CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134318	Pseudomonas fluorescens strain NCTC9428 genome assembly, chromosome: 1	6 crisprs	DEDDh,csa3,DinG,cas3,RT,PD-DExK	0	0	5	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LR134318_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134318_1

193872-193994

Orphan

Consensus_repeat	Method
AGCTGCCGAAGGCTGCGATCTTTTGATCTTGTTTTTCAAGAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134318_1

>merge|LR134318|1|193872-193994|CRISPRCasFinder
AGCTGCCGAAGGCTGCGATCTTTTGATCTTGTTTTTCAAGAATCACAGATCGCAGCTAAAGGCATGCCTCCCTGTAGGAGCTGCCGAAGGCTGCGATCTTTTGATCTTGTCTTTCAAGAATCA

>LR134318|1|1|193872-193994|CRISPRCasFinder
AGCTGCCGAAGGCTGCGATCTTTTGATCTTGTTTTTCAAGAATCA	CAGATCGCAGCTAAAGGCATGCCTCCCTGTAGG
AGCTGCCGAAGGCTGCGATCTTTTGATCTTGTCTTTCAAGAATCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134318.1\|VEF06679.1\|201556_202546_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
LR134318.1\|VEF06682.1\|202774_203956_-\|stearoyl-CoA-9-desaturase	unknown	unknown	gnl\|CDD\|224316
LR134318.1\|VEF06658.1\|193323_193851_+\|hemin-storage-system,-HmsS-protein	unknown	unknown	gnl\|CDD\|372868
LR134318.1\|VEF06639.1\|182434_183322_+\|secretion-protein-HlyD	unknown	unknown	gnl\|CDD\|224482
LR134318.1\|VEF06670.1\|197166_198609_+\|succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183050
LR134318.1\|VEF06633.1\|180240_182232_+\|fusaric-acid-resistance-protein	unknown	unknown	gnl\|CDD\|377393
LR134318.1\|VEF06636.1\|182228_182438_+\|membrane-protein	unknown	unknown	gnl\|CDD\|377931
LR134318.1\|VEF06661.1\|194042_195566_-\|FAD-dependent-pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|369639
LR134318.1\|VEF06642.1\|183318_184761_+\|multidrug-efflux-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273830
LR134318.1\|VEF06667.1\|196373_196580_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF06656.1\|191971_193327_+\|biofilm-PNAG-synthesis-protein	unknown	unknown	gnl\|CDD\|236882
LR134318.1\|VEF06688.1\|206260_206443_+\|organosulfur-compounds-A	unknown	unknown	gnl\|CDD\|227870
LR134318.1\|VEF06648.1\|185737_187243_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|377603
LR134318.1\|VEF06673.1\|198795_200073_+\|4-aminobutyrate-aminotransferase	unknown	unknown	gnl\|CDD\|236149
LR134318.1\|VEF06651.1\|187479_189960_+\|outer-membrane-protein-PgaA	unknown	unknown	gnl\|CDD\|236644
LR134318.1\|VEF06653.1\|189972_191970_+\|outer-membrane-N-deacetylase	unknown	unknown	gnl\|CDD\|184754
LR134318.1\|VEF06676.1\|200210_201422_+\|response-regulator	unknown	unknown	gnl\|CDD\|370050
LR134318.1\|VEF06685.1\|204102_206022_+\|PAS/PAC-sensor-containing-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|236645
LR134318.1\|VEF06645.1\|184853_185489_+\|NADH:ubiquinone-oxidoreductase-subunit-2	unknown	unknown	unknown
LR134318.1\|VEF06664.1\|195627_196266_+\|PBP-family-phospholipid-binding-protein	unknown	unknown	gnl\|CDD\|176643

Protein	Function_ID	Function_description	E-value
LR134318.1\|VEF06682.1\|202774_203956_-\|stearoyl-CoA-9-desaturase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	4.34095e-100
LR134318.1\|VEF06658.1\|193323_193851_+\|hemin-storage-system,-HmsS-protein	gnl\|CDD\|372868	pfam13994, PgaD, PgaD-like protein. This family includes the PgaD protein from E. coli. The homopolymer poly-beta-1,6-N-acetyl-D-glucosamine (beta-1,6-GlcNAc; PGA) serves as an adhesin for the maintenance of biofilm structural stability in eubacteria. The pgaABCD operon is required for its synthesis and export. It has been shown that PgaD is essential for this process.	3.66874e-24
LR134318.1\|VEF06639.1\|182434_183322_+\|secretion-protein-HlyD	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	9.231e-81
LR134318.1\|VEF06670.1\|197166_198609_+\|succinate-semialdehyde-dehydrogenase	gnl\|CDD\|183050	PRK11241, gabD, NADP-dependent succinate-semialdehyde dehydrogenase I.	0
LR134318.1\|VEF06633.1\|180240_182232_+\|fusaric-acid-resistance-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	2.97536e-167
LR134318.1\|VEF06636.1\|182228_182438_+\|membrane-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	2.59448e-11
LR134318.1\|VEF06661.1\|194042_195566_-\|FAD-dependent-pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|369639	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	2.32319e-50
LR134318.1\|VEF06642.1\|183318_184761_+\|multidrug-efflux-outer-membrane-protein	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.34088e-65
LR134318.1\|VEF06656.1\|191971_193327_+\|biofilm-PNAG-synthesis-protein	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	0
LR134318.1\|VEF06688.1\|206260_206443_+\|organosulfur-compounds-A	gnl\|CDD\|227870	COG5583, COG5583, Uncharacterized small protein [Function unknown].	4.08295e-14
LR134318.1\|VEF06648.1\|185737_187243_+\|GTP-binding-protein	gnl\|CDD\|377603	pfam06097, DUF945, Bacterial protein of unknown function (DUF945). This family consists of several hypothetical bacterial proteins of unknown function.	5.05232e-110
LR134318.1\|VEF06673.1\|198795_200073_+\|4-aminobutyrate-aminotransferase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
LR134318.1\|VEF06651.1\|187479_189960_+\|outer-membrane-protein-PgaA	gnl\|CDD\|236644	PRK10049, pgaA, outer membrane protein PgaA; Provisional.	0
LR134318.1\|VEF06653.1\|189972_191970_+\|outer-membrane-N-deacetylase	gnl\|CDD\|184754	PRK14582, pgaB, poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB.	0
LR134318.1\|VEF06676.1\|200210_201422_+\|response-regulator	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	1.22907e-44
LR134318.1\|VEF06685.1\|204102_206022_+\|PAS/PAC-sensor-containing-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	5.03127e-125
LR134318.1\|VEF06679.1\|201556_202546_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.94227e-64
LR134318.1\|VEF06664.1\|195627_196266_+\|PBP-family-phospholipid-binding-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	3.35797e-49

>LR134318.1|VEF06658.1|193323_193851_+|hemin-storage-system,-HmsS-protein
MKIIRTRQRPFLVVVDVILTVVAWVGLLYLLFRGLWPLFASQVSESAIDNSAFDALGTLEIYLWVALVNALILIGWARYQQRKSRSFAQRRLPSPVIDDAGLSKSFKLSDDRFQKLRTPGVMTIHNDQEGDISNVVTHFWPLQLESLPPPLAPLEHPRVIFLHADEGDNREPLPR
>LR134318.1|VEF06656.1|191971_193327_+|biofilm-PNAG-synthesis-protein
MLDRLFALLVLALVLGVPLGLIFLVTGQFLMDFVFFYPLFMSGLWIAGGLYFWLHWERHWPWQDDTLPPPLEGEPLISILIPCYNEGDNAADTIHAALAQHYPNIEVIAINDGSKDNTAAVLDALAKEDPRLRVLHLAENQGKAVALRMGAIAARSEYLVCIDGDALLAPNTAAYLVAPMLDNARLGAVTGNPRIRTRSTLVGRVQVGEFSSIIGLIKRTQRVFGRIFTVSGVIVAFRRTALNRVGYWSPDMITEDIDISWKLQLDHWSIFYEPRALCWILMPETLGGLWKQRLRWAQGGAEVLFKNIRGIWQYRHRYLWPLLFEYCLSTGWAFTFLLSVIFWAVGKFVVMPEAIAVDHLMPPAFTGLLLAFVCLVQFAVSIIIDRRYEPGLGKTMFWVVWYPIAFWLVSLLTTLVSFPKVLFGQHQKRARWVSPDRGIKPIGDDTEEVIK
>LR134318.1|VEF06653.1|189972_191970_+|outer-membrane-N-deacetylase
MPFISRFILLLGALLISACAQQAPAFAPPSERPVADSEQAWPKNQVLGIAYHDVEDRDPDQAVVAVRTERMIEQLAWLRENGYKPVTVDQIMAARKGGPELPAKAVLLSFDDGYASFYTRVLPVLRAYNWHALLAPVGTWIDTPLNQPVDFAGTPRKRSDFLTWDQVREISRSGLVEIAAHTDANHKGILANPQGNLQPAAATRRYDPVTKSYESEADFQARIRSDVKNISEKIRKVTGYKPRVWVWPYGTADGTSLTVVGEEGYEMALTLDDGLDTLDNLMSSPRFLVASDPDGTHFANSIVSVQAQSAMRVVHVDLDNVYDPDPAQQDINLGKLVQRMADLGANTVFLQAFADPKGDGLVHSLYFPNRHLPVRADLFDRVAWQLRTRAHVKVYAWMPVLSFELDAKLPRVTRWDPKTGTTSVDPKQYKRLSPFNPEVRKIIGEIYEDLARLTSVDGILYHDDAVLSDFEDATSDALKAYAAQGLPGTVAALRDDPAAMQRWTRFKSRYLIDFTNELTAKVRAIRGPQVLTARNIFAEPMLNPESEAWFAQNLDDFLATYDWTAPMAMPLMEKQTQAQSGPWLEALVATVKKRPGALNRTVFELQARDWNKKDQADIDAAHLADWMGRLKRQGATSFGYYPDNFLDNLPDLKTVRPALSNKWNP
>LR134318.1|VEF06651.1|187479_189960_+|outer-membrane-protein-PgaA
MPRIDGPVLHRGLRPLFRFALCSQLLWPLVALADTPYDEMVRDARAGHYTPALTVLRQVPPGQASDGQISDHLQIASWAGLDAEVVKVYETQGRDRALPVQALTATARAYRNLKRWDQATQVYNKALALEPDNADLQLGLALTQADAGKPDQAVSRAQALVAAKPDDPSRRLALGYALGRAGKQYDALFEFDQAFIRAGNKPEVAREYVVALQKARLPEPALRLASQRPGLIDPVTLRRLEGDLAAERVRLAELATRSEKERYVIADRALADYDKLLATWTPDATAHDDVTRWRIDRMGALRARARTADVIREYEILQAEGVQIPTYARRWVAASYLDQREPEIATDLYRQVLSAPDADVGDRLEDTTALYYSLLESDRADEARKVAEEAAKAQRPRVELKGLPVGNPNDEWMDAQQLAAQAGTYSADLPHGEERLQALVEQAPGNLGLRLAQADLYLAREWPRRAESQLKESESMAPRDAGLEVAQARTAMQLQEWRQNDALVDDVVARFPDNRQVQRLAREREVHDMAELRVEAYGGKANGGGSGDAGAVSGSRDFGIQSTVYSPPINEDWRVFAGAGYATGDFAEGTGHHRFQRVGLERRTRDMTLEAEVSNHDYGFGDKQGARLAIARDINDHWQYGGSLEYLSAETPLRALNSDIKANGGSAFLRWRANESREWRVSVSPSHFSDGNNRVEALLTGREGIYSAPNIQVDAGLEVGTSHNSKSDDVPYFNPKSDFSVMPLINANHVLYHRYETSWSQQFQAGAGTYSQRDHGTGGMALLGYGQRYAWNDVFDVGGMLSVINRPYDGDRETDLRLLVDLTFRF
>LR134318.1|VEF06648.1|185737_187243_+|GTP-binding-protein
MNKSAGVLLGIVVAIGAISAGGAWYTGTKIEGVLNNAVSNANKELQTAMAGSNGTASLELVSLERHTFTSTAHYRLKGEGEMFGEGPVELLFVDHIEHGPLPFSRLVSLKWLPVMATSNYELEKSPATEKWFAATKGAAPLKGVTNIGYDESTTSTLDLLPFETALDEQSNLKFSGLTMDISASAQAQKVKANGYMDNLKLSTVAEDQTPVQVELNGLTLASNLAKSSYGYYTGENTLELTNSKTTFGPKQSVLGVKNFEMKNLTEENGSNASGRADYKVGEVSLNDKKIGSANMAMSLKNLDIPSTMSLMQIYQTKLQPYEKAAAEAAAQGLPAPELNLTEAENAQVKADLQKLLAAGPQIALENLSFNTANGESRANLVIDLTKPQSLDLPPDQLGKQLVALLDLNIQVSKPMLVDLLSVQAQLDGQTDAKAIVDQSKEAADMFAGMAVGSQLAVADGTNVVTKLHYAANQVEFNGQKMTVEQFVGFLMSKFAGVTQVQ
>LR134318.1|VEF06645.1|184853_185489_+|NADH:ubiquinone-oxidoreductase-subunit-2
MKNPYALGFWCALVALVLLSATYFYGIMLAHQIDTAMIFLDSAVALIAVMAIVVVAWASVQVQRVKKRQLERGKILVLIWDTKVALRRVETVFDRYFWGSYWQPGRTFAEVMGELTGTPLEKSLEALKKQCLELDKQIDDEGWHWLNNARELSDVATAMARERYQLDFCDVRADSAGGAVIDRDFEVLVYTWTARLKTFDHQLDEIEVQYS
>LR134318.1|VEF06642.1|183318_184761_+|multidrug-efflux-outer-membrane-protein
MSRALLIAGLGVMLSACQMVGPDYQVPADAAVQRKDIQGELAVAGKPVVSAPVPTDWWRLYKDPRLDQLVQQAMASNTDLRVAAANLSRARAQVDEAEAAGGWSGGVKMGAERLQESGQAFLLPEKVPVANIADIGISASYQFDLWGTLQRGIEAAKANADATQAAADTARITLVADVVRAYTQVCAANEEREIAEHSLDLQSQSTKLIQRLRDAGRGDETQVTRSQTQFKSLRADLPRYEAARQAGLFRLSMLLAKPVDQLPAGTASCAELPKIAQLVPVGDGAALLKRRPDIRQAERRLAAATAGIGIATGELYPDISIGATIGTVGIIDDLGDPSTNRWGFGPSLSWKVPTNGARARIREAEANTQGALAHFDGVVLNAIRETQTGLAQYSALLQRRDALAEAEQSAKLAAEQTHRFFQAGRESFLADLQATRTYTDVTAQLAAANTQVAMSQIDLFLALGGGWESGRTNTSHASKP
>LR134318.1|VEF06639.1|182434_183322_+|secretion-protein-HlyD
MKKPFLTIGRVVLTLLIVTFAVVLVWRMVMYYMFAPWTRDGHIRADIIQIAPDVSGLIQQVEVKDNQLIKRGQVLFSIDQDRFKLALRQAKAAVADREETLAQAQREAKRNRGLGNLVPAEQLEESQSRVARAQSALAEALVAVDSAQLNLDRSVIRSPVDGYVNDRAPRPQEFVTAGRPVLSVVDSNSFHIDGYFEETKLDGIHVGQSVDIRVIGDRARLRGHVESIVAGIEDRDRTSGSNLLPNVNPAFSWVRLAQRIPVRIAFDEVPADFRMIAGRTATVSIIDDQHEEPQP
>LR134318.1|VEF06636.1|182228_182438_+|membrane-protein
MIGDLDISGIFLPTLLVLMGITYVLFVLVHGVLQRLHFYRLVWHRALFNVALYAVLLYGVDSLSRYLMT
>LR134318.1|VEF06633.1|180240_182232_+|fusaric-acid-resistance-protein
MIALYIALLMQMPRPYWAMATVYIVSSPFLGPTSSKALYRAAGTFLGAAAAVLFVPMFVQSPYVLVVVVALWTGILLFMSLHLRTANSYALMLAGYTLPLIALPVVDNPLAVWDVAEARTEEIFLGIVVAAVVGAMFWPRRLAPVFNDAVSKWFADATSYSLKFLSRDVQPEEVTALRMAMVANFNSLELMIGQLPHEGARPQTVRNTKELRGRMIHLLPVIDALEDSLYALERRTPELVEKFQPLLTATREWLGHADADLDRWQALRHPLDALQPSAEALEDRRQLLFSNAIYRLGEFIDLWQDCRSLQDAILCERQDSWRAVYRHWRLGRLTPFIDRGLMLYSVASTILAIIVASVLWILLGWPDGGSAVILAAVACSFFASMDDPAPQIYRFFFWTGMSVLFASLYLFLILPNLHDFPMLVLAFSIPFICVGTLTVQPRFYLGMLLTLVNTSSFISIQGAYDADFFAFVNSNLAGPLGLLFAFIWTLVARPFGAELAAKRLTRFSWEDIVSMTEPASLAEHRQLGVQLLDRLMQHLPRLALTGQDTGIAMREVRVGLNMLDLLAYTPRVTGAPNALLQQVVAEVGEYFRACLKSGERLPAPSGLLMTLDRTRRALNGHGDDETRLHLLHALSGLRLALLPGVEFVSSAEPEEPLPDGAPL
>LR134318.1|VEF06661.1|194042_195566_-|FAD-dependent-pyridine-nucleotide-disulfide-oxidoreductase
MSLHRVAHAQDVPQDRGLQVEIGDCKIVLLRANGELRAFQGQCPHAGAPLAEGALCHGRLICPWHKAAYRAEDGGLCEPPSLDSLKRYPLELRGDEVWVDDQPLPDQHTPPADDPRTFVVVGAGAAGTACAAALREKGFGGRIVLVDGEPDAGYDRTVLSKFVLAGEMTAKEAPRLRDEAFYQAQRLERVQGEVTSVDAPGKVLQLNNGGTLRYDAVVLATGGAPNPLKLPGADLSNVFVLRSKAQAEQIMQAAQPGQRAVIIGDSFIALECASALREYGLDVTVLARHATPFAKQFGDAVGKAIRALHEAHGVKFISEHEAMEILGEDKVDGVLLDNGLRLAADLVLAGVGVHPATEAFASLPQEDDQSLRVDGDMRVTESVWAIGDIATFPLSGEPTRIEHWRLAQQHARIAAANMLGGEEHYLDVPFFWTYHFGKNYDYLGHAKEWDEVEFSGEPENPPFIGLFAKDGIVVAAVACDKQRAMALLAERMKQPLRMKEAWTLIQA
>LR134318.1|VEF06664.1|195627_196266_+|PBP-family-phospholipid-binding-protein
MLLPRHERYSYSLRADDGLTAQGVPGMTRLTSLNPWLAAIAVTLCVQVSAQAQERFTLSIPGVSDNRLFTSAAASDAPGCGGKNQSPALSWNAGPTGTQSYAIVMHDPDGQKGLGVDHWIHYGIKPTTHQIAAGVGAKSALEGVGGTNSKGNTHYMGPCPPVGDSAHHYIIQIYALDLGPDALPAGLTRAELMEKIKGHVLRNSSAVRRYHR
>LR134318.1|VEF06667.1|196373_196580_+|Uncharacterised-protein
MAAKIDRIAQLLSCPQKGEEMRRAITEARKEFLLNQPEEDLVQEDEVFDEVEEEGDDDEYDEFDWTTE
>LR134318.1|VEF06670.1|197166_198609_+|succinate-semialdehyde-dehydrogenase
MQLKDTQLFRQQAFIDGAWVDADNGQTIKVNNPATGEILGTVPKMGAAETRRAIEAADKALPAWRALTAKERAGKLRRWFELMIENQDDLARLMTLEQGKPLAEAKGEIVYAASFIEWFAEEAKRIYGDVIPGHQPDKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSAFALAELAQRAGIPAGVFSVVSGSAGDIGSELTSNPIVRKLSFTGSTEIGRQLMAECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRLYIQDAVYDAFAEKLKVAVAKLKIGNGLEDGTTTGPLIDEKAVAKVQEHIADAVSKGATVLAGGKAMEGNFFEPTILTNVPKNAAVAKEETFGPLAPLFRFKDEAEVIAMSNDTEFGLASYFYARDLGRVFRVAEALEYGMVGVNTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCLGI
>LR134318.1|VEF06673.1|198795_200073_+|4-aminobutyrate-aminotransferase
MSKTNAELMARRTAAVPRGVGQIHPIFAESAKNATVTDVEGREFIDFAGGIAVLNTGHVHPKIIAAVTEQLNKLTHTCFQVLAYEPYVELCEKINAKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGIFRALYPNELHGVSIDDSIASIERIFKNDAEPKDIAAIIIEPVQGEGGFYVAPKEFMKRLRALCDQHGILLIADEVQTGAGRTGTFFAMEQMGVAADLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYAGSPIACAAALAVMEVFEEEQLLDRCKAVGERLVTGLKAIQAKYPVIGEVRALGAMIAVELFENGDSHKPNAAAVASVVAKARDKGLILLSCGTYGNVLRVLVPLTSPDEQLDKGLAIIEECFSEL
>LR134318.1|VEF06676.1|200210_201422_+|response-regulator
MTAVELPAAPRVLIAEADPWSRDLLKQVLLNVRCDARLDLCADGQQALSMLGEIPYDLAIVDWELPGVDGLNVLRNVRQRKRNPPLPFILMSSRNDSASVREAIPLAPTAYLTKPLNMESLTERLQGLLLNAGEEVFCEVPALALGMTLSVFLERRREQADGAPLMTDVQLAVKRSLNPGGLDLKLLEEEIRTDPQITAVLIAAANSAAQHHGAPVQTLAQALHRLGTGQSMNLILGLALKRSARLSDPCLADYAERYWELSLHTAEYARTLARLLDLDQERCYCAGMLHCLGDLALLRCLQEWQQAGGTLDEWEEVGEALAEFGAAYGSALRTRWRLPLELRELIAAVYQLGGGVYSREALVMNMAAQMARMTEHEGIEELAKSRTARLLKIGLPELLRMRK
>LR134318.1|VEF06679.1|201556_202546_-|diguanylate-cyclase
MVNNNQKDSCFPQWPEAAQTLMALMHAQGEVARLSEREQLFSSLLVSVNAVLWAFNWETRQVLYVSPAYERIFGRSAALVLADYNQWRDSIYPDDLDYAERSLAEVLHKGAVEDREYRIIAADGQVRWLSDKCFINRQDEPGQPVIIVGIAEDITDKKHMEAELQRLATTDVLTQSSNRRHFFECANREFQQARLQGSPMAFLLLDIDDFKVINDTYGHQEGDNVLQRIAECGRGSLRRGDVFGRIGGEEFAAVFPGCAPDMAMQVAERLQQEIQRLRFNHDGQTFGITVSQGLTSLTEDDESLDSLFARADMAMYEAKRQGKNRIISA
>LR134318.1|VEF06682.1|202774_203956_-|stearoyl-CoA-9-desaturase
MWYEGFLGLSAWSLVAVTLLMTHVTIVAVTVYLHRYSAHRSLELNAGLKHFFRFWLWLTTAQNTREWTAIHRKHHAKCETEDDPHSPVIKGLSTVLRTGAELYRSEAQNPETLRIYGKNCPEDWIERNVYSRYPLLGVAIMGGIDLMLFGTIGITIWAIQMMWIPVWAAGVINGLGHAVGYRNFECRDAATNLVPWGILIGGEELHNNHHTYPNSAKLSVKKWEFDLGWAWIKVFCFLRLAKVQRVAPIAHRVEGKGNLDMDTAMAILNNRFQIMAQYRKLVIGPLVKQELAKVDHSVRHQFHRAKRLLSRETSLLEDRHHLRIQNMLEHSQALKVIYEKRLALQQIWVKTSSNGHDMLAAIKEWIHEAEASGIQSLREFADQLKTYSLRPAA
>LR134318.1|VEF06685.1|204102_206022_+|PAS/PAC-sensor-containing-diguanylate-cyclase/phosphodiesterase
MSATYRDALRAALLYLVLAVVWLLATDHLLNNFFDDSVDRARWQLINGYALAAVSAGLIFLARARLCAFLGIGARLRERQADRERLRQAAAVFDCTREGVLVTDHRGLIVHVNRAFMAITGYQREEVLGQQPSLFKSGHHPPEFYQVMFATLEKQGEWSGEIWNRRKSGEIYPQWQTIRVICDDQRQLSHYVAVFSDITAIKDSEHELKHLAHHDPLTDLPNRLLFSDRAEQALASAQVHKRGCALLMLDLDHFKMINDSLGHNVGDRLLKALALRLQELFGPGITLARLGGDEFAVLAESCPQPGQAAALAQRILDALKKPLHVDGHELFINASIGISLFPNDALSAEQLLRNADAALFKAKSNGRDGYALYTEELTLHAQQRVEIAFELRRALEQQELRVHYQPVHELKGSRLVGVEALVRWQHPQRGLVSPAEFIPIAERTGLIAEIDAWVMQQACRQMCEWQQAGVVLSFVAVNVSSRLFARRELYEQVAQVLDETGLAPAYLELEVTESAVMDDPEVALEQMHRLRELGIRLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVIIALARSMGMQVHAEGIEQVEQAAFLLEQACDLGQGYWFGRPSPAADIDWARAPLIG
>LR134318.1|VEF06688.1|206260_206443_+|organosulfur-compounds-A
MSASLRSVDGQDESTILREIQSALRDLRFGAVEITVHNAQVVQIERKEKFRLQQPGKQPG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR134318_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134318_2

1348018-1348112

Orphan

Consensus_repeat	Method
AAAAACCCTCACTATAAGGGGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134318_2

>merge|LR134318|2|1348018-1348112|CRISPRCasFinder
AAAAACCCTCACTATAAGGGGAACCCAAGGATGGGACCCCGAGTGTGTGCGTGTGAGGTGAGGCCTGAATTAAAAACCCTCACTATAAGGGGGAC

>LR134318|2|2|1348018-1348112|CRISPRCasFinder
AAAAACCCTCACTATAAGGGGAAC	CCAAGGATGGGACCCCGAGTGTGTGCGTGTGAGGTGAGGCCTGAATT
AAAAACCCTCACTATAAGGGGGAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134318.1\|VEF09309.1\|1340509_1340722_+\|Phage-tail-X	unknown	unknown	gnl\|CDD\|227337
LR134318.1\|VEF09334.1\|1351334_1351559_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF09317.1\|1344716_1345187_+\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|234646
LR134318.1\|VEF09318.1\|1345230_1345506_-\|decarboxylase-family-protein	unknown	unknown	unknown
LR134318.1\|VEF09311.1\|1340731_1341763_+\|Phage-protein-D-like	unknown	unknown	gnl\|CDD\|222877
LR134318.1\|VEF09326.1\|1348621_1348903_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF09338.1\|1351870_1352842_-\|decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|224527
LR134318.1\|VEF09320.1\|1345774_1347091_+\|putative-phage-integrase	unknown	unknown	gnl\|CDD\|271184
LR134318.1\|VEF09340.1\|1353191_1353386_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF09314.1\|1343068_1343569_+\|CinA-like-protein	unknown	unknown	gnl\|CDD\|334938
LR134318.1\|VEF09316.1\|1343652_1344708_+\|recombinase-A	unknown	unknown	gnl\|CDD\|236476
LR134318.1\|VEF09328.1\|1349079_1349466_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF09322.1\|1347087_1347420_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF09330.1\|1349507_1350518_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF09332.1\|1350681_1351290_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF09344.1\|1354001_1354748_+\|dtw-protein	unknown	unknown	gnl\|CDD\|225690
LR134318.1\|VEF09342.1\|1353386_1353812_-\|putative-NADPH-quinone-reductase-(modulator-of-drug-activity-B)	unknown	unknown	gnl\|CDD\|338874
LR134318.1\|VEF09336.1\|1351567_1351672_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF09313.1\|1342482_1343001_+\|bacteriophage-signal-peptide-protein	unknown	unknown	gnl\|CDD\|281263
LR134318.1\|VEF09312.1\|1341937_1342504_+\|Pyocin-R2_PP,-lytic-enzyme	unknown	unknown	gnl\|CDD\|225720

Protein	Function_ID	Function_description	E-value
LR134318.1\|VEF09338.1\|1351870_1352842_-\|decarboxylase-family-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	2.57869e-55
LR134318.1\|VEF09309.1\|1340509_1340722_+\|Phage-tail-X	gnl\|CDD\|227337	COG5004, COG5004, P2-like prophage tail protein X [General function prediction only].	1.0527e-09
LR134318.1\|VEF09344.1\|1354001_1354748_+\|dtw-protein	gnl\|CDD\|225690	COG3148, COG3148, Uncharacterized conserved protein [Function unknown].	5.26176e-94
LR134318.1\|VEF09317.1\|1344716_1345187_+\|recombination-regulator-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	2.41438e-54
LR134318.1\|VEF09311.1\|1340731_1341763_+\|Phage-protein-D-like	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	1.06793e-81
LR134318.1\|VEF09320.1\|1345774_1347091_+\|putative-phage-integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	4.32748e-38
LR134318.1\|VEF09314.1\|1343068_1343569_+\|CinA-like-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	2.216e-64
LR134318.1\|VEF09313.1\|1342482_1343001_+\|bacteriophage-signal-peptide-protein	gnl\|CDD\|281263	pfam03245, Phage_lysis, Bacteriophage Rz lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.	0.000112659
LR134318.1\|VEF09316.1\|1343652_1344708_+\|recombinase-A	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
LR134318.1\|VEF09312.1\|1341937_1342504_+\|Pyocin-R2_PP,-lytic-enzyme	gnl\|CDD\|225720	COG3179, COG3179, Predicted chitinase [General function prediction only].	2.32641e-54
LR134318.1\|VEF09342.1\|1353386_1353812_-\|putative-NADPH-quinone-reductase-(modulator-of-drug-activity-B)	gnl\|CDD\|338874	pfam13652, QSregVF, Putative quorum-sensing-regulated virulence factor. This is a family of short ~14 kDa proteins from Psuedomonas. The structure of UniProtKB:Q9HY15 a secreted protein has been solved and deposited as Structure 3npd. It comprises one structural domain with five beta-strands and five alpha-helices. Various comparative structural prediction methods plus its genomic location point to the protein forming a functional dimer with its adjacent genomic partner, UniProtKB:Q9HY14, in pfam12843. Together these might be regulated by the other product from the PotABCD operon, namely the putrescine-binding periplasmic protein UniProtKB:Q9HY16. which has been implicated in quorum-sensing. QSregVF is certainly up-regulated in quorum-sensing, and is predicted to be a virulence factor.	8.77716e-60

>LR134318.1|VEF09322.1|1347087_1347420_+|Uncharacterised-protein
MSKVTITNNPLVALRLGLPFRLCRLPDKGPQFGHGVYIPPGHLQRFMTMHAMSLIEDLEALAIRDEMMQEEVDRLRLSIDTRRATCGLSPRALVGHTEQSDIVGRVEVAL
>LR134318.1|VEF09320.1|1345774_1347091_+|putative-phage-integrase
MQISKDILKTLSLFHLDNPKASWRELKERLITIAEECLTMAHGDDSLVAYEMIYDELRLSLREASAKEPLTVDQQRAAGKYVEVLEAAQERLKGRPQKLVEIIRELKGESCGTSMAPYLPLSVLPSTPVALSTPMTFKTLSGLYMDERKDSIQASTMRDVKSSCEAIGSILGDLNLRTHTREDMRNLRDKLLEDRKASTVKKLLTRFSTVMDWAVNNGYLEKSLDKGLKPTKGADSSREPFSRDQVKALMDHAKTLPVDAWQRWALSLGVITGARIEEIRQLTKADIKEVPGVSGANRTWVIDINRNDGKSVKTNSSVRVIPLTDGAYGFDLQAFLEFVAKADSRLFTLGAGQFSGVLNGTLREVLGLKTDRTQTFHSLRHSLAGALKAAEVPVGTAESILGHSSGSISYDLYGAGSAVEVGRMAEALRAAFKMEAAQ
>LR134318.1|VEF09318.1|1345230_1345506_-|decarboxylase-family-protein
MNHKLSDQALEQMQEAFADLCLSDRFHQHAYSGEEHDEAQYSHLARLAFAFNARTHGRLRELIDYINLPQNWADSPPQQAIQRSREPSKMI
>LR134318.1|VEF09317.1|1344716_1345187_+|recombination-regulator-RecX
MTTAVLDTLVAVRRTAMDLLARREHGRVELTRKLRQRGAEAEMIETALDRLTEEGLLSEARYLESFVSYRARSGYGPLRIREELSQRGLQRPDIELALRESGINWQEQLRETWQRKFAGHLPIDAKERAKQGRFLAYRGFSMEMINRLFSGRGVDD
>LR134318.1|VEF09316.1|1343652_1344708_+|recombinase-A
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEKQLRDKLLTPAVIDSKASAVKETEDDLADADI
>LR134318.1|VEF09314.1|1343068_1343569_+|CinA-like-protein
MKETTQLAADLGRRLQVLNAHVTTAESCTGGGIAEAITRIPGSSAWFEAGYVTYSNRQKTRQLNVPGDLFETVGAVSREVVEAMVRGAQQQSLAHFAVAVSGVAGPDGGTPNKPVGTVWLAWAVGDAVYSEVQHFPGNRDEVRRQTVKAALEGLARLAAREIENQG
>LR134318.1|VEF09313.1|1342482_1343001_+|bacteriophage-signal-peptide-protein
MPIPWRVIGISLLALGAFAAAWQFQGWRYGQQLAEQARFNAETLNQLTLSAATAQRVEQDKRLALAQRLATSEQSHYRALSDAQRDQDRLRDRLATADVRLSVLLDTSEIAPGCNVPPAAGAGRVDPATVRARLDPAHAQRIIAITAAGDRGLIALQACQAYVRALAPQHFE
>LR134318.1|VEF09312.1|1341937_1342504_+|Pyocin-R2_PP,-lytic-enzyme
MQITENNLIDIMPNARSQAGVFVSALNAAMTRRRIDTPKRMAAFLAQIGHESGQLRYVRELGNNQYLSKYDTGTLALRLGNTPEADGDGQRYRGRGLIQITGRSNYRQCSVGLFGDERLLTLPELLEQPQWAAESAAWFWEQNGLNELADRDQFNTITRRINGGLNGLQDRLEIWARARAVLCQSPGA
>LR134318.1|VEF09311.1|1340731_1341763_+|Phage-protein-D-like
MALGFTPLVQIYGANADLLNKRLISWEHIDAAGIESDQLTLTIDLEGLEGLPNLGGKIGLLVGYQEMDEMVDKGQFKVTRLTPTLFPFRLTLVATAAPFSKDDETGFKQRRTASHGPTTLGQLFSKLVSAHGFSSRVAADVSLIKIAHVDQSNETDMGFLTRLARKYNLVAKPYGDAYVLARPGQIKSISGQKLTDVTLSVTHDNRPGDHAFISATLEEGAREQTQGCKTCFWDAAAAVVRWIETGVAPHKVIRQQQPNEADAIAVGEGEVRKMLRKKFKVKITCPGNPLLTAEGLLLLDDTWPDFMRGRWSIEKVTANGNRENSYRCVIDAACLDPKAEGKD
>LR134318.1|VEF09309.1|1340509_1340722_+|Phage-tail-X
MRKVRSVAGDSVNLLLYRETGRSDDAAEEALWKLNPTLAEHGAVLPAGIWVVLPEFDAQPAAIKTLTAWD
>LR134318.1|VEF09326.1|1348621_1348903_+|Uncharacterised-protein
MTKKIVPRPDASEEHLAIIGSLREAIDVPAKLHLLIDLRSSYKPHREWSREEQYLIDHHRSPLLPKLIASLGAAGVSLRDALSVPLLFKMNAK
>LR134318.1|VEF09328.1|1349079_1349466_+|Uncharacterised-protein
MNINITAVTPSKATVNGQPMAREYVETLLLPLLVAAHGKNYSGILQVAQVFAAAGLSLSASPEAARSYREHMAEKAALEARQIAEAKANAERCRVPTPQEIAEKKAERARQAQAIRERGERLRAQLGR
>LR134318.1|VEF09330.1|1349507_1350518_+|Uncharacterised-protein
MKPFQYKTPERVYTQSVKSLGLTQATFHSSDIRAEEVAASDPAVYALAMQEAADEHLNGEEWREDMNNAFPSEVRPYGSIPTCPQVALMADRSVTFDPRQTYDGRTVTKGVALAGSLVSMEAPEVGVLVSARISILDHTVQFGFTERSMEQTANKVLNDLELTMAGKIAESLESQPSVSKVYVGPLTGTPAAQAEDFLDLIATHLDTYWGRDISEFGVLIPVSLRPVLNRAAQRAGLEDIDELVGTRVQVYSGPDRGIFLAPKAFALLSFRENREGDVWRIELSRNSASLSWELEVSAVVDVMATAMVEVKVNGSDWETTPVALPLIKQIVLSDAP
>LR134318.1|VEF09332.1|1350681_1351290_+|Uncharacterised-protein
MGPVCWSVGANSESKQKENMNMIDIKHKHAAHVIIIEGKPFKANDSGMWDLTDIWRTLKLPKGKQPGKWVDTKKAKTLEQTGNIGSLNKGRAGSVTQATKRATLAYAGWVSDEFEAMVYDAFEAILEMPEVALLVADKMRNMGNDHSAAILERSAFNDRCDWRALKAPHKNTQKGLRAAVAKGNLSLERAIGLGLNRSPLRA
>LR134318.1|VEF09334.1|1351334_1351559_+|Uncharacterised-protein
MSFTLCFTYNNKRVVTKVSVDHLTPYAAVCFALLQSGATNDSSRGGWPDSYEGILEVAKHYGLTNFSFHHSLKS
>LR134318.1|VEF09336.1|1351567_1351672_+|Uncharacterised-protein
MDRLQALYWVCVAVHMALWCVNACRWLYGHLKDP
>LR134318.1|VEF09338.1|1351870_1352842_-|decarboxylase-family-protein
MPYQPNDLLSRHFQESGPDLISQVEAQLSRVSPDSPNIPIYRDMILTVLRMAQEDHNRWNAKITLQALRELEQAFRVLEQFKGRRKVTVFGSARTPVEHPLYAMARELGAALTRSDMMVITGAGGGIMAAAHEGAGRDHSLGFNITLPFEQHANPTVDGTGNLLPFHFFFTRKLFFVKEADALVLCPGGFGTLDEALEVLTLIQTGKSPLVPVVLLDVPGGTFWQGALDFIRQQLEENRYILPTDMKLMRLVYSVDEAVEQINQFYSNYRVSRDLIELRNLAQVAELMIRSAMERKESRGLHYTLDYPEMLPEAKDTILTPTF
>LR134318.1|VEF09340.1|1353191_1353386_+|Uncharacterised-protein
MARVVLEIDTQLYRMLKASAEANQVSLEEECCRRLAGGERRSRYLQALLAELRAEDEQRRANSR
>LR134318.1|VEF09342.1|1353386_1353812_-|putative-NADPH-quinone-reductase-(modulator-of-drug-activity-B)
MLRLIVPTAAILLASSFTAQAASLSEQNLNRELRNVAAQSSVGTPRAINEDILDQGYTVEGTQLINHLSVQKSHADKMRADPKAVYFQLGASVCNNPSFRKLMAKGAIMRYDFTEVKTNKAIGSASYQESDCPKAGPAKKK
>LR134318.1|VEF09344.1|1354001_1354748_+|dtw-protein
MNHASNAVARLRDQREDEGIKPIQARGFRSERCRDCRVIISHCLCAWRPNVETRSGVCLIMTGKEVFKPSNTGWLIADVVRDNHAFIWSRTEPDPQMLALLNDPQWQPYLVFPGEYVEPSRVTNTVAVDHSKRPLFILLDATWTEARKIFRKSPYFDRLPILSLLPDKLSRYRLRRSTRSEHLCTAEVAALCLELAGDSDAASALDAYFDVFSQHYLGAKQQLDMNESTPAHAELLPYIRKPQPELAQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR134318_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134318_3

2352280-2352397

Orphan

Consensus_repeat	Method
TGTAGGAGCTGCCGAAGGCTGCGATCTTTTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134318_3

>merge|LR134318|3|2352280-2352397|CRISPRCasFinder
TGTAGGAGCTGCCGAAGGCTGCGATCTTTTGACCTTCGTTCCCACGCTCCGCGTGGGAATACACAAACCCCCACCGCATAACCCAATGTAGGAGCTGCCGAAGGCTGCGATTTTTTGA

>LR134318|3|3|2352280-2352397|CRISPRCasFinder
TGTAGGAGCTGCCGAAGGCTGCGATCTTTTGA	CCTTCGTTCCCACGCTCCGCGTGGGAATACACAAACCCCCACCGCATAACCCAA
TGTAGGAGCTGCCGAAGGCTGCGATTTTTTGA

Protein	Signature genes	Signature genes Name	Protein_function
LR134318.1\|VEF10527.1\|2364990_2366358_-\|xanthine/uracil-permease	unknown	unknown	gnl\|CDD\|274468
LR134318.1\|VEF10523.1\|2357831_2359271_-\|dihydropyrimidinase	unknown	unknown	gnl\|CDD\|236240
LR134318.1\|VEF10522.1\|2356274_2357642_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|236967
LR134318.1\|VEF10517.1\|2350302_2350773_+\|Fe-S-protein	unknown	unknown	gnl\|CDD\|225850
LR134318.1\|VEF10521.1\|2354999_2356274_-\|dihydropyrimidine-dehydrogenase	unknown	unknown	gnl\|CDD\|236237
LR134318.1\|VEF10524.1\|2359907_2361392_+\|transporter-membrane-protein	unknown	unknown	gnl\|CDD\|271378
LR134318.1\|VEF10518.1\|2350730_2351507_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|236871
LR134318.1\|VEF10516.1\|2347225_2349850_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
LR134318.1\|VEF10513.1\|2342639_2344052_+\|major-facilitator-transporter	unknown	unknown	gnl\|CDD\|340879
LR134318.1\|VEF10510.1\|2340011_2340863_-\|Allergen-V5/Tpx-1-like	unknown	unknown	gnl\|CDD\|225218
LR134318.1\|VEF10526.1\|2363588_2364977_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|237088
LR134318.1\|VEF10529.1\|2367770_2368355_-\|phenylacrylic-acid-decarboxylase	unknown	unknown	gnl\|CDD\|223241
LR134318.1\|VEF10515.1\|2345036_2346653_+\|putative-L,D-transpeptidase-YcbB	unknown	unknown	gnl\|CDD\|225536
LR134318.1\|VEF10520.1\|2352645_2354808_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF10509.1\|2337453_2338452_-\|molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|237364
LR134318.1\|VEF10514.1\|2344172_2344886_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379310
LR134318.1\|VEF10528.1\|2366607_2367651_-\|cobalamin-synthesis-protein/P47K	unknown	unknown	gnl\|CDD\|223597
LR134318.1\|VEF10511.1\|2341063_2341684_+\|cell-wall-hydrolase,-SleB	unknown	unknown	gnl\|CDD\|377847
LR134318.1\|VEF10512.1\|2341680_2342568_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176149
LR134318.1\|VEF10525.1\|2361551_2362835_+\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|237250

Protein	Function_ID	Function_description	E-value
LR134318.1\|VEF10527.1\|2364990_2366358_-\|xanthine/uracil-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.32133e-148
LR134318.1\|VEF10523.1\|2357831_2359271_-\|dihydropyrimidinase	gnl\|CDD\|236240	PRK08323, PRK08323, phenylhydantoinase; Validated.	0
LR134318.1\|VEF10522.1\|2356274_2357642_-\|oxidoreductase	gnl\|CDD\|236967	PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional.	0
LR134318.1\|VEF10517.1\|2350302_2350773_+\|Fe-S-protein	gnl\|CDD\|225850	COG3313, COG3313, Predicted Fe-S protein [General function prediction only].	1.10188e-19
LR134318.1\|VEF10521.1\|2354999_2356274_-\|dihydropyrimidine-dehydrogenase	gnl\|CDD\|236237	PRK08318, PRK08318, NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.	0
LR134318.1\|VEF10524.1\|2359907_2361392_+\|transporter-membrane-protein	gnl\|CDD\|271378	cd11485, SLC-NCS1sbd_YbbW-like, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily, YbbW-like; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. This subfamily includes the putative allantoin transporter Escherichia coli YbbW (also known as GlxB2). NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0
LR134318.1\|VEF10518.1\|2350730_2351507_-\|universal-stress-protein	gnl\|CDD\|236871	PRK11175, PRK11175, universal stress protein UspE; Provisional.	2.0961e-22
LR134318.1\|VEF10516.1\|2347225_2349850_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
LR134318.1\|VEF10513.1\|2342639_2344052_+\|major-facilitator-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.20364e-46
LR134318.1\|VEF10510.1\|2340011_2340863_-\|Allergen-V5/Tpx-1-like	gnl\|CDD\|225218	COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown].	9.44239e-45
LR134318.1\|VEF10526.1\|2363588_2364977_-\|amidohydrolase	gnl\|CDD\|237088	PRK12393, PRK12393, amidohydrolase; Provisional.	0
LR134318.1\|VEF10515.1\|2345036_2346653_+\|putative-L,D-transpeptidase-YcbB	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	2.92732e-93
LR134318.1\|VEF10529.1\|2367770_2368355_-\|phenylacrylic-acid-decarboxylase	gnl\|CDD\|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	2.79867e-98
LR134318.1\|VEF10509.1\|2337453_2338452_-\|molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|237364	PRK13361, PRK13361, GTP 3',8-cyclase MoaA.	0
LR134318.1\|VEF10514.1\|2344172_2344886_-\|Uncharacterised-protein	gnl\|CDD\|379310	pfam13645, YkuD_2, L,D-transpeptidase catalytic domain. This family is related to pfam03734.	6.82269e-97
LR134318.1\|VEF10528.1\|2366607_2367651_-\|cobalamin-synthesis-protein/P47K	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	8.91328e-121
LR134318.1\|VEF10511.1\|2341063_2341684_+\|cell-wall-hydrolase,-SleB	gnl\|CDD\|377847	pfam07486, Hydrolase_2, Cell Wall Hydrolase. These enzymes have been implicated in cell wall hydrolysis, most extensively in Bacillus subtilis. For instance Bacillus subtilis steB is expressed during sporulation as an inactive form and then deposited on the cell outer cortex. During germination the the enzyme is activated and hydrolyzes the cortex. A similar role is carried out by the partially redundant Bacillus subtilis CwlJ. It is not clear whether these enzymes are amidases or peptidases.	1.06488e-28
LR134318.1\|VEF10512.1\|2341680_2342568_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176149	cd08460, PBP2_DntR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.84032e-89
LR134318.1\|VEF10525.1\|2361551_2362835_+\|allantoate-amidohydrolase	gnl\|CDD\|237250	PRK12893, PRK12893, Zn-dependent hydrolase.	0

>LR134318.1|VEF10518.1|2350730_2351507_-|universal-stress-protein
MQAIRSLLVVIEPEHPESLALKRAKLIAGVTQAHLHLLVCDKKHDHAGLLSVLKSALTAEGYSVTTEQAWNESLHETIIDVQQAEGCGLVIKQHFPDSSLKKALLTPADWKLLRHCPTPVLLVKTAGSWKDKVILAAVDVGNVDGEHRHLHTTIIDHGYDIASLAKAHLHVIAAHPSPMLSATDPTLQLSETIQARYREQCRAFQAEFEVDDEHFEDQKIAAFGSSYMGMRSTCRSCRRLRSFDVQAPKASLRNPGAM
>LR134318.1|VEF10517.1|2350302_2350773_+|Fe-S-protein
MPNQTIKTPCVGLCSTVYGDLVCRGCKRFHHEVIHWNGYDEEEKRAVWLRLEQLLSQVMAAKVEIFDSARLRAQLEQRKIRFVPHQSEYCWAYQLIARGARVIVNLEAYGMVLLPEFRDWNLPELRDAIDREFFLLSEAHYQRYIAPGFLKDAFGA
>LR134318.1|VEF10516.1|2347225_2349850_-|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MRVITVLEAYRKHIEERAALGIVPQPLNAEQTAGLVELLKNPPAGEEEFLVDLITNRIPPGVDEAAYVKAGFLSALAKGEVSSPLLDKKRAVELLGTMQGGYNIVTLVDLLDDAELAPVAAAQLKHTLLMFDAFHDVAEKAKNGNAHAKAVLQSWADGEWFKNRPTLADKISLRVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKMARDGIVPDQQGAIGPMKQIEEMRGQGFPIAYVGDVVGTGSSRKSATNSVLWFFGDDVPYVPNKRAGGFCFGSKIAPIFYNTMEDAGALPIEFDVSNMNMGDVIDLYPHAGKVCKHGTDEVITTFEMKTPVLLDEVRAGGRIPLIIGRGLTEKARAELGLPPFDLFKKPEAPAESTKGFTLAQKMVGKACGLAEGQGVRPGTYCEPKMTTVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPIDVTTHHTLPDFIMTRGGVSLRPGDGIIHSWLNRMLLPDTVGTGGDSHTRFPMGISFPAGSGLVAFAAATGVMPLDMPESILVRFKGKMKPGITLRDLVHAIPYFAIQNGLLTVEKKGKKNAFSGRILEIEGLEGLTLEQAFELSDASAERSAAGCTIKLSKESITEYLNSNITLLRWMIGEGYGDARTLERRAQAMEAWVANPELMEADADAEYAEIIEIDLAEINEPVLCAPNDPDDARLLSSVAGEKIDEVFIGSCMTNIGHFRAAGKLLDQVKGQLPTRLWLSPPTKMDAHQLTEEGYYGIYGKAGARMEMPGCSLCMGNQARVEPNSTVVSTSTRNFPNRLGDGANVYLASAELASVASILGRLPTVEEYMEYAGKIDSMAADIYRYLSFDQIAEFREAAANANIPVVQA
>LR134318.1|VEF10515.1|2345036_2346653_+|putative-L,D-transpeptidase-YcbB
MFKKYACYLSICLIAAPFVACADEPLPPLQTLATPLAELPVEPQSPLQSVLISLSQSCPTIGTQLNGPALAQLQAFYQQQDWMPLWAGEAARLPALRAQLQLLADDGLDAKRYPVASVAPQDGELCADIEISRYYLQALQDLHFGRLLQSHFEPLWHADDTLRDRQSELLAIAVPGMHDIAAAFDLARPRLAQYQNLRQLYAAQRLQALPQWQPVGNGPLLRPAMEDKRVPELAQRLFSEGYLTHAVATPDNAYDGVLVDAVKSFQANHSLQADGVVGPGTIAELNISPLTRREQLRVNLERFRWMSQDLEPDGLLVNVAAAELTLYQGGHPVWQTRTQVGRAERQTPLLKSRVTRLTLNPTWTVPPTIWKEDKLPAIRKDQTFLSRQNLQVLDANGQPLAAADIDWDNPGNILLRQDAGPRNPLGQMVIRFPNPFSVYLHDTPSKALFDKGPRAFSSGCVRVEHPLQLRDLLLSPTEKARTDTLLATGTTHEFRLSAPVPILMTYWTAQVGNDGHVQYAPDIYSRDSALLAGLDRAH
>LR134318.1|VEF10514.1|2344172_2344886_-|Uncharacterised-protein
MLTFLRRLLLTSATLVAVSSPVFAAGYPSPVLYTSLAHAAPELNPQALKGALNAMQCAVNNGAKPSRHLAIIDYSQPSTERRLWIFDLSKQKLVLRDLVAHGSNSGENFATQFSNREGSYQSSLGLFRTQESYSGAHGYSLRMDGLEPGFNDMARDRAIVIHAASYVNPLWSKKQGRIGRSQGCPAVRPQIAKQVIDRLKNGQFMFSWYPDQRWLKSSPYLNCQPQQVASILSTHAS
>LR134318.1|VEF10513.1|2342639_2344052_+|major-facilitator-transporter
MATLLLLRVPMPREPLSNSARWALTSLALSMLMPSLDTSIANAGLPMLAIAFDATFQQVQWIVLAYLLAVTTLIVSVGRLGDGWGRRRLMLIGIALFTIASLACALATELGWLIGARAVQGVGAAIMFALTVALVADAVPRARAGSAMGLLATMSATGTSLGPSLGGLLMEHVGWQAIFLINVPLGLLNAWLVYRYLPADRAVGPRVAFDYPGSAVLVLTLAAYALAMTLEGFTLPLLLASLCGAGVFFVVEKRVKAPLINLSLFSDPRLSSSLALTLLVTTVMMTTLVVGPFYLSRGLGLSHAMVGLTLSVGPLLSALGGVPAGRLVDRFGARRIVPGALFAMACGCALLALLPMALGLPAYVLPIILVATGYALFQAANNTGLMSGVRQEQRGVVGALLGLARNLGLITGAAVMGAVFALAAGNPIQAPATKIGSGFHITFSVALALLVTALIISRAQFKSAPAIDNA
>LR134318.1|VEF10512.1|2341680_2342568_-|LysR-family-transcriptional-regulator
MTAPDLNLLITLDVLLREGSVARAAKCLQLSPSAMSRALARLRDATGDPLLVRAGRGLVPTPRALELRERVSHLAQEAEAVLRPVEVLDPGRLQRTFTLRNTDGFVETFAAALLARIGAEAPGVRLRFVQKADKDSTLLREGRVDLETGVVDDTTDPTLHSRVLFHDHWIGVVRDGHPLSSGGVNVKRFASGQHILISRRGRSSGPVDEALLAYGLTRDIVTSFGGFSAALTLVRETDLIATVPERHTSKLRMGMHSFALPLQMPDISVSMLWHPRTDADPAHRWLRQCVREVCA
>LR134318.1|VEF10511.1|2341063_2341684_+|cell-wall-hydrolase,-SleB
MGLKGLAGCMIFTLWAGAVGATDQAPIKAKAEEKAQVLEEKAADKVSAAPAPKSEAITPTEAQAVDPAGVAPLDDPLTCLARSIYWEAKGKDTPEMEAVASVVMNRLGHEGFPDTVCAVVKQGSESGNCQFSWWCDGRPDQVKEDAEYTLAKEIAGKALNRQLADRSRGALYFHDRNVHPGWAREYRKTAEIGKFRFYKPAGGDAR
>LR134318.1|VEF10510.1|2340011_2340863_-|Allergen-V5/Tpx-1-like
MRFTPPVLRFAAMFAGLLLALPAMAADELQLIESINSYRSQPQRCGSQASNELPPLSADPRLRLPASGAVDLQQAMASASYPMVNVQAITLNGPRDAASAMKAIQESFCQVVLDPQFVDVGVSRADRDWRIVLARPLLTARLGDAQSEGQKLLAQLNVARSQPRQCGNQAFAAAAPLAWNATLGTISQDHSRDMANNSYLDHKDRDGRTPGDRAELAGYSGQLVGENIAAGQDTVSKVVDGWIASPGHCANLMNPQYKELGAAYATDPKSNAGIYWTAMFGAP
>LR134318.1|VEF10509.1|2337453_2338452_-|molybdenum-cofactor-biosynthesis-protein-A
MSERVLIDGYNRRVDYLRMSVTDRCDFRCVYCMAEDMQFLPRQQVLTLEEIYQLAQSFVALGTRKIRLTGGEPLIRPGVVKLCEQIAALPGLRELCLTTNGSQLGKLAAPLFDAGVKRLNISLDSLDPQRFKEMTRTGDLAQVIAGIDAARKAGFTRTKLNVVVMQGRNDDEINDLVQFAIDRQLDVSFIEEMPLGIISEHSRAESFFSSAQVREKIAERYTLIDSAESTQGPSRYWRLAEAPDIRLGFISPHSHNFCGTCNRVRLTVEGRLLLCLGNEHSVNLKAVLRANPGQPHRLEQAIIEAMKFKPYRHNFEVNDDVQVVRFMNMTGG
>LR134318.1|VEF10520.1|2352645_2354808_-|Uncharacterised-protein
MDIKAFALTRPKAPEMLTLDPSDVEAHGGASIKDTETKPFEVVMLSYQQQAKGDVIRLYLNGEFVDDETVIDEQAATSIFVRPGMFQKGLNRLKFHIERTSGNNEFTPKLVLLHRTFSPGGTPPALTLSVSHNSIGPGDANNVSVTVSYKNIQWYDRIFVDCNGARVQHQLLPDSTTPLPAAPKNIVIPIPRTALEDGGNDENFEFKFRVIDYLTNPSGPPTWSDSVSVDVHLDRLSLPMAVFREILSDNNDDPATVDLEKMNGGPLWAQVHLAETIWKSEDSIHLTFTAERAGAVVGTYEQTFDNREPKTNVTWEIPNSKVIADSTVKVVYELIRKGNVIATSDAAVAAVTGAGSTELPPPFLVPPAQSPLDVLAYRDGVKMRIDYPGAQQGDRARLVEVNAPAGAPQFPLVAFNSNKRVNVPLTAAYLAARHGKELEYRWNLNRGGGQAGKSPAVKVSVGRIVDGDERLPMPNVEGELGTDLDIDKLSAGANILVARWLFQVKGAPTFLTLSGVNENGVTTNEVLKGEPASSDNGLTIAAPIEWLHNLKSDSELKITFSTTPYLVKDLANTTIFPERVYNTKLAPKILTENFDIIPNTNITTGHSLDLESMTISYIDGDSVRIAPSANNSGIEKQALTLSGAIPGVAMLTLKSPCSKVTFRHFHGVYAKFFSSDNMLIEERTIYPNGFVEFSAPNISKIELRGLGAGSGQFDNFMFYK
>LR134318.1|VEF10521.1|2354999_2356274_-|dihydropyrimidine-dehydrogenase
MADLSIVFAGIKAPNPFWLASAPPTDKAYNVVRAFEAGWGGVVWKTLGEDPAAVNVSSRYSAHYGNNREVLGINNIELITDRSLEINLREITQVKKDWPDRAVIVSLMVPCVEESWKHILPLVEATGADGIELNFGCPHGMPERGMGAAVGQVPEYVEQVTRWCKTYCSLPVIVKLTPNITDIRVAARAAHRGGADAVSLINTINSITSVDLDHMVALPTVGSKSTHGGYCGSAVKPIALNMVAEIARDPQTQGLPICGIGGIGSWRDAAEFMALGSGAVQVCTAAMLHGFRIVDEMKDGLSRWMDSQGYASIGEFSGRAVGNTTDWKYLDINYQVIAKIDQAACIGCGRCHIACEDTSHQAIASLKQADGTHKYEVIDDECVGCNLCQITCPVAACIEMVPMETGKPFLDWNHDPRNPYHVSA
>LR134318.1|VEF10522.1|2356274_2357642_-|oxidoreductase
MIETLKHLPHPHESAAALAGHFSDLAPPLNARQAHLEASRCLYCYDAPCVNACPSEIDIPSFIRNIHQDNVRGAAQKILSANILGGSCARVCPTEILCQQACVRNNAEECAPVLIGLLQRYAVDNAQFAEHPFQRAAATGKRIAVVGAGPAGLSCAHRCAMHGHDVVIFEAREKAGGLNEYGIAKYKLVDDYAQKELDFLLQIGGIDIRHGQKLGENLTLSELHQQFDAVFLGLGLNASKQLGLPYEDAPGLLAATDYICELRQADDLTQLPLAERCIVLGAGNTAIDMAVQMARLGAHDVNLVYRRGAADMGATDHEQHIAKANQVRLLTWAQPEEVLLDAQGRVRGMRFARTDLVDGRLQTTGETFELAADAIFKAIGQAFDGSALADPLARELKRQGERIEVDENLRTSIPGVYAGGDCTSLDQDLTVQAVQHGKLAAEAINAQLMLNVEAA
>LR134318.1|VEF10523.1|2357831_2359271_-|dihydropyrimidinase
MSLLIRGATVVTHDESYRADVYCADGVIKAIGGNLDIPAGAEVLDGSGQYLMPGGIDPHTHMQLPFMGTVASEDFFSGTAAGLAGGTTSIIDFVIPNPQQSLMEAFHQWRGWGQKSASDYGFHVAITWWSEQVREEMAELVSHHGINSFKHFMAYKNAIMAADDTLVASFERCLELGAVPTVHAENGELVYHLQRRLMAQGITGPEAHPLSRPSQVEGEAASRAIRIAETIGTPLYLVHVSTKEALDEITYARSKGQPVYGEVLAGHLLLDDSVYQHPDWQTAAGYVMSPPFRPRGHQEALWHGLQNGNLHTTATDHCCFCAEQKAAGRDDFSKIPNGTAGIEDRMAVLWDEGVNSGRLSMQDFVALTSTNTAKIFNLYPRKGAIRVGADADLVLWDPQGTRTISAKTHHQQVDFNIFEGKTVRGVPSHTVSQGRLVWADGDLRAERGAGRYIERPAYPAVFDLLSKRAELHKPIAVKR
>LR134318.1|VEF10524.1|2359907_2361392_+|transporter-membrane-protein
MQQNRSQVTERDGLFELEAGSDVLDSPRYNHDMAPTKVRERTWNKWHITALWVGMSICVPTYTLGGVLTAYFGLSVGEALLAILFANLIVLIPLTLNAFPGTKYGIPFPVLLRSSFGILGSNVPCLIRALVACGWFGIQTMFGGLAIHLFLGSVFEGWKSLGGTGEVIGFMVFWALNLWVVIRGAESIKWLETLSAPLLVAVGIGLLVWAMPNVSMSELLAIPPKRPEGASVVSYFAAGLTAMVGFWATLSLNIPDFSRYAKSQKDQILGQIIGLPLTMFLFASLGVIMTAASVKLVGVTVSDPVTLIGHIQNPVWVAVAMALIIIATLSTNTAANIVSPTNDFQNIAPKVINRTKAVLLTGLVGLLLMGHELLKKLGLIVSDVSLETVYSNWLLGYSSLLGPIAGIMVVDYFLIKKQRLDLAGLYRDDVYPAWNRAGFLAFGVPVVLTLLSLGSDAFSWFYSYGWFTGSALGGVIYYGLCVMRAQPSVVKTAV
>LR134318.1|VEF10525.1|2361551_2362835_+|allantoate-amidohydrolase
MNAPVDVLQSTHQHINRDRLWASLMDLAKLGATVKGGVCRLALTDLDRQARDLFVQWCEDAGCSVTVDAVGNIFARRAGRNPELPPVMTGSHIDTQPTGGKFDGCFGVLAGVEVLRTLNDLGVETEAPLEVVVWTNEEGSRFAPCMMGSGVFAEKFSLEETLAKVDADGVTVGEALNAIGYAGPRKVSGHQVGAYFEAHIEQGPILEDEHKTIGVVLGALGQKWFDLKLRGVEAHAGPTPMHLRKDALVGASVIVGAVNRAALGHQPHACGTVGCLQAYPGSRNVIPGEVRMTLDFRHLEPARLDAMIAEVKQVIEATCEEHGLTYELTPTADFPPLYFEKGCVEAVRGAAKGLGLSHMDIVSGAGHDAIFLAELGPAGMIFVPCEGGISHNEIENAAPDDLAAGCAVLLRAMLAASAMVAAGKAAA
>LR134318.1|VEF10526.1|2363588_2364977_-|amidohydrolase
MTQLQNILIKHPVAVMTGQRGSRARAGAVDIRVVNGRIAEMAADLQAQPGERVIDARNCVVYPGWINTHHHLFQNLLKAVPEGLNQDLQGWLASVPYPRLNRFTPQLARIAARLGMVELLLSGVTTCADHHYLYHAHGSTETGDLLFDMADEFGLRFVLCRGGALESASAHPGFSKTALQPESLEQMVGDIERLKSRYHQDTPDAMRRVVVAPTTPTFSLPPTLLRELAHTARGLGLRLHTHLSETQNYVNFCREKYNCSPVEFVAEHEWLGPDVWFAHAVHLQPAEIRMLAQTGTGIAHCPVSNARLGSGVAPVPQMYEAGVAVSLGVDGVASNESGSMVGEANTAWLIHRAEQGASATTAEDVIHWGTAGGAQVLGLGAVGTLEVGQAADLVVYSLDHPRFYGFHDSAVAPVVAGEPITVKYSLVGGRIVVDNGVIPGLDIEQMRAEAWEGVQQLMNVDN
>LR134318.1|VEF10527.1|2364990_2366358_-|xanthine/uracil-permease
MSSATSASKSATTVHAVDRVLPVRQMLTLGLQHMAVSYIGAIAVPLIVASALKMSHADTVVLISTTLFCSGIATLLQTVGFWKFGVRLPILQGVAFSSVGPVIAIGSNPEVGFAGVCGAVIGAGIFTMLMAPFVGRLRRFFPPVVTGCIVTVIGLQLFPIAYEWVGGGRNASNFGAPAFLGVAVVVLLTILLVTRYGSPLMRNMAVLVGMLVGAGLAYGLGMGSFHSVEQAPWLTVPYPFYFGLPTFSLIPIATMVVVMIVQMVESMGLFVAIGDIVEKPVEDKQVINGLRANGLASTIAGMFAAFPFIAFMENVGLVILTGVRSRWVVAVSGLLMCSIALVPKAGAIIASMPTAALGGAGVAMFGVVAAAGIQTLAKVDYERNRYNVLIVGFTIAAALVPVLAPTLFKQLPEWSQPFLHSSVVIACLVSVLLNAALNGVSVPQTTASKSASHIL
>LR134318.1|VEF10528.1|2366607_2367651_-|cobalamin-synthesis-protein/P47K
MNTPFNAPTRNTKIPVTILTGFLGAGKTTLLNYILKENHGRKIAVIENEFGEVGIDGDLVLSSETEEIYEMVNGCVCCTAEVREDLVRIVRELVARPVRLDHILIETSGLADPYPVAQSFFINDPIAEEVELDAIVTMVDAKHIAQHLEDLQLDGVDNQAVDQIVCADRIVINKVDLVSAAEVEALCGKIRSLNATADLVTSTHAQIDLTRILGIGAFECTQKLMEIGAEQHDHDHHEHHAQEPDHQHDPSVSSVGIAVDGAVNLMAFHRWISELRSSQADNLYRMKGVLAVANEDQRYVLQGVHSLVEFRASTAWGTEPRSSKIVFIGRDLDRAALNQGFAACLAG
>LR134318.1|VEF10529.1|2367770_2368355_-|phenylacrylic-acid-decarboxylase
MNRPRMVVGISGASGFVYGVRLLQLLAELDIESHLIISRAALLTMAHETDYKLADVTALASHYHRADDVAAGIASGSFRCLGMVVAPCSMRTLAEIATGTSSGLIGRAADVTLKERRTLVLMARETPLTLAHLRNMTAITEMGGIIAPPVPAFYARPQNLAQMVDHSLGRVLDLFGLDAGVATRWREHPNPCGS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR134318_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134318_4

3578144-3578291

Orphan

Consensus_repeat	Method
CTCGGTATCGCATGTCGGTGCAATTCGCCGAAACACCGCAATCAGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LR134318_4

>merge|LR134318|4|3578144-3578291|CRISPRCasFinder
CTCGGTATCGCATGTCGGTGCAATTCGCCGAAACACCGCAATCAGTCCCCTCTCCCTCCGGGAGAGGGCTAGGGTGAGGGGCTGTTCAAAATCTGGGTTCAACTCGGTATCGCACGTCGGTGCAATTCGCCGAAACACCGCAATCAGT

>LR134318|4|4|3578144-3578291|CRISPRCasFinder
CTCGGTATCGCATGTCGGTGCAATTCGCCGAAACACCGCAATCAGT	CCCCTCTCCCTCCGGGAGAGGGCTAGGGTGAGGGGCTGTTCAAAATCTGGGTTCAA
CTCGGTATCGCACGTCGGTGCAATTCGCCGAAACACCGCAATCAGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134318.1\|VEF11588.1\|3574278_3574749_-\|ribonuclease-H	unknown	unknown	gnl\|CDD\|178927
LR134318.1\|VEF11594.1\|3581545_3583387_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|173862
LR134318.1\|VEF11585.1\|3570231_3570846_-\|GCN5-like-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134318.1\|VEF11598.1\|3587117_3587912_+\|putative-oxidoreductase	unknown	unknown	gnl\|CDD\|223696
LR134318.1\|VEF11587.1\|3573306_3574065_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
LR134318.1\|VEF11590.1\|3575667_3576435_+\|beta-lactamase-like-protein	unknown	unknown	gnl\|CDD\|274569
LR134318.1\|VEF11591.1\|3576534_3577998_+\|lytic-transglycosylase-catalytic-subunit	unknown	unknown	gnl\|CDD\|182727
LR134318.1\|VEF11595.1\|3583391_3584465_+\|putative-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226642
LR134318.1\|VEF11582.1\|3568315_3568873_-\|NADPH-dependent-FMN-reductase	unknown	unknown	gnl\|CDD\|223508
LR134318.1\|VEF11599.1\|3588066_3589032_-\|GAF-sensor-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
LR134318.1\|VEF11597.1\|3585487_3587098_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
LR134318.1\|VEF11601.1\|3590897_3591728_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
LR134318.1\|VEF11589.1\|3574842_3575601_-\|sam-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
LR134318.1\|VEF11586.1\|3570860_3573116_-\|Orn/Lys/Arg-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|185297
LR134318.1\|VEF11596.1\|3584466_3585486_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
LR134318.1\|VEF11592.1\|3578402_3579548_+\|putative-transposase/integrase	unknown	unknown	gnl\|CDD\|366234
LR134318.1\|VEF11600.1\|3589213_3590419_-\|RTX-toxins-related-Ca2+-binding-protein	unknown	unknown	gnl\|CDD\|274229
LR134318.1\|VEF11583.1\|3569056_3569287_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF11584.1\|3569372_3570266_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
LR134318.1\|VEF11593.1\|3579716_3581549_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|173862

Protein	Function_ID	Function_description	E-value
LR134318.1\|VEF11588.1\|3574278_3574749_-\|ribonuclease-H	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	1.46983e-99
LR134318.1\|VEF11594.1\|3581545_3583387_+\|extracellular-solute-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
LR134318.1\|VEF11585.1\|3570231_3570846_-\|GCN5-like-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.56807e-20
LR134318.1\|VEF11598.1\|3587117_3587912_+\|putative-oxidoreductase	gnl\|CDD\|223696	COG0623, FabI, Enoyl-[acyl-carrier-protein].	3.07845e-149
LR134318.1\|VEF11587.1\|3573306_3574065_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	2.43264e-151
LR134318.1\|VEF11590.1\|3575667_3576435_+\|beta-lactamase-like-protein	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	7.35071e-143
LR134318.1\|VEF11591.1\|3576534_3577998_+\|lytic-transglycosylase-catalytic-subunit	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	2.55402e-125
LR134318.1\|VEF11595.1\|3583391_3584465_+\|putative-ABC-transporter-permease	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
LR134318.1\|VEF11582.1\|3568315_3568873_-\|NADPH-dependent-FMN-reductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	2.92339e-43
LR134318.1\|VEF11599.1\|3588066_3589032_-\|GAF-sensor-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.39818e-44
LR134318.1\|VEF11597.1\|3585487_3587098_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
LR134318.1\|VEF11601.1\|3590897_3591728_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.67144e-43
LR134318.1\|VEF11589.1\|3574842_3575601_-\|sam-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.61562e-06
LR134318.1\|VEF11586.1\|3570860_3573116_-\|Orn/Lys/Arg-decarboxylase-family-protein	gnl\|CDD\|185297	PRK15399, PRK15399, lysine decarboxylase.	0
LR134318.1\|VEF11596.1\|3584466_3585486_+\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
LR134318.1\|VEF11592.1\|3578402_3579548_+\|putative-transposase/integrase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	4.75106e-19
LR134318.1\|VEF11600.1\|3589213_3590419_-\|RTX-toxins-related-Ca2+-binding-protein	gnl\|CDD\|274229	TIGR02608, hypothetical_protein, delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.	0.000950549
LR134318.1\|VEF11584.1\|3569372_3570266_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.55403e-33
LR134318.1\|VEF11593.1\|3579716_3581549_+\|extracellular-solute-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0

>LR134318.1|VEF11591.1|3576534_3577998_+|lytic-transglycosylase-catalytic-subunit
MSSSIRKSVNSDAFTRLAQAIAVAVSATLAGCSSHAPQTEATHTPNIAARAKQKPIWLTEKPTPVAPQDIWERMRQGFQLQEGLGVNPRIEQQRLWFASNPSFLENAGERGSLYIHYIVERLEERNMPLELALLPVIESAYNPMAYSRADAVGLWQFIPSTGRYFNLRQTRFYDGRRDITASTTAAMDYLTRLHDMFNGDWLLALAAYNAGEGTVSRAIERNEKLGLPTDYWNLPLPAETQAYVPKLLALSQVVLAPEAYGVNLNPIANEPYFQVVEINQRMDLSKVAAVANIDEDELFQLNPAFKQRTTIDGPQHLLVPTSKAQLLTASLQTMRPDELISPRSLKPVFEGADPSEVAQLKRAYRVKRGDNLGSIAKANKVEVKDLQRWNKLTGKNLKVGQTLVMQDNTKRAPARKSGRVNTVIAANSKTKGKDDSQQQTQYKVKRGDTLYVVAKRFNVQMQHLKRWNPGAGKALKPGQMLTVYQPH
>LR134318.1|VEF11590.1|3575667_3576435_+|beta-lactamase-like-protein
MIQITALPAFTDNYIWLLQDHRTQRCAVVDPGDASPVLAWLEAHPGWVLSDILITHHHHDHVGGVERLKAASGATVYGPASESIPARDVALKDNDSVSVLGWDFAVYAVPGHTLGHIAYYHHGLLFCGDTLFAAGCGRLFEGTPEQMHQSLSRLSTLPEDTLVYCTHEYTLSNLKFAAAVEPGNPDIAARLEKVTQQRQNSVMTLPSTLALEKLTNPFLRTTETLVTQKVDERAGAQNRAPSEVFAVLRAWKDTF
>LR134318.1|VEF11589.1|3574842_3575601_-|sam-dependent-methyltransferase
MTDKAFAQADPDWLALISAAREWLSGPLGQFLLNEERRMLDDELGRFFGGYLVHYGPSAETPPSAPQVQRNVRLGAPLPGVEIVCEEQAWPLSEHAADVVVMQHGLDFCLSPHGLLREAASSVRPGGHLLIVGINPWSTWGLRHAFANDAMRQARCISPSRVADWLNLLGFALEKRRFGCYRPPLASPKWQARLAGWERKAGDWQLSGGGFYLLVARKIVVGLRPLRQERREPMGKLIPLPMAKVNRRRIEP
>LR134318.1|VEF11588.1|3574278_3574749_-|ribonuclease-H
MSENVESVDTVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRMELLGAIRGLEALKRPCEVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNADLWQELDEQVNRHKVTWKWVRGHIGHHGNERADQLANRGVDEVRGYKQS
>LR134318.1|VEF11587.1|3573306_3574065_-|DNA-polymerase-III-subunit-epsilon
MATRSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITNEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCSILDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLAGNASDGNGTGEGADNSATEIRRLPADRRPAPIIRATEEELAAHLVRLEIIAKSAGAPAMWTQIAEADAQA
>LR134318.1|VEF11586.1|3570860_3573116_-|Orn/Lys/Arg-decarboxylase-family-protein
MYKDLKFPVLIVHRDVKADTVAGDRIRGIARELEQEGFSIVSATDYAEGRLVASTHHGLACMLIAAEDASTHSHLLQNMAELIGLARVRAPDLPIFALGEQVTLENAPADAMAELNQLRGILYLFEDTVPFLARQVARAARKYLDGLLPPFFKALVQHTADSNYSWHTPGHGGGVAYHKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHTFFVINGTSTANKIVWHSMVGRDDLVLVDRNCHKSVLHAIIMTGAIPLYLCPERNELGIIGPIPLSEFSREAIQAKINASPLTQGREPKVKLAVVTNSTYDGLCYNAELIKQSLGNSVEVLHFDEAWYAYAAFHEFFAGRYGMATARSEDSPLVFTTHSTHKMLAAFSQASMIHVQDGGARQLDRDRFNEAFMMHISTSPQYSIIASLDVASAMMEGPAGRSLLQETFDEALSFRRALANLRQHIAADDWWFSIWQPPGVEGIDRVHSEDWLLQPDADWHGFAEVSDDYVLLDPIKVTLVMPGLNAGGALSENGIPAAVVSKFLWERGLVVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRSYDANVRLDTCLPCVAQQDTARYRGMGLRDLCDQLHACYRSNATAKHLKRMYTVLPQIAMKPAHAYDNLVRGEVEAVPIDELEGRIAAVMLVPYPPGIPLIIPGERFTEATRSIIDYLKFARTFDSSFPGFVADVHGLQHEDEGNGRHYTVDCVKE
>LR134318.1|VEF11585.1|3570231_3570846_-|GCN5-like-N-acetyltransferase
MQPVMNPKYPGLSVRVADEGFAPYIWGSDFSFEVSAYGAAVIGTPVDQWQITPIVPYRKCYGIDPEEFSAFHDAPDSAIFMAYLDDEPVGHLVISTNWNGFAHIDELAVHAPARRHGVAKALLDVAQFWSRKKKLPGIMLETQNNNLGACRLYERCGYVIGGVDQLRYRGIDPHTAEMALFWYRLFDNPLENPLSSTTSPRLVP
>LR134318.1|VEF11584.1|3569372_3570266_+|LysR-family-transcriptional-regulator
MRLRHIEVIQALLQTGHLGTAAEWLQLPVTEVEERLREAESQLGFMLFASVRGRLQSTPEARALQVEIAHVYEALEPVQRLASSLKQYLAPPLRIIGTPPLAQQLLPQSLAALRRRLPDAPCSLLSAPTRDIVRSLLLRESDLGLSLHDPEHADIDCRPLAQGKLQLLAPHGWLQPKQKYLSVQDLAGQAMIGLEGHDPLSPALDNKLQALRPAPSIQTRVQTHQMMRSMVEAGEGLAIVDPFTALGARAGGLDVCPLSPAVPISVYALTFKHAAPSSAIQALLAIITEQAEAMLSS
>LR134318.1|VEF11583.1|3569056_3569287_+|Uncharacterised-protein
MAAVLVGQFHARDAEGRVYSVHEFQESNPSADGSIGSEPIYRLAIGDRIKKINDQTFELVQSGITLTREPEPIAAS
>LR134318.1|VEF11582.1|3568315_3568873_-|NADPH-dependent-FMN-reductase
MSNVYNVAVVVGSLRKASINRKMALALAELAPANLKLEIVEIGDLPLYNEDIDGDSPPAAYSTFRQKVASSDAVLFVTPEYNRSIPAPLKNAIDVGSRPYGKSAWSGKPGAVISVSPGAIGGFGANQHLRQTFVFLDIHCLQQPEAYLGGAGNAFDDAGKLSDSVKPFLQKFIDAYGLFVEQHKK
>LR134318.1|VEF11592.1|3578402_3579548_+|putative-transposase/integrase
MPWKQESPMDQRVKLISDWLSGSYTKSQLSRRYGVSRPTIDKWLDRYAALGVDGLKEQSRKPLNCPHQTSDEIIAKLFAKKNEHPDRGPKQIIDRLRVSDPHIQWPAASTAGEWLKKAGLVMARRPYPPRPRAPTHLRPVDAPNQTWCADYKGQFKMQDGNWCYPLTITDQMSRFLFVCRALPSTHGAPTREGFEWAFREYGLPDVIRTDNGAPFASTGLARLSKLSVWFIRLGIHVETITPGRPDQNGRHERMHRTLKAAVPPAENLVRQQLAFQDFIQDFNHHRPHTALGMKPPASVYSPSERAYPGHLPALEYGSDVEVRKVRSNGEIKWKGQLIFLGEALIGEDIALKEVADDAWELYLCSHCLGRLEHGAKRVASL
>LR134318.1|VEF11593.1|3579716_3581549_+|extracellular-solute-binding-protein
MKRALLLLLISLALSSTASATITESHGYAQFGTLKYPARFTHFDWVNPQAPKGGTLRVMAFGTFDTVNPYTFKGTSPVTTANFLQYGINELNEPLMVGTGQYSPSGDEPASSYGLIAQSVEYSEDRSWVVFNLRPEARFHDGTPITAYDVAFSYRLLLKEGHPLYRTALQEVLRVDILNKQRIRFVLKRSGNPLLILRLGELPVLPQHYWKDRDFKATTFEPPLGSGPYRITSVTPGRQLIFERVKDYWGRDLPVNRGKYNFDRMEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWVNGYNFPAVRRGEVIKAQIPHHIPTQSQGLFMNTRRATFADVKTREALGLMFDFEWTNRALFSNAYKRTTSYYPNSEFSASGLPVGHEWLMLKPYKDQLPARLFTEPFTLPQTDGRGIPRETMRKALALLAEAGWKLHGQRLQNASGQPLRFELLLVNPSLERLYQPYIENLNSIGIDARLRTVDRAQYKQRLDQFDFDMISMTLGQTLSPGLEQWQYFHSSQVNVKGSKNYAGIANPVVDHLLEQLLAARTRDEQVAAGKALDRVLLWQHYSIPNWYLNYHRLAYRNRLAFVTTPPYTLGLSAWWLKSSEKDQ
>LR134318.1|VEF11594.1|3581545_3583387_+|extracellular-solute-binding-protein
MKPIRALLVQASGLLFAGLACAAPQHAVTLYNEPPKYPADFKHFDYVNPDAPKGGVFRQAGFGGFDSLNPFISKGVPADDIGQIYDTLTKHSLDEPFTEYGLIASKIEKADDNSWVRFYLRPQARFHDGHPVRADDVVFSFDTLTKEGSPMFRGYYSDVAEVIAEDPLKVLFKFKHSNNRELPLILGQLPVLPKHWWAERDFAKGNLEIPLGSGPYKVAEVKAGRSVRYERVKDYWGKDLPVNRGFYNFDTMTTDYYRDNTVALEALKAGQFDYWLEMTAKNWANAYNIPAVTEGRLIKEQIANSNPTGMQGFVYNLRRPVFQDVRVRQALALLLDFEWTNKQLFNGAYSRTRSYFENSEMAATGLPDAEQRAILEPFRSKLPAQVFSEAYENPKTDASGMIRAQQREAYQLLQEAGWKIVDDKMVDATGKPVVIEFLLAQTEFERVLLPFKRNLSDLGIDLVIRRVDVSQYINRVRSRDFDMMVGSFPQSNSPGNEQREFWMSAAADKSSSRNSMGLKDPVVDQLVESLINADSRKSLVAHARALDRVLQWGYYVIPNWHIKTWRVAYWNHIGHPKVSPKYDIGINTWWVKPDAKPAVEVETQLQADPAGTE
>LR134318.1|VEF11595.1|3583391_3584465_+|putative-ABC-transporter-permease
MLAYIFRRLLLIIPTLFGILLINFVIIQAAPGGPVEQMIAKLEGFEGATSRIAGGGAEVAVAGSSYRGAQGLDPALIKEIEHMYGFDKSAPERLWIMVKNYAKLDFGDSFFRDAKVIDLIKEKMPVSISLGLWSTLIMYLVSIPLGIAKATRHGSHFDVWTSSAIIVGYAIPAFLFAILLIVVFAGGSYLDWFPLRGLTSNNFDELSFGGKILDYFWHLALPVTALVIGNFATMTLLTKNSFLDEINKQYVVTAKAKGLTRHRVLYGHVFRNAMLLVIAGFPSAFIGIFFTGSLLVEVIFSLDGLGLMSFEAAINRDYPVVFGTLFIFTLLGLVVKLIGDLTYTFVDPRIDFASREH
>LR134318.1|VEF11596.1|3584466_3585486_+|ABC-transporter-permease
MNLSPLNRRRFELFKANKRGWWSLWLFLILFGLSLGAELIANDKPLVVHYDNNWYFPAIKRYPETTFGGEFPLEANYKSPYIRELLKAKDAWVLWAPIPYSYQSINYDLKVPAPAPPSADNLLGTDDQGRDVLARVIYGFRISVLFALTLTVLSSIIGVIAGALQGFYGGWVDLAGQRFLEIWSGLPVLYLLIILASFVQPNFWWLLGIMLLFSWMSLVDVVRAEFLRGRNLEYVRAARALGMQNGAIMFRHILPNAMVSTMTFMPFILTGAIGTLTALDFLGFGLPAGSPSLGELVAQGKSNLQAPWLGMSAFAVLALMLSLLVFIGESARDAFDPRK
>LR134318.1|VEF11597.1|3585487_3587098_+|ABC-transporter-ATP-binding-protein
MNQDNLIEVRDLAVEFGFGERVHRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPMARHPAGSINYAGQNLLGLSEKTLRHIRGNRIAMIFQEPMTSLNPLHSIEKQINEVLGIHKGLSGKVATKRTLELLEMVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILDLLKELQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQASCAELFRSPQHPYTRELLGAEPSGGPVSNEIGAPLLEVENLKVWFPIKKGLLKRTVDYVKAVDGINFSLPQGQTLGIVGESGSGKSTLGLAILRLIGSKGAIRFEGKQLDCLTQSEVRPLRREMQVVFQDPFGSLSPRMCVNDIVGEGLRIHKMGTATEQEAAIIAALKEVGLDPETRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQAKYNLTYLFISHDLAVVKALSHQLMVVKHGQVVEQGDAQSIFAAPQHPYTQQLLEAAFLAPATAQ
>LR134318.1|VEF11598.1|3587117_3587912_+|putative-oxidoreductase
MGFLAGKRVLIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLKGRVEEFAQGWGSSPELCFPCDVASDEEIAKVFEELSKKWDGLDCIVHSVGFAPGDQLDGDFTEATTREGFRIAHDISAYSFVALAKAGREMMKGRNGSLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGPDGTRVNCVSAGPIRTLAASGIKNFRKMLAANEAQTPLRRNVTIDEVGNAGAFLCSDLASGISGEIMYVDGGFNTTAMGNIEE
>LR134318.1|VEF11599.1|3588066_3589032_-|GAF-sensor-containing-diguanylate-cyclase
MLVPGKPANEAARVQALHGLNLLDSAPEERFDRLTRLAKRLFNVPIALVTLVDKDRQWFKSCVGLDATETSRDVSFCGHAILNDDLLLVRDAREDVRFHDNPLVTGAPNIRFYAGYPLTVPHGNKMGTLCLIDTKPRELDDEERALLRDLAQMAEQELTAVQMASMDELTLLSNRRGFKQLAQHALDACTRLGRPATLLFFDLNDFKQINDLYGHAEGDSALKTFADVLRIAFRESDVVGRLGGDEFVALLTGSSHVETTAIVARLKEILEERNATLHRGYAIRFSVGQIEYNAKRHESVDSLLADADGAMYAHKQALKGS
>LR134318.1|VEF11600.1|3589213_3590419_-|RTX-toxins-related-Ca2+-binding-protein
MTNHNDSILVNAPGFLDPTFGLEGIVYVPGPGRISGIVEDADGAMIYCVWADKDIWLYRSFADGTPDLEFGEGGRTRWSFALGVSSMPVELLLQEDGKIVLIGATQALDDIFKLQLAVTRFNQNGSPDLIFGNKIFLPPEQAVSVSNLPYGCLQKDGKILLGVSYADKDSVRSGRIYRLHSNGANDLEFGAERGWIDVQFNGSSTMVECVGVTKNDEILIGATSDSRQQLVGRFTSPGIIDPSFGINGWWVAEGVNILGNFVLHGEQIVVVGAEIDEGTYQACISRLTADGEFDPQFNKGKRLLVSVPVDTAQYPVTMEYVALQSDGKIVAAGHAGYVNQSFWLRVQNDGVLDPLFGDQGLHVHTPSSFHGGLLVQRNGQRIIAALDPASAVDSHILGIQS
>LR134318.1|VEF11601.1|3590897_3591728_+|alpha/beta-hydrolase
MGFVTTQDGVEIFYKDWGPKDAPVIHFHHGWPLSSDDWDAQMLFFLSEGFRVIAHDRRGHGRSSQVWDGHDMDHYADDVLAVVKHLGVKNVVHVGHSTGGGEVIHYIARHGQDNVAKGVLISAVPPLMVQTESNPGGLPKSVFDDFQAQLAANRAQFYRDIPTGPFYGYNRPGASPSEGIIANWWRQGMMGGAKAHYDGIVAFSQTDFTEDLKKVTVPVLVMHGEDDQIVPYANSGPMSAKLLPNGTLKSYPGFPHGMPTTEAATINADLLAFILG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR134318_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134318_5

4631107-4631201

Orphan

Consensus_repeat	Method
CCAGCTCCCACAGGTTTCGAGTTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134318_5

>merge|LR134318|5|4631107-4631201|CRISPRCasFinder
CCAGCTCCCACAGGTTTCGAGTTGTGCACAACATTTGTGAACGACACAAAGCCTTGTGGGAGCTGGCTTGCCAGCTCCCACAGGTTTCGAGTAGT

>LR134318|5|5|4631107-4631201|CRISPRCasFinder
CCAGCTCCCACAGGTTTCGAGTTGT	GCACAACATTTGTGAACGACACAAAGCCTTGTGGGAGCTGGCTTG
CCAGCTCCCACAGGTTTCGAGTAGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134318.1\|VEF12547.1\|4637950_4639438_-\|ATPase	unknown	unknown	gnl\|CDD\|283518
LR134318.1\|VEF12545.1\|4634362_4637098_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|183859
LR134318.1\|VEF12539.1\|4627490_4628408_+\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|235572
LR134318.1\|VEF12546.1\|4637405_4637861_+\|Zn-ribbon-containing,-possibly-RNA-binding-protein-and-truncated-derivatives	unknown	unknown	gnl\|CDD\|377496
LR134318.1\|VEF12533.1\|4622198_4622801_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
LR134318.1\|VEF12543.1\|4632212_4632845_-\|glutathione-S-transferase-like-protein	unknown	unknown	gnl\|CDD\|198303
LR134318.1\|VEF12544.1\|4633024_4634242_-\|bifunctional-amino-acid-N-acetyltransferase	unknown	unknown	gnl\|CDD\|235441
LR134318.1\|VEF12538.1\|4626864_4627350_-\|nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|180061
LR134318.1\|VEF12535.1\|4623085_4623511_-\|histidine-triad-(HIT)-protein	unknown	unknown	gnl\|CDD\|334445
LR134318.1\|VEF12537.1\|4625868_4626711_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|182386
LR134318.1\|VEF12548.1\|4639624_4641514_+\|Cache-sensor-containing-chemotaxis-sensory-transducer	unknown	unknown	gnl\|CDD\|223910
LR134318.1\|VEF12549.1\|4641785_4642898_+\|group-1-glycosyl-transferase	unknown	unknown	gnl\|CDD\|340842
LR134318.1\|VEF12551.1\|4643657_4644653_+\|membrane-protein	unknown	unknown	gnl\|CDD\|377103
LR134318.1\|VEF12540.1\|4628453_4630490_+\|histidine-kinase,-Classic	unknown	unknown	gnl\|CDD\|236901
LR134318.1\|VEF12541.1\|4630493_4631078_+\|ATP:cob(I)alamin-adenosyltransferase	unknown	unknown	gnl\|CDD\|376665
LR134318.1\|VEF12550.1\|4642890_4643661_+\|deacetylase	unknown	unknown	gnl\|CDD\|200603
LR134318.1\|VEF12542.1\|4631268_4632216_-\|protein-MutT	unknown	unknown	gnl\|CDD\|236361
LR134318.1\|VEF12536.1\|4624399_4625749_+\|outer-membrane-porin	unknown	unknown	gnl\|CDD\|335381
LR134318.1\|VEF12532.1\|4621413_4621884_-\|DNA-binding-stress-protein,-Dps-family	unknown	unknown	gnl\|CDD\|223854
LR134318.1\|VEF12534.1\|4622875_4623082_-\|protein-SlyX	unknown	unknown	gnl\|CDD\|166895

Protein	Function_ID	Function_description	E-value
LR134318.1\|VEF12547.1\|4637950_4639438_-\|ATPase	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
LR134318.1\|VEF12545.1\|4634362_4637098_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|183859	PRK13103, secA, preprotein translocase subunit SecA; Reviewed.	0
LR134318.1\|VEF12539.1\|4627490_4628408_+\|2-dehydropantoate-2-reductase	gnl\|CDD\|235572	PRK05708, PRK05708, putative 2-dehydropantoate 2-reductase.	0
LR134318.1\|VEF12546.1\|4637405_4637861_+\|Zn-ribbon-containing,-possibly-RNA-binding-protein-and-truncated-derivatives	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	1.30897e-10
LR134318.1\|VEF12533.1\|4622198_4622801_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	3.71485e-31
LR134318.1\|VEF12543.1\|4632212_4632845_-\|glutathione-S-transferase-like-protein	gnl\|CDD\|198303	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	4.39994e-52
LR134318.1\|VEF12544.1\|4633024_4634242_-\|bifunctional-amino-acid-N-acetyltransferase	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	0
LR134318.1\|VEF12538.1\|4626864_4627350_-\|nucleotide-binding-protein	gnl\|CDD\|180061	PRK05412, PRK05412, putative nucleotide-binding protein; Reviewed.	1.79353e-82
LR134318.1\|VEF12535.1\|4623085_4623511_-\|histidine-triad-(HIT)-protein	gnl\|CDD\|334445	pfam01230, HIT, HIT domain.	3.10251e-23
LR134318.1\|VEF12537.1\|4625868_4626711_-\|mechanosensitive-ion-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	1.00445e-55
LR134318.1\|VEF12548.1\|4639624_4641514_+\|Cache-sensor-containing-chemotaxis-sensory-transducer	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.50389e-73
LR134318.1\|VEF12549.1\|4641785_4642898_+\|group-1-glycosyl-transferase	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	9.10053e-100
LR134318.1\|VEF12551.1\|4643657_4644653_+\|membrane-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	1.82154e-27
LR134318.1\|VEF12540.1\|4628453_4630490_+\|histidine-kinase,-Classic	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.21969e-55
LR134318.1\|VEF12541.1\|4630493_4631078_+\|ATP:cob(I)alamin-adenosyltransferase	gnl\|CDD\|376665	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase. Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.	1.19449e-72
LR134318.1\|VEF12550.1\|4642890_4643661_+\|deacetylase	gnl\|CDD\|200603	cd11374, CE4_u10, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily. The family corresponds to a group of uncharacterized bacterial proteins with high sequence similarity to the catalytic domain of the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups of cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily.	3.39368e-64
LR134318.1\|VEF12542.1\|4631268_4632216_-\|protein-MutT	gnl\|CDD\|236361	PRK08999, PRK08999, Nudix family hydrolase.	5.5877e-180
LR134318.1\|VEF12536.1\|4624399_4625749_+\|outer-membrane-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	6.17074e-176
LR134318.1\|VEF12532.1\|4621413_4621884_-\|DNA-binding-stress-protein,-Dps-family	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.94491e-73
LR134318.1\|VEF12534.1\|4622875_4623082_-\|protein-SlyX	gnl\|CDD\|166895	PRK00295, PRK00295, hypothetical protein; Provisional.	4.30443e-34

>LR134318.1|VEF12541.1|4630493_4631078_+|ATP:cob(I)alamin-adenosyltransferase
MGFRLSKIYTRTGDKGETGLGDGRRVPKDHPRIEAIGEVDTLNSQVGVLLAGLLAERDKYPGLNELIDVLAPCQHRLFDLGGELAMPEYQALNTAEIERLEAAIDVWNEELGPLENFILPGGSMLIAQAHVCRSLARSAERRCQHLNAVEPLAGVGLAYINRLSDLLFVAARLIARRQGVAEILWQPARRPTEM
>LR134318.1|VEF12540.1|4628453_4630490_+|histidine-kinase,-Classic
MPLRQRLENLPVGQKLLAALLVLLTTVLLVANLTFISAAYYISQESMAPQALQTIGRLIANPSLVSDALSSPQSAERLLKELDSYSPLRAAALYDGKGERLAQVQRGDKLKLPERYRHIEAWQLTEFRSNQLITLPRPGTAPGHLLLVASSELPMAFYTGTLTASLGILIFSVLLWLVIARQIKRLITRPIHELEELSRQVTREENYALRASRGNHDEIGSLAEAFNTMLSRIEAREQQLKRARDDSQAAYDQAQGLAEETRHTNRKLELEVQVRSKIEKKLTGFQNYLNSIIDSMPSALIALDEQLYVTQWNQEASALSGTRLDEALNQPIFLAFEPLKPFLPQLKQTVEQHTVTKVERVTWFKDEEPKHYALTFYPLMGGAGRGVVIRIDDITQRLSLEEMMVQSEKMLSVGGLAAGMAHEINNPLGAILHNVQNIRRRLSADLPKNLETAEQLGIELETVNRYLHGREVPQLLDGIQQAGARAAKIVTHMLSFSRRSTRQMAPCDLPALIDQAVEIAGNDFDLAIGFDFKGQAIIRQFDPALGPVPGTANELEQVLLNLLKNAAQAIHQREDDSEPGRIILRTRLNPPWAEIQVEDNGIGMSENVRKRTFEPFFTTKEIGQGTGLGLSVSYFIITNNHKGQMEVQSAPGQGTCFTLRLPLVAPTTIAAETSQLPR
>LR134318.1|VEF12539.1|4627490_4628408_+|2-dehydropantoate-2-reductase
MATTWHILGAGSLGTLWATRLARAGVPVRLILRDTSRLRSYAAAGGLTLVENGQAHTYAVPGETPDNPEPIRRLLVACKAYDAETAVARLASRLAPDAELILLQNGLGSQDAVAARVPQARCISASSTEGAFRDGDWRVVFAGHGFNWLGDAANPLAPIWLEDLQAAKIPHEWTTDILTRLWRKLALNCAINPLTVLHDCRNGGLQEHHCEVATLCSELAELLQRCGQPAAADNLQQEVERVIQATAANYSSMHQDVANQRRSEISYLLGYACKVAARHQLNLPHLKQLQQRLVAHLHSRGLPSD
>LR134318.1|VEF12538.1|4626864_4627350_-|nucleotide-binding-protein
MPSFDVVSELDKHELTNAVENAVKELDRRYDLKGKGSFEFKEKDLTVSLTAEAGFQLEAMIEILKLALVKRKIDVQCLEVKDAYASGKLMKQDAILKEGIDKELAKKIVGHIKDAKLKVQAAIQGEQVRVTGKKRDDLQEAIAALRAKEFGMPLQFNNFRD
>LR134318.1|VEF12537.1|4625868_4626711_-|mechanosensitive-ion-channel
MDLNAEVDHLVKASQAWIPMIMEYGSRVLLAVITLAIGWWLINKVTHKLGGLLALRNADLALQGFISSLANIILKVLLIVSVASMIGVETTSFVAAIGAAGLAIGLALQGSLANFAGGVLILLFRPFRIGDWIEAQGVAGTVDSIQIFHTVLRTGDNKTIIMPNGNLSNGIITNTNRQPTRKVVFDVGVDYEADLQRARQVLLDLAKDARVMQDPEPQAVISTLGDSSITVSLRVWVKTADYWDVMFMFNEQARDRLKAAGIDIPFPQRVIRVVQESAAQ
>LR134318.1|VEF12536.1|4624399_4625749_+|outer-membrane-porin
MRVMKWSMIALAVAAAASSQLATAAPFVSDQAEAKGFVEDAKLDLLVRNYYFNRDNKNGGADVKDWTQGLLGNFSSGYTQGTVGVGVDAYGYLAIKLDGGDGTSGSGNMSRSDTVNPNNGARDVNDSQGKAGASVKFRVSKTELKFGDMQPSTSPVFAVGGSRIIPQTATGFQLQSSEVKDLDLEAGHFYSGSSQDKNARDGGLYANYAGQETNTIDYFGGKYGITENLSASLYGAKLEDIWNQYYANVNLTTPFSGDTSLNTDFNIYRTTDTGDSLVGDISNTTFSLATALSFLKAHTITVGFQKVNGDTPFDYIGVGKNNRGGDSIFLANSIQYSDFNGPGEKSAQIRYDLKMAEYGVPGLSFMTRYVKGWDIDGTNTPAGSAYAGLYGEDGKHHETNFEAKYVVQNGPAKDLSFRIRQAWHTANADQGEGDVKEFRLIVDYPLSIL
>LR134318.1|VEF12535.1|4623085_4623511_-|histidine-triad-(HIT)-protein
MFALDSRLQQDALVIGDFALCRLLLSNDSNYPWFILVPRREDISELFQLDVADQQQLWQETTLLAELLKDSFDADKLNVATLGNVVSQLHMHVIVRKRGDAAWPAPVWGKHPAKPYSAEQVAAIRERLRLVLTEDFTFLEG
>LR134318.1|VEF12534.1|4622875_4623082_-|protein-SlyX
MSVEQRVNDLESRLAFQDDTIQALNDVLVEQQRVVDRLQLQMAALLKRQEEMSGQFGSFEEDAPPPHY
>LR134318.1|VEF12533.1|4622198_4622801_+|cold-shock-protein
MLKIVHLLMGAAALLLSFIPSLKSEAVPYLQQPDALYLAFFGLLNLVIAPVIPYWNKGPRQHLQNLVSALLVLTVVLQTLTLIAPMPVIAGQPAVLFSLVIALVAVVLHLAVSFYKSSPAAAPAHYDMSNRDTGTVKWFNTSKGFGFISRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKGLQAEDVIAALPRR
>LR134318.1|VEF12532.1|4621413_4621884_-|DNA-binding-stress-protein,-Dps-family
MAIDIGISEEDRKSIVEGLSRLLSDTYVLYLKTHNFHWNVTGPMFRTLHLMFEEQYNELALAVDSIAERIRALGFPAPGAYATYAKLSSIKEEVGVPSAEDMIKQLVEGQEAVTRTARGIFPLLDKVSDEPTADLLTQRMQVHEKTAWMLRALLEA
>LR134318.1|VEF12542.1|4631268_4632216_-|protein-MutT
MKRVHVAAAVIRDDSGKILIARRADTQHQGGLWEFPGGKVEADESVESALARELHEELGIVVDAARPLIKVRHDYPDKQVLLDVWEVSAFSGEPHGAEGQPLAWVTGKELIDYEFPAANQPIVAAARLPAQYLITPEDLETPALLRGIQKAIAGGIKLIQLRAPNGYDPKYRDLAVDAAGLCAGKAQLMIKGPFEWLGDFPSAGWHITSAQLRKYAAAGRPLPAERWLAASCHNAEELALAEQMGVDFVTLSPVQPTQTHPDAQPLGWEQAQALIEGFSKPVFLLGGVGPAERDKAWGVGAQGVAGIRAFWPESL
>LR134318.1|VEF12543.1|4632212_4632845_-|glutathione-S-transferase-like-protein
MSPHLIIGDKLLSSWSLRAALALELTGAPYSEELIKLGKPDTREQLLKHSPTAKVPLLKTARGTIADSLAIAEYLAEQFPSEQLWPSDIFARAQARSACAQMHSGFFAMRNHMPFNLNHDAPLNPVPPEVKTDIERMLALWAECRAAATEEGPFLFGRVSLADAFFAPIAVRLRTYQVKLPAVDEAYVETVYQWPAFKAWQKAGLEELNP
>LR134318.1|VEF12544.1|4633024_4634242_-|bifunctional-amino-acid-N-acetyltransferase
MAVGLGPLPTLHPVAGFELGIASAGIKRPGRKDVVVMRCAEGSTVAGVFTLNAFCAAPVILAKKRVQNPVRYLLTNTGNANAGTGEPGLAAAERTTAKLAELTGVDASQILPYSTGVIGEPLPVEKIESALQAALDDLSENNWEAAATGIMTTDTLPKGASRQFEHDGVTITVTGISKGAGMIRPNMATMLGYIATDAKVSREVLHNLMLDGANKSFNRITIDGDTSTNDCCMLIATGKAALPEITRAEGELFAKLKQAVFEVCMDVAQAIVRDGEGATKFVTVEVNGGGNHQECLDVGYTVAHSPLIKTALFASDPNWGRILAAVGRAGVPDLDVSKIDVFLGDVCIASRGARAATYTEAQGSAVMQQEEITIRIELGRGDCSETIWTTDLSHEYVKINAEYRT
>LR134318.1|VEF12545.1|4634362_4637098_-|preprotein-translocase-subunit-SecA
MFAPLLKKLFGSKNEREVKRMLKTVQLVNAFEEQMVALSDDQLRAKTAEFKARIAKGETLDKLLPEAFAVAREAGKRVMGMRHFDVQLVGGMTLHEGKIAEMRTGEGKTLVATLGVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLTVGVVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSMEEKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYTEINKLIPQLELHVEEVEGEVTKAGHYTVDEKTRQVELNEAGHQFIEDMLTRVGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFNRNIEYIVQDGQVVLVDEHTGRTMPGRRLSEGLHQAIEAKEGLNIQAESQTLASTTFQNYFRLYTKLSGMTGTADTEAFEFHQIYGLEVMVIPPNKPLARKDYNDLVFLTAEEKYAAIVADIKESMAAGRPVLVGTATIETSEHMSALLVKEGIEHKVLNAKFHEKEAEIIAQAGRPGALTIATNMAGRGTDILLGGNWEVEVASLENPTPEQIAQIKADWQKRHQQVLESGGLQVIASERHESRRIDNQLRGRAGRQGDAGSSRFYLSLEDSLMRIFASDRVKNFMKALGMQPGEAIEHRMVTNAIEKAQRKVEGRNFDIRKQLLEFDDVNNEQRKVIYHMRNTLLAADNIGETIADFRQDVLNATVSAHIPPQSLPEQWDVAGLEATIASDFGVNLPIQQWLDEDDHLYEETLREKLMAELIAAYNEKEDQAGAEALRSFEKQIVLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQEYKRESFTLFSELLDSIKRDSIRVLSHVQVRREDPEAEEQRLRQEAEALAARMQFEHAEAPGLDQPEVLGEEVDVALATAPVRNEQKLGRNELCFCGSGKKYKHCHGQIQ
>LR134318.1|VEF12546.1|4637405_4637861_+|Zn-ribbon-containing,-possibly-RNA-binding-protein-and-truncated-derivatives
MAFRPLTAKAPAVLLREAKPLKAILGHAQRLEHLQRLLESQLQPAAREHCRVAKWREGELSLVVTDGHWATRLRYQQKRLQRQLQLFDEFANITRIKFSVRPPIVQHRAVGHTMDLSSDAAQTIQSTADGITDPGLRAALERLAAHAKGKT
>LR134318.1|VEF12547.1|4637950_4639438_-|ATPase
MPDSLHLVIGADPAAQPIAQAMRLANRHGLIAGATGTGKTVTLQRLAEAFSDAGVAVFAADIKGDLCGLGAAGNPQGKVAERIAGMPWLEHTPQAYPVTLWDIHGESGHPLRTTLSEMGPLLIGSLLELTDSQQSALYAAFKVADREGLLLLDLKDLKALLNHLKDNPQLLGEDAALMTTGSSQALLRRLATLEQQGAEALFGEPALQLEDILQPTADGRGRIHLLDASRLVHEAPKVYATFLLWLLAELFEQLPERGDADKPLLALFFDEAHLLFGDTPKALQERLEQVVRLIRSKGVGVYFVTQSPADLPDDVLAQLGLRIQHGLRAFTAKEQKSLRAVAEGFRPNPAFDSLSVLTELGIGEALVGTLTEKGTPEMVQRVLVAPPQSRIGPLSATERTVLIAGSPFKGRYDKPIDRESAYEILMGRKGLAPEADVPAGKPAPEEPSLADRAGEFLGTAAGQALKSAMRQAANNLGKQLVRGLMGSLLGGSKRR
>LR134318.1|VEF12548.1|4639624_4641514_+|Cache-sensor-containing-chemotaxis-sensory-transducer
MNKNLRFSHKILLAAALIVIAAFASFTLYNDWLQRNAIRDDLNNYLNEMGEVTAGNIQTWLSGRILLIENAAQNIAINPEPATVASLLEQKSLTSTFMATYLGDATGHFTIRPDVKMPDGFDPRVRPWYKGAESSSTSTLTEPYIDAATGQLIISIATASKKAGQNVGVVGGDLSLQSLVDTLAARNFDGMGYVFLVSADGKILVHPDKALVMKSLKEAYPQDTPRISSDFSEVTVDGKTRIVTFAPIKGLPSVNWYIGLSIDKDQAYSMLSEFRTSAVIATVIAVAIIIALLGMLIRILIQPLHVMTRAMEDIADGEGDLTKRLTIVNNDEFGILGTAFNRFVERIHGSIREVSSATGQVNEVALRVVAASNSSMFNSDQQASRTSSVAAAINQLGAAAQEIARNAAQASNQASDARGLAEDGQQVVERSIKAMNQLSSMLSASSTNIESLNSKTVNIGQILEVITSISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQTMIEELQVGARESVSTMSDSQRHSQDSVEIANLAGERLNSVTLRIGEIDGMNQSVATATEEQTAVVESINVDITEINTLNQEGVENLQATLRACSDLEQQASRLKQLVGSFRI
>LR134318.1|VEF12549.1|4641785_4642898_+|group-1-glycosyl-transferase
MHIADITMFYAPASGGVRTYLDAKHRRLGDRNAIRHSLLIPGARLGEHDGIYTVPAPALPFGKGYRFPLRLAPWRNVLQDLQPDLIEVGDPYLTAWAALDARRQLDVPVIGFYHSDLPLLVGNRMGHWVTPNIEAYVTRLYGNFDRVLAPSQVMADKLTGLGVRNVHVQPLGVDLHTFHPDARDPGLRGELGIADDTRLLIFAGRGSKEKNLPVLLKCMQRLGPRYHLLLVGSSMPAVVPDNVSVINEFCPASNVARLMASADALLHAGDQETFGLVILEAMACGIPVVAVAAGAFEEIVDDSCGLLCAPNNPQAMANAVRELFSRGCARLGQQARQHVERHYAWDTVVDSLLGHYHAVLGHTLPRVANG
>LR134318.1|VEF12550.1|4642890_4643661_+|deacetylase
MVEPMKTVCLVLHDVAPSTWVDYQPFVEAVDALGKVPMTWLVVPDFHRHDALEANPAFRQLLDARVGRGDELALHGYYHDDCESAPTTPRDWFMRRIYTHEGEFYRLSRDAALARLHAGLELFERYDWPVHGFVAPAWLMSDGTRQALRELPLSYTSDPQHLYRLPDFSAIDAPGLVWSARSAWRRGLSKIVSDQREQRWREAPVIRLGLHPVDMRHRFSRDYWLDTLARLLAEGRTPMTKIDWLARQRGQLERAA
>LR134318.1|VEF12551.1|4643657_4644653_+|membrane-protein
MKRSLLLLIGLLAAVLIPVVLGGGETWARLRGFPLNWLLIMFGMILLCWGINTLRLRLLLGDQREKVPPLRSLGVVMAAEFAYCATPGGSGGPLTIMALLARCGIRPARGSAVFAMDQLSDLLFFLCALSGILIYALFQHLSDRLEWLLTVSAVSLFGGLISCVLLARYHRALIRLSGRLLAGMNVTARTRRRWARKLLHFLAAFTDTLKLPWQTLIKVFALTCVHWLLRYSVLYLALRGLGADLQWAWSFLVQMVSLGAGQFSLLPGGAGAAELTSAALLAPMVGKSTAAAAILIWRVVTYYFYLLVGGPVFVLMLGKPLLKKLMNVRQA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR134318_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134318_6

4694592-4694695

Orphan

Consensus_repeat	Method
TGTAGGAGCTGCCGCAGGCTGCGATCTTTTGATCTTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134318_6

>merge|LR134318|6|4694592-4694695|CRISPRCasFinder
TGTAGGAGCTGCCGCAGGCTGCGATCTTTTGATCTTGAACGACAAAAATCAAAGATCGCAGCCTCTTGTAGGAGCTGCCGCAGGCTGCGATCTCTTGATCTTGA

>LR134318|6|6|4694592-4694695|CRISPRCasFinder
TGTAGGAGCTGCCGCAGGCTGCGATCTTTTGATCTTGA	ACGACAAAAATCAAAGATCGCAGCCTCT
TGTAGGAGCTGCCGCAGGCTGCGATCTCTTGATCTTGA

Protein	Signature genes	Signature genes Name	Protein_function
LR134318.1\|VEF12576.1\|4686946_4688707_+\|periplasmic-sensor-Signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
LR134318.1\|VEF12573.1\|4677939_4679463_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|224862
LR134318.1\|VEF12571.1\|4675458_4676394_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|235575
LR134318.1\|VEF12586.1\|4700859_4701741_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
LR134318.1\|VEF12575.1\|4684303_4686868_+\|insecticidal-toxin-protein	unknown	unknown	gnl\|CDD\|274730
LR134318.1\|VEF12585.1\|4699004_4700642_-\|acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236041
LR134318.1\|VEF12579.1\|4693261_4694581_+\|alpha-ketoglutarate-permease	unknown	unknown	gnl\|CDD\|340925
LR134318.1\|VEF12574.1\|4679670_4684179_+\|toxin	unknown	unknown	gnl\|CDD\|377060
LR134318.1\|VEF12587.1\|4701858_4702080_-\|NAD-dependent-epimerase/dehydratase	unknown	unknown	gnl\|CDD\|225462
LR134318.1\|VEF12589.1\|4702482_4703373_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380403
LR134318.1\|VEF12584.1\|4697556_4699008_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143428
LR134318.1\|VEF12583.1\|4696478_4697408_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
LR134318.1\|VEF12582.1\|4695728_4696082_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|367760
LR134318.1\|VEF12577.1\|4688706_4690035_+\|two-component,-sigma-54-specific,-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
LR134318.1\|VEF12578.1\|4690140_4693056_+\|insecticidal-toxin-protein	unknown	unknown	gnl\|CDD\|274730
LR134318.1\|VEF12581.1\|4695441_4695684_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF12570.1\|4674534_4675284_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235852
LR134318.1\|VEF12588.1\|4702196_4702373_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134318.1\|VEF12580.1\|4694807_4695437_+\|Flavin-reductase-like,-FMN-binding-domain-protein	unknown	unknown	gnl\|CDD\|224766
LR134318.1\|VEF12572.1\|4676386_4677493_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635

Protein	Function_ID	Function_description	E-value
LR134318.1\|VEF12576.1\|4686946_4688707_+\|periplasmic-sensor-Signal-transduction-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	0
LR134318.1\|VEF12573.1\|4677939_4679463_+\|fumarate-hydratase	gnl\|CDD\|224862	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion].	1.23218e-144
LR134318.1\|VEF12571.1\|4675458_4676394_-\|oxidoreductase	gnl\|CDD\|235575	PRK05713, PRK05713, iron-sulfur-binding ferredoxin reductase.	0
LR134318.1\|VEF12586.1\|4700859_4701741_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	3.91564e-84
LR134318.1\|VEF12575.1\|4684303_4686868_+\|insecticidal-toxin-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	4.90272e-25
LR134318.1\|VEF12585.1\|4699004_4700642_-\|acetolactate-synthase-large-subunit	gnl\|CDD\|236041	PRK07524, PRK07524, 5-guanidino-2-oxopentanoate decarboxylase.	0
LR134318.1\|VEF12579.1\|4693261_4694581_+\|alpha-ketoglutarate-permease	gnl\|CDD\|340925	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters. This subfamily includes Escherichia coli alpha-ketoglutarate permease (KgtP) and similar proteins. KgtP is a constitutively expressed proton symporter that functions in the uptake of alpha-ketoglutarate across the boundary membrane. Also included is a putative transporter from Pseudomonas aeruginosa named dicarboxylic acid transporter PcaT. The KgtP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0
LR134318.1\|VEF12574.1\|4679670_4684179_+\|toxin	gnl\|CDD\|377060	pfam03534, SpvB, Salmonella virulence plasmid 65kDa B protein.	7.96349e-99
LR134318.1\|VEF12587.1\|4701858_4702080_-\|NAD-dependent-epimerase/dehydratase	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	9.29385e-26
LR134318.1\|VEF12589.1\|4702482_4703373_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|380403	cd06999, cupin_HpaA-like_N, AraC/XylS family transcriptional regulators similar to HpaA, N-terminal cupin domain. Members of this family contain an N-terminal cupin domain and a C-terminal AraC/XylS family helix-turn-helix (HTH) DNA-binding domain, similar to Escherichia coli 4-hydroxyphenylacetate catabolism regulatory protein HpaA (also known as 4HPA). HpaA is encoded by the hpaA gene which is located upstream of hpaBC. It is activated by 4-HPA, 3-HPA and phenylacetate, and represents a member of the AraC/XylS family of regulators that recognizes aromatic effectors. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.94603e-51
LR134318.1\|VEF12584.1\|4697556_4699008_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|143428	cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.	0
LR134318.1\|VEF12582.1\|4695728_4696082_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|367760	pfam03992, ABM, Antibiotic biosynthesis monooxygenase. This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.	9.07482e-09
LR134318.1\|VEF12577.1\|4688706_4690035_+\|two-component,-sigma-54-specific,-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
LR134318.1\|VEF12578.1\|4690140_4693056_+\|insecticidal-toxin-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	1.04549e-28
LR134318.1\|VEF12583.1\|4696478_4697408_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	2.28176e-60
LR134318.1\|VEF12570.1\|4674534_4675284_-\|enoyl-CoA-hydratase	gnl\|CDD\|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	1.21934e-78
LR134318.1\|VEF12580.1\|4694807_4695437_+\|Flavin-reductase-like,-FMN-binding-domain-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	2.56314e-38
LR134318.1\|VEF12572.1\|4676386_4677493_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.70531e-57

>LR134318.1|VEF12579.1|4693261_4694581_+|alpha-ketoglutarate-permease
MDNSNALPVGSAAAPVKERTTANRIKSIFSGSVGNMVEWYDWYVYAAFSLYFAKAFFPKGDTTAQLLNTAAIFAVGFLMRPIGGWLMGLYADKVGRKKALMASVYLMCFGSLIIALSPGYETIGIGAPILLIFARLLQGLSVGGEYGTSATYLSEMATRDRRGFFSSFQYVTLISGQLIALGVLIVLQNFLTTEELYAWGWRIPFAIGALCAVVALYLRRGMEETESFTKKEKAKESAMRTLLRHPKELLTVVGLTMGGTLAFYTYTTYMQKYLVNTVGMSISDSTTISAATLFLFMCLQPIIGGLSDKIGRRPILIAFGVLGTIFTVPILMTLHTIQTWWGAFFLIMAALIIVSGYTSINAVVKAELFPTEIRALGVGLPYALTVSIFGGTAEYIALWFKSIGMETGYYWYVTACIAVSLLVYVTMKDTQKHSRIVTD
>LR134318.1|VEF12578.1|4690140_4693056_+|insecticidal-toxin-protein
MAERPFKRNTVSAVAELSNSVHDRGSSLRISSGHRASNIRAHRRTPTLAAKDSRGGTVRVVDYLRTLPHEPAIALIKRQHFDVPGRLVAQSDPRLENPAISTVYALSGLPLEVSSADAGWRLTLPGLAGLPLQCWDGRGSHWRIDYDDQLRMVAIEESAIGDVDSFFYADASAEADVNSRGQLIEQTDASGSLKFASFSLSGAALCETRTFHDGEAFSSYWVLGPDGAVLEQTDAGGHRRRSRYDIAQQLQSVQLQVRGQPGWQELMLDTQYDASGKMIEQKNGNNVTSTWRYHEADGRLYQHTAQVGQQPPLQDVSYEYDPVGNLTCAFDRTFVPTFFRNQRVDGRREFIYDSLYRLHSATGYDDCPPSDIPGLPSPTHPDDRRNYVQTYTYDHGGNLTELRHQRDGKQYTRHMRIEPISNRGIRWTEGDPEPDFSKLFDLNGNLLAVQPGQPMLWTALGELAKVTLVHRDESSDDDEVYRYSQGSRVYKRLNRYAGAINHFRDVRYLPGLEIRRQHNGEELHVITLGNVRCLKWVASPPSGVDEFQLRYSLHDPLGSCVMEVDHQAAVITHEGYYPFGGTAWMAARSAIEAPYKFIRYSGKEMDVSGLYYYGARYYAPWLQRWISPDLAGAVDGLNLYGFVGNNPLSYVDHDGQTRFGVETKAERDARKASSASELRKQSANANLSRAIERHFQFLKILDQRVSAVSSQVKNLHSGSALAGSIAKRSGAFVAKQTVSYGVGIGVGALTGVLGTGLGPVGTAFGVSLGFGAKAATSLAIDYVLEKRGISTSIALKSRKLNPEKVMQKREYRSADLFGYAALKWKKTFDGVKDPTELNTIKGLNVAIPLAGSAAMKLHDTPLAGEIGAMIGVVSGAMEIIYEAERARNGMTPAMEQKLASLRGYVPQLIDLLDRGLEEVNASFDAANRDSTHHNKMLVKLFGKGDGVSRESMAQATNATIGRLRNLHSMLH
>LR134318.1|VEF12577.1|4688706_4690035_+|two-component,-sigma-54-specific,-Fis-family-transcriptional-regulator
MLNAVMVVDDESSIRSAVEQWLSLSGFEVQLFSRAEDCLAALPAHFAGVILSDVRMPGIGGLALLAEVQKRDADLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPETLLGSLRRALDKRRLVLENRALHAQADNRARLDATLLGVSRSLQTLRRQVLDLATLPVNVLIRGETGSGKELVARCLHDFGPRANKPFVALNCAAIPEQLFEAELFGHESGAFTGASGKRIGKLEYADGGTLFLDEIESMPLAQQVKLLRVLQEQKLERLGSNQSIRVDLRIVAATKPDLLDEARAGRFREDLAYRLNVAELRLPPLRDRREDIPLLFETFAQSAAQRLGRTFPPLSGAQLSHLLSHDWPGNVRELANVAERQVLGLDEPAPGIDPGQSLAAQQEAFEAQCLRAALTRHKGDVKAVLEELQLPRRTFNEKMQRHGLSREMFVSP
>LR134318.1|VEF12576.1|4686946_4688707_+|periplasmic-sensor-Signal-transduction-histidine-kinase
MLPTSRTLRLSLYTLLIVAGTVLAATLAIRHAERQALEEDAVRANQQLALYANSLHTLIDRYRALPAVLALDPQLRSALAGPVDAEQQAALNLKLEKINGAAQSSTLELLDHTGLAVAASNWRLPSSYVGHNYGFRPYFSQTRTQGTGRFYAVGVTSGIPGYFLSSAVLDDNRQFLGAMVVKLEFPELEREWSQGSDTLLVSDARGIVFIANQPGWRYRALRPLSASDMAEIKATRQYDKQSLVPLTHLPLRRFDDNSDLRRVEGPQGTADYLWESLPLTAEGWTLHLLRRPQVAFEDLRNAGLAAAGVWLALVFLLLFLNQRWRLAKMRQRSREELEQLVEERTRDLRTAQEGLVQSAKLAALGQMSAALAHEINQPLTAQRMQLATLRLLLDHGRVDDAYKALKPVDDMLTRMAALTGHLKTFARKSPSGLRERLDLAAVVDQSLQLLDARLRDEQVSLVLHLTRPAWVRGDAIRLEQVLINLLRNALDAMQGKACKRLEIRLEADEQLWRLSVIDNGGGIAQAHLDQVFDPFFTTKPVGDGLGLGLAVSFAIVHESGGRLSAENGDSGAVFSLTLPIDLEAHI
>LR134318.1|VEF12575.1|4684303_4686868_+|insecticidal-toxin-protein
MEHDLAGRSVAQRDPRLPSPCLVTTYSLLDQPLRTDSVDAGMRLSLPGLAGQTVQRWDERDAVWLMTYDRLMRVLSVTNTAIPQDDELFEYADASADAGNNLRGRHQRLTDPSGCAEVHSYSLAGHPQRETRTFHDNKSFTSQRTYGPLGAVVALADAGQHQQTMFYDQAGQLKATRLTLRDRIEDWWVLLNAQYNAAGQLVLQEIGNGVSVHWHYDPANSRLVRQWAHKGNEPPIQDFEYTYDPVGMITRIFDAAVKPVFFANQRCDGTRTFTYDSIYQLSSATGCSAAAQSKTAARPQSCDPRDLRNYRQTYEYDDGGNLTRIIHVREGASHTRHIFIDPHSNRGVLHESDDPPPDFSRLFDPHGNLLERLPGQPLRWNSRDQLQSVEMISRSDGQEDAEHCWYSQGVRVCKRHDHYGRNARHFHQVRYLPGLEISCKDNGEELHAITVMTGAGTVRCLYWQSDPANVGSTQLRYGLNDHLNSCLIELDQRAQMISCEQFFPFGATAAFTLRSDIEVDYKIIRYSGKELDRSGLYYYGERYYAPWLGRWTQPDRHGIADGLNLYCMTGNNPINFIDQQGATKVPAQTSIAMPTPGSSRRPSSSTAGAPDPVTDPQANPPGHLPPQPEQTWRERVKSAALTAVNSRVGIALLPVGTSSPANAAVVSAILTASAQLALHASLFNPIWSPPGTWDPNSGGALPPVDVTQNANRVFNLATVGVTLAATVGGMILGPVVGGLVDELRGTKLKADKDKRAGAALDTTEQLIAKLQLKENPTRKALDALHDQILEAEELAGITWRSMGMLEKISRMRPMDDSGSSRRSSTSFIGAQTSAFRRDDPSRTRTLRSCTGRKS
>LR134318.1|VEF12574.1|4679670_4684179_+|toxin
MADQELNIPTPSIAKSSSFTMTGQGFNNVGPTGGASFQLPLPVSGGRGADPQLAMTYNSQSGNGPLGLGWSMGHGQISRRTNKGTPRYDDDDEIVGHDQQICTRERNVDGSLKSRIETTFNGKEIGRHTVVRYTPEVESDFSLRERWEGMDPTDSTKKLPTFWLISGPNGSLHLYGKTADSRVADPQDPLRVATWLLCETMTAHGEHIYYEYKPDEADADDFRDYRSQRYLRRVLYGNFKASQDLYSWSMEDPGELDWHFHLLFDYGERSTSLSVKPEYDVPNTQPCPVRPDASSAFGHGFEIATRRRCAQVLMFHYFPTELGPDPVLVRRLLLKYNEHIADWSYSQLTSAYYQAWGPGGDDDVELSPPVQFEYAPLELNQTPTRLFAEENMPGIGDGRHYQCVDLYGEGVSGFLCRYDQAWFYREPVRGKSGPDHIAYGPWTVLDKIPVINSKKPVMQILTSLSGSGRFDWLTAQPGFAGIRSMNPDRSWSEFKTFSKTPTELFGAFAQFGDLANEGLMSVALIGPRSVRFYRSNVEEGFQQAEEVLRDPDDDRLPLFSNARSEVVMFGNLLASDTTELCRIRHDEIKCWPNLGFGKFGKGRVLSGPVFEYSTFDAARIRIADLDGSGAPALIYLNDRTFDIYLNQGGNRLATDPIRIRWPEDVQYERTCEVTFADLQGLGCASLILTVPHMKPRHWRYDFVAAKPYLMRSSNNNMGCSASIVYRSSAQEWLDEKQQWLAANPEGVPVCHMPLNVQVVKQQFQLDEITGNRLSQSFNYREGYYDPWAREYRGFGYLEQTDSERQTATEDTGFTAPIRACSWYIIGQFMNRPRTGYFAGDDEAVPLGATVITRYDALQERDIPLTPAPDSVLPYEIARGMSGTLMRTEIYNAEDPPLTAKPYTIEEYRYLVREVRPKGAHYPDAIILPLSLEKISYQYEQFIDDPLCRHELGLRWNTYGALTHSLVVSYARRRTVTDAPPFEDVDEQRWWCDAHDEAQQSYYINESRSRFIDLDTDTQRRLGLAWQMRGNALRLPKGNLPNGLNPGEVSFEQLTLHQDSTQWNALRTLTQQSEQRYLKTSDQSVLDSGEAEYEALSGPLELAQMDETALAAYDVVPPPFDIRVALKELGYKSMKFFFETSPPSEADNLWSTTYNFAKYADVGGFFKVREYNETPCHGVTKIQYDDFQLKVRSVELPDGCTTSVTHDYHTSLPSSILDANENTEEVIYDAAGQPLALSFYGTENGVAAGFRALSDFERPENLLPGPAISNPQAAIQCAATTLRKDYFSWMGLLPADISPELLAIWVASGDVLPSGHICASARQRLERRGALNAADQALSEVIANVERVPVHSVILTADRYPDDPVPAQIQISKACFDGFGRELQTQQLVDPGMAYAVDVDGTLIVDGDELREVFADSRWRISARVEYNNKGLPVRKFRPFFADTYRYVNDASLREHGYFDQLFYDVLGREVQLTNAMGHFSRETYHPWYQISEDFNDTAEEQP
>LR134318.1|VEF12573.1|4677939_4679463_+|fumarate-hydratase
MTVIKQDDLIQSVADALQFISYYHPVDFIQAMHEAYLREESPAARDSMAQILINSRMCATGHRPICQDTGIVTVFVRVGMDVRWDGATMGLDDMINEGVRRAYNLPENVLRASILADPAGARKNTKDNTPAVIHYSIVPGNTVEVDVAAKGGGSENKSKMAMLNPSDSIVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAAVMAKEVLMESIDIHELKARGPQNRIEEMRLELFEKVNQLGIGAQGLGGLTTVLDVKIMDYPTHAASLPVCMIPNCAATRHAHFVLDGSGPASLEAPPLDAYPEIVWEAGPSARRVNLDTLTPEDVQSWKPGETVLLNGKMLTGRDAAHKRMVEMLNKGETLPVDLKGRFIYYVGPVDPVGDEVVGPAGPTTATRMDKFTRQILEQTGLLGMIGKSERGPTAIEAIKDNKAVYLMAVGGAAYLVAQAIKKSKVLAFAELGMEAIYEFEVKDMPVTVAVDSKGESVHITGPAIWQQKIIESLAVEVQ
>LR134318.1|VEF12572.1|4676386_4677493_-|diguanylate-cyclase
MTHNAIQRLLLKRFALAAATYGLALLLLWLAFFTGHYQQPLSGVAIGSALVVISQATLFGLFWSGRNQRFADPSLTEVQVLMGLGWQTWLIAHVDEARGAFLVFYVLILLFGLFHLTRRVFIRCALLVFFSFSAITLWDAYHFRLAEPALAALQVCILAMVLAWLVLYARFVQVSRQRQRQRRFALQAHQDTLRGMMRQLEDLVATDELTGLFNRRHFLRIASRELNALDSDVVHGLALIDLDHFKRINDLHGHAAGDQVLQAFAAVAQACLRDGDVLARYGGEEFVVLLPDCDAERLTACCERLRIAFTEVELMGLQVRNLSLSAGMTLLAVGDDLDEALQRADQALYRAKRDGRNRCAAAWENVDA
>LR134318.1|VEF12571.1|4675458_4676394_-|oxidoreductase
MPELRVGDRHWTVAAGSNLLDALNQNGVAVPYSCRAGSCHACLVQCVQGVPTDNRPDALSAEQREQGWRLACQCQVAENLQVHTFDPLADGRPATVEALDWLSDSVLRLRLAPQRPLRYSAGQHLVLWIGHIARPYSLASLPEEDRFLEFHLDCRQPGEFVDAARKLQIGDAIRLGELRGGALHYDPDWHGRPLWLLAAGTGLGPLFGVLREALRHDHQGAIRVIHLADDARDHYLAKPLAALAAQRENLSVELWTAAESAAALAQLRLVSRQTLALVCGSTASVDVFAKRLFLAGLPRNQLLADVFLSRG
>LR134318.1|VEF12570.1|4674534_4675284_-|enoyl-CoA-hydratase
MTEAIVLERERGLLTLRFNRPDKKNALTRAMYSRLAEALKQADSDPEINAVLITGSAECFTAGNDIADFVEQPPSDLDSPVFHFMLNLLECRKPVVAAVAGAAVGIGTTLLLHCDLVYVARDARLRMPFVNLGLCPEFGSSLILPRMQGQAKAAELLLLGEGFSGEQAAQWGIATEALSSGAAAVSKARKMALRFDELPAEAVRISKQLMKAPDRELIRQVIEEEGVLFTQRLKSPEAVAALNGFINRH
>LR134318.1|VEF12580.1|4694807_4695437_+|Flavin-reductase-like,-FMN-binding-domain-protein
MPDDIHFYEPANGHGLPHDPFNAIVGPRPIGWISSHDAQGQLNLAPYSFFNAFNYIPPIIGFSSVGRKDSLNNIEQTGEFVWNLATRPLAEQMNQSCAMVAPEVNEFELAGLTTVASKVISVPRVAASPVSFECKVTQIIQLQRADGATVPSWLILGEVVAVHIAKRLLKDGIYDTAAAEPILRGGGPADYFQVGPEALFKMWRPGAGQ
>LR134318.1|VEF12581.1|4695441_4695684_-|Uncharacterised-protein
MARKEFERFEAVSAVVPVELGGNKGYYAAIAVKALVDGGAPRFHKLLDEQIFPGAIAADEAAINELDKLHGVTDDAELIW
>LR134318.1|VEF12582.1|4695728_4696082_-|antibiotic-biosynthesis-monooxygenase
MSKHMPVSHMAFVRAQAGRSAELGVRLSALIEVSRAAPGCLSFSLQQSQCDAELWLVSGYWSSQQMMTAYFNSASMEVFAELVQDLVVNSLDFHTFRDVSAAQALGQCPAPVHKLAG
>LR134318.1|VEF12583.1|4696478_4697408_+|AraC-family-transcriptional-regulator
MTSFDRFQAEPSADMEKQRAELAAIIRRNTTDDGSYQTAIGSLYMSRHTRSHDFAPVLAQPALCIMAQGRKEVRLADEFFNYDPLNYLVVSVSMPLSGRVVNVSPEEPILAVRLDIDPAEITALIADAGPMGVPTRPTGRGLYVEKIDSSMLDAVLRLARLLDAPKDIAMLAPLIRREILYRLLRSPQGHRLYEIAITNSQSHRISQAIKWLNGNFEQPLRIDDLAKEVNLSVSTLHHRFKAMTAMSPLQYQKQLRLQEARRLMLAEGLEASAAGYRVGYESPSQFSREYSRLFGAPPSRDLARLRLSV
>LR134318.1|VEF12584.1|4697556_4699008_-|betaine-aldehyde-dehydrogenase
MMNFPTTLDGIYLNGQWSAGPAHLRVINPATEALLTTVNGGDEQAVDQAVTAATQAFPDWSRTSGAERGAILRNIANGVRNGREQLITLQSSNNGKPQFEAAIDVDDVIATFEYYAELAEGLDAAGDTNVPLPSEDFSARLRREPCGVVGLIVPWNFPMVTTAWKLAPALAAGCCVVLKPSEVTPLPELELAAIIAECGLPNGVFNLVCGTGLAVGAPLSADPRIAKISFTGSNAVGVQVMQRAAETVKGVSLELGGKSSLLVLADADIDLAVELACGGGFFNAGQMCSATSRVLVADELADEFLERLRKRAQAIRVADPFDPEVEMGALVNQAQYQRVLGHIDRGLSAGARLLCGGNRPADLPRGYFLQPTVFTDVPLDSALWREEIFGPVLCVRRFSTQAEAIALANDTQFGLVASVVTRDAATADRVANELQAGLVWINAPQVIFPQTAWGGYKQSSIGRELGPWGLAAFQEIKHVVRAV
>LR134318.1|VEF12585.1|4699004_4700642_-|acetolactate-synthase-large-subunit
MATCGEVLVKLLENYGVEQVFGIPGVHTVELYRGLARSSINHVTPRHEQGAGFMADGYARTSGKPGVCFIITGPGMTNITTAMGQAYADSIPMLVISSVQSRSQLGGGRGKLHELPNQSALVGGVAAFSHTLMSAAELPAVLARAFALFQAGRPRPVHIEIPLDVLVEEADDLLASVPVCIDRAGAAPAAVSRMAELLATAQRPLILAGGGAIEAAAELVELAERLDAPVALTINAKGLLPSTHPLLIGSTQSLVATRALVAEADVVLAIGTELAETDYDVTFAGGFKIPGKLLRIDIDADQTVRNYPPHVALVADSRHAACALLAAMSQQPLAQRRQDWGQVRAARLREDLATTWDAATLAQTRFLETVLDELPDAVLVGDSTQPVYTGNLTFNPERPRRWFNSSTGYGTLGYALPAAIGAWLGGRVESGERPPVVCLIGDGGLQFTLPELASAVEARTPVIVLLWNNQGYEEIKKYMVNRAIEPVGVDIYTPDFIGVAKALGCAAEAVSSVAQLRGALRAANDRQGPSVIEIDQRQWMQAVAQ
>LR134318.1|VEF12586.1|4700859_4701741_+|LysR-family-transcriptional-regulator
MKRLPPLPALHTFLITAQCCNFTRAAEQLHITQGAVSRQIGGLEEHLGYPLFIRLARGLALTAEGREWLPRVEQVFAAIGEATEQIGQTRQTLQLKAPSCVMRWLLPRLLQWQKERPDVPVKLTASLQHGVDFHREQFDAAVIYGQPPDHSPGALHLFDEQLTPVCSPQLLKGSPALNSPADLQQHLLLHPTHDIEDWSVWLDEAGLQLGNLGSGQHFETLDQAMSMASHGTGVAIGDWSLIGDDLNAGRLVMPFALKVKTGLAYYVVMPAGVEPSPALEELMLWLVEQAQTR
>LR134318.1|VEF12587.1|4701858_4702080_-|NAD-dependent-epimerase/dehydratase
MIDSAGFPEEYKTEASAGAAFLQALLQEQQLDWTFVSPSAEFVEGERSGTFRLGQDHLLETPKHSRQRFTIEY
>LR134318.1|VEF12588.1|4702196_4702373_+|Uncharacterised-protein
MNIKTKRYAAIFITCAATLALYGTAAWRVEQLRQLPREYASCNYERCIPHNATLNALR
>LR134318.1|VEF12589.1|4702482_4703373_-|AraC-family-transcriptional-regulator
MNKPELPSIPVFKLYGESLDWPTPDLLHCETISSRSREHEWEIKPHRHADLCQLLFVFKGQAELEIEGQRTQLDTPAIQVLPPLSVHGFRFSEDVEGFIVTLATPLITHLQAQLGDSVHALAHAEHYPAGNDGDYLNSLFTALQAEYNGHQPAREMLMHALVSVIMVWVSRQAIVRHKASQRPQRQREYLNGFIQLVEETYRQHVKVEDLAHRLGISVSHLNGTCRELAGQPALQIMHERQLLEAKRLLTYTSMTIYEMSELLGFSDPTNFTRLFRRRVGISPKAFRDRLKAEQQT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

791893 : 892289

108

Pseudomonas_phage(54.17%)

head,portal,integrase,protease,plate,capsid,tail,terminase

attL 855552:855577|attR 893238:893263

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF08166.1\|791893_793393_+\|integrase	putative phage integrase	G9FGY1	Rhodococcus_phage	2.0e-10	29.0
VEF08169.1\|793873_794404_+	Uncharacterised protein	NA	NA	NA	NA
VEF08172.1\|795080_795596_+	Uncharacterised protein	NA	NA	NA	NA
VEF08175.1\|795597_795921_+	Uncharacterised protein	NA	NA	NA	NA
VEF08178.1\|796185_796608_+	Uncharacterised protein	NA	NA	NA	NA
VEF08181.1\|796654_797680_+	Uncharacterised protein	NA	NA	NA	NA
VEF08184.1\|797846_798008_+	Uncharacterised protein	NA	NA	NA	NA
VEF08187.1\|798230_799253_-	transcriptional regulator, LysR family	NA	NA	NA	NA
VEF08190.1\|799360_800887_+	methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
VEF08193.1\|800897_801785_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
VEF08196.1\|801896_802247_-	cupin	NA	NA	NA	NA
VEF08199.1\|802289_803228_-	LysR family transcriptional regulator	NA	NA	NA	NA
VEF08202.1\|803460_804225_+	membrane protein	NA	NA	NA	NA
VEF08205.1\|804214_804529_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
VEF08208.1\|804714_805305_+	NAD(P)H-dependent quinone oxidoreductase	NA	NA	NA	NA
VEF08211.1\|805422_806385_+	LysR family transcriptional regulator	NA	NA	NA	NA
VEF08214.1\|806488_807382_+	putative polysaccharide synthesis protein	NA	NA	NA	NA
VEF08217.1\|807872_809222_+	gluconate transporter	NA	NA	NA	NA
VEF08220.1\|809237_810098_+	RpiR family transcriptional regulator	NA	NA	NA	NA
VEF08223.1\|810099_811557_+	amidohydrolase	NA	NA	NA	NA
VEF08226.1\|811754_812123_+	glyoxalase/bleomycin resistance protein/dioxygenase	NA	NA	NA	NA
VEF08229.1\|812296_813313_-	AraC family transcriptional regulator	NA	NA	NA	NA
VEF08232.1\|813500_815105_+	alkyl-dihydroxyacetonephosphate synthase	NA	NA	NA	NA
VEF08235.1\|815101_816697_+	FAD-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
VEF08238.1\|816693_818253_+	FGGY family of carbohydrate kinase	NA	NA	NA	NA
VEF08241.1\|818363_821198_-	toxin	NA	NA	NA	NA
VEF08243.1\|821194_825673_-	toxin	NA	NA	NA	NA
VEF08246.1\|825669_830220_-	toxin	NA	NA	NA	NA
VEF08249.1\|830248_832801_-	toxin	NA	NA	NA	NA
VEF08251.1\|832969_834889_-	chemotaxis sensory transducer	A0A2H4J162	uncultured_Caudovirales_phage	3.3e-18	39.3
VEF08253.1\|835036_835624_-	GCN5-like N-acetyltransferase	NA	NA	NA	NA
VEF08256.1\|835951_836845_+	putative hydrolase	NA	NA	NA	NA
VEF08259.1\|836880_837855_+	alpha/beta hydrolase	NA	NA	NA	NA
VEF08262.1\|838021_839017_+	AraC family transcriptional regulator	NA	NA	NA	NA
VEF08265.1\|839341_840031_+	ABC-type proline/glycine betaine transport systems, permease component	NA	NA	NA	NA
VEF08268.1\|840027_841026_+	glycine betaine/L-proline ABC transporter, ATPase subunit	G3M9Y6	Bacillus_virus	1.7e-26	35.5
VEF08271.1\|841028_841697_+	binding-protein-dependent transport systems inner membrane component	NA	NA	NA	NA
VEF08274.1\|841739_842633_+	substrate-binding region of ABC-type glycine betaine transport system	NA	NA	NA	NA
VEF08277.1\|842773_844318_+	amidase family protein	NA	NA	NA	NA
VEF08280.1\|844763_846632_-	ATP-binding protein	NA	NA	NA	NA
VEF08283.1\|846656_847040_-	pyrophosphatase	NA	NA	NA	NA
VEF08286.1\|847772_849035_+	cytochrome c biogenesis protein CcmA	NA	NA	NA	NA
VEF08289.1\|849031_849763_+	HNH endonuclease	NA	NA	NA	NA
VEF08292.1\|850076_851006_-	atp-binding protein	NA	NA	NA	NA
VEF08295.1\|850966_851854_-	bacteriophage protein	NA	NA	NA	NA
VEF08298.1\|852076_852352_-	Uncharacterised protein	NA	NA	NA	NA
VEF08301.1\|852351_853329_-\|integrase	phage integrase	NA	NA	NA	NA
VEF08305.1\|854282_854465_-\|integrase	phage integrase family protein	A0A1V0E8G8	Vibrio_phage	5.0e-09	49.0
VEF08308.1\|854483_854873_-\|integrase	phage integrase family protein	A0A1V0E8G8	Vibrio_phage	1.3e-33	48.8
VEF08311.1\|854824_855364_-\|integrase	phage integrase family protein	A0A1V0E8G8	Vibrio_phage	3.5e-26	40.8
VEF08314.1\|855542_856718_+	Uncharacterised protein	NA	NA	NA	NA
855552:855577	attL	NA	NA	NA	NA
VEF08317.1\|856707_857901_-\|integrase	integrase	A0A1W6JTA0	Pseudomonas_phage	4.2e-181	79.0
VEF08320.1\|858060_858321_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
VEF08323.1\|858317_858527_-	Uncharacterised protein	NA	NA	NA	NA
VEF08326.1\|858608_858941_+	Uncharacterised protein	NA	NA	NA	NA
VEF08329.1\|858894_859107_-	Uncharacterised protein	NA	NA	NA	NA
VEF08332.1\|859103_859370_-	Uncharacterised protein	A0A2H4J399	uncultured_Caudovirales_phage	6.2e-08	58.0
VEF08334.1\|859357_859738_-	carbon storage regulator	J7I430	Pseudomonas_phage	2.5e-10	62.7
VEF08337.1\|859825_860206_-	LuxR family transcriptional regulator	A0A0A0YWH0	Pseudomonas_phage	2.2e-27	58.4
VEF08340.1\|860334_861066_-	cI repressor protein	H2BDH4	Pseudomonas_virus	1.1e-35	35.3
VEF08343.1\|861702_861909_+	Uncharacterised protein	NA	NA	NA	NA
VEF08346.1\|861980_862340_+	Protein of uncharacterised function (DUF3077)	NA	NA	NA	NA
VEF08350.1\|862336_862582_+	Uncharacterised protein	NA	NA	NA	NA
VEF08353.1\|862578_862839_+	Uncharacterised protein	NA	NA	NA	NA
VEF08356.1\|862835_863597_+	prophage antirepressor	A0A067ZIN2	Vibrio_phage	2.4e-28	58.7
VEF08359.1\|863593_863926_+	Uncharacterised protein	A0A2H4J5Q4	uncultured_Caudovirales_phage	2.3e-12	47.1
VEF08362.1\|863922_864147_+	putative phage-like protein	A0A1W6JTF8	Pseudomonas_phage	8.9e-16	69.0
VEF08365.1\|864143_864908_+	Uncharacterised protein	A0A1Y0T0W3	Pseudomonas_phage	4.7e-48	51.5
VEF08368.1\|864888_865692_+	IstB ATP binding domain-containing protein	A0A1W6JTD8	Pseudomonas_phage	5.7e-73	53.9
VEF08370.1\|865688_867065_+	DnaB domain-containing protein	A0A2H4J8N1	uncultured_Caudovirales_phage	2.1e-171	65.6
VEF08372.1\|867061_868426_+\|integrase	integrase family protein	A0A2D1GND4	Pseudomonas_phage	6.9e-103	46.4
VEF08374.1\|868418_868718_+	Uncharacterised protein	A0A1W6JTC1	Pseudomonas_phage	5.1e-19	52.9
VEF08376.1\|868717_869266_+	putative phage-like protein	NA	NA	NA	NA
VEF08379.1\|869377_869656_+	Uncharacterised protein	NA	NA	NA	NA
VEF08381.1\|869750_870215_+	Uncharacterised protein	NA	NA	NA	NA
VEF08383.1\|870282_870654_+	chemotaxis protein	A0A059VK40	Pseudomonas_phage	2.3e-40	74.4
VEF08386.1\|870653_870992_+	putative lipoprotein	A0A059VJW1	Pseudomonas_phage	5.4e-17	56.2
VEF08388.1\|871019_871361_+	phage protein	B5WZZ4	Pseudomonas_phage	2.1e-24	51.4
VEF08390.1\|871508_871994_+	Terminase small subunit	Q3HQS6	Burkholderia_phage	6.2e-22	47.9
VEF08393.1\|872097_873690_+\|terminase	terminase	A0A2H4JDK9	uncultured_Caudovirales_phage	9.5e-221	74.1
VEF08395.1\|873697_874909_+\|portal	HK97 family phage portal protein	A0A2H4JFN7	uncultured_Caudovirales_phage	5.1e-174	74.1
VEF08397.1\|874895_875537_+\|head,protease	HK97 family phage prohead protease	A0A2H4JA51	uncultured_Caudovirales_phage	8.0e-86	75.1
VEF08400.1\|875533_876739_+\|capsid	HK97 family phage major capsid protein	A0A2H4J8D1	uncultured_Caudovirales_phage	4.3e-149	67.7
VEF08403.1\|876796_877015_+	Uncharacterised protein	A0A2H4JG33	uncultured_Caudovirales_phage	5.1e-08	54.1
VEF08405.1\|877015_877324_+	phage protein	A0A2H4J8C5	uncultured_Caudovirales_phage	8.1e-36	75.5
VEF08408.1\|877333_877744_+\|head,tail	Bacteriophage head-tail adaptor	A0A1C9IHR9	Salmonella_phage	1.3e-17	41.3
VEF08411.1\|877736_878258_+	Uncharacterised protein	U5P416	Shigella_phage	2.7e-07	27.4
VEF08414.1\|878278_878869_+	phage protein	B5TK65	Pseudomonas_phage	1.0e-58	56.1
VEF08417.1\|878865_879072_+	phage protein, gp38 family	B5TK66	Pseudomonas_phage	9.3e-20	75.0
VEF08420.1\|879071_880568_+\|tail	Mu-like prophage FluMu tail sheath protein	B5TK67	Pseudomonas_phage	3.3e-231	80.3
VEF08424.1\|880627_880975_+\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	9.5e-41	67.8
VEF08427.1\|880971_881268_+	sigma factor domain protein	B5TK69	Pseudomonas_phage	3.6e-41	89.8
VEF08430.1\|881398_883462_+\|tail	Phage tail tape measure protein TP901, core region	Q8W620	Enterobacteria_phage	2.0e-117	51.2
VEF08433.1\|883458_884715_+	prophage PSPPH01, DNA circulation protein	B5TK71	Pseudomonas_phage	8.9e-105	47.9
VEF08436.1\|884718_885831_+\|tail	phage tail protein	B5TK72	Pseudomonas_phage	1.8e-117	61.5
VEF08439.1\|885827_886337_+\|plate	Phage baseplate assembly protein V	B5TK73	Pseudomonas_phage	5.8e-55	63.6
VEF08441.1\|886333_886732_+	Mu-like phage protein gp46	B5TK74	Pseudomonas_phage	6.6e-46	65.9
VEF08443.1\|886721_887759_+	Mu-like prophage FluMu protein gp47	B5TK75	Pseudomonas_phage	2.3e-138	71.0
VEF08445.1\|887749_888349_+\|tail	tail protein	B5TK76	Pseudomonas_phage	1.7e-85	74.4
VEF08448.1\|888359_889097_+\|tail	tail fiber protein H	B5TK79	Pseudomonas_phage	1.8e-20	62.9
VEF08451.1\|889104_889533_+	putative phage-like protein	NA	NA	NA	NA
VEF08454.1\|889615_890038_+	cell wall hydrolase family protein	A0A2D1GNI1	Pseudomonas_phage	3.4e-61	75.9
VEF08457.1\|890034_890541_+	phage protein	B5TK84	Pseudomonas_phage	1.5e-47	65.0
VEF08460.1\|890534_890819_-	Uncharacterised protein	NA	NA	NA	NA
VEF08462.1\|890766_891096_-	Uncharacterised protein	NA	NA	NA	NA
VEF08465.1\|891204_891435_-	Uncharacterised protein	A0A2H4JA17	uncultured_Caudovirales_phage	3.6e-28	78.4
VEF08468.1\|891700_891898_-	Uncharacterised protein	NA	NA	NA	NA
VEF08471.1\|892079_892289_-	Uncharacterised protein	A0A2D1GNR5	Pseudomonas_phage	2.6e-09	53.7
893238:893263	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1295328 : 1348034

uncultured_Caudovirales_phage(23.33%)

protease,tRNA,integrase,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF09230.1\|1295328_1296681_+\|protease	putative zinc metalloprotease	NA	NA	NA	NA
VEF09232.1\|1296755_1299146_+	outer membrane protein assembly factor YaeT	NA	NA	NA	NA
VEF09234.1\|1299191_1299695_+	outer membrane protein, Skp family	NA	NA	NA	NA
VEF09236.1\|1299698_1300754_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
VEF09238.1\|1300860_1301301_+	(3R)-hydroxymyristoyl-ACP dehydratase	NA	NA	NA	NA
VEF09240.1\|1301297_1302074_+	UDP-N-acetylglucosamine acyltransferase	NA	NA	NA	NA
VEF09242.1\|1302076_1303207_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
VEF09244.1\|1303218_1303845_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	6.3e-27	39.7
VEF09246.1\|1303921_1307443_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	1.5e-197	36.7
VEF09248.1\|1307582_1308530_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
VEF09250.1\|1308638_1309967_+\|tRNA	tRNA(Ile)-lysidine synthase	NA	NA	NA	NA
VEF09252.1\|1310241_1311873_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	9.0e-158	53.1
VEF09254.1\|1311878_1312724_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	7.9e-49	42.4
VEF09256.1\|1312880_1314170_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.1e-137	59.4
VEF09258.1\|1314339_1314618_+	septum formation initiator	NA	NA	NA	NA
VEF09260.1\|1314614_1315322_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD	NA	NA	NA	NA
VEF09262.1\|1315400_1316297_-	HTH-type transcriptional regulator HI	NA	NA	NA	NA
VEF09264.1\|1316413_1317526_+	D-isomer specific 2-hydroxyacid dehydrogenase	E3SJ82	Synechococcus_phage	6.2e-33	29.8
VEF09266.1\|1317629_1318475_+	carbohydrate esterase	NA	NA	NA	NA
VEF09268.1\|1318518_1318992_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
VEF09270.1\|1318988_1320047_+\|tRNA	tRNA pseudouridine synthase D	NA	NA	NA	NA
VEF09272.1\|1320034_1320784_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.2e-66	52.2
VEF09274.1\|1320783_1321461_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.2e-43	49.8
VEF09276.1\|1321672_1322542_+	peptidase M23B	A0A0S2SXL7	Bacillus_phage	5.0e-06	33.3
VEF09278.1\|1322648_1323656_+	RNA polymerase sigma factor	G8CLC7	Synechococcus_phage	5.0e-34	35.8
VEF09280.1\|1324213_1324537_-	ferredoxin	NA	NA	NA	NA
VEF09282.1\|1324700_1327283_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.3e-28	22.6
VEF09284.1\|1327493_1328237_+	phage repressor	B5TK58	Pseudomonas_phage	4.9e-127	91.5
VEF09286.1\|1328764_1329103_+	pyocin R2	B5TK61	Pseudomonas_phage	8.3e-50	83.9
VEF09288.1\|1329172_1329685_+	putative phage-like protein	NA	NA	NA	NA
VEF09290.1\|1329688_1330297_+\|plate	Phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	8.5e-37	57.5
VEF09292.1\|1330311_1330644_+\|plate	phage baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	8.8e-36	67.3
VEF09294.1\|1330640_1331636_+\|plate	baseplate J-like protein	A0A2H4JC04	uncultured_Caudovirales_phage	8.6e-111	65.0
VEF09297.1\|1331632_1332268_+\|tail	Phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	2.6e-44	51.6
VEF09298.1\|1332268_1334701_+\|tail	Phage tail Collar	A0A077K818	Ralstonia_phage	5.0e-88	38.2
VEF09300.1\|1334700_1335117_+	Uncharacterised protein	A0A2H4J880	uncultured_Caudovirales_phage	2.9e-12	55.9
VEF09302.1\|1335218_1335404_+	putative phage-like protein	NA	NA	NA	NA
VEF09303.1\|1335406_1336573_+\|tail	phage tail sheath protein	B0ZSG8	Halomonas_phage	1.4e-125	56.7
VEF09305.1\|1336572_1337079_+\|tail	phage tail tube protein	Q6R4W3	Vibrio_virus	3.1e-24	36.3
VEF09306.1\|1337230_1337812_+	phage-like protein	B0ZSH0	Halomonas_phage	5.5e-25	36.7
VEF09307.1\|1337941_1340134_+\|tail	Phage tail tape measure protein TP901, core region	NA	NA	NA	NA
VEF09308.1\|1340133_1340517_+	Phage protein U-like	A0A2H4JAC8	uncultured_Caudovirales_phage	1.1e-34	54.3
VEF09309.1\|1340509_1340722_+\|tail	Phage tail X	A0A2H4JGD9	uncultured_Caudovirales_phage	2.8e-19	64.3
VEF09311.1\|1340731_1341763_+	Phage protein D-like	B0ZSH3	Halomonas_phage	2.2e-93	50.5
VEF09312.1\|1341937_1342504_+	Pyocin R2_PP, lytic enzyme	B5TK83	Pseudomonas_phage	1.4e-86	82.6
VEF09313.1\|1342482_1343001_+	bacteriophage signal peptide protein	B5TK84	Pseudomonas_phage	1.3e-49	65.9
VEF09314.1\|1343068_1343569_+	CinA-like protein	B5TK85	Pseudomonas_phage	6.3e-70	81.9
VEF09316.1\|1343652_1344708_+	recombinase A	A0A0S2MVG1	Bacillus_phage	7.7e-110	58.2
VEF09317.1\|1344716_1345187_+	recombination regulator RecX	NA	NA	NA	NA
VEF09318.1\|1345230_1345506_-	decarboxylase family protein	NA	NA	NA	NA
VEF09320.1\|1345774_1347091_+\|integrase	putative phage integrase	NA	NA	NA	NA
VEF09322.1\|1347087_1347420_+	Uncharacterised protein	NA	NA	NA	NA
VEF09324.1\|1347419_1348034_+	Uncharacterized phage-encoded protein	K4P9H6	Heliothis_virescens_ascovirus	9.9e-09	27.4

DBSCAN-SWA_3

3681011 : 3690688

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF11685.1\|3681011_3681524_+	methylated-DNA-(protein)-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	4.4e-26	46.3
VEF11686.1\|3681606_3682197_-	nucleoside diphosphate pyrophosphatase	NA	NA	NA	NA
VEF11687.1\|3682336_3682774_-	hemerythrin HHE cation binding protein	NA	NA	NA	NA
VEF11688.1\|3682924_3683350_+	GCN5-like N-acetyltransferase	NA	NA	NA	NA
VEF11689.1\|3683452_3683803_-	lipoprotein	NA	NA	NA	NA
VEF11690.1\|3683936_3684269_+	DNA repair ATPase	NA	NA	NA	NA
VEF11691.1\|3684452_3684845_+	sulfur transfer complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.1e-52	77.5
VEF11692.1\|3684844_3685201_+	sulfur relay protein TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.9e-36	64.2
VEF11693.1\|3685200_3685494_+	DsrH like protein	A0A2H4JG28	uncultured_Caudovirales_phage	4.9e-30	66.7
VEF11694.1\|3685490_3685826_+	sulfite reductase, gamma subunit, putative	A0A2H4J8B6	uncultured_Caudovirales_phage	2.0e-43	76.6
VEF11695.1\|3685822_3686824_+	anthranilate phosphoribosyltransferase like protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.8e-161	83.8
VEF11696.1\|3686915_3687917_+	glutathione S-transferase	NA	NA	NA	NA
VEF11697.1\|3688012_3689407_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
VEF11698.1\|3689407_3690688_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.7e-98	53.9

DBSCAN-SWA_4

5406771 : 5410417

uncultured_Caudovirales_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF13236.1\|5406771_5407167_+	Uncharacterised protein	A0A2H4J161	uncultured_Caudovirales_phage	1.3e-22	44.4
VEF13237.1\|5407224_5407680_+	Uncharacterised protein	A0A2H4J163	uncultured_Caudovirales_phage	2.7e-27	44.4
VEF13238.1\|5407682_5408072_+	Uncharacterised protein	A0A2H4J8C3	uncultured_Caudovirales_phage	1.8e-27	51.6
VEF13239.1\|5408155_5408917_-	Uncharacterised protein	A0A2H4J8S4	uncultured_Caudovirales_phage	6.5e-42	39.9
VEF13240.1\|5409175_5409616_-	Uncharacterised protein	A0A172JI25	Bacillus_phage	5.6e-06	28.7
VEF13241.1\|5409633_5409999_+	Uncharacterised protein	NA	NA	NA	NA
VEF13242.1\|5410297_5410417_+	Uncharacterised protein	A0A2H4J9H6	uncultured_Caudovirales_phage	5.0e-10	92.3

DBSCAN-SWA_5

5427063 : 5439634

uncultured_Caudovirales_phage(91.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF13258.1\|5427063_5429160_-	cadmium translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.4e-147	46.2
VEF13259.1\|5429696_5430341_-	outer membrane protein	NA	NA	NA	NA
VEF13260.1\|5430337_5430778_-	disulfide bond formation protein	NA	NA	NA	NA
VEF13261.1\|5430881_5431289_+	MerR family transcriptional regulator	NA	NA	NA	NA
VEF13262.1\|5431374_5431926_+	phosphinothricin acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	3.0e-89	90.7
VEF13263.1\|5431953_5433027_-	monooxygenase	A0A2H4J2Q2	uncultured_Caudovirales_phage	2.3e-157	96.5
VEF13264.1\|5433064_5433487_-	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	6.9e-70	94.3
VEF13265.1\|5433507_5434221_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.3e-129	97.9
VEF13266.1\|5434268_5434739_-	arsenate reductase	A0A2H4J8A6	uncultured_Caudovirales_phage	1.7e-77	95.5
VEF13267.1\|5434755_5436039_-	arsenite efflux transporter	A0A2H4J144	uncultured_Caudovirales_phage	5.3e-230	99.5
VEF13268.1\|5436063_5436420_-	arsenic resistance transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	9.4e-60	99.1
VEF13269.1\|5436416_5436839_-	ArsR family transcriptional regulator	A0A2H4J437	uncultured_Caudovirales_phage	9.7e-72	95.7
VEF13270.1\|5436929_5437268_-	Uncharacterised protein	NA	NA	NA	NA
VEF13271.1\|5437505_5437874_+	Uncharacterised protein	A0A2H4J9F9	uncultured_Caudovirales_phage	5.7e-60	96.7
VEF13272.1\|5437935_5439105_+	Protein of uncharacterised function (DUF3800)	A0A2H4J132	uncultured_Caudovirales_phage	2.3e-203	93.6
VEF13273.1\|5439097_5439634_+	Uncharacterised protein	A0A2H4J2P5	uncultured_Caudovirales_phage	9.7e-69	95.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134318

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection