome	14910-14939	1	0.967
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	NC_028671	Enterococcus phage vB_EfaS_IME197, complete genome	38841-38870	1	0.967
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	LC547238	Entercoccus phage phiM1EF2 DNA, nearly complete genome	15715-15744	1	0.967
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	KY303907	Enterococcus phage EF-P29, complete genome	14026-14055	1	0.967
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	NC_041960	Enterococcus phage SAP6, complete genome	30623-30652	1	0.967
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	KY472224	Enterococcus phage EF-P10, complete genome	10919-10948	1	0.967
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	KJ127303	Enterococcus phage VD13, complete genome	39545-39574	1	0.967
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	MK721194	Enterococcus phage vB_EfaS_Ef7.1, complete genome	40322-40351	1	0.967
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	NC_029016	Enterococcus phage vB_EfaS_IME198, complete genome	46431-46460	1	0.967
LR134312_2	2.9\|1685395\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685395-1685424	30	GQ452243	Enterococcus phage phiEf11, complete genome	16674-16703	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	MH355583	Enterococcus phage vB_EfaS_LM99, complete genome	23602-23631	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	MK360024	Enterococcus phage vB_EfaS_Max, complete genome	25048-25077	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	MK721190	Enterococcus phage vB_EfaS_Ef6.4, complete genome	23595-23624	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	NC_042101	Enterococcus phage PMBT2, complete genome	24569-24598	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	MH203383	Ecterococcus phage vB_EfaS_AL3, complete genome	25202-25231	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	NC_042022	Enterococcus phage phiSHEF4, complete genome	17620-17649	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	MT520979	Enterococcus phage vB_EfaS-271, complete genome	25511-25540	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	NC_042126	Enterococcus phage vB_EfaS_AL3, complete genome	25202-25231	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	NC_042023	Enterococcus phage phiSHEF5, complete genome	17630-17659	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	NC_042127	Enterococcus phage vB_EfaS_AL2, complete genome	15829-15858	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	MH193369	Enterococcus phage LY0322, complete genome	15582-15611	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	NC_031260	Enterococcus phage Ec-ZZ2, complete genome	5985-6014	1	0.967
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	KF733017	Enterococcus phage IME-EF4, complete genome	16485-16514	1	0.967
LR134312_2	2.13\|1685659\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685659-1685688	30	CAJDKF010000002	Enterococcus phage vB_EfaS_159 genome assembly, contig: phage159-genome, whole genome shotgun sequence	25809-25838	1	0.967
LR134312_2	2.15\|1685791\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685791-1685820	30	MK268686	Enterococcus phage vB_EfaH_EF1TV, complete genome	136891-136920	1	0.967
LR134312_2	2.15\|1685791\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685791-1685820	30	HE962497	Streptococcus phage SP-QS1 complete genome	49897-49926	1	0.967
LR134312_2	2.15\|1685791\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685791-1685820	30	AP018714	Enterococcus phage phiEF17H DNA, complete sequence	103526-103555	1	0.967
LR134312_2	2.3\|1684999\|30\|LR134312\|CRISPRCasFinder,CRT	1684999-1685028	30	NC_028671	Enterococcus phage vB_EfaS_IME197, complete genome	12684-12713	2	0.933
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	MK570225	Enterococcus phage vB_EfaS_PHB08, complete genome	13198-13227	2	0.933
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	HE962497	Streptococcus phage SP-QS1 complete genome	36366-36395	2	0.933
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	MK721199	Enterococcus phage vB_EfaS_Ef5.1, complete genome	27694-27723	2	0.933
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	MK360024	Enterococcus phage vB_EfaS_Max, complete genome	29384-29413	2	0.933
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	MK721190	Enterococcus phage vB_EfaS_Ef6.4, complete genome	27466-27495	2	0.933
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	NC_042101	Enterococcus phage PMBT2, complete genome	28620-28649	2	0.933
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	MK721200	Enterococcus phage vB_EfaS_Ef5.3, complete genome	27986-28015	2	0.933
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	NC_042022	Enterococcus phage phiSHEF4, complete genome	22387-22416	2	0.933
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	CAJDKF010000002	Enterococcus phage vB_EfaS_159 genome assembly, contig: phage159-genome, whole genome shotgun sequence	31683-31712	2	0.933
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	MK721186	Enterococcus phage vB_EfaS_Ef5.2, complete genome	28178-28207	2	0.933
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	KF728385	Enterococcus phage IME_EF3, complete genome	25125-25154	2	0.933
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	KX284704	Enterococcus phage SANTOR1, complete genome	21723-21752	2	0.933
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	MK721187	Enterococcus phage vB_EfaS_Ef6.1, complete genome	23605-23634	2	0.933
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	MG264739	UNVERIFIED: Enterococcus phage phiNASRA1, complete genome	4850-4879	2	0.933
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	MH618488	Enterococcus phage vB_EfaS_HEf13, complete genome	10754-10783	3	0.9
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	MH791415	UNVERIFIED: Enterococcus phage EfsWh-1, complete genome	46155-46184	3	0.9
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	NC_018086	Enterococcus phage BC-611, complete genome	40954-40983	3	0.9
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	AB712291	Enterococcus phage BC-611 DNA, complete genome	40954-40983	3	0.9
LR134312_2	2.7\|1685263\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685263-1685292	30	MN871443	UNVERIFIED: Enterococcus phage EfsWh_1, complete genome	46155-46184	3	0.9
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	NC_042023	Enterococcus phage phiSHEF5, complete genome	13583-13612	3	0.9
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	MH355583	Enterococcus phage vB_EfaS_LM99, complete genome	27560-27589	3	0.9
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	MT119359	Enterococcus phage heks, complete genome	32291-32320	3	0.9
LR134312_2	2.11\|1685527\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685527-1685556	30	MT520979	Enterococcus phage vB_EfaS-271, complete genome	29474-29503	3	0.9
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MN694811	Marine virus AFVG_250M587, complete genome	3030-3059	4	0.867
LR134312_2	2.19\|1686055\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1686055-1686084	30	MT119359	Enterococcus phage heks, complete genome	37873-37902	4	0.867
LR134312_2	2.19\|1686055\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1686055-1686084	30	MK125140	Enterococcus phage Nonaheksakonda, complete genome	33778-33807	4	0.867
LR134312_2	2.1\|1684867\|30\|LR134312\|CRISPRCasFinder,CRT	1684867-1684896	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	726854-726883	5	0.833
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MT254578	Bacillus phage Izhevsk, complete genome	21557-21586	5	0.833
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MW084976	Bacillus phage Kirov, complete genome	142050-142079	5	0.833
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP040855	Lactobacillus johnsonii strain G2A plasmid unnamed1	91852-91881	5	0.833
LR134312_2	2.19\|1686055\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1686055-1686084	30	KF728385	Enterococcus phage IME_EF3, complete genome	34665-34694	5	0.833
LR134312_1	1.8\|441022\|30\|LR134312\|CRISPRCasFinder,CRT	441022-441051	30	MK867354	Synechococcus phage S-SCSM1, complete genome	151260-151289	6	0.8
LR134312_2	2.1\|1684867\|30\|LR134312\|CRISPRCasFinder,CRT	1684867-1684896	30	NC_019526	Enterobacteria phage vB_KleM-RaK2, complete genome	41998-42027	6	0.8
LR134312_2	2.1\|1684867\|30\|LR134312\|CRISPRCasFinder,CRT	1684867-1684896	30	MT708547	Klebsiella phage Muenster, complete genome	164106-164135	6	0.8
LR134312_2	2.1\|1684867\|30\|LR134312\|CRISPRCasFinder,CRT	1684867-1684896	30	AB897757	Klebsiella phage K64-1 DNA, complete genome	42006-42035	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KT337346	Streptococcus phage phiARI0285-2, partial genome	22218-22247	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KX550065	Streptococcus phage SpGS-1, complete genome	16056-16085	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KY065502	Streptococcus phage IPP66, complete genome	15048-15077	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KY065479	Streptococcus phage IPP39, complete genome	14496-14525	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KT337348	Streptococcus phage phiARI0378, partial genome	22214-22243	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KY065455	Streptococcus phage IPP14, complete genome	15308-15337	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KT337364	Streptococcus phage phiARI0639b, partial genome	16285-16314	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KY065487	Streptococcus phage IPP48, complete genome	15236-15265	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KT337358	Streptococcus phage phiARI0468-4, complete genome	21857-21886	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KY065501	Streptococcus phage IPP65, complete genome	15610-15639	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KY065493	Streptococcus phage IPP55, complete genome	14728-14757	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KY065491	Streptococcus phage IPP53, complete genome	15404-15433	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	DQ113772	Streptococcus pneumoniae bacteriophage MM1 1998, complete genome	16108-16137	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KY065490	Streptococcus phage IPP52, complete genome	15102-15131	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	KY065492	Streptococcus phage IPP54, complete genome	16912-16941	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	AJ302074	Streptococcus pneumoniae bacteriophage MM1 complete genome	16051-16080	6	0.8
LR134312_2	2.4\|1685065\|30\|LR134312\|CRISPRCasFinder,CRT	1685065-1685094	30	NC_022791	Streptococcus phage phiBHN167 complete genome	16291-16320	6	0.8
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_LR217721	Candidatus Erwinia haradaeae strain ErCilaricifoliae isolate 3058 plasmid pBioThi	2978-3007	6	0.8
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NC_010371	Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence	100590-100619	6	0.8
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	265153-265182	6	0.8
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP049194	Enterobacter hormaechei strain Y2152 plasmid pDC2152-6, complete sequence	4350-4379	6	0.8
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP049190	Enterobacter hormaechei strain Y323 plasmid pY323-2, complete sequence	4425-4454	6	0.8
LR134312_1	1.1\|440560\|30\|LR134312\|PILER-CR,CRISPRCasFinder,CRT	440560-440589	30	NZ_AP018682	Vibrio casei strain DSM 22364 plasmid 1, complete sequence	127880-127909	7	0.767
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MT446400	UNVERIFIED: Escherichia virus TH26, complete genome	21251-21280	7	0.767
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MT446399	UNVERIFIED: Escherichia virus TH25, complete genome	22343-22372	7	0.767
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	NC_048845	Escherichia phage flopper, complete genome	32751-32780	7	0.767
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MT446409	UNVERIFIED: Escherichia virus TH37, complete genome	23898-23927	7	0.767
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MT446419	UNVERIFIED: Escherichia virus TH53, complete genome	30879-30908	7	0.767
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MN117721	Escherichia phage vB_EcoP_Bp7, complete genome	30692-30721	7	0.767
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MN122072	Escherichia phage vB_EcoM_Bp10, complete genome	9018-9047	7	0.767
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	NC_010106	Enterobacteria phage phiEcoM-GJ1, complete genome	31648-31677	7	0.767
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MF044458	Escherichia phage ST32, complete genome	31809-31838	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MH221129	Salmonella phage SPAsTU, complete genome	11431-11460	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MH221128	Salmonella phage STsAS, complete genome	82996-83025	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	42050-42079	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	37778-37807	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP024774	Bacillus thuringiensis LM1212 plasmid pLM3, complete sequence	23565-23594	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	133566-133595	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	129294-129323	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP021437	Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence	46367-46396	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP021437	Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence	148866-148895	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP021437	Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence	17851-17880	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP021437	Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence	67690-67719	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NC_017414	Borreliella burgdorferi N40 plasmid N40_lp36, complete sequence	20232-20261	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP024772	Bacillus thuringiensis LM1212 plasmid pLM1, complete sequence	121890-121919	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP041074	Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence	46155-46184	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP041074	Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence	99173-99202	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MN692994	Marine virus AFVG_117M61, complete genome	60772-60801	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MN693508	Marine virus AFVG_25M1, complete genome	8188-8217	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NC_027402	Salmonella phage SPN3US, complete genome	115263-115292	7	0.767
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NC_007823	Coliphage NC28, complete genome	4845-4874	7	0.767
LR134312_2	2.10\|1685461\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685461-1685490	30	AY954949	Bacteriophage 66, complete genome	1161-1190	7	0.767
LR134312_2	2.10\|1685461\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685461-1685490	30	NC_007046	Staphylococcus phage 66, complete genome	1161-1190	7	0.767
LR134312_2	2.10\|1685461\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685461-1685490	30	AF513032	Staphylococcus phage phi44AHJD, complete genome	15580-15609	7	0.767
LR134312_2	2.10\|1685461\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685461-1685490	30	NC_004678	Staphylococcus phage 44AHJD, complete genome	15580-15609	7	0.767
LR134312_2	2.10\|1685461\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685461-1685490	30	NC_004679	Staphylococcus phage phiP68, complete genome	17020-17049	7	0.767
LR134312_2	2.10\|1685461\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685461-1685490	30	NC_031008	Staphylococcus phage SLPW, complete genome	16561-16590	7	0.767
LR134312_2	2.10\|1685461\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685461-1685490	30	AF513033	Staphylococcus aureus phage phiP68, complete genome	17020-17049	7	0.767
LR134312_2	2.10\|1685461\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685461-1685490	30	NC_048107	Staphylococcus phage Pabna, complete genome	16620-16649	7	0.767
LR134312_2	2.13\|1685659\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685659-1685688	30	NZ_CP046008	Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence	85487-85516	7	0.767
LR134312_2	2.13\|1685659\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685659-1685688	30	NZ_CP046005	Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence	66053-66082	7	0.767
LR134312_2	2.16\|1685857\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685857-1685886	30	AJ629110	Oenococcus oeni bacteriophage fOg30 ORF167, ORF432, ORF163, ORF380, ORF424, ORF217, ORF252, ORF80, ORF161, ORF364 and ORF58	9430-9459	7	0.767
LR134312_1	1.3\|440692\|30\|LR134312\|PILER-CR,CRISPRCasFinder,CRT	440692-440721	30	MH617137	Microviridae sp. isolate ctbe610, complete genome	630-659	8	0.733
LR134312_1	1.7\|440956\|30\|LR134312\|PILER-CR,CRISPRCasFinder,CRT	440956-440985	30	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	690478-690507	8	0.733
LR134312_1	1.7\|440956\|30\|LR134312\|PILER-CR,CRISPRCasFinder,CRT	440956-440985	30	NZ_CP045361	Roseivivax sp. THAF40 plasmid pTHAF40_a, complete sequence	103642-103671	8	0.733
LR134312_1	1.7\|440956\|30\|LR134312\|PILER-CR,CRISPRCasFinder,CRT	440956-440985	30	NZ_CP045319	Roseivivax sp. THAF197b plasmid pTHAF197b_a, complete sequence	226475-226504	8	0.733
LR134312_2	2.2\|1684933\|30\|LR134312\|CRISPRCasFinder,CRT	1684933-1684962	30	NC_009453	Arthrobacter sp. Rue61a plasmid pAL1, complete sequence	17952-17981	8	0.733
LR134312_2	2.3\|1684999\|30\|LR134312\|CRISPRCasFinder,CRT	1684999-1685028	30	NC_019909	Yersinia phage phiR1-RT complete genome	47802-47831	8	0.733
LR134312_2	2.3\|1684999\|30\|LR134312\|CRISPRCasFinder,CRT	1684999-1685028	30	NC_028820	Yersinia phage vB_YenM_TG1, complete genome	45246-45275	8	0.733
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MT446403	UNVERIFIED: Escherichia virus TH29, complete genome	33795-33824	8	0.733
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MT446406	UNVERIFIED: Escherichia virus TH33, complete genome	47991-48020	8	0.733
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MT446402	UNVERIFIED: Escherichia virus TH28, complete genome	4117-4146	8	0.733
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MT446397	UNVERIFIED: Escherichia virus TH23, complete genome	22645-22674	8	0.733
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	251971-252000	8	0.733
LR134312_2	2.5\|1685131\|30\|LR134312\|CRISPRCasFinder,CRT	1685131-1685160	30	MT446398	UNVERIFIED: Escherichia virus TH24, complete genome	5177-5206	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1608225-1608254	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP014118	Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed1, complete sequence	15920-15949	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MN940411	Staphylococcus phage f2b1, partial genome	143294-143323	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MN693728	Marine virus AFVG_250M561, complete genome	19773-19802	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	HG796790	Uncultured bacterium plasmid pRGF00033	21-50	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MN693898	Marine virus AFVG_250M937, complete genome	28712-28741	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NC_041918	Geobacillus phage TP-84, complete genome	9924-9953	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MT408532	Synechococcus phage SynMITS9220M01, complete genome	186021-186050	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP028726	Enterococcus faecalis strain CVM N60443F plasmid pN60443F-1, complete sequence	36016-36045	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP045289	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence	3021-3050	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP045289	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence	4727-4756	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP045289	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence	17266-17295	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	JQ680350	Unidentified phage clone 1013_scaffold47 genomic sequence	20037-20066	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NC_019485	Enterobacter phage EcP1, complete genome	41111-41140	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MT679221	Proteus phage 7, complete genome	116131-116160	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MT799840	Salmonella phage JN03, complete genome	117752-117781	8	0.733
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	LR535912	XXX	125268-125297	8	0.733
LR134312_2	2.8\|1685329\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685329-1685358	30	MT446422	UNVERIFIED: Escherichia virus TH57, complete genome	168398-168427	8	0.733
LR134312_2	2.8\|1685329\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685329-1685358	30	MT446420	UNVERIFIED: Escherichia virus TH54, complete genome	38945-38974	8	0.733
LR134312_2	2.8\|1685329\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685329-1685358	30	GQ981382	Shigella phage SP18, complete genome	151892-151921	8	0.733
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	MN856015	Myoviridae sp. isolate 136, complete genome	212-241	8	0.733
LR134312_1	1.7\|440956\|30\|LR134312\|PILER-CR,CRISPRCasFinder,CRT	440956-440985	30	NZ_CP042333	Bosea sp. F3-2 plasmid pB32-2, complete sequence	30149-30178	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MK415405	Phage FAKO05_000032F, complete genome	80666-80695	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	LC499744	Enterococcus faecalis S7316 plasmid pS7316optrA DNA, complete sequence	38454-38483	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_MK439959	Escherichia coli strain Ec-2Lar plasmid pC-Ec2-KPC, complete sequence	46534-46563	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP035095	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed1, complete sequence	294737-294766	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_KX579977	Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence	43329-43358	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	208211-208240	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP045289	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence	10602-10631	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	NZ_CP009921	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_2, complete sequence	182211-182240	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MK784778	Enterococcus faecalis strain E508 plasmid pE508-2, complete sequence	73890-73919	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MN693573	Marine virus AFVG_25M441, complete genome	36111-36140	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	KU686209	Synechococcus phage S-CAM22 isolate 1209TA19, complete genome	162540-162569	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	KU686208	Synechococcus phage S-CAM22 isolate 0310NB44, complete genome	162590-162619	9	0.7
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	KU686207	Synechococcus phage S-CAM22 isolate 0210CC35, complete genome	162425-162454	9	0.7
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	KX229736	Campylobacter phage PC5, complete genome	98580-98609	9	0.7
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	NC_042112	Campylobacter phage CP81, complete genome	124448-124477	9	0.7
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	KX879627	Campylobacter phage vB_CjeM_Los1, complete genome	1399-1428	9	0.7
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	KF148616	Campylobacter phage CP8, complete genome	4232-4261	9	0.7
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	NC_016562	Campylobacter phage CPX, complete genome	3999-4028	9	0.7
LR134312_2	2.12\|1685593\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685593-1685622	30	JX569801	Campylobacter phage CP30A, complete genome	51413-51442	9	0.7
LR134312_2	2.16\|1685857\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685857-1685886	30	MF351863	Synechococcus phage Bellamy, complete genome	68935-68964	9	0.7
LR134312_1	1.2\|440626\|30\|LR134312\|PILER-CR,CRISPRCasFinder,CRT	440626-440655	30	KJ018210	Flavobacterium sp. phage 1/32, complete genome	10693-10722	10	0.667
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	MH598800	Pelagibacter phage HTVC031P, complete genome	13812-13841	10	0.667
LR134312_2	2.6\|1685197\|30\|LR134312\|CRISPRCasFinder,CRT,PILER-CR	1685197-1685226	30	HG796278	Uncultured bacterium plasmid pRGI00192	2968-2997	10	0.667

1. spacer 2.3|1684999|30|LR134312|CRISPRCasFinder,CRT matches to KJ608188 (Enterococcus phage EFC-1, complete genome) position: , mismatch: 0, identity: 1.0

tttgataatccagaatcaacatcttcacca	CRISPR spacer
tttgataatccagaatcaacatcttcacca	Protospacer
******************************

2. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_041959 (Enterococcus phage IME-EF1, complete genome) position: , mismatch: 0, identity: 1.0

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tacgagctcccaacatacgttgacggtgca	Protospacer
******************************

3. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to CAJDJX010000002 (Enterococcus phage Q69 genome assembly, contig: phageQ69-genome, whole genome shotgun sequence) position: , mismatch: 0, identity: 1.0

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgattgttca	Protospacer
******************************

4. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MH375074 (Enterococcus phage LY0323, complete genome) position: , mismatch: 0, identity: 1.0

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgattgttca	Protospacer
******************************

5. spacer 2.15|1685791|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_029026 (Enterococcus phage EFLK1, complete genome) position: , mismatch: 0, identity: 1.0

ccgtaaactctcggacgtgactcaatataa	CRISPR spacer
ccgtaaactctcggacgtgactcaatataa	Protospacer
******************************

6. spacer 2.19|1686055|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK721199 (Enterococcus phage vB_EfaS_Ef5.1, complete genome) position: , mismatch: 0, identity: 1.0

attctctgtcacattccattagttccatgt	CRISPR spacer
attctctgtcacattccattagttccatgt	Protospacer
******************************

7. spacer 2.19|1686055|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to LT615366 (Enterococcus phage VPE25 genome assembly, chromosome: VPE25) position: , mismatch: 0, identity: 1.0

attctctgtcacattccattagttccatgt	CRISPR spacer
attctctgtcacattccattagttccatgt	Protospacer
******************************

8. spacer 2.19|1686055|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_042023 (Enterococcus phage phiSHEF5, complete genome) position: , mismatch: 0, identity: 1.0

attctctgtcacattccattagttccatgt	CRISPR spacer
attctctgtcacattccattagttccatgt	Protospacer
******************************

9. spacer 2.19|1686055|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to LT546030 (Enterococcus phage VPE25 genome assembly, chromosome: I) position: , mismatch: 0, identity: 1.0

attctctgtcacattccattagttccatgt	CRISPR spacer
attctctgtcacattccattagttccatgt	Protospacer
******************************

10. spacer 2.19|1686055|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK982307 (Enterococcus phage MSF2, complete genome) position: , mismatch: 0, identity: 1.0

attctctgtcacattccattagttccatgt	CRISPR spacer
attctctgtcacattccattagttccatgt	Protospacer
******************************

11. spacer 2.19|1686055|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to JX193904 (Enterococcus phage EfaCPT1, complete genome) position: , mismatch: 0, identity: 1.0

attctctgtcacattccattagttccatgt	CRISPR spacer
attctctgtcacattccattagttccatgt	Protospacer
******************************

12. spacer 2.19|1686055|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KJ127304 (Enterococcus phage AUEF3, partial genome) position: , mismatch: 0, identity: 1.0

attctctgtcacattccattagttccatgt	CRISPR spacer
attctctgtcacattccattagttccatgt	Protospacer
******************************

13. spacer 2.3|1684999|30|LR134312|CRISPRCasFinder,CRT matches to GQ452243 (Enterococcus phage phiEf11, complete genome) position: , mismatch: 1, identity: 0.967

tttgataatccagaatcaacatcttcacca	CRISPR spacer
tttgataatccagaatcaacatcttcgcca	Protospacer
**************************.***

14. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to GQ478087 (Enterococcus phage phiFL3B, complete genome) position: , mismatch: 1, identity: 0.967

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
ttaggattgcatcacgctctacttcgacat	Protospacer
*************************.****

15. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to NC_013648 (Enterococcus phage phiFL3A, complete genome) position: , mismatch: 1, identity: 0.967

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
ttaggattgcatcacgctctacttcgacat	Protospacer
*************************.****

16. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to NC_028671 (Enterococcus phage vB_EfaS_IME197, complete genome) position: , mismatch: 1, identity: 0.967

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
ttaggattgcatcacgctctacttcgacat	Protospacer
*************************.****

17. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to LC547238 (Entercoccus phage phiM1EF2 DNA, nearly complete genome) position: , mismatch: 1, identity: 0.967

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tgcgagctcccaacatacgttgacggtgca	Protospacer
*.****************************

18. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KY303907 (Enterococcus phage EF-P29, complete genome) position: , mismatch: 1, identity: 0.967

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tacgagctcccaacatacgttgacggtgta	Protospacer
****************************.*

19. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_041960 (Enterococcus phage SAP6, complete genome) position: , mismatch: 1, identity: 0.967

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tacgagctcccaacatacgttgacggtgta	Protospacer
****************************.*

20. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KY472224 (Enterococcus phage EF-P10, complete genome) position: , mismatch: 1, identity: 0.967

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tacgagctcccaacatacgttgacggtgta	Protospacer
****************************.*

21. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KJ127303 (Enterococcus phage VD13, complete genome) position: , mismatch: 1, identity: 0.967

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tacgagctcccaacatacgttgacggtgta	Protospacer
****************************.*

22. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK721194 (Enterococcus phage vB_EfaS_Ef7.1, complete genome) position: , mismatch: 1, identity: 0.967

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tacgagctcccaacattcgttgacggtgca	Protospacer
**************** *************

23. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_029016 (Enterococcus phage vB_EfaS_IME198, complete genome) position: , mismatch: 1, identity: 0.967

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tacgagctcccaacatacgttgacggtgta	Protospacer
****************************.*

24. spacer 2.9|1685395|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to GQ452243 (Enterococcus phage phiEf11, complete genome) position: , mismatch: 1, identity: 0.967

ccttgataagatccacctcctgatccagaa	CRISPR spacer
ccttgataagatcctcctcctgatccagaa	Protospacer
************** ***************

25. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MH355583 (Enterococcus phage vB_EfaS_LM99, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

26. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK360024 (Enterococcus phage vB_EfaS_Max, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

27. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK721190 (Enterococcus phage vB_EfaS_Ef6.4, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

28. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_042101 (Enterococcus phage PMBT2, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

29. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MH203383 (Ecterococcus phage vB_EfaS_AL3, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

30. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_042022 (Enterococcus phage phiSHEF4, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaaatatgctttacctgattgttca	Protospacer
********.*********************

31. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MT520979 (Enterococcus phage vB_EfaS-271, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

32. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_042126 (Enterococcus phage vB_EfaS_AL3, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

33. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_042023 (Enterococcus phage phiSHEF5, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

34. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_042127 (Enterococcus phage vB_EfaS_AL2, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

35. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MH193369 (Enterococcus phage LY0322, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

36. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_031260 (Enterococcus phage Ec-ZZ2, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

37. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KF733017 (Enterococcus phage IME-EF4, complete genome) position: , mismatch: 1, identity: 0.967

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaagtatgctttacctgtttgttca	Protospacer
********************** *******

38. spacer 2.13|1685659|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to CAJDKF010000002 (Enterococcus phage vB_EfaS_159 genome assembly, contig: phage159-genome, whole genome shotgun sequence) position: , mismatch: 1, identity: 0.967

aaccctcttactatgagttccatttatttt	CRISPR spacer
aaccctcttgctatgagttccatttatttt	Protospacer
*********.********************

39. spacer 2.15|1685791|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK268686 (Enterococcus phage vB_EfaH_EF1TV, complete genome) position: , mismatch: 1, identity: 0.967

ccgtaaactctcggacgtgactcaatataa	CRISPR spacer
ccgtaaaatctcggacgtgactcaatataa	Protospacer
******* **********************

40. spacer 2.15|1685791|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to HE962497 (Streptococcus phage SP-QS1 complete genome) position: , mismatch: 1, identity: 0.967

ccgtaaactctcggacgtgactcaatataa	CRISPR spacer
ccgtagactctcggacgtgactcaatataa	Protospacer
*****.************************

41. spacer 2.15|1685791|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to AP018714 (Enterococcus phage phiEF17H DNA, complete sequence) position: , mismatch: 1, identity: 0.967

ccgtaaactctcggacgtgactcaatataa	CRISPR spacer
ccgtagactctcggacgtgactcaatataa	Protospacer
*****.************************

42. spacer 2.3|1684999|30|LR134312|CRISPRCasFinder,CRT matches to NC_028671 (Enterococcus phage vB_EfaS_IME197, complete genome) position: , mismatch: 2, identity: 0.933

tttgataatccagaatcaacatcttcacca	CRISPR spacer
tttgataacccagaatcaacatcttcgcca	Protospacer
********.*****************.***

43. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK570225 (Enterococcus phage vB_EfaS_PHB08, complete genome) position: , mismatch: 2, identity: 0.933

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tccgagctcccaacatacgttgacggtgta	Protospacer
* **************************.*

44. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to HE962497 (Streptococcus phage SP-QS1 complete genome) position: , mismatch: 2, identity: 0.933

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tacgagctcccaacattcgctgacggtgca	Protospacer
**************** **.**********

45. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK721199 (Enterococcus phage vB_EfaS_Ef5.1, complete genome) position: , mismatch: 2, identity: 0.933

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgacggaacagagttgaaacgcacc	Protospacer
********** ******************.

46. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK360024 (Enterococcus phage vB_EfaS_Max, complete genome) position: , mismatch: 2, identity: 0.933

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgacggaacagagttgaaacgcacc	Protospacer
********** ******************.

47. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK721190 (Enterococcus phage vB_EfaS_Ef6.4, complete genome) position: , mismatch: 2, identity: 0.933

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgacggaacagagttgaaacgcacc	Protospacer
********** ******************.

48. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_042101 (Enterococcus phage PMBT2, complete genome) position: , mismatch: 2, identity: 0.933

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgacggaacagagttgaaacgcacc	Protospacer
********** ******************.

49. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK721200 (Enterococcus phage vB_EfaS_Ef5.3, complete genome) position: , mismatch: 2, identity: 0.933

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgacggaacagagttgaaacgcacc	Protospacer
********** ******************.

50. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_042022 (Enterococcus phage phiSHEF4, complete genome) position: , mismatch: 2, identity: 0.933

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgacggaacagagttgaaacgcacc	Protospacer
********** ******************.

51. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to CAJDKF010000002 (Enterococcus phage vB_EfaS_159 genome assembly, contig: phage159-genome, whole genome shotgun sequence) position: , mismatch: 2, identity: 0.933

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgacggaacagagttgaaacgcacc	Protospacer
********** ******************.

52. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK721186 (Enterococcus phage vB_EfaS_Ef5.2, complete genome) position: , mismatch: 2, identity: 0.933

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgacggaacagagttgaaacgcacc	Protospacer
********** ******************.

53. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KF728385 (Enterococcus phage IME_EF3, complete genome) position: , mismatch: 2, identity: 0.933

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtgaagtatgctttacctgattgctca	Protospacer
*****.********************.***

54. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KX284704 (Enterococcus phage SANTOR1, complete genome) position: , mismatch: 2, identity: 0.933

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaaatatgctttacctgtttgttca	Protospacer
********.************* *******

55. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK721187 (Enterococcus phage vB_EfaS_Ef6.1, complete genome) position: , mismatch: 2, identity: 0.933

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaaatatgctttacctgtttgttca	Protospacer
********.************* *******

56. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MG264739 (UNVERIFIED: Enterococcus phage phiNASRA1, complete genome) position: , mismatch: 2, identity: 0.933

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
tctgtaaaatatgctttacctgtttgttca	Protospacer
********.************* *******

57. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MH618488 (Enterococcus phage vB_EfaS_HEf13, complete genome) position: , mismatch: 3, identity: 0.9

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tacgagctcctagcatacgttgacggtgta	Protospacer
**********.*.***************.*

58. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MH791415 (UNVERIFIED: Enterococcus phage EfsWh-1, complete genome) position: , mismatch: 3, identity: 0.9

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tacgagctcctagcatacgttgacggtgta	Protospacer
**********.*.***************.*

59. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_018086 (Enterococcus phage BC-611, complete genome) position: , mismatch: 3, identity: 0.9

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tgcgagctaccaacatacgttgacggtgta	Protospacer
*.****** *******************.*

60. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to AB712291 (Enterococcus phage BC-611 DNA, complete genome) position: , mismatch: 3, identity: 0.9

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tgcgagctaccaacatacgttgacggtgta	Protospacer
*.****** *******************.*

61. spacer 2.7|1685263|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MN871443 (UNVERIFIED: Enterococcus phage EfsWh_1, complete genome) position: , mismatch: 3, identity: 0.9

tacgagctcccaacatacgttgacggtgca	CRISPR spacer
tacgagctcctagcatacgttgacggtgta	Protospacer
**********.*.***************.*

62. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_042023 (Enterococcus phage phiSHEF5, complete genome) position: , mismatch: 3, identity: 0.9

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgatggaacagagttgaaacgcacc	Protospacer
********.* ******************.

63. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MH355583 (Enterococcus phage vB_EfaS_LM99, complete genome) position: , mismatch: 3, identity: 0.9

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgatggaacagagttgaaacgcacc	Protospacer
********.* ******************.

64. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MT119359 (Enterococcus phage heks, complete genome) position: , mismatch: 3, identity: 0.9

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgatggaacagagttgaaacgcacc	Protospacer
********.* ******************.

65. spacer 2.11|1685527|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MT520979 (Enterococcus phage vB_EfaS-271, complete genome) position: , mismatch: 3, identity: 0.9

ccacttgacgtaacagagttgaaacgcact	CRISPR spacer
ccacttgatggaacagagttgaaacgcacc	Protospacer
********.* ******************.

66. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MN694811 (Marine virus AFVG_250M587, complete genome) position: , mismatch: 4, identity: 0.867

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ggaacttttattttctttgcttcttttgca	Protospacer
* *******.******** **********

67. spacer 2.19|1686055|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MT119359 (Enterococcus phage heks, complete genome) position: , mismatch: 4, identity: 0.867

attctctgtcacattccattagttccatgt	CRISPR spacer
aatcttcttcacattccattagttccatgt	Protospacer
* ***.. **********************

68. spacer 2.19|1686055|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK125140 (Enterococcus phage Nonaheksakonda, complete genome) position: , mismatch: 4, identity: 0.867

attctctgtcacattccattagttccatgt	CRISPR spacer
aatcttcttcacattccattagttccatgt	Protospacer
* ***.. **********************

69. spacer 2.1|1684867|30|LR134312|CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 5, identity: 0.833

aaattttttgaacttaatgcaatttcttga	CRISPR spacer
aaattttttgctcttaatgcaattacatta	Protospacer
**********  ************ * * *

70. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MT254578 (Bacillus phage Izhevsk, complete genome) position: , mismatch: 5, identity: 0.833

gcaact--tttgttttcttttcttcttttgct	CRISPR spacer
--aaccaatttgctttcttttcttcttttggt	Protospacer
  ***.  ****.***************** *

71. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 5, identity: 0.833

gcaact--tttgttttcttttcttcttttgct	CRISPR spacer
--aaccagtttgctttcttttcttcttttggt	Protospacer
  ***.  ****.***************** *

72. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040855 (Lactobacillus johnsonii strain G2A plasmid unnamed1) position: , mismatch: 5, identity: 0.833

-gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ggtaaatttt-ttttcttttcttctttttca	Protospacer
 *.** **** ***************** *

73. spacer 2.19|1686055|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KF728385 (Enterococcus phage IME_EF3, complete genome) position: , mismatch: 5, identity: 0.833

attctctgtcacattccattagttccatgt	CRISPR spacer
aatcctcgtcacattccattaggtccatgt	Protospacer
* **...*************** *******

74. spacer 1.8|441022|30|LR134312|CRISPRCasFinder,CRT matches to MK867354 (Synechococcus phage S-SCSM1, complete genome) position: , mismatch: 6, identity: 0.8

caatgtaaatgctcattatgatttacatat	CRISPR spacer
gatggaaaatcctcattatgatttccatat	Protospacer
 *  * **** ************* *****

75. spacer 2.1|1684867|30|LR134312|CRISPRCasFinder,CRT matches to NC_019526 (Enterobacteria phage vB_KleM-RaK2, complete genome) position: , mismatch: 6, identity: 0.8

aaattttttgaacttaatgcaat--ttcttga	CRISPR spacer
aaattttttgaacgtaatgccataatcgtt--	Protospacer
************* ****** **  *. **

76. spacer 2.1|1684867|30|LR134312|CRISPRCasFinder,CRT matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 6, identity: 0.8

aaattttttgaacttaatgcaat--ttcttga	CRISPR spacer
aaattttttgaacgtaatgccataatcgtt--	Protospacer
************* ****** **  *. **

77. spacer 2.1|1684867|30|LR134312|CRISPRCasFinder,CRT matches to AB897757 (Klebsiella phage K64-1 DNA, complete genome) position: , mismatch: 6, identity: 0.8

aaattttttgaacttaatgcaat--ttcttga	CRISPR spacer
aaattttttgaacgtaatgccataatcgtt--	Protospacer
************* ****** **  *. **

78. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KT337346 (Streptococcus phage phiARI0285-2, partial genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

79. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KX550065 (Streptococcus phage SpGS-1, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

80. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KY065502 (Streptococcus phage IPP66, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

81. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KY065479 (Streptococcus phage IPP39, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

82. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KT337348 (Streptococcus phage phiARI0378, partial genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

83. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KY065455 (Streptococcus phage IPP14, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

84. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KT337364 (Streptococcus phage phiARI0639b, partial genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

85. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KY065487 (Streptococcus phage IPP48, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

86. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KT337358 (Streptococcus phage phiARI0468-4, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

87. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KY065501 (Streptococcus phage IPP65, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

88. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KY065493 (Streptococcus phage IPP55, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

89. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KY065491 (Streptococcus phage IPP53, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

90. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to DQ113772 (Streptococcus pneumoniae bacteriophage MM1 1998, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

91. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KY065490 (Streptococcus phage IPP52, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

92. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to KY065492 (Streptococcus phage IPP54, complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

93. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to AJ302074 (Streptococcus pneumoniae bacteriophage MM1 complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

94. spacer 2.4|1685065|30|LR134312|CRISPRCasFinder,CRT matches to NC_022791 (Streptococcus phage phiBHN167 complete genome) position: , mismatch: 6, identity: 0.8

gctaatcatcatatacgctaatttaaattg	CRISPR spacer
ccttatcatcatatacgctagtttaagtac	Protospacer
 ** ****************.*****.*

95. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR217721 (Candidatus Erwinia haradaeae strain ErCilaricifoliae isolate 3058 plasmid pBioThi) position: , mismatch: 6, identity: 0.8

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tcgacttttgttttcttttctttttcttat	Protospacer
 *.*******************.**.*  *

96. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 6, identity: 0.8

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ataatttctgttttcttttcttctttagtt	Protospacer
..**.**.****************** *.*

97. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 6, identity: 0.8

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
gcatcttttattttcttttcttcctctagt	Protospacer
*** *****.*************.*.*. *

98. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049194 (Enterobacter hormaechei strain Y2152 plasmid pDC2152-6, complete sequence) position: , mismatch: 6, identity: 0.8

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
gaagcttttgttttcttttctattttttat	Protospacer
* *.***************** .****  *

99. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049190 (Enterobacter hormaechei strain Y323 plasmid pY323-2, complete sequence) position: , mismatch: 6, identity: 0.8

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
gaagcttttgttttcttttctattttttat	Protospacer
* *.***************** .****  *

100. spacer 1.1|440560|30|LR134312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018682 (Vibrio casei strain DSM 22364 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

tgacaacattgtaattgagaa-----cgcacgtat	CRISPR spacer
tgacaacattgtacttgagaagattgagca-----	Protospacer
************* *******      ***

101. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MT446400 (UNVERIFIED: Escherichia virus TH26, complete genome) position: , mismatch: 7, identity: 0.767

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgctgcatcacgctctgcttcaacaa	Protospacer
. ** ..*************.********

102. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MT446399 (UNVERIFIED: Escherichia virus TH25, complete genome) position: , mismatch: 7, identity: 0.767

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgctgcatcacgctctgcttcaacaa	Protospacer
. ** ..*************.********

103. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to NC_048845 (Escherichia phage flopper, complete genome) position: , mismatch: 7, identity: 0.767

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgctgcatcacgctctgcttcaacaa	Protospacer
. ** ..*************.********

104. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MT446409 (UNVERIFIED: Escherichia virus TH37, complete genome) position: , mismatch: 7, identity: 0.767

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgctgcatcacgctctgcttcaacaa	Protospacer
. ** ..*************.********

105. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MT446419 (UNVERIFIED: Escherichia virus TH53, complete genome) position: , mismatch: 7, identity: 0.767

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgctgcatcacgctctgcttcaacaa	Protospacer
. ** ..*************.********

106. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MN117721 (Escherichia phage vB_EcoP_Bp7, complete genome) position: , mismatch: 7, identity: 0.767

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgctgcatcacgctctgcttcaacaa	Protospacer
. ** ..*************.********

107. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MN122072 (Escherichia phage vB_EcoM_Bp10, complete genome) position: , mismatch: 7, identity: 0.767

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgctgcatcacgctctgcttcaacaa	Protospacer
. ** ..*************.********

108. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to NC_010106 (Enterobacteria phage phiEcoM-GJ1, complete genome) position: , mismatch: 7, identity: 0.767

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgctgcatcacgctctgcttcaacaa	Protospacer
. ** ..*************.********

109. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MF044458 (Escherichia phage ST32, complete genome) position: , mismatch: 7, identity: 0.767

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgctgcatcacgctctgcttcaacaa	Protospacer
. ** ..*************.********

110. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MH221129 (Salmonella phage SPAsTU, complete genome) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tctttttttgttttcttttctttttttgtc	Protospacer
 *  .*****************.*****..

111. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MH221128 (Salmonella phage STsAS, complete genome) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tctttttttgttttcttttctttttttgtc	Protospacer
 *  .*****************.*****..

112. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

113. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

114. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024774 (Bacillus thuringiensis LM1212 plasmid pLM3, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

115. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

116. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

117. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021437 (Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

118. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021437 (Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

119. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021437 (Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

120. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021437 (Bacillus thuringiensis strain C15 plasmid pBMB240, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

121. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_017414 (Borreliella burgdorferi N40 plasmid N40_lp36, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
atagcttttcttttcttttcttctttaatt	Protospacer
..*.***** **************** ..*

122. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024772 (Bacillus thuringiensis LM1212 plasmid pLM1, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

123. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041074 (Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

124. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041074 (Bacillus tropicus strain LM1212-W3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
caggcgtttgttttcttttctttttttgtt	Protospacer
  ..* ****************.*****.*

125. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MN692994 (Marine virus AFVG_117M61, complete genome) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
atgaattttgttttctttttttcttttctt	Protospacer
...* **************.******* .*

126. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MN693508 (Marine virus AFVG_25M1, complete genome) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tctagttcttttttcttttcttcttttggc	Protospacer
 * * **.* ****************** .

127. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_027402 (Salmonella phage SPN3US, complete genome) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tctttttttgtttccttttctttttttgtt	Protospacer
 *  .********.********.*****.*

128. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_007823 (Coliphage NC28, complete genome) position: , mismatch: 7, identity: 0.767

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
gttggtgttgttttcttttctgcttctgct	Protospacer
*. . * ************** ***.****

129. spacer 2.10|1685461|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to AY954949 (Bacteriophage 66, complete genome) position: , mismatch: 7, identity: 0.767

gtggcaatgaacttgtctaaaaatgaggaa	CRISPR spacer
attaacatggacttatctaaaaatgaggaa	Protospacer
.* .  ***.****.***************

130. spacer 2.10|1685461|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_007046 (Staphylococcus phage 66, complete genome) position: , mismatch: 7, identity: 0.767

gtggcaatgaacttgtctaaaaatgaggaa	CRISPR spacer
attaacatggacttatctaaaaatgaggaa	Protospacer
.* .  ***.****.***************

131. spacer 2.10|1685461|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to AF513032 (Staphylococcus phage phi44AHJD, complete genome) position: , mismatch: 7, identity: 0.767

gtggcaatgaacttgtctaaaaatgaggaa	CRISPR spacer
attaacatggacttatctaaaaatgaggaa	Protospacer
.* .  ***.****.***************

132. spacer 2.10|1685461|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_004678 (Staphylococcus phage 44AHJD, complete genome) position: , mismatch: 7, identity: 0.767

gtggcaatgaacttgtctaaaaatgaggaa	CRISPR spacer
attaacatggacttatctaaaaatgaggaa	Protospacer
.* .  ***.****.***************

133. spacer 2.10|1685461|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_004679 (Staphylococcus phage phiP68, complete genome) position: , mismatch: 7, identity: 0.767

gtggcaatgaacttgtctaaaaatgaggaa	CRISPR spacer
attaacatggacttatctaaaaatgaggaa	Protospacer
.* .  ***.****.***************

134. spacer 2.10|1685461|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_031008 (Staphylococcus phage SLPW, complete genome) position: , mismatch: 7, identity: 0.767

gtggcaatgaacttgtctaaaaatgaggaa	CRISPR spacer
attaatatggacttatctaaaaatgaggaa	Protospacer
.* .  ***.****.***************

135. spacer 2.10|1685461|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to AF513033 (Staphylococcus aureus phage phiP68, complete genome) position: , mismatch: 7, identity: 0.767

gtggcaatgaacttgtctaaaaatgaggaa	CRISPR spacer
attaacatggacttatctaaaaatgaggaa	Protospacer
.* .  ***.****.***************

136. spacer 2.10|1685461|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_048107 (Staphylococcus phage Pabna, complete genome) position: , mismatch: 7, identity: 0.767

gtggcaatgaacttgtctaaaaatgaggaa	CRISPR spacer
attaacatggacttatctaaaaatgaggaa	Protospacer
.* .  ***.****.***************

137. spacer 2.13|1685659|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046008 (Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence) position: , mismatch: 7, identity: 0.767

aaccctcttactatgagttccatttatttt	CRISPR spacer
agtcatcttgctattagttccatttattac	Protospacer
*..* ****.**** ************* .

138. spacer 2.13|1685659|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046005 (Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence) position: , mismatch: 7, identity: 0.767

aaccctcttactatgagttccatttatttt	CRISPR spacer
agtcatcttgctattagttccatttattac	Protospacer
*..* ****.**** ************* .

139. spacer 2.16|1685857|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to AJ629110 (Oenococcus oeni bacteriophage fOg30 ORF167, ORF432, ORF163, ORF380, ORF424, ORF217, ORF252, ORF80, ORF161, ORF364 and ORF58) position: , mismatch: 7, identity: 0.767

atttattagtttcgttaatcttaatattga	CRISPR spacer
ggttattactttcgataatcttaatagttt	Protospacer
. ****** ***** *********** *

140. spacer 1.3|440692|30|LR134312|PILER-CR,CRISPRCasFinder,CRT matches to MH617137 (Microviridae sp. isolate ctbe610, complete genome) position: , mismatch: 8, identity: 0.733

tgatgatgcacagcaaaacacatttaagat	CRISPR spacer
atttgatgcacagcaaaacagattcaaagg	Protospacer
   ***************** ***.**..

141. spacer 1.7|440956|30|LR134312|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 8, identity: 0.733

tcatagcagaccaacctgctccatcgcttg	CRISPR spacer
gcggtgcagaccatcgtgctccatcgctcc	Protospacer
 *.  ******** * ************.

142. spacer 1.7|440956|30|LR134312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045361 (Roseivivax sp. THAF40 plasmid pTHAF40_a, complete sequence) position: , mismatch: 8, identity: 0.733

tcatagcagaccaacctgctccatcgcttg	CRISPR spacer
tgcggcctgaccaacctgcgccatcgctta	Protospacer
*   . * *********** *********.

143. spacer 1.7|440956|30|LR134312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045319 (Roseivivax sp. THAF197b plasmid pTHAF197b_a, complete sequence) position: , mismatch: 8, identity: 0.733

tcatagcagaccaacctgctccatcgcttg	CRISPR spacer
tgcggcctgaccaacctgcgccatcgctta	Protospacer
*   . * *********** *********.

144. spacer 2.2|1684933|30|LR134312|CRISPRCasFinder,CRT matches to NC_009453 (Arthrobacter sp. Rue61a plasmid pAL1, complete sequence) position: , mismatch: 8, identity: 0.733

aaaacttttgacggctctttagtcaaccca	CRISPR spacer
gcattttttgacggctctgaagtcaaccgt	Protospacer
. * .*************  ********

145. spacer 2.3|1684999|30|LR134312|CRISPRCasFinder,CRT matches to NC_019909 (Yersinia phage phiR1-RT complete genome) position: , mismatch: 8, identity: 0.733

tttgataat----ccagaatcaacatcttcacca	CRISPR spacer
----gtaccactaccagaatcaaaatcttcacca	Protospacer
    .** .    ********** **********

146. spacer 2.3|1684999|30|LR134312|CRISPRCasFinder,CRT matches to NC_028820 (Yersinia phage vB_YenM_TG1, complete genome) position: , mismatch: 8, identity: 0.733

tttgataat----ccagaatcaacatcttcacca	CRISPR spacer
----gtaccactaccagaatcaaaatcttcacca	Protospacer
    .** .    ********** **********

147. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MT446403 (UNVERIFIED: Escherichia virus TH29, complete genome) position: , mismatch: 8, identity: 0.733

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgccgcatcacgctctgcttcaacaa	Protospacer
. ** ...************.********

148. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MT446406 (UNVERIFIED: Escherichia virus TH33, complete genome) position: , mismatch: 8, identity: 0.733

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgccgcatcacgctctgcttcaacaa	Protospacer
. ** ...************.********

149. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MT446402 (UNVERIFIED: Escherichia virus TH28, complete genome) position: , mismatch: 8, identity: 0.733

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgccgcatcacgctctgcttcaacaa	Protospacer
. ** ...************.********

150. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MT446397 (UNVERIFIED: Escherichia virus TH23, complete genome) position: , mismatch: 8, identity: 0.733

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgccgcatcacgctctgcttcaacaa	Protospacer
. ** ...************.********

151. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 8, identity: 0.733

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
gaacttctgcaccacgctctacttcaagat	Protospacer
  *   .****.*************** **

152. spacer 2.5|1685131|30|LR134312|CRISPRCasFinder,CRT matches to MT446398 (UNVERIFIED: Escherichia virus TH24, complete genome) position: , mismatch: 8, identity: 0.733

ttaggattgcatcacgctctacttcaacat	CRISPR spacer
caagcgccgcatcacgctctgcttcaacaa	Protospacer
. ** ...************.********

153. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
aaacgttttgttttcttttcgtctttcttt	Protospacer
. *  *************** *****. .*

154. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014118 (Staphylococcus epidermidis strain FDAARGOS_153 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tgaacttctggtttcttttcttctttctga	Protospacer
  *****.** ***************.

155. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MN940411 (Staphylococcus phage f2b1, partial genome) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ttagtaggtgctttcttttcttcttttgct	Protospacer
 .*..   **.*******************

156. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MN693728 (Marine virus AFVG_250M561, complete genome) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tttttctttgttttagtttcttcttttgct	Protospacer
 .  ..********  **************

157. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to HG796790 (Uncultured bacterium plasmid pRGF00033) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ttttctttttttttctttttttcttttttt	Protospacer
 .  ***** *********.******* .*

158. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MN693898 (Marine virus AFVG_250M937, complete genome) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
gatgcttttgttttctttgcttcatttata	Protospacer
*  .************** **** ***..

159. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_041918 (Geobacillus phage TP-84, complete genome) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ttgcttgttgttttcttttcttcttccgct	Protospacer
 .. .* ******************..***

160. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MT408532 (Synechococcus phage SynMITS9220M01, complete genome) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tcgtctttcattttcttttcttcttttctg	Protospacer
 *. ****..***************** .

161. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028726 (Enterococcus faecalis strain CVM N60443F plasmid pN60443F-1, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tctttctttgttttcttctcttcttttttt	Protospacer
 *  ..***********.********* .*

162. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045289 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tttccttttcttttcttttctccttttctt	Protospacer
 .  ***** ***********.***** .*

163. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045289 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ccttcttttcctttcttttcttcttttcag	Protospacer
 *  ***** .****************

164. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045289 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tttcctttccttttcttttcttcttttctt	Protospacer
 .  ****. ***************** .*

165. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to JQ680350 (Unidentified phage clone 1013_scaffold47 genomic sequence) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
gcaagttctgttttcttttcttcaaaccat	Protospacer
**** **.***************   .  *

166. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_019485 (Enterobacter phage EcP1, complete genome) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
atatcaaaagttttcttttcttcttttact	Protospacer
..* *    ******************.**

167. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MT679221 (Proteus phage 7, complete genome) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ttcttttttgtttccttttctttttttgtt	Protospacer
 .  .********.********.*****.*

168. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MT799840 (Salmonella phage JN03, complete genome) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
cttttttttgtttccttttctttttttgtt	Protospacer
 .  .********.********.*****.*

169. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to LR535912 (XXX) position: , mismatch: 8, identity: 0.733

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
atcttttttgtttccttttctttttttgtt	Protospacer
..  .********.********.*****.*

170. spacer 2.8|1685329|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MT446422 (UNVERIFIED: Escherichia virus TH57, complete genome) position: , mismatch: 8, identity: 0.733

agcttcagtaaattggttacacaaacctca	CRISPR spacer
tacttcagtaaattggttaccgaaacggac	Protospacer
 .******************  ****

171. spacer 2.8|1685329|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MT446420 (UNVERIFIED: Escherichia virus TH54, complete genome) position: , mismatch: 8, identity: 0.733

agcttcagtaaattggttacacaaacctca	CRISPR spacer
tacttcagtaaattggttaccgaaacggac	Protospacer
 .******************  ****

172. spacer 2.8|1685329|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to GQ981382 (Shigella phage SP18, complete genome) position: , mismatch: 8, identity: 0.733

agcttcagtaaattggttac----acaaacctca	CRISPR spacer
tatttcagtaaattggttaccgaaacgaac----	Protospacer
 ..*****************    **.***

173. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MN856015 (Myoviridae sp. isolate 136, complete genome) position: , mismatch: 8, identity: 0.733

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
aatgagaagtatgctttagctgattgtaac	Protospacer
  ** .************ ********

174. spacer 1.7|440956|30|LR134312|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042333 (Bosea sp. F3-2 plasmid pB32-2, complete sequence) position: , mismatch: 9, identity: 0.7

tcatagcagaccaacctgctccatcgcttg	CRISPR spacer
ggccagcagcccaacctgctccaacgcccc	Protospacer
   .***** ************* ***..

175. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK415405 (Phage FAKO05_000032F, complete genome) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ttctcttatgttttcttttcttctttctag	Protospacer
 .  *** ******************.

176. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to LC499744 (Enterococcus faecalis S7316 plasmid pS7316optrA DNA, complete sequence) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tctttctttgttttcttctcttcttttttc	Protospacer
 *  ..***********.********* ..

177. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK439959 (Escherichia coli strain Ec-2Lar plasmid pC-Ec2-KPC, complete sequence) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tacctttttgttttcttctcttgttttgta	Protospacer
    .************.**** *****.

178. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035095 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ttcacttttgttttcttatcatctttcatc	Protospacer
 . ************** ** *****....

179. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX579977 (Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tctttctttgttttcttctcttcttttttc	Protospacer
 *  ..***********.********* ..

180. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tgattcattcttttcttttcttcttttgag	Protospacer
  * .. ** ******************

181. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045289 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tttccttttcttttcttttctttttttttc	Protospacer
 .  ***** ************.**** ..

182. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009921 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_2, complete sequence) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ttcacttttgttttcttatcatctttcatc	Protospacer
 . ************** ** *****....

183. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MK784778 (Enterococcus faecalis strain E508 plasmid pE508-2, complete sequence) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
tctttctttgttttcttctcttcttttttc	Protospacer
 *  ..***********.********* ..

184. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MN693573 (Marine virus AFVG_25M441, complete genome) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ctttctttggctttcttttcttcttttaaa	Protospacer
 .  **** *.****************.

185. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KU686209 (Synechococcus phage S-CAM22 isolate 1209TA19, complete genome) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ctcgtctttgtttacttttcttgttttgca	Protospacer
 . ...******* ******** ******

186. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KU686208 (Synechococcus phage S-CAM22 isolate 0310NB44, complete genome) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ctcgtctttgtttacttttcttgttttgca	Protospacer
 . ...******* ******** ******

187. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KU686207 (Synechococcus phage S-CAM22 isolate 0210CC35, complete genome) position: , mismatch: 9, identity: 0.7

gcaacttttgttttcttttcttcttttgct	CRISPR spacer
ctcgtctttgtttacttttcttgttttgca	Protospacer
 . ...******* ******** ******

188. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 9, identity: 0.7

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
attgtaaaatatgctttacctgaagcattt	Protospacer
 .******.**************    *.

189. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_042112 (Campylobacter phage CP81, complete genome) position: , mismatch: 9, identity: 0.7

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
attgtaaaatatgctttacctgaagcattt	Protospacer
 .******.**************    *.

190. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KX879627 (Campylobacter phage vB_CjeM_Los1, complete genome) position: , mismatch: 9, identity: 0.7

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
attgtaaaatatgctttacctgaagcattt	Protospacer
 .******.**************    *.

191. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to KF148616 (Campylobacter phage CP8, complete genome) position: , mismatch: 9, identity: 0.7

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
attgtaaaatatgctttacctgaagcattt	Protospacer
 .******.**************    *.

192. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to NC_016562 (Campylobacter phage CPX, complete genome) position: , mismatch: 9, identity: 0.7

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
attgtaaaatatgctttacctgaagcattt	Protospacer
 .******.**************    *.

193. spacer 2.12|1685593|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to JX569801 (Campylobacter phage CP30A, complete genome) position: , mismatch: 9, identity: 0.7

tctgtaaagtatgctttacctgattgttca	CRISPR spacer
attgtaaaatatgctttacctgaagcattt	Protospacer
 .******.**************    *.

194. spacer 2.16|1685857|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MF351863 (Synechococcus phage Bellamy, complete genome) position: , mismatch: 9, identity: 0.7

atttattagtttcgttaatcttaatattga	CRISPR spacer
cactatgagtttcgttaatcttgataagtt	Protospacer
  .*** ***************.***

195. spacer 1.2|440626|30|LR134312|PILER-CR,CRISPRCasFinder,CRT matches to KJ018210 (Flavobacterium sp. phage 1/32, complete genome) position: , mismatch: 10, identity: 0.667

aactattgtccgttttgcgggaaagaagtt	CRISPR spacer
tactattgtcccttttgcgggagttcgaca	Protospacer
 ********** **********.   ...

196. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to MH598800 (Pelagibacter phage HTVC031P, complete genome) position: , mismatch: 10, identity: 0.667

gcaacttttgttttcttttcttcttttgct-----	CRISPR spacer
-----tcttgttttgttttctttttttctttttga	Protospacer
     *.******* *******.**** .*

197. spacer 2.6|1685197|30|LR134312|CRISPRCasFinder,CRT,PILER-CR matches to HG796278 (Uncultured bacterium plasmid pRGI00192) position: , mismatch: 10, identity: 0.667

gcaacttttgttttcttttcttcttttgct-----	CRISPR spacer
-----ttttggtttgttttctttttttcttttttt	Protospacer
     ***** *** *******.**** .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1072470 : 1090243

Enterococcus_phage(42.86%)

tail,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE95568.1\|1072470_1074867_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.3e-19	24.1
VEE95571.1\|1074891_1075242_+	ribosome-binding factor A	NA	NA	NA	NA
VEE95573.1\|1075324_1075555_+	Uncharacterised protein	NA	NA	NA	NA
VEE95575.1\|1075614_1076088_-	Uncharacterised protein	A0A097BY56	Enterococcus_phage	1.1e-60	71.2
VEE95577.1\|1076134_1076617_-	cI-like repressor, S. pneumoniae bacteriophage EJ-1	R9QTP6	Staphylococcus_phage	1.2e-20	48.6
VEE95579.1\|1076833_1076968_+	Uncharacterised protein	NA	NA	NA	NA
VEE95581.1\|1076998_1077769_+	putative DNA replication protein	A0A0K0MX39	Streptococcus_phage	2.5e-33	57.0
VEE95583.1\|1077950_1078631_+	putative phage replication protein	A0A0P0I3L9	Lactobacillus_phage	1.1e-24	31.7
VEE95585.1\|1078633_1078726_+	Uncharacterised protein	NA	NA	NA	NA
VEE95587.1\|1078718_1079090_+	Uncharacterised protein	NA	NA	NA	NA
VEE95589.1\|1079109_1079517_+	phage transcriptional regulator, RinA family	NA	NA	NA	NA
VEE95591.1\|1079762_1080155_+	phage protein	NA	NA	NA	NA
VEE95593.1\|1080167_1080680_+\|tail	Phage tail protein	W6LP72	Streptococcus_phage	8.8e-35	49.4
VEE95595.1\|1080712_1081072_+	phage protein	A0A0F6N4J9	Staphylococcus_phage	7.6e-09	32.2
VEE95597.1\|1081089_1081458_+	phage protein	A0A1P8BLR3	Lactococcus_phage	4.6e-09	39.7
VEE95599.1\|1081447_1084381_+	phage protein	W8EBC4	Geobacillus_phage	6.9e-15	41.2
VEE95601.1\|1084382_1085309_+\|tail	phage tail protein	C9E2K5	Enterococcus_phage	9.0e-147	78.6
VEE95603.1\|1085321_1086779_+	phage minor structural protein, N-terminal region	C9E2K6	Enterococcus_phage	9.5e-175	47.7
VEE95605.1\|1086811_1088581_+	Uncharacterised protein	A0A097BYA8	Enterococcus_phage	1.8e-143	72.3
VEE95607.1\|1088604_1089000_+\|holin	holin	F0PIJ6	Enterococcus_phage	2.8e-33	48.9
VEE95609.1\|1089145_1090243_+	autolysin	A0A139ZVY1	Enterococcus_phage	2.6e-76	44.3

DBSCAN-SWA_2

1341202 : 1397356

Bacillus_virus(33.33%)

integrase,protease,transposase

attL 1380399:1380414|attR 1404963:1404978

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE96048.1\|1341202_1341325_+\|transposase	transposase	NA	NA	NA	NA
VEE96049.1\|1341374_1342199_+\|integrase	putative integrase protein	Q9MBM9	Staphylococcus_prophage	2.0e-49	41.8
VEE96051.1\|1342493_1343927_-	deoxyribodipyrimidine photolyase	A0A1V0SGL1	Hokovirus	4.2e-66	34.3
VEE96053.1\|1344060_1344906_-	transcriptional regulator	NA	NA	NA	NA
VEE96055.1\|1345214_1347143_-	PTS system sucrose-specific IIBC component	NA	NA	NA	NA
VEE96057.1\|1347159_1348833_-	oligo-1,6-glucosidase	NA	NA	NA	NA
VEE96059.1\|1349063_1350536_+	glycosyl hydrolases family 32	NA	NA	NA	NA
VEE96061.1\|1350551_1351535_+	sucrose operon repressor	NA	NA	NA	NA
VEE96063.1\|1351594_1351756_-	Uncharacterised protein	NA	NA	NA	NA
VEE96065.1\|1351865_1353275_-	glycosyl transferase family protein	NA	NA	NA	NA
VEE96067.1\|1353274_1355155_-	PTS system beta-glucoside-specific transporter subunit IIABC	NA	NA	NA	NA
VEE96069.1\|1355436_1356897_-	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein	NA	NA	NA	NA
VEE96071.1\|1357077_1357629_+	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA
VEE96073.1\|1357687_1358572_-	Domain of uncharacterised function (DUF1803)	NA	NA	NA	NA
VEE96075.1\|1358643_1359570_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
VEE96077.1\|1359665_1360430_-	pyruvate formate-lyase activating enzyme	NA	NA	NA	NA
VEE96079.1\|1360506_1362753_-	pyruvate formate-lyase	A0A2P0VNR5	Tetraselmis_virus	2.1e-165	41.3
VEE96081.1\|1363042_1365505_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	2.9e-99	30.7
VEE96083.1\|1365517_1367575_-	topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	4.5e-114	41.3
VEE96085.1\|1367779_1368208_-	CoA-binding protein	NA	NA	NA	NA
VEE96087.1\|1368295_1368739_-	ethanolamine utilization protein EutQ	NA	NA	NA	NA
VEE96089.1\|1368751_1369852_-	ethanolamine transporter	NA	NA	NA	NA
VEE96091.1\|1369864_1370128_-	ethanolamine utilization protein	NA	NA	NA	NA
VEE96093.1\|1370140_1370740_-	ethanolamine utilization protein	NA	NA	NA	NA
VEE96095.1\|1370754_1371381_-	propanediol utilization protein PduL	NA	NA	NA	NA
VEE96097.1\|1371393_1371963_-	Ethanolamine utilization cobalamin adenosyltransferase	NA	NA	NA	NA
VEE96099.1\|1372030_1372321_-	microcompartment protein	NA	NA	NA	NA
VEE96101.1\|1372444_1373923_-	aldehyde dehydrogenase	NA	NA	NA	NA
VEE96103.1\|1373913_1374432_-	ethanolamine utilization protein	NA	NA	NA	NA
VEE96105.1\|1374445_1375099_-	ethanolamine utilization protein EutL	NA	NA	NA	NA
VEE96107.1\|1375112_1376024_-	ethanolamine ammonia-lyase small subunit	NA	NA	NA	NA
VEE96109.1\|1376041_1377406_-	ethanolamine ammonia-lyase large subunit	NA	NA	NA	NA
VEE96111.1\|1377423_1378848_-	reactivating factor for ethanolamine ammonia lyase	NA	NA	NA	NA
VEE96113.1\|1378938_1380372_-	sensor histidine kinase	NA	NA	NA	NA
VEE96115.1\|1380372_1380954_-	two-component response regulator	NA	NA	NA	NA
1380399:1380414	attL	NA	NA	NA	NA
VEE96117.1\|1380972_1381320_-	propanediol utilization protein PduU	NA	NA	NA	NA
VEE96119.1\|1381479_1382610_-	PduQ protein	NA	NA	NA	NA
VEE96121.1\|1383096_1383678_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA
VEE96123.1\|1383674_1384118_-	propanediol utilization protein	NA	NA	NA	NA
VEE96125.1\|1384259_1385027_-	ferrichrome ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-13	27.6
VEE96127.1\|1385023_1386031_-	Fe3+-siderophore ABC transporter permease	NA	NA	NA	NA
VEE96129.1\|1386023_1386983_-	Hemin-binding periplasmic protein hmuT precursor	NA	NA	NA	NA
VEE96131.1\|1387535_1388165_+	putative glycerol-3-phosphate aceyltransferase	NA	NA	NA	NA
VEE96133.1\|1388206_1389082_-	aldose 1-epimerase	NA	NA	NA	NA
VEE96135.1\|1389115_1389898_-	transcriptional repressor CodY	NA	NA	NA	NA
VEE96137.1\|1389918_1391322_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	A0A191ZC11	Erwinia_phage	7.5e-44	29.7
VEE96139.1\|1391336_1391885_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
VEE96141.1\|1391913_1392813_-\|integrase	integrase family protein	A0A0K2CP59	Brevibacillus_phage	6.3e-36	31.2
VEE96143.1\|1393024_1394332_-	glucose inhibited division protein	NA	NA	NA	NA
VEE96145.1\|1394439_1396518_-	DNA topoisomerase I	A0A1V0SCS0	Indivirus	3.8e-100	35.8
VEE96147.1\|1396702_1397356_-\|protease	Membrane-bound protease, CAAX family	NA	NA	NA	NA
1404963:1404978	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1517126 : 1525770

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE96389.1\|1517126_1517699_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.1e-25	35.1
VEE96391.1\|1517695_1518727_-	phosphoribosylaminoimidazole synthetase	A0A1D8KMR0	Synechococcus_phage	2.2e-56	45.2
VEE96393.1\|1518728_1520168_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.1e-49	32.1
VEE96395.1\|1520143_1522363_-	phosphoribosylformylglycinamidine synthase protein	A6N228	Microbacterium_phage	1.3e-146	39.9
VEE96397.1\|1522359_1523034_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
VEE96399.1\|1523034_1523286_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
VEE96401.1\|1523299_1524013_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3ELR0	Synechococcus_phage	4.3e-48	43.0
VEE96403.1\|1524164_1525289_-	phosphoribosylaminoimidazole carboxylase II	NA	NA	NA	NA
VEE96405.1\|1525281_1525770_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	1.3e-19	42.7

DBSCAN-SWA_4

2225162 : 2234902

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEE97600.1\|2225162_2227346_+	anaerobic ribonucleoside triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	3.1e-286	66.8
VEE97602.1\|2227378_2227975_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A0C5K925	Enterococcus_phage	6.0e-51	56.4
VEE97604.1\|2228019_2229138_-	DNA polymerase IV	NA	NA	NA	NA
VEE97606.1\|2229263_2230022_-	YbbM seven transmembrane helix protein	NA	NA	NA	NA
VEE97608.1\|2230005_2230668_-	YbbL ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.7e-19	31.1
VEE97610.1\|2230682_2231555_-	putative S-adenosyl-methionine-dependent methyl transferase, YraL family	M1PLC5	Streptococcus_phage	6.2e-81	57.6
VEE97612.1\|2231666_2232014_-	regulator of replication initiation timing	M1PFV3	Streptococcus_phage	8.1e-16	36.7
VEE97614.1\|2232006_2232846_-	signal peptidase II	NA	NA	NA	NA
VEE97616.1\|2232962_2233913_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	6.2e-34	33.0
VEE97618.1\|2233914_2234244_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEE97620.1\|2234263_2234902_-	thymidylate kinase	M1PSC7	Streptococcus_phage	2.1e-54	53.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134312

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection