CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134319	Pseudomonas stutzeri strain NCTC10450 genome assembly, chromosome: 1	1 crisprs	DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,RT,csa3,DinG,WYL	0	21	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134319_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134319_1

605296-608499

TypeI

I-C

Consensus_repeat	Method
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	PILER-CR
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CRISPRCasFinder
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CRT

48 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of LR134319_1

>merge|LR134319|1|605296-608499|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCACGCGCCCGCGCGGGGCGCGACAGGGCGCAGTAGTCGCGGACGCGCTGCACGTACAGGTTTCAATCCACGCGCCCGCGTGGGGCGGGACGTTTGACCGGGCTGATAGTTGAAGTTAGAGGAAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGAGGTGCCTGCGTCGCGAGTGATGCCGAGGTATACGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGTTTCCAGCTTCTGCTGCACGGTCGGGGTGACGTTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGATGGCGTCGGCGGTGGATGACGGGTGGCTGGAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACAACGGTGCGCACGCCACCGGGCAGCAAACCGATGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGTTGAGCTTGGCCACCTGCTGCAGGTAGCCGTTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACTGGAGCTGATCTGATGGAGAGGATCGACTGGAACGGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGATCCGTTGTAGCCGACGCGAGACGACCAATCCGCTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACAGCCAGCGATGCATGACAGTGGCTTCGAGACGAAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCTGGCTCGACATCGGGCAAGTGGTCCAGTCAGCGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCTGGCTCGACATCGGGCAAGTGGTCCAGTCAGCGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGTATTACGCGGCCGGCATGGGGCTGGGTATAGAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCCCACGGGCGCGATCATCGAGCGAGGTAGCAATGCGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCAGCTGGACGGGCTGTTTGGGATATCCGCCGAGGTTTCAATCCACGCGCCCGCGTGGGGCGCGACTTGAGCAGCCCAGACTCGACCCATGACTGATAGGGTTTCAATCCACGCGCCCGCGTGGGGCGCGACTCGGCCGTCAAGCGAAAACGCCGGGATATGAAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACTTTAGCGCAAGGTCGATGATGCTCATGCCAGCAATGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGAGGAAGAAGGCGAGCGCACGAACGTGTGCGTGAAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACAGGTCTTCTGGTAGTTTTTTCCATGCGCCTTTACGGTTTCAATCCACGCGCCCGCGTGGGGCGCGACAGCTGGTCCCGGTAGAGCCTACCGCCGCGATGCGTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCTTTTCGCATGCTTAGGGGAGGGCGGTTCTAATGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCCGCGATGCGGCAGCAGCACGGGGAGCAGCAGCATGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGCGCATTTGCAGCAGCGCGGGACCGCACCGGCATAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGACCCAATCCGAACTACTCAAGTCCCTGGATGTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCGCTGGCTCCGGTTTCCGGCCTGCTGTACCAGTGGTTTCAATCCACGCGCCCGCGTGGGGCGCGACTGGCGCGATCTCGGTCTTCACGCGCATCAGGTCGTCCGGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGAGGCGAGCGAACGCAAGGCTGAAGTCCGCAAGGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCCGGCTGGACGGCCACAACGCACGGGAGGCGGAAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCGTCCACGTACTGAATTGCCTCTTTTTCATCGAAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCGCTGCGCGCCGCCATGGCTGCGAAGGAGGCGTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCTTCAAGCCGCTCAACGCCGATGGTGCGTGCCAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACTTCCAGTTCCTGCCAGCGATCAACTAGGCGAGCGGTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCGCGGGGGCTTGCTCTACTGCCGCCTGCCCATCCCTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACTTGGCCACAGCGAGCGATCCATCTACAGCGCACTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGCGGCGATCTACAAACTTTTCGGAGGTTGAGCATGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGCGATCCTTTGGGACCAGCTCGAGCGGGGCGGGTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGCCCCAGAGTGATGGCCTTGCGAGCAAGGCGGAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGGCGATACCCTCGGGCACCGCGAACTTGGTGGCGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGGATTCACGAATGGCCGGGCCTGCTGTTGCTCTTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACTTTCCGACCCTGCACATGGATCGTCACCGACGTGGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGGGGCTTCCCATGGCGACTCACCACCGGTGCATTGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCGGGCGTTCCTTCCTGGTGTCGCGTGGCGGGAAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGACGACGCTCAACATAAGGCCAATCTCATTATGCGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGAGGTGCCATGACAAAAGCCCTGCGTATCATGAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACGGGGGTGTAACAGCATGGTGATTACCTCGGTTATGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCGGGGTCCACGCGACGGTGCGACCGTTGGGATACAAGTTTCAATCCACGCGCCCGCGTGGGGCGCGACCTGCTTACGCCAGCGCGCTCGAAACAATGCGCCAGTTTCAATCCACGCGCCCGCGTGGGGCGCGAC

>LR134319|1|1|605296-608499|PILER-CR
GTTTCAATCCACGCGCCCGCGCGGGGCGCGAC	AGGGCGCAGTAGTCGCGGACGCGCTGCACGTACAG
GTTTCAATCCACGCGCCCGCGTGGGGCGGGAC	GTTTGACCGGGCTGATAGTTGAAGTTAGAGGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGTGCCTGCGTCGCGAGTGATGCCGAGGTATAC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GTTTCCAGCTTCTGCTGCACGGTCGGGGTGACGTT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GATGGCGTCGGCGGTGGATGACGGGTGGCTGGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AACGGTGCGCACGCCACCGGGCAGCAAACCGAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GTTGAGCTTGGCCACCTGCTGCAGGTAGCCGTT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TGGAGCTGATCTGATGGAGAGGATCGACTGGAACG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GATCCGTTGTAGCCGACGCGAGACGACCAATCCGCT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AGCCAGCGATGCATGACAGTGGCTTCGAGACGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTGGCTCGACATCGGGCAAGTGGTCCAGTCAGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTGGCTCGACATCGGGCAAGTGGTCCAGTCAGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GTATTACGCGGCCGGCATGGGGCTGGGTATAGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CCCACGGGCGCGATCATCGAGCGAGGTAGCAATGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CAGCTGGACGGGCTGTTTGGGATATCCGCCGAG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTGAGCAGCCCAGACTCGACCCATGACTGATAGG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TCGGCCGTCAAGCGAAAACGCCGGGATATGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTTAGCGCAAGGTCGATGATGCTCATGCCAGCAAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGAAGAAGGCGAGCGCACGAACGTGTGCGTGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AGGTCTTCTGGTAGTTTTTTCCATGCGCCTTTACG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AGCTGGTCCCGGTAGAGCCTACCGCCGCGATGCGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTTTTCGCATGCTTAGGGGAGGGCGGTTCTAAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CCGCGATGCGGCAGCAGCACGGGGAGCAGCAGCAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCGCATTTGCAGCAGCGCGGGACCGCACCGGCATA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GACCCAATCCGAACTACTCAAGTCCCTGGATGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGCTGGCTCCGGTTTCCGGCCTGCTGTACCAGTG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TGGCGCGATCTCGGTCTTCACGCGCATCAGGTCGTCCG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGCGAGCGAACGCAAGGCTGAAGTCCGCAAG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CCGGCTGGACGGCCACAACGCACGGGAGGCGGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGTCCACGTACTGAATTGCCTCTTTTTCATCGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGCTGCGCGCCGCCATGGCTGCGAAGGAGGCGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTTCAAGCCGCTCAACGCCGATGGTGCGTGCCA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTCCAGTTCCTGCCAGCGATCAACTAGGCGAGCGGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGCGGGGGCTTGCTCTACTGCCGCCTGCCCATCCCT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTGGCCACAGCGAGCGATCCATCTACAGCGCACT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCGGCGATCTACAAACTTTTCGGAGGTTGAGCAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCGATCCTTTGGGACCAGCTCGAGCGGGGCGGGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCCCCAGAGTGATGGCCTTGCGAGCAAGGCGGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGCGATACCCTCGGGCACCGCGAACTTGGTGGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGATTCACGAATGGCCGGGCCTGCTGTTGCTCTT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTTCCGACCCTGCACATGGATCGTCACCGACGTG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGGGCTTCCCATGGCGACTCACCACCGGTGCATT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGGGCGTTCCTTCCTGGTGTCGCGTGGCGGGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GACGACGCTCAACATAAGGCCAATCTCATTATGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGTGCCATGACAAAAGCCCTGCGTATCATGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGGGGTGTAACAGCATGGTGATTACCTCGGTTAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGGGGTCCACGCGACGGTGCGACCGTTGGGATACAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTGCTTACGCCAGCGCGCTCGAAACAATGCGCCA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC

>LR134319|1|1|605296-608499|CRISPRCasFinder
GTTTCAATCCACGCGCCCGCGCGGGGCGCGAC	AGGGCGCAGTAGTCGCGGACGCGCTGCACGTACAG
GTTTCAATCCACGCGCCCGCGTGGGGCGGGAC	GTTTGACCGGGCTGATAGTTGAAGTTAGAGGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGTGCCTGCGTCGCGAGTGATGCCGAGGTATAC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GTTTCCAGCTTCTGCTGCACGGTCGGGGTGACGTT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GATGGCGTCGGCGGTGGATGACGGGTGGCTGGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AACGGTGCGCACGCCACCGGGCAGCAAACCGAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GTTGAGCTTGGCCACCTGCTGCAGGTAGCCGTT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TGGAGCTGATCTGATGGAGAGGATCGACTGGAACG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GATCCGTTGTAGCCGACGCGAGACGACCAATCCGCT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AGCCAGCGATGCATGACAGTGGCTTCGAGACGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTGGCTCGACATCGGGCAAGTGGTCCAGTCAGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTGGCTCGACATCGGGCAAGTGGTCCAGTCAGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GTATTACGCGGCCGGCATGGGGCTGGGTATAGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CCCACGGGCGCGATCATCGAGCGAGGTAGCAATGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CAGCTGGACGGGCTGTTTGGGATATCCGCCGAG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTGAGCAGCCCAGACTCGACCCATGACTGATAGG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TCGGCCGTCAAGCGAAAACGCCGGGATATGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTTAGCGCAAGGTCGATGATGCTCATGCCAGCAAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGAAGAAGGCGAGCGCACGAACGTGTGCGTGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AGGTCTTCTGGTAGTTTTTTCCATGCGCCTTTACG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AGCTGGTCCCGGTAGAGCCTACCGCCGCGATGCGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTTTTCGCATGCTTAGGGGAGGGCGGTTCTAAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CCGCGATGCGGCAGCAGCACGGGGAGCAGCAGCAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCGCATTTGCAGCAGCGCGGGACCGCACCGGCATA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GACCCAATCCGAACTACTCAAGTCCCTGGATGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGCTGGCTCCGGTTTCCGGCCTGCTGTACCAGTG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TGGCGCGATCTCGGTCTTCACGCGCATCAGGTCGTCCG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGCGAGCGAACGCAAGGCTGAAGTCCGCAAG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CCGGCTGGACGGCCACAACGCACGGGAGGCGGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGTCCACGTACTGAATTGCCTCTTTTTCATCGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGCTGCGCGCCGCCATGGCTGCGAAGGAGGCGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTTCAAGCCGCTCAACGCCGATGGTGCGTGCCA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTCCAGTTCCTGCCAGCGATCAACTAGGCGAGCGGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGCGGGGGCTTGCTCTACTGCCGCCTGCCCATCCCT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTGGCCACAGCGAGCGATCCATCTACAGCGCACT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCGGCGATCTACAAACTTTTCGGAGGTTGAGCAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCGATCCTTTGGGACCAGCTCGAGCGGGGCGGGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCCCCAGAGTGATGGCCTTGCGAGCAAGGCGGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGCGATACCCTCGGGCACCGCGAACTTGGTGGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGATTCACGAATGGCCGGGCCTGCTGTTGCTCTT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTTCCGACCCTGCACATGGATCGTCACCGACGTG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGGGCTTCCCATGGCGACTCACCACCGGTGCATT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGGGCGTTCCTTCCTGGTGTCGCGTGGCGGGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GACGACGCTCAACATAAGGCCAATCTCATTATGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGTGCCATGACAAAAGCCCTGCGTATCATGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGGGGTGTAACAGCATGGTGATTACCTCGGTTAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGGGGTCCACGCGACGGTGCGACCGTTGGGATACAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTGCTTACGCCAGCGCGCTCGAAACAATGCGCCA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC

>LR134319|1|1|605296-608499|CRT
GTTTCAATCCACGCGCCCGCGCGGGGCGCGAC	AGGGCGCAGTAGTCGCGGACGCGCTGCACGTACAG
GTTTCAATCCACGCGCCCGCGTGGGGCGGGAC	GTTTGACCGGGCTGATAGTTGAAGTTAGAGGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGTGCCTGCGTCGCGAGTGATGCCGAGGTATAC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GTTTCCAGCTTCTGCTGCACGGTCGGGGTGACGTT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GATGGCGTCGGCGGTGGATGACGGGTGGCTGGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AACGGTGCGCACGCCACCGGGCAGCAAACCGAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GTTGAGCTTGGCCACCTGCTGCAGGTAGCCGTT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TGGAGCTGATCTGATGGAGAGGATCGACTGGAACG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GATCCGTTGTAGCCGACGCGAGACGACCAATCCGCT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AGCCAGCGATGCATGACAGTGGCTTCGAGACGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTGGCTCGACATCGGGCAAGTGGTCCAGTCAGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTGGCTCGACATCGGGCAAGTGGTCCAGTCAGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GTATTACGCGGCCGGCATGGGGCTGGGTATAGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CCCACGGGCGCGATCATCGAGCGAGGTAGCAATGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CAGCTGGACGGGCTGTTTGGGATATCCGCCGAG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTGAGCAGCCCAGACTCGACCCATGACTGATAGG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TCGGCCGTCAAGCGAAAACGCCGGGATATGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTTAGCGCAAGGTCGATGATGCTCATGCCAGCAAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGAAGAAGGCGAGCGCACGAACGTGTGCGTGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AGGTCTTCTGGTAGTTTTTTCCATGCGCCTTTACG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	AGCTGGTCCCGGTAGAGCCTACCGCCGCGATGCGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTTTTCGCATGCTTAGGGGAGGGCGGTTCTAAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CCGCGATGCGGCAGCAGCACGGGGAGCAGCAGCAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCGCATTTGCAGCAGCGCGGGACCGCACCGGCATA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GACCCAATCCGAACTACTCAAGTCCCTGGATGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGCTGGCTCCGGTTTCCGGCCTGCTGTACCAGTG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TGGCGCGATCTCGGTCTTCACGCGCATCAGGTCGTCCG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGCGAGCGAACGCAAGGCTGAAGTCCGCAAG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CCGGCTGGACGGCCACAACGCACGGGAGGCGGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGTCCACGTACTGAATTGCCTCTTTTTCATCGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGCTGCGCGCCGCCATGGCTGCGAAGGAGGCGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTTCAAGCCGCTCAACGCCGATGGTGCGTGCCA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTCCAGTTCCTGCCAGCGATCAACTAGGCGAGCGGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGCGGGGGCTTGCTCTACTGCCGCCTGCCCATCCCT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTGGCCACAGCGAGCGATCCATCTACAGCGCACT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCGGCGATCTACAAACTTTTCGGAGGTTGAGCAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCGATCCTTTGGGACCAGCTCGAGCGGGGCGGGT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GCCCCAGAGTGATGGCCTTGCGAGCAAGGCGGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGCGATACCCTCGGGCACCGCGAACTTGGTGGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGATTCACGAATGGCCGGGCCTGCTGTTGCTCTT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	TTTCCGACCCTGCACATGGATCGTCACCGACGTG
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGGGCTTCCCATGGCGACTCACCACCGGTGCATT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGGGCGTTCCTTCCTGGTGTCGCGTGGCGGGAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GACGACGCTCAACATAAGGCCAATCTCATTATGC
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GAGGTGCCATGACAAAAGCCCTGCGTATCATGA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	GGGGGTGTAACAGCATGGTGATTACCTCGGTTAT
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CGGGGTCCACGCGACGGTGCGACCGTTGGGATACAA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC	CTGCTTACGCCAGCGCGCTCGAAACAATGCGCCA
GTTTCAATCCACGCGCCCGCGTGGGGCGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134319.1\|VEF14347.1\|616507_617461_-\|threonine-ammonia-lyase	unknown	unknown	gnl\|CDD\|235699
LR134319.1\|VEF14334.1\|599157_599952_-\|phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
LR134319.1\|VEF14331.1\|596544_597156_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134319.1\|VEF14336.1\|602324_603971_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|183199
LR134319.1\|VEF14349.1\|618962_620435_+\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
LR134319.1\|VEF14346.1\|614116_616354_-\|CRISPR-associated-helicase-Cas3-domain-containing-protein	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
LR134319.1\|VEF14343.1\|610676_611546_-\|CRISPR-associated-Csh2-family-protein	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
LR134319.1\|VEF14342.1\|610024_610657_-\|CRISPR-associated-Cas4-family-protein	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
LR134319.1\|VEF14335.1\|600175_602176_+\|two-component-sensor	unknown	unknown	gnl\|CDD\|377898
LR134319.1\|VEF14348.1\|617538_618948_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
LR134319.1\|VEF14337.1\|604013_604853_-\|voltage-gated-sodium-channel-subunit	unknown	unknown	gnl\|CDD\|366146
LR134319.1\|VEF14333.1\|598501_599143_-\|thiamine-phosphate-pyrophosphorylase	unknown	unknown	gnl\|CDD\|234590
LR134319.1\|VEF14341.1\|608980_610021_-\|CRISPR-associated-Cas1-family-protein	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
LR134319.1\|VEF14345.1\|613326_614001_-\|CRISPR-associated-Cas5d-family-protein	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
LR134319.1\|VEF14328.1\|593334_594342_-\|phosphate-starvation-inducible-protein-PhoH	unknown	unknown	gnl\|CDD\|224616
LR134319.1\|VEF14344.1\|611542_613330_-\|CRISPR-associated-Csd1-family-protein	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
LR134319.1\|VEF14330.1\|595890_596427_-\|Sel1-repeat-containing-protein	unknown	unknown	gnl\|CDD\|276807
LR134319.1\|VEF14329.1\|594473_595787_-\|(dimethylallyl)adenosine-tRNA-methylthiotransferase	unknown	unknown	gnl\|CDD\|237673
LR134319.1\|VEF14332.1\|597164_598448_-\|glutamate-1-semialdehyde-aminotransferase	unknown	unknown	gnl\|CDD\|234607
LR134319.1\|VEF14340.1\|608680_608971_-\|CRISPR-associated-Cas2-family-protein	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
LR134319.1\|VEF14347.1\|616507_617461_-\|threonine-ammonia-lyase	gnl\|CDD\|235699	PRK06110, PRK06110, threonine dehydratase.	0
LR134319.1\|VEF14334.1\|599157_599952_-\|phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	8.63854e-114
LR134319.1\|VEF14330.1\|595890_596427_-\|Sel1-repeat-containing-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.72414e-20
LR134319.1\|VEF14336.1\|602324_603971_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|183199	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.	4.42121e-168
LR134319.1\|VEF14349.1\|618962_620435_+\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
LR134319.1\|VEF14346.1\|614116_616354_-\|CRISPR-associated-helicase-Cas3-domain-containing-protein	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.66151e-56
LR134319.1\|VEF14343.1\|610676_611546_-\|CRISPR-associated-Csh2-family-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.63237e-159
LR134319.1\|VEF14342.1\|610024_610657_-\|CRISPR-associated-Cas4-family-protein	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	9.62544e-42
LR134319.1\|VEF14335.1\|600175_602176_+\|two-component-sensor	gnl\|CDD\|377898	pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling. This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules).	1.12722e-59
LR134319.1\|VEF14348.1\|617538_618948_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	8.35821e-87
LR134319.1\|VEF14337.1\|604013_604853_-\|voltage-gated-sodium-channel-subunit	gnl\|CDD\|366146	pfam00520, Ion_trans, Ion transport protein. This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.	2.02073e-29
LR134319.1\|VEF14333.1\|598501_599143_-\|thiamine-phosphate-pyrophosphorylase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	1.30494e-77
LR134319.1\|VEF14341.1\|608980_610021_-\|CRISPR-associated-Cas1-family-protein	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
LR134319.1\|VEF14345.1\|613326_614001_-\|CRISPR-associated-Cas5d-family-protein	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	4.49619e-120
LR134319.1\|VEF14328.1\|593334_594342_-\|phosphate-starvation-inducible-protein-PhoH	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	1.76664e-155
LR134319.1\|VEF14344.1\|611542_613330_-\|CRISPR-associated-Csd1-family-protein	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
LR134319.1\|VEF14329.1\|594473_595787_-\|(dimethylallyl)adenosine-tRNA-methylthiotransferase	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
LR134319.1\|VEF14332.1\|597164_598448_-\|glutamate-1-semialdehyde-aminotransferase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
LR134319.1\|VEF14340.1\|608680_608971_-\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.251e-34

>LR134319.1|VEF14337.1|604013_604853_-|voltage-gated-sodium-channel-subunit
MQVAHPETSRSRLGQFIERPAFQRGILLLIVINAAILGMQTSAALVARWGEALVLLDSLILAVFVAEIAARIYVHRAAFFRDPWSLFDFSVVAIALVPASGPFSILRALRVLRVMRMVTMVPSMRRVVGALLSAIPGLGSIAMVLALVFYVSAVIATGLFAADFPEWFGSLGRSVYTLFQVMTLESWSMGIVRPVMEIFPYAWVFFIPFILIATFTMLNLFIAIIVNAMQTVTDADREATQASIEAAREHIETDLHDEVRALRGEIAELKELLRQQPRP
>LR134319.1|VEF14336.1|602324_603971_+|acyl-CoA-dehydrogenase
MIPQTCAETHEVINQVPPLEGANLYRLDLPLQQWTQRYHAGWAQGRLDVYGALAGGPLMQAGFLANENRPVFKSHDRYGHRIDLVEFHPAYHELMRTAVEHGIPSLPWTDPQPGAQVARAALMYLHNQAEAGSSCPLTMTYASVPALRLQPDLAERWLPRILAREYDPRNVPMEQKAGVTIGMAMTEKQGGTDVRANTTRAFAVGAGGPGQAYELIGHKWFCSAPMCDAFLTLAQTDKGLSCFLLPRHRPDGTRNAFYIQRLKNKLGNWANASSEVEYRGALAWMVGEEGRGVPTIIEMVASTRFDCMIGSSSLMRQALTQAMHHCAHRRVGGRALLDQPLMQNVLADLALESEAALALTLRMGRAQDHRRDEHEDKFARVVTAIGKYWICKRAPTMIAEASECLGGAGYVEETILPRLYREAPVNSIWEGSGNVQCLDVLRALSKEPGVLEVLFAELGDGHGDARLKVHIQRLKAAFGDTEDIQYRARQLTEEVAVALQAKLLLEAGDAAVSDAFIASRLDGHGRVHGTLPRGLDIAALLARSAPHL
>LR134319.1|VEF14335.1|600175_602176_+|two-component-sensor
MRYVFLFFLAVLPALAAAVELDEHTRHLPLGQMMEVFEDPRGEIGIEDIASPAFESHFQRNRTPVFNAGYSRSVHWVRIDLSYRPQIAQGARRWLLEVAYPPLDSLQLYLSDGQGGYRLARDTGDTRPWASREIRQGNYLFELELQPEQPQRVYLRVESEGSIQVPLSLWSQHAYLEAQPGRIYVLGMIYGVLLAMLVYNLFIYISIRDQSYLFYILYIAAFGLYQVSVNGAGVQFLWPDRPWWANAATPLLIGATGLFGCLFTRSFLRTAEHSRWMDRLLRLIIGFSVVVMVLALTTDYGLSLRLATALALLFTLAVFAAGILAWLRGMRVARYFIIAWSALLVGGQINTLMVLGHLPHNFLTMYASQLGAALEVVLLSMALADRINALKDERAKILENARSDLEQLNRELAESNRLKDEFLSNISHELRTPMMGVMGALELLPASETPEELQQYQHIATGSARDMMRLVNNILVLSELRAGKLRLQAQRFSLRDTAVRLEQQFGPQARAKGLAFDLEFDGKLPDRVYGDGEKFEQSICHLLDNAVKFTSRGAVTLRFGGAVEQRQVQLEVEVIDSGIGFSDADQAYLYHQFRQVDGSMTRRYGGLGIGLAISRGLIEVFGGQLSQQSRPGLGSRFCIRVRFPLHGPEQMPASQPNGNPPSAPIA
>LR134319.1|VEF14334.1|599157_599952_-|phosphomethylpyrimidine-kinase
MKNFTSRPVVLCLSGHDPSGGAGLQADIEALLAQACHAAPTVTALTVQDTVNVSDFRVLDREWVLAQANAVIADLPIAAVKLGMLGSVEMVETVLEIMARLPGVPLVCDPVLRAGGGGALGKEDVGYAMRERLFPVSTIATPNLPEARILAELPEGSADECAERLLPHIGHLLITGGHGDESEVHNRLYCREGSRHDFTCARLPGSYHGSGCTLASTLAGRLALGEELTSAVRSALDYTWRTLRDAEAPGHGQYVPRRLPLDLA
>LR134319.1|VEF14333.1|598501_599143_-|thiamine-phosphate-pyrophosphorylase
MKESSRLRGLYAITDSKLLADGRLLPYVEAALKGGARLLQYRDKTSDEARRLREADALQELCARHGAQLIINDDAELAARLGVGLHLGQEDGSLAAARALLGRQAIIGATCHAQLPLAEQAARDGASYVAFGRFFQSHTKPGAPAANHELLREARARIGLPIVAIGGITLDTAPSLIAEGVQMIAVIHALFAADSAAEVERRTQAFSQLFNTP
>LR134319.1|VEF14332.1|597164_598448_-|glutamate-1-semialdehyde-aminotransferase
MSRSETLFASAQTHIPGGVNSPVRAFRSVGGTPLFLKHAEGAYVIDEDDKRYVDYVGSWGPMILGHSHPQVLDAVRRQLEHGLSYGAPTAMETEMAELVCRLVPSMEMVRMVSSGTEATMSAIRLARGYTGRDAIIKFEGCYHGHSDSLLVKAGSGALTQGVPSSAGVPADFAKHTLTLAYNDLAEVEATLKEKGEQVACIIVEPVAGNMNCVPPAPGFLEGLRRLCDAHGVVLIFDEVMTGFRVALGGAQAYYGVTPDLSTFGKIIGGGMPVGCFGGKRAIMERIAPLGPVYQAGTLSGNPLAMAAGLTTLELISRPGFHDELGAYTSRMLQGLQDRADAAGIPFVTTQVGGMFGLYFSGADDIVTFADVMASDADRFKRFFHLMLEGGVYLAPSAFEAGFTSIAHGDKELAITLDAAERAFAKLK
>LR134319.1|VEF14331.1|596544_597156_-|Uncharacterised-protein
MELLQSLLLTLAAAASAIQIGRARRRYGEADQPALFSAMLAFILAAASGATGLAGGLAEAQQWLERATLLLGLPLLALAALTLARRWAWSRPNWGRVVLGLCVFFELARQLGWSEPYALGLLLASALLVIYAAVLQWPDRLPSGAGVAAGVLLLLMLPIPSGSAIDNPLAGAEPLLLAIASPLLALLLLRLPGSTGEQQPTAT
>LR134319.1|VEF14330.1|595890_596427_-|Sel1-repeat-containing-protein
MIRTGRILSLGCLLLLSPLTALAGGNTLLIPATARCALNTLPEELPEALRSCQQAASEGDVQAAYELGEFHYDGRRAPRDLAKALYWFEQASLRGHAAAQHRLGVMFFRGEGVKANNVQAYIVLKMAAVNGEDEALDTADRVSAQMRRDELEIATQVLGQIFRDYLMQLQAADAPLIP
>LR134319.1|VEF14329.1|594473_595787_-|(dimethylallyl)adenosine-tRNA-methylthiotransferase
MTRKLFIETHGCQMNEYDSSRMVDLLGEHQAMEITENPAEADVILLNTCSIREKAQEKVFSQLGRWRELKQDNPQLVIGVGGCVASQEGAAIRDRAPYVDVVFGPQTLHRLPEMIDAARTTRTPQVDISFPEIEKFDRLPEPRVDGPSAYVSVMEGCSKYCTFCVVPYTRGEEVSRPLADVLAEIVHLAENGVKEVTLLGQNVNGYRHDGHDFADLLHAVAAIDGIGRIRYTTSHPLEFSDAIIQAHADIPQLVKYLHLPVQAGSDRILAAMKRNHTALEYKSRIRRLKAAVPDILISSDFIVGFPGETDKDFEQTMKLIEDVGFDFSYSFVYSARPGTPAADLADDTPEEVKKQRLAILQQRINQQGFENSRRMVGTTQRILVSDYSKKDPGMLQGRTEHNRIVNFRCDNPRLIGQFVDVHIDDALPHSLRGSLLS
>LR134319.1|VEF14328.1|593334_594342_-|phosphate-starvation-inducible-protein-PhoH
MNAPIEPHRFTLEPFEARRFANLCGQFDEHLRLIEQRLELEIRNRGNQFELVGPSNVAKSAENLLRRLYRETKTTELSPDMVHLYLQESGMEELANPNAQQGVALRTKKGMIRPRGANQQRYVKAILDNDINFGVGPAGTGKTYLAVACAVDALEREQVRRILLVRPAVEAGEKLGFLPGDLAQKIDPYLRPLYDALYEMLGFEYVARLIEKQVIEIAPLAYMRGRTLNNSFIILDESQNTTQEQMKMFLTRIGFGSTAVITGDITQVDLPRGTKSGLAHVIEVLKDVNGISFTHFKPKDVVRHPLVQRIVEAYESFEDRQSPASKRAAQDAAGD
>LR134319.1|VEF14340.1|608680_608971_-|CRISPR-associated-Cas2-family-protein
MMVLVSYDVSTQEAGGDKRLRRLSKACRDFGQRVQYSVFEIEVDAAQWTLLKQRLCDLIDPEQDSLRFYYLGSNWQARVEHVGAKPVLDLNGPLIL
>LR134319.1|VEF14341.1|608980_610021_-|CRISPR-associated-Cas1-family-protein
MRRQLNTLYVTTEGAWLRKDGANIVMEVEGQVRGRLPAHMLESLVCIGRILVSPPLLGYCSEQGISVCYLTPNGKFLARVEGPVSGNVLLRREQYRRSDDPQGCAAIVRNLLIGKIHNQRAVISRGLRDHGEAVTEEARNNLVHACKRLRRILHKLEEVPTTDVMRGLEGEAAQAYFSVFNHLLRAGNPALSFKGRSRRPPLDAVNALLSFLYTLLTHDCRSALETTGLDPAVGFLHRDRPGRPSLALDLVEEFRPLLADRLALSLINRRQLNERDFRTLDNGAVLLKEDARKVVLTAYQDRKREELRHAFLEEKAPIGLFPAIQAQLLARHLRGDLVAYPPFLWK
>LR134319.1|VEF14342.1|610024_610657_-|CRISPR-associated-Cas4-family-protein
MDDDNLIPISALQHYLYCPRQCALIHVEQLWAENRQTAEGRLLHQRADRPQVEQRHGVRTVTAMPLVNMALGITGIADVVEFHEGSEGEFAFPVEYKRGRPKAHRADEVQLCAQALCLEAMLGRPLKEGALFYGQTRRRIQVTFDADLRQLTRDIICATRSMIDSGRTPLAEYQAKRCDACSLLELCQPHLLKHSHDVQMWLHQQIREDN
>LR134319.1|VEF14343.1|610676_611546_-|CRISPR-associated-Csh2-family-protein
MSVIANRYEFVYLFDVTNGNPNGDPDAGNLPRLDPETNQGLVTDVCLKRKLRNYVALEQEGAPGYAIYMQEKSVLNNQHKQAYEALGIESEAKKLPKDEAKARELTGWMCKNFFDVRAFGAVMTTEVNAGQVRGPIQLAFATSIDPVLPMEISITRMAVTNEKDLEKERTMGRKHIVPYGLYRAHGFVSAKLAERTGFSEEDLGLLWRALINMFEHDRSAARGEMAARKLIVFKHEHPMGNAPAHVLFDSVQIERVEGEAHTPARCFKDYRVSVNAEALPQGVSVMELL
>LR134319.1|VEF14344.1|611542_613330_-|CRISPR-associated-Csd1-family-protein
MILSALNDYYQRLLEQGADGVSPFGYSQEKISYEILLSQDGEVVDVNDIRQMAGKKPIPRSLSVPQPEKRTSGTKSNFLWDKTSYVLGVSSKDGGRTALEHAAFKELHLQALADEDDAGLQSLTKFLEQWEPQKFRPPTFSEEMLDTNVVFRLDGQQQYLHESPAAQTVRAKLLASGDSRHGRCLVTGQQQPLARLHPAVKGVNGAQSSGASIVSFNLDAFTSYGKSQGENAPISEQVAFAYTTVLNHLLRRDEHNRQRLQIGDASVVFWAQSADTQQSMQAETTFWSMLEPPSDDGQEAEKLRNVLSAVAQGRPLRELDPQLEGGTRLFVLGLAPNASRLSIRLWESGDLESFARRLGEHFLDLHIEPLPWKTAPAIWRLLYATAPSRDGKAKAEDVPAHLAGEMARAILTGRRYPQSLLATLTMRMRADGDISGVRVALCKAVIAREARLGGNKTNPEELPMSLDKEAANPGYRLGRLFAVLEGAQRLALGDKVNATIRDRYYGAASATPATVFPMLLRNTQNHLAKLRKDKPGLAVNLERDIAEIIGGLQSQFPRSLRLEDQGRFAIGYYHQSQARFTRTPDPENLEQGAPA
>LR134319.1|VEF14345.1|613326_614001_-|CRISPR-associated-Cas5d-family-protein
MAYGIRLKVWGERACFTRPEMKVERVSYDVITPSAARGVLEAIHWKPAIRWVVDRLHVLKPIRFESLRRNEVGGKLSAASVGRAMKAGRTEDLISLIEDDRQQRATTLLRDVAYVIEAHFELTEKAGADDSIGKHLDIFNRRARKGQYFHAPCLGVREFPASFQLLEADQELPSTDASLLGEHDLGWVLHDIDFANDMTPHFFRARMNSGVIDVPPFQGEGSKA
>LR134319.1|VEF14346.1|614116_616354_-|CRISPR-associated-helicase-Cas3-domain-containing-protein
MDDHTRAFYAHSTPNPDKSDWQPLREHLEAVAEIAARNASAFSGDTLAHLAGLLHDLGKYTDEFQQRVTGDAIRVDHATRGAIIAVERYGTLGHLVAYAIAGHHAGLANGSEGIERTALKERLLGTGLPALLAQWQTEIQLPALNELKPPALIQREGRNFFQLAFLGRMIFSCLVDADYLDTEAFYDRTQGRSSLRDHAYPNLANLRQQLDKHLNGFEANTPVNQLRGEILAGVRSKAGLPPGLFSLTVPTGGGKTLASLAFALDHALAHGLRRVIYVIPFTSIVEQNAAVFRRALGELGEKAVVEHHSAFADDRGKSLEARKKLSLAMENWDAPIIVTTAVQFFESLFADRPARCRKLHNIARSVVILDEAQTLPLHLLRPTVAAIDELALNYNSSLVLCTATQPALTDGPRFPGGLPNVRELAPEPEHLFQQLQRVQIRSIGPISDEALSGQLREREQVLCIVNNRRHARALYETIADCPGACHLTTLMYAKHRSQVLTEVRQRLRDGYPCRLVATSLIEAGVDVDFPTVLRAEAGLDSIAQAAGRCNREGRRALADSQVLVFAPDNEQWSPPHELKQFAQAAREVMRQHPDDCLSMAAIERYFHLLYWQKGSRALDERNLLGLIEKGRLDGLPFETLAREFRMIDSIQMPVIIARDDEAQAALDDLAFADGCAGIARRLQPYLVQLPRKAYDALLHVGAVQPAMAERYGEQFMVLVNPDLYHDQFGLRWDNPAFVSSERLLW
>LR134319.1|VEF14347.1|616507_617461_-|threonine-ammonia-lyase
MFDLTALRQAAELIGRHVPPTPQYNWPLLSQRLGCEVWVKHENHTPAGAFKVRGGLLYVHELLRREPRLPGMISATRGNHGISLAMAARQAGVPLKVLVPQGNSTEKNAAMRACGAEVIEHGEDFDTARPQAAELARQSGWHFVPALHPDLIRGVATYALELFEAAPPLRRVYVPIGMGSGICGLIRVRDLLGLDCEIVGVVSSTADAYAQSFEQGRIVCTETADTFADGMACRMPAAEALEMIAEGAARIVRVDDGEIRQAIVALHEDTHNTAEGAGAAALAAAIQERALNTGERVAVVLSGANIDRRVLAGILAS
>LR134319.1|VEF14348.1|617538_618948_+|GntR-family-transcriptional-regulator
MWLPKLSDNDQPRYLALVDAISVAIERGELKPGDRLPPQRRLAWALGLNPSTAMQAYREAARRHLVGGEVGRGTFVLASSREASLFLLKQPEAAPARLDLSTNLPMLDADDRDLHRSLAALGASSELALLQGYPSASALQRGRVAVSRWLQRRGLELPPGQILLCAGAQQGVFAAMLGLCAPGEPVLVEALTSPGIKAAARQLRLPLHGVALDQHGIVPEAFDRQARATGARVAVLTPCLQNPTGVSMDRERREAIAELARRHDLLIIEDDVYGALGDEPPLATLLGERSVLVGSLSKTVAPGLRFGFIATPGSWLGRIDPEAQATGWALSPLCLRLASEWIEDGTALRRLAWQRRQIERRWKMARKLLGPRVTGHASPHLWLTATDGEVGLAGIAHAASIECAAAQVFAVGPDAPDALRLSLSAAPGLVPLQQALQALAEGLGVRRATDEVSAALSLSSMSRQDVSND
>LR134319.1|VEF14349.1|618962_620435_+|AMP-nucleosidase
MNPAGDTFRIATSAEAAVDYLAELHARATTALNQALKRYVTSRAEPSLQERSLFRYPQLRLTYECHGEVPASTRAYAKVQAPGVYSVTVTHPAAFRAYLLDQLKPLIQDFNVTVEVGLSDRNIPYPYVIEQGDELAGTGVTAAELARVFPSTDLSAATDDIADGLYDWEHADPYPLALFDGARVDFSLRRLVHYTGSDWRHVQPWILLTNYHRYVDQFIRHGLDMLRDDTRFTRMVLPGNVIIERGMEEGEAQAIIGGVLWHRYQMPAYHLIAEDGHGITLVNIGVGPSNAKNITDHLAVLRPHCWLMIGHCGGLRQSQSIGDYVLAHAYMRRDGILDRVLPPHIPLPALAEVQQALQDAAARITGEQGEALKKRLRTGTVLTYDDRNWELRWAQERPLINLSRAVAVDMESGTIAAQGYRLRVPYGTLLCVSDKPLHSEIKLPGSANAFYERAVTQHLKIGIAALDLLRSQLNSLHSRKLRSFDEPPFR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134319_1	1.34\|607510\|36\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607510-607545	36	AP014684	Pseudomonas phage PS-1 DNA, complete sequence	3492-3527	1	0.972
LR134319_1	1.7\|605724\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605724-605756	33	MF417932	Uncultured Caudovirales phage clone 3S_12, partial genome	4309-4341	2	0.939
LR134319_1	1.33\|607442\|36\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607442-607477	36	JF314845	Cronobacter phage ES2, complete genome	5813-5848	2	0.944
LR134319_1	1.6\|605659\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605659-605691	33	NC_021278	Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence	63473-63505	6	0.818
LR134319_1	1.23\|606780\|35\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	606780-606814	35	NZ_CP019938	Ketogulonicigenium robustum strain SPU_B003 plasmid unnamed1, complete sequence	31419-31453	6	0.829
LR134319_1	1.31\|607312\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607312-607344	33	MT491207	Pseudomonas phage vB_PaeM_USP_18, complete genome	1629-1661	6	0.818
LR134319_1	1.31\|607312\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607312-607344	33	MT491208	Pseudomonas phage vB_PaeM_USP_25, complete genome	1589-1621	6	0.818
LR134319_1	1.7\|605724\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605724-605756	33	MK903282	Escherichia phage Mansfield, complete genome	36380-36412	7	0.788
LR134319_1	1.3\|605460\|35\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605460-605494	35	NZ_CP018385	Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence	137774-137808	8	0.771
LR134319_1	1.4\|605527\|35\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605527-605561	35	GU911303	Burkholderia phage KS5, complete genome	30725-30759	8	0.771
LR134319_1	1.5\|605594\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605594-605626	33	NZ_CP013577	Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence	123612-123644	8	0.758
LR134319_1	1.5\|605594\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605594-605626	33	NZ_CP013549	Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence	123982-124014	8	0.758
LR134319_1	1.5\|605594\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605594-605626	33	NZ_CP013534	Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence	123982-124014	8	0.758
LR134319_1	1.5\|605594\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605594-605626	33	NZ_CP013545	Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence	123976-124008	8	0.758
LR134319_1	1.5\|605594\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605594-605626	33	NZ_CP013571	Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence	123612-123644	8	0.758
LR134319_1	1.6\|605659\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605659-605691	33	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	854752-854784	8	0.758
LR134319_1	1.6\|605659\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605659-605691	33	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1139473-1139505	8	0.758
LR134319_1	1.26\|606979\|34\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	606979-607012	34	NZ_CP024312	Rhizobium sp. NXC24 plasmid pRspNXC24a, complete sequence	24256-24289	8	0.765
LR134319_1	1.28\|607115\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607115-607147	33	NZ_CP008844	Klebsiella michiganensis strain M1 plasmid pKOXM1C, complete sequence	8731-8763	8	0.758
LR134319_1	1.28\|607115\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607115-607147	33	NZ_CP045018	Klebsiella pneumoniae subsp. pneumoniae strain BK13048 plasmid pBK13048-3, complete sequence	26630-26662	8	0.758
LR134319_1	1.28\|607115\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607115-607147	33	CP052354	Klebsiella pneumoniae strain D16KP0146 plasmid unnamed	8790-8822	8	0.758
LR134319_1	1.28\|607115\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607115-607147	33	CP052395	Klebsiella pneumoniae strain C17KP0040 plasmid unnamed	8795-8827	8	0.758
LR134319_1	1.28\|607115\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607115-607147	33	NZ_CP033624	Klebsiella pneumoniae strain 4743 plasmid unnamed6	45162-45194	8	0.758
LR134319_1	1.28\|607115\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607115-607147	33	NZ_CP015504	Klebsiella pneumoniae strain SKGH01 plasmid unnamed 4, complete sequence	47756-47788	8	0.758
LR134319_1	1.28\|607115\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607115-607147	33	NZ_CP009878	Klebsiella pneumoniae subsp. pneumoniae strain KPNIH31 plasmid pKPN-852, complete sequence	42910-42942	8	0.758
LR134319_1	1.29\|607180\|34\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607180-607213	34	NZ_CP014142	Thermus parvatiensis strain RL plasmid pTP143, complete sequence	48787-48820	8	0.765
LR134319_1	1.29\|607180\|34\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607180-607213	34	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	131398-131431	8	0.765
LR134319_1	1.39\|607841\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607841-607873	33	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	249051-249083	8	0.758
LR134319_1	1.4\|605527\|35\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605527-605561	35	AB452989	Serratia phage KSP20 orf7 to orf11 genes for scaffolding protein, major capsid protein, terminase, head completion protein, hypothetical protein, complete and partial cds	1832-1866	9	0.743
LR134319_1	1.7\|605724\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605724-605756	33	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	214494-214526	9	0.727
LR134319_1	1.7\|605724\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605724-605756	33	NZ_CP016313	Thermus brockianus strain GE-1 plasmid pTB1, complete sequence	312314-312346	9	0.727
LR134319_1	1.7\|605724\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605724-605756	33	NZ_CP033429	Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence	128439-128471	9	0.727
LR134319_1	1.7\|605724\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	605724-605756	33	MN694568	Marine virus AFVG_250M879, complete genome	15063-15095	9	0.727
LR134319_1	1.17\|606383\|32\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	606383-606414	32	NZ_CP026546	Cupriavidus metallidurans strain Ni-2 plasmid unnamed2	40561-40592	9	0.719
LR134319_1	1.23\|606780\|35\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	606780-606814	35	NC_008712	Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence	211801-211835	9	0.743
LR134319_1	1.32\|607377\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607377-607409	33	NZ_LN890657	Candidatus Promineofilum breve strain Cfx-K plasmid III, complete sequence	30725-30757	9	0.727
LR134319_1	1.45\|608235\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	608235-608267	33	NZ_AP017296	Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence	310607-310639	9	0.727
LR134319_1	1.22\|606715\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	606715-606747	33	NZ_AP022377	Providencia stuartii strain BML2537 plasmid pBML2537, complete sequence	105660-105692	10	0.697
LR134319_1	1.22\|606715\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	606715-606747	33	NC_009139	Yersinia ruckeri YR71 plasmid pYR1, complete sequence	116754-116786	10	0.697
LR134319_1	1.22\|606715\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	606715-606747	33	KY014464	Vibrio parahaemolyticus plasmid pVPS129, complete sequence	128308-128340	10	0.697
LR134319_1	1.22\|606715\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	606715-606747	33	NZ_CP053192	Enterobacter hormaechei strain EGYMCRVIM plasmid pMS-37b, complete sequence	102666-102698	10	0.697
LR134319_1	1.24\|606847\|35\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	606847-606881	35	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	47892-47926	10	0.714
LR134319_1	1.40\|607906\|34\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607906-607939	34	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	910049-910082	10	0.706
LR134319_1	1.41\|607972\|34\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607972-608005	34	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	481572-481605	10	0.706
LR134319_1	1.43\|608104\|33\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	608104-608136	33	NZ_CP035380	Leclercia adecarboxylata strain R25 plasmid pLA-109, complete sequence	41257-41289	10	0.697
LR134319_1	1.40\|607906\|34\|LR134319\|PILER-CR,CRISPRCasFinder,CRT	607906-607939	34	NZ_CP013635	Rhizobium sp. N324 plasmid pRspN324e, complete sequence	495063-495096	11	0.676

1. spacer 1.34|607510|36|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to AP014684 (Pseudomonas phage PS-1 DNA, complete sequence) position: , mismatch: 1, identity: 0.972

cgcgggggcttgctctactgccgcctgcccatccct	CRISPR spacer
cgccggggcttgctctactgccgcctgcccatccct	Protospacer
*** ********************************

2. spacer 1.7|605724|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to MF417932 (Uncultured Caudovirales phage clone 3S_12, partial genome) position: , mismatch: 2, identity: 0.939

gttgagcttggccacctgctgcaggtagccgtt	CRISPR spacer
gttgagcttggcgacctgctccaggtagccgtt	Protospacer
************ ******* ************

3. spacer 1.33|607442|36|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to JF314845 (Cronobacter phage ES2, complete genome) position: , mismatch: 2, identity: 0.944

ttccagttcctgccagcgatcaactaggcgagcggt	CRISPR spacer
ttcaagttcctgccagcgatcaaccaggcgagcggt	Protospacer
*** ********************.***********

4. spacer 1.6|605659|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NC_021278 (Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.818

aacggtgcgcacgccaccgggcagcaaaccgat-	CRISPR spacer
cgcggtgtgcaccccaccgggcagc-aacggatg	Protospacer
 .*****.**** ************ *** ***

5. spacer 1.23|606780|35|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019938 (Ketogulonicigenium robustum strain SPU_B003 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.829

-ccgcgatgcggcagcagcacggggagcagcagcat	CRISPR spacer
gccgc-ttgcggcagcagcacgcggcgcagcaccgt	Protospacer
 ****  *************** ** ****** *.*

6. spacer 1.31|607312|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to MT491207 (Pseudomonas phage vB_PaeM_USP_18, complete genome) position: , mismatch: 6, identity: 0.818

cgctgcgcgccgccatggctgcgaaggaggcgt	CRISPR spacer
agtaccgcgctgccatggctgcgaaggaggcga	Protospacer
 *.  *****.*********************

7. spacer 1.31|607312|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to MT491208 (Pseudomonas phage vB_PaeM_USP_25, complete genome) position: , mismatch: 6, identity: 0.818

cgctgcgcgccgccatggctgcgaaggaggcgt	CRISPR spacer
agtaccgcgctgccatggctgcgaaggaggcga	Protospacer
 *.  *****.*********************

8. spacer 1.7|605724|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to MK903282 (Escherichia phage Mansfield, complete genome) position: , mismatch: 7, identity: 0.788

gttgagcttggccacctgctgcaggtagccgtt	CRISPR spacer
ggtattcatggccaccttctgcgggtagccgtt	Protospacer
* *.  * ********* ****.**********

9. spacer 1.3|605460|35|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018385 (Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.771

gaggtgcctgcgtcgcgagtgatgccgaggtatac	CRISPR spacer
gcgtcgcgggcgtcgcgagtgatgcccaggtgtat	Protospacer
* * .**  ***************** ****.**.

10. spacer 1.4|605527|35|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to GU911303 (Burkholderia phage KS5, complete genome) position: , mismatch: 8, identity: 0.771

gtttccagcttctgctgcacggtcggggtgacgtt	CRISPR spacer
gtttcgagcgtctgctgcacggtcggatcgaccga	Protospacer
***** *** ****************. .***

11. spacer 1.5|605594|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013577 (Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence) position: , mismatch: 8, identity: 0.758

gatggcgtcggcggtggatgacgggtggctgga	CRISPR spacer
gatggcgtcggcggtggttcacggcgatcttaa	Protospacer
***************** * ****  . ** .*

12. spacer 1.5|605594|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013549 (Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence) position: , mismatch: 8, identity: 0.758

gatggcgtcggcggtggatgacgggtggctgga	CRISPR spacer
gatggcgtcggcggtggttcacggcgatcttaa	Protospacer
***************** * ****  . ** .*

13. spacer 1.5|605594|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013534 (Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence) position: , mismatch: 8, identity: 0.758

gatggcgtcggcggtggatgacgggtggctgga	CRISPR spacer
gatggcgtcggcggtggttcacggcgatcttaa	Protospacer
***************** * ****  . ** .*

14. spacer 1.5|605594|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013545 (Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence) position: , mismatch: 8, identity: 0.758

gatggcgtcggcggtggatgacgggtggctgga	CRISPR spacer
gatggcgtcggcggtggttcacggcgatcttaa	Protospacer
***************** * ****  . ** .*

15. spacer 1.5|605594|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013571 (Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence) position: , mismatch: 8, identity: 0.758

gatggcgtcggcggtggatgacgggtggctgga	CRISPR spacer
gatggcgtcggcggtggttcacggcgatcttaa	Protospacer
***************** * ****  . ** .*

16. spacer 1.6|605659|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 8, identity: 0.758

aacggtgcgcacgccaccgggcagcaaaccgat	CRISPR spacer
gacggtgcgcacgccagccggcagcgaccactt	Protospacer
.*************** * ******.* *   *

17. spacer 1.6|605659|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 8, identity: 0.758

aacggtgcgcacgccaccgggcagcaaaccgat	CRISPR spacer
gacggtgcgcacgccagccggcagcgaccactt	Protospacer
.*************** * ******.* *   *

18. spacer 1.26|606979|34|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024312 (Rhizobium sp. NXC24 plasmid pRspNXC24a, complete sequence) position: , mismatch: 8, identity: 0.765

cgctggctccggtttccggcctgctgtaccagtg	CRISPR spacer
cgttggctccggtttccggccagccgcccccgca	Protospacer
**.****************** **.*. ** *..

19. spacer 1.28|607115|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008844 (Klebsiella michiganensis strain M1 plasmid pKOXM1C, complete sequence) position: , mismatch: 8, identity: 0.758

gaggcgagcgaacgcaaggctgaagtccgcaag	CRISPR spacer
gcgcgtattgaacgccaggctgaagcccgcaag	Protospacer
* *   * .****** *********.*******

20. spacer 1.28|607115|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045018 (Klebsiella pneumoniae subsp. pneumoniae strain BK13048 plasmid pBK13048-3, complete sequence) position: , mismatch: 8, identity: 0.758

gaggcgagcgaacgcaaggctgaagtccgcaag	CRISPR spacer
gcgcgtattgaacgccaggctgaagcccgcaag	Protospacer
* *   * .****** *********.*******

21. spacer 1.28|607115|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to CP052354 (Klebsiella pneumoniae strain D16KP0146 plasmid unnamed) position: , mismatch: 8, identity: 0.758

gaggcgagcgaacgcaaggctgaagtccgcaag	CRISPR spacer
gcgcgtattgaacgccaggctgaagcccgcaag	Protospacer
* *   * .****** *********.*******

22. spacer 1.28|607115|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to CP052395 (Klebsiella pneumoniae strain C17KP0040 plasmid unnamed) position: , mismatch: 8, identity: 0.758

gaggcgagcgaacgcaaggctgaagtccgcaag	CRISPR spacer
gcgcgtattgaacgccaggctgaagcccgcaag	Protospacer
* *   * .****** *********.*******

23. spacer 1.28|607115|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033624 (Klebsiella pneumoniae strain 4743 plasmid unnamed6) position: , mismatch: 8, identity: 0.758

gaggcgagcgaacgcaaggctgaagtccgcaag	CRISPR spacer
gcgcgtattgaacgccaggctgaagcccgcaag	Protospacer
* *   * .****** *********.*******

24. spacer 1.28|607115|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015504 (Klebsiella pneumoniae strain SKGH01 plasmid unnamed 4, complete sequence) position: , mismatch: 8, identity: 0.758

gaggcgagcgaacgcaaggctgaagtccgcaag	CRISPR spacer
gcgcgtattgaacgccaggctgaagcccgcaag	Protospacer
* *   * .****** *********.*******

25. spacer 1.28|607115|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009878 (Klebsiella pneumoniae subsp. pneumoniae strain KPNIH31 plasmid pKPN-852, complete sequence) position: , mismatch: 8, identity: 0.758

gaggcgagcgaacgcaaggctgaagtccgcaag	CRISPR spacer
gcgcgtattgaacgccaggctgaagcccgcaag	Protospacer
* *   * .****** *********.*******

26. spacer 1.29|607180|34|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014142 (Thermus parvatiensis strain RL plasmid pTP143, complete sequence) position: , mismatch: 8, identity: 0.765

ccggctggacggccacaacgcacgggaggcggaa	CRISPR spacer
ccgctggcgcggccccaacgcccgggaggcggag	Protospacer
*** . * .***** ****** ***********.

27. spacer 1.29|607180|34|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 8, identity: 0.765

ccggctggacggccacaacgcacgggaggcggaa	CRISPR spacer
ccgctggcgcggccccaacgcccgggaggcggag	Protospacer
*** . * .***** ****** ***********.

28. spacer 1.39|607841|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.758

ggcgataccctcgggcaccgcgaacttggtggc	CRISPR spacer
gccgtcgaactcgggcaccgcgacctgggtggc	Protospacer
* ** ..  ************** ** ******

29. spacer 1.4|605527|35|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to AB452989 (Serratia phage KSP20 orf7 to orf11 genes for scaffolding protein, major capsid protein, terminase, head completion protein, hypothetical protein, complete and partial cds) position: , mismatch: 9, identity: 0.743

gtttccagcttctgctgcacggtcggggtgacgtt	CRISPR spacer
gcttccagcttctgctgcaccgttgggtcaacagc	Protospacer
*.****************** **.*** ..**. .

30. spacer 1.7|605724|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.727

gttgagcttggccacctgctgcaggtagccgtt	CRISPR spacer
gaccagcttggccacccgctccaggtagatgcg	Protospacer
* . ************.*** ******* .*.

31. spacer 1.7|605724|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016313 (Thermus brockianus strain GE-1 plasmid pTB1, complete sequence) position: , mismatch: 9, identity: 0.727

gttgagcttggccacctgctgcaggtagccgtt	CRISPR spacer
caggtacttggccacctcctgcgggtagccctc	Protospacer
   * .*********** ****.******* *.

32. spacer 1.7|605724|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033429 (Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.727

gttgagcttggccacctgctgcaggtagccgtt	CRISPR spacer
gttgagcttggcgaccggctgcagctgcaggcc	Protospacer
************ *** ******* *.   *..

33. spacer 1.7|605724|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to MN694568 (Marine virus AFVG_250M879, complete genome) position: , mismatch: 9, identity: 0.727

gttgagcttggccacctgctgcaggtagccgtt	CRISPR spacer
ctccagcttggacaactgctgcaggtagtctag	Protospacer
 *. ******* ** *************.*

34. spacer 1.17|606383|32|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026546 (Cupriavidus metallidurans strain Ni-2 plasmid unnamed2) position: , mismatch: 9, identity: 0.719

tcggccgtcaagcgaaaacgccgggatatgaa	CRISPR spacer
cctagggtcaagcgaaaacgccgtgctatggc	Protospacer
.* .  ***************** * ****.

35. spacer 1.23|606780|35|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 9, identity: 0.743

ccgcgatgcggcagcagcacggggagcagcagcat	CRISPR spacer
cgggagaccagcagccgcacgggaagcagcagcat	Protospacer
* * ..  *.***** *******.***********

36. spacer 1.32|607377|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN890657 (Candidatus Promineofilum breve strain Cfx-K plasmid III, complete sequence) position: , mismatch: 9, identity: 0.727

cttcaagccgctcaacgccgatggtgcgtgcca	CRISPR spacer
caacccgccgctcgacgccgatggggcgtgggt	Protospacer
*  *  *******.********** *****

37. spacer 1.45|608235|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017296 (Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence) position: , mismatch: 9, identity: 0.727

gaggtgccatgacaaaagccctgcgtatcatga	CRISPR spacer
aatctaagatgacaaaagcactgggtatcatgt	Protospacer
.*  *.  *********** *** ********

38. spacer 1.22|606715|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022377 (Providencia stuartii strain BML2537 plasmid pBML2537, complete sequence) position: , mismatch: 10, identity: 0.697

cttttcgcatgcttaggggagggcggttctaat	CRISPR spacer
gggatatgatgctcaggggagggcagttctaag	Protospacer
    *   *****.**********.*******

39. spacer 1.22|606715|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NC_009139 (Yersinia ruckeri YR71 plasmid pYR1, complete sequence) position: , mismatch: 10, identity: 0.697

cttttcgcatgcttaggggagggcggttctaat	CRISPR spacer
gggatatgatgctcaggggagggcagttctaag	Protospacer
    *   *****.**********.*******

40. spacer 1.22|606715|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to KY014464 (Vibrio parahaemolyticus plasmid pVPS129, complete sequence) position: , mismatch: 10, identity: 0.697

cttttcgcatgcttaggggagggcggttctaat	CRISPR spacer
gggatatgatgctcaggggagggcagttctaag	Protospacer
    *   *****.**********.*******

41. spacer 1.22|606715|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053192 (Enterobacter hormaechei strain EGYMCRVIM plasmid pMS-37b, complete sequence) position: , mismatch: 10, identity: 0.697

cttttcgcatgcttaggggagggcggttctaat	CRISPR spacer
gggatatgatgctcaggggagggcagttctaag	Protospacer
    *   *****.**********.*******

42. spacer 1.24|606847|35|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 10, identity: 0.714

gcgcatttgcagcagcgcgggaccgcaccggcata	CRISPR spacer
aagcatttgcaacagcgcaggaccgcagtggtggc	Protospacer
. *********.******.******** .**..

43. spacer 1.40|607906|34|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 10, identity: 0.706

ggattcacgaatggccgggcctgctgttgctctt	CRISPR spacer
tggccgacgaatggccgggcgtgctgctgcaccc	Protospacer
 *... ************** *****.*** *..

44. spacer 1.41|607972|34|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

tttccgaccctgcacatggatcgtcaccgacgtg	CRISPR spacer
attggacgcctccacatggaacgtcaccgacgcc	Protospacer
 **  .  *** ******** ***********.

45. spacer 1.43|608104|33|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035380 (Leclercia adecarboxylata strain R25 plasmid pLA-109, complete sequence) position: , mismatch: 10, identity: 0.697

cgggcgttccttcctggtgtcgcgtggcgggaa	CRISPR spacer
ctattagtcctccctggtgtcgcgtggagggtt	Protospacer
* . .. ****.*************** ***

46. spacer 1.40|607906|34|LR134319|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 11, identity: 0.676

ggattcacgaatggccgggcctgctgttgctctt	CRISPR spacer
tggcggacgaatggccgggcgtgctcttgcatcc	Protospacer
 *..  ************** **** **** ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

58227 : 69539

Bacillus_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF13858.1\|58227_58617_-	response regulator receiver	W8CYM9	Bacillus_phage	2.6e-15	40.3
VEF13859.1\|58613_61520_-	two-component sensor	W8CYF6	Bacillus_phage	4.5e-27	33.5
VEF13860.1\|61617_63258_-	two-component response regulator	A0A127AWB9	Bacillus_phage	4.5e-16	35.8
VEF13861.1\|63250_63640_-	chemotaxis protein CheY	W8CYM9	Bacillus_phage	2.0e-07	31.6
VEF13862.1\|63636_66048_-	signal transduction histidine kinase	W8CYF6	Bacillus_phage	6.4e-27	34.7
VEF13863.1\|66124_66511_-	two-component response regulator	W8CYM9	Bacillus_phage	1.2e-12	35.0
VEF13864.1\|66560_69539_-	PAS domain-containing protein	W8CYF6	Bacillus_phage	2.1e-27	34.3

DBSCAN-SWA_2

410847 : 482068

Bacillus_virus(14.29%)

transposase,protease,integrase

attL 444958:444973|attR 463661:463676

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF14167.1\|410847_412227_-\|protease	membrane-bound protease	NA	NA	NA	NA
VEF14168.1\|412456_412654_+	Uncharacterised protein	NA	NA	NA	NA
VEF14169.1\|412650_413643_-	short chain dehydrogenase	NA	NA	NA	NA
VEF14170.1\|414085_414244_+	stress induced hydrophobic peptide	NA	NA	NA	NA
VEF14171.1\|414432_417954_+	sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	5.5e-35	40.8
VEF14172.1\|417955_418774_+	chemotaxis protein methyltransferase CheR	NA	NA	NA	NA
VEF14173.1\|418770_419373_+	chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	NA	NA	NA	NA
VEF14174.1\|419375_420566_+	sensor histidine kinase/response regulator	A0A1B0VMK3	Pseudomonas_phage	1.2e-18	31.1
VEF14175.1\|420776_422237_-	Selenoprotein O-like protein	A0A075BSJ0	Microcystis_phage	3.5e-60	35.6
VEF14176.1\|422328_425616_-	potassium efflux protein KefA	NA	NA	NA	NA
VEF14177.1\|425802_427548_-	potassium/proton antiporter	NA	NA	NA	NA
VEF14178.1\|427683_429486_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
VEF14179.1\|429588_430479_-	geranylgeranyl pyrophosphate synthetase	NA	NA	NA	NA
VEF14180.1\|430637_431678_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA
VEF14181.1\|431697_432984_+	zeaxanthin glucosyl transferase	NA	NA	NA	NA
VEF14182.1\|432973_434140_+	lycopene cyclase	NA	NA	NA	NA
VEF14183.1\|434136_435654_+	phytoene desaturase	NA	NA	NA	NA
VEF14184.1\|435650_436577_+	phytoene synthase	NA	NA	NA	NA
VEF14185.1\|436536_437070_-	beta-carotene hydroxylase	NA	NA	NA	NA
VEF14186.1\|437152_438196_-	2-nitropropane dioxygenase	NA	NA	NA	NA
VEF14187.1\|438330_439170_+	DNA catabolism protein	NA	NA	NA	NA
VEF14188.1\|439238_440213_-	serine/threonine protein kinase	NA	NA	NA	NA
VEF14189.1\|440267_440972_-	phosphoribosyl transferase	NA	NA	NA	NA
VEF14190.1\|441065_442121_+	biotin synthase	NA	NA	NA	NA
VEF14191.1\|442227_443406_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
VEF14192.1\|443398_444124_+	bioH protein	NA	NA	NA	NA
VEF14193.1\|444116_444914_+	biotin synthesis protein BioC	NA	NA	NA	NA
VEF14194.1\|444915_445623_+	dithiobiotin synthetase	NA	NA	NA	NA
444958:444973	attL	NA	NA	NA	NA
VEF14195.1\|445687_445936_+	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA
VEF14196.1\|446303_448109_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
VEF14197.1\|448265_449555_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	9.7e-06	25.8
VEF14198.1\|449693_451472_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
VEF14199.1\|451879_452149_-	peptide methionine sulfoxide reductase	NA	NA	NA	NA
VEF14200.1\|452424_453546_+	site-specific recombinase XerD	A0A1B1IQT7	uncultured_Mediterranean_phage	3.4e-07	27.5
VEF14201.1\|453538_454336_+	Uncharacterised protein	NA	NA	NA	NA
VEF14202.1\|454332_455598_+\|integrase	phage integrase family protein	NA	NA	NA	NA
VEF14203.1\|455590_457036_+\|integrase	phage integrase family protein	NA	NA	NA	NA
VEF14204.1\|457032_457866_-\|integrase	integrase catalytic region	U5P429	Shigella_phage	7.2e-103	66.7
VEF14205.1\|457904_458183_-\|transposase	ISxac3 transposase	U5P4I9	Shigella_phage	3.1e-18	60.0
VEF14206.1\|458465_459035_+	molecular chaperone	NA	NA	NA	NA
VEF14207.1\|459129_461979_+	ATPase	K4FB40	Cronobacter_phage	4.5e-128	40.8
VEF14208.1\|461995_463426_+	phospholipase D/Transphosphatidylase	NA	NA	NA	NA
VEF14209.1\|463453_465271_+\|protease	ATP-dependent metalloprotease FtsH	C7U047	Ostreococcus_tauri_virus	2.1e-102	40.8
463661:463676	attR	NA	NA	NA	NA
VEF14210.1\|465358_465817_+	molecular chaperone	NA	NA	NA	NA
VEF14211.1\|465839_466754_+	YfdX protein	NA	NA	NA	NA
VEF14212.1\|466919_467969_-\|transposase	transposase	NA	NA	NA	NA
VEF14213.1\|467965_468487_-\|transposase	transposase IS3	NA	NA	NA	NA
VEF14214.1\|468706_469402_+	YfdX protein	NA	NA	NA	NA
VEF14215.1\|469498_470110_+	membrane protein	NA	NA	NA	NA
VEF14216.1\|470189_471335_+	Uncharacterised protein	NA	NA	NA	NA
VEF14217.1\|471324_471558_+	thioredoxin	NA	NA	NA	NA
VEF14218.1\|472612_473344_+\|transposase	putative transposase subunit B	Q8W6R2	Burkholderia_virus	1.6e-101	76.7
VEF14219.1\|474140_476045_+	PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase	G3MA91	Bacillus_virus	9.2e-29	38.4
VEF14220.1\|476265_477246_+\|transposase	transposase	A0A077K814	Ralstonia_phage	1.3e-95	58.0
VEF14221.1\|477424_477895_+	Predicted membrane protein	NA	NA	NA	NA
VEF14222.1\|477933_478497_+\|protease	Zn-dependent protease with chaperone function	NA	NA	NA	NA
VEF14223.1\|478520_479675_+\|protease	serine protease AlgW	A0A1B1IT49	uncultured_Mediterranean_phage	3.4e-26	37.1
VEF14224.1\|479688_480090_+	integral membrane sensor signal transduction histidine kinase	NA	NA	NA	NA
VEF14225.1\|480439_480820_+	TonB-dependent receptor protein	NA	NA	NA	NA
VEF14226.1\|481036_482068_+\|transposase	transposase for insertion sequence element IS1001	A4PE56	Ralstonia_virus	5.2e-103	57.7

DBSCAN-SWA_3

918882 : 928073

Pseudomonas_phage(33.33%)

transposase,integrase

attL 917365:917380|attR 937778:937793

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
917365:917380	attL	NA	NA	NA	NA
VEF14625.1\|918882_921921_+	helicase	A0A2L0WU59	Oxyplax_ochracea_nucleopolyhedrovirus	2.3e-21	23.1
VEF14626.1\|922460_923252_-	Uncharacterised protein	A0A1B0VMD9	Pseudomonas_phage	5.5e-52	48.1
VEF14627.1\|923232_924153_-	phage replication protein	A0A1B0VME0	Pseudomonas_phage	2.4e-51	65.6
VEF14628.1\|924149_924722_-	phage-encoded protein	G0ZND1	Cronobacter_phage	2.4e-57	61.2
VEF14629.1\|925287_926019_+\|transposase	putative transposase subunit B	Q8W6R2	Burkholderia_virus	1.6e-101	76.7
VEF14630.1\|926020_926203_-	Uncharacterised protein	NA	NA	NA	NA
VEF14631.1\|926834_928073_-\|integrase	putative phage integrase	A0A2H4JAT5	uncultured_Caudovirales_phage	9.4e-83	43.9
937778:937793	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1269280 : 1329653

Staphylococcus_phage(12.5%)

transposase,tRNA,integrase

attL 1270348:1270366|attR 1326442:1326460

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF14932.1\|1269280_1270570_+\|tRNA	histidyl-tRNA synthetase	NA	NA	NA	NA
1270348:1270366	attL	NA	NA	NA	NA
VEF14933.1\|1270597_1271239_+	GTP-binding protein	NA	NA	NA	NA
VEF14934.1\|1271242_1272391_+	outer membrane assembly lipoprotein YfgL	NA	NA	NA	NA
VEF14935.1\|1272493_1273993_+	GTP-binding protein EngA	NA	NA	NA	NA
VEF14936.1\|1274076_1274871_-	serine acetyltransferase	NA	NA	NA	NA
VEF14937.1\|1275030_1276179_+	putative aminotransferase	NA	NA	NA	NA
VEF14938.1\|1276166_1276961_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA
VEF14939.1\|1276957_1278295_-	amino acid transporter	NA	NA	NA	NA
VEF14940.1\|1278309_1279110_-	putative methyltransferase	NA	NA	NA	NA
VEF14941.1\|1279321_1279687_-	Protein of Uncharacterised function (DUF2784)	NA	NA	NA	NA
VEF14942.1\|1279691_1280333_-	membrane protein	NA	NA	NA	NA
VEF14943.1\|1280388_1281120_-	DNA-specific endonuclease I	NA	NA	NA	NA
VEF14944.1\|1281220_1282078_-	carboxylate/amino acid/amine transporter	NA	NA	NA	NA
VEF14945.1\|1282167_1283223_-	oxidoreductase, zinc-binding	A0A2K9L339	Tupanvirus	3.0e-77	46.0
VEF14946.1\|1283471_1285142_-	2-isopropylmalate synthase	NA	NA	NA	NA
VEF14947.1\|1285457_1285838_+	Protein of uncharacterised function (DUF2946)	NA	NA	NA	NA
VEF14948.1\|1285888_1288084_+	outer membrane protein OprC	NA	NA	NA	NA
VEF14949.1\|1288251_1289553_-	small-conductance mechanosensitive channel	NA	NA	NA	NA
VEF14950.1\|1289632_1290175_-	isochorismatase superfamily hydrolase	NA	NA	NA	NA
VEF14951.1\|1290194_1291019_-	M24/M37 family peptidase	V5R8R0	Arthrobacter_phage	2.7e-17	46.1
VEF14952.1\|1291112_1292489_-	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	6.2e-35	31.7
VEF14953.1\|1292619_1293171_+	sugar ABC transporter ATPase	NA	NA	NA	NA
VEF14954.1\|1293297_1294767_+	inosine 5'-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.4e-93	41.4
VEF14955.1\|1294883_1296464_+	GMP synthase	A0A1V0SH76	Hokovirus	4.5e-21	32.6
VEF14956.1\|1296574_1297945_+	multicopper oxidase	NA	NA	NA	NA
VEF14957.1\|1298009_1298447_+	cytidine/deoxycytidylate deaminase	S4VYT2	Pandoravirus	9.6e-06	37.9
VEF14958.1\|1298443_1299541_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.4e-23	32.9
VEF14959.1\|1299537_1300458_-	ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	1.1e-19	27.0
VEF14960.1\|1300732_1301059_+	glutaredoxin-like protein	NA	NA	NA	NA
VEF14961.1\|1301250_1301613_+	VanZ like family protein	NA	NA	NA	NA
VEF14962.1\|1301897_1303094_-	aromatic amino acid aminotransferase	NA	NA	NA	NA
VEF14963.1\|1303391_1305407_+	excinuclease ABC subunit B	NA	NA	NA	NA
VEF14964.1\|1305565_1307047_+\|tRNA	glutamyl-tRNA synthetase	NA	NA	NA	NA
VEF14965.1\|1307860_1308310_+	4-hydroxybenzoyl-CoA thioesterase domain-containing protein	NA	NA	NA	NA
VEF14966.1\|1308320_1308572_-	Uncharacterised protein	NA	NA	NA	NA
VEF14967.1\|1308869_1310039_+\|integrase	phage integrase family protein	B7SYF8	Stenotrophomonas_phage	7.8e-71	38.0
VEF14968.1\|1310050_1310248_-	prophage PSPPH01, DNA-binding protein	NA	NA	NA	NA
VEF14969.1\|1310403_1310925_+\|transposase	transposase IS3	NA	NA	NA	NA
VEF14970.1\|1310921_1311971_+\|transposase	transposase	NA	NA	NA	NA
VEF14971.1\|1311976_1312216_-	Uncharacterised protein	NA	NA	NA	NA
VEF14972.1\|1312463_1312793_+	Uncharacterised protein	NA	NA	NA	NA
VEF14973.1\|1312902_1314102_-	protein UmuC	I6RSM4	Salmonella_phage	2.5e-104	50.4
VEF14974.1\|1314172_1314610_-	ultraviolet light resistance protein A	A0A1W6JNS2	Morganella_phage	5.4e-17	34.6
VEF14975.1\|1314887_1315193_+	Uncharacterised protein	NA	NA	NA	NA
VEF14976.1\|1315621_1315876_+	Uncharacterised protein	NA	NA	NA	NA
VEF14977.1\|1315902_1317669_+	type I restriction enzyme M protein	NA	NA	NA	NA
VEF14978.1\|1317744_1320162_+	type I restriction-modification system, M subunit	A0A2H4PQP4	Staphylococcus_phage	1.8e-74	37.8
VEF14979.1\|1320158_1321385_+	Type I restriction-modification system, specificity subunit S	A0A2H4PQP5	Staphylococcus_phage	1.5e-11	27.9
VEF14980.1\|1321428_1321689_+	Uncharacterised protein	NA	NA	NA	NA
VEF14981.1\|1321705_1323130_+	ATP-dependent DNA helicase recG	NA	NA	NA	NA
VEF14982.1\|1323143_1326251_+	type I restriction enzyme	A0A220A398	Liberibacter_phage	1.3e-59	29.6
VEF14983.1\|1326240_1326966_+	metal-dependent hydrolase	NA	NA	NA	NA
1326442:1326460	attR	NA	NA	NA	NA
VEF14984.1\|1327390_1327768_+\|transposase	putative transposase	NA	NA	NA	NA
VEF14985.1\|1327764_1328109_+\|transposase	putative transposase	A0A0P0ZDM8	Stx2-converting_phage	9.7e-38	68.2
VEF14986.1\|1328144_1329653_+\|transposase	putative transposase	A0A0P0ZBS5	Stx2-converting_phage	2.5e-146	55.7

DBSCAN-SWA_5

2147989 : 2161768

uncultured_Caudovirales_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF15743.1\|2147989_2150521_+	pyrroloquinoline quinone biosynthesis protein F	A0A1V0SJA4	Klosneuvirus	3.5e-15	29.0
VEF15744.1\|2150778_2151966_+	outer membrane protein (porin)	NA	NA	NA	NA
VEF15745.1\|2152315_2153443_+	GfdT protein	NA	NA	NA	NA
VEF15746.1\|2153402_2156012_+	two-component sensor	A0A2K9L5I4	Tupanvirus	7.5e-13	28.0
VEF15747.1\|2156051_2157056_-	glutathione S-transferase	NA	NA	NA	NA
VEF15748.1\|2157140_2158124_-	anthranilate phosphoribosyltransferase	A0A2H4JBY5	uncultured_Caudovirales_phage	7.6e-144	75.5
VEF15749.1\|2158120_2158453_-	dissimilatory sulfite reductase (desulfoviridin) subunit gamma	A0A2H4J8B6	uncultured_Caudovirales_phage	1.3e-39	73.4
VEF15750.1\|2158449_2158752_-	DsrH family protein	A0A2H4JG28	uncultured_Caudovirales_phage	9.2e-24	58.0
VEF15751.1\|2158751_2159111_-	sulfur relay protein TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	9.8e-33	62.5
VEF15752.1\|2159110_2159572_-	sulfur relay protein TusD/DsrE	A0A2H4JA39	uncultured_Caudovirales_phage	1.4e-47	72.1
VEF15753.1\|2159731_2161000_+	major facilitator superfamily transporter	NA	NA	NA	NA
VEF15754.1\|2161099_2161768_-	FtsH-interacting integral membrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.9e-86	76.2

DBSCAN-SWA_6

2581324 : 2609334

Shigella_phage(40.0%)

transposase,integrase

attL 2578487:2578501|attR 2593773:2593787

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2578487:2578501	attL	NA	NA	NA	NA
VEF16103.1\|2581324_2581603_+\|transposase	ISxac3 transposase	U5P4I9	Shigella_phage	2.8e-19	62.5
VEF16104.1\|2581857_2582475_+\|integrase	integrase catalytic region	U5P429	Shigella_phage	5.6e-76	65.9
VEF16105.1\|2582637_2583219_-	Uncharacterised protein	NA	NA	NA	NA
VEF16106.1\|2583211_2584633_-	Uncharacterised protein	NA	NA	NA	NA
VEF16107.1\|2584629_2587605_-	Chromosome segregation ATPase	NA	NA	NA	NA
VEF16108.1\|2587601_2588423_-	Uncharacterised protein	NA	NA	NA	NA
VEF16109.1\|2588733_2589609_+	transcriptional regulator	NA	NA	NA	NA
VEF16110.1\|2589789_2590608_-\|transposase	putative transposase	W5R8L2	Staphylococcus_phage	3.5e-33	35.0
VEF16111.1\|2590727_2591777_-	Uncharacterised protein	NA	NA	NA	NA
VEF16112.1\|2591899_2592001_-	Uncharacterised protein	NA	NA	NA	NA
VEF16113.1\|2592539_2595158_+	Inactivated superfamily I helicase	NA	NA	NA	NA
2593773:2593787	attR	NA	NA	NA	NA
VEF16114.1\|2595154_2598331_+	UvrD/REP helicase	A0A172PZX3	Pseudomonas_phage	1.7e-06	42.3
VEF16115.1\|2598385_2599597_+	Predicted HKD family nuclease	NA	NA	NA	NA
VEF16116.1\|2599745_2599886_-	Uncharacterised protein	NA	NA	NA	NA
VEF16117.1\|2600045_2600378_+	Uncharacterised protein	NA	NA	NA	NA
VEF16118.1\|2601597_2602380_+	Uncharacterised protein	NA	NA	NA	NA
VEF16119.1\|2602366_2605855_+	DEAD/DEAH box helicase	M1H1D9	Paramecium_bursaria_Chlorella_virus	9.0e-14	24.2
VEF16120.1\|2606039_2607410_+\|transposase	transposase	NA	NA	NA	NA
VEF16121.1\|2607766_2608288_+\|transposase	transposase IS3	NA	NA	NA	NA
VEF16122.1\|2608284_2609334_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_7

4331919 : 4392265

Shigella_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF17781.1\|4331919_4332969_-\|transposase	transposase	NA	NA	NA	NA
VEF17782.1\|4332965_4333487_-\|transposase	transposase IS3	NA	NA	NA	NA
VEF17783.1\|4333521_4334178_-	Uncharacterised protein	NA	NA	NA	NA
VEF17784.1\|4334616_4335168_+	membrane protein	NA	NA	NA	NA
VEF17785.1\|4335295_4336198_+	transcriptional regulator	NA	NA	NA	NA
VEF17786.1\|4336320_4337802_-	protein YdgA	NA	NA	NA	NA
VEF17787.1\|4337986_4338184_-	Protein of uncharacterised function (DUF2934)	NA	NA	NA	NA
VEF17788.1\|4338435_4340100_+	phosphoglucomutase	NA	NA	NA	NA
VEF17789.1\|4340121_4340295_-	Uncharacterised protein	NA	NA	NA	NA
VEF17790.1\|4340407_4341391_-	alcohol dehydrogenase	NA	NA	NA	NA
VEF17791.1\|4341567_4341993_+	ring-cleaving dioxygenase	NA	NA	NA	NA
VEF17792.1\|4341999_4342536_-	anhydrase family 3 protein	NA	NA	NA	NA
VEF17793.1\|4342761_4344813_+	oligopeptidase A	NA	NA	NA	NA
VEF17794.1\|4344809_4345088_+	nucleic-acid-binding protein	NA	NA	NA	NA
VEF17795.1\|4345091_4345859_+	Domain of uncharacterised function (DUF1835)	NA	NA	NA	NA
VEF17796.1\|4345994_4347065_-	sugar acetylase	A9YX16	Burkholderia_phage	1.8e-37	34.1
VEF17797.1\|4347362_4348427_+	radical SAM domain-containing protein	NA	NA	NA	NA
VEF17798.1\|4348627_4349380_+	carbonic anhydrase	NA	NA	NA	NA
VEF17799.1\|4349455_4350994_+	sulfate transporter	NA	NA	NA	NA
VEF17800.1\|4351094_4351361_+	amino acid transporter	NA	NA	NA	NA
VEF17801.1\|4351593_4352727_+	cytochrome c oxidase subunit II	NA	NA	NA	NA
VEF17802.1\|4352739_4354368_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	5.0e-07	35.0
VEF17803.1\|4354416_4354989_+	cytochrome C oxidase assembly protein	NA	NA	NA	NA
VEF17804.1\|4354985_4355879_+	cytochrome c oxidase subunit III	NA	NA	NA	NA
VEF17805.1\|4355886_4356090_-	major facilitator superfamily permease	NA	NA	NA	NA
VEF17806.1\|4356160_4356898_+	protein Surf1	NA	NA	NA	NA
VEF17807.1\|4356872_4357451_+	Uncharacterised protein	NA	NA	NA	NA
VEF17808.1\|4357503_4358559_+	cytochrome oxidase assembly protein	NA	NA	NA	NA
VEF17809.1\|4358575_4359475_+	protoheme IX farnesyltransferase	NA	NA	NA	NA
VEF17810.1\|4359653_4360289_+	Sco1/SenC family protein	NA	NA	NA	NA
VEF17811.1\|4360310_4361516_-	iron-regulated membrane protein	NA	NA	NA	NA
VEF17812.1\|4361583_4364058_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
VEF17813.1\|4364157_4365120_-	transmembrane sensor	NA	NA	NA	NA
VEF17814.1\|4365119_4365635_-	ECF subfamily RNA polymerase sigma-70 factor	NA	NA	NA	NA
VEF17815.1\|4365800_4366331_+	Protein of uncharacterised function (DUF3617)	NA	NA	NA	NA
VEF17816.1\|4366373_4366736_-	NADH:ubiquinone oxidoreductase 49 kD subunit 7	NA	NA	NA	NA
VEF17817.1\|4366807_4367794_+	cobalamin synthesis protein/P47K family protein	NA	NA	NA	NA
VEF17818.1\|4367799_4368174_-	Protein of uncharacterised function (DUF3301)	NA	NA	NA	NA
VEF17819.1\|4368254_4368662_-	cell wall assembly protein	NA	NA	NA	NA
VEF17820.1\|4368892_4371163_+	phytochrome family protein	B5LWN8	Feldmannia_species_virus	7.4e-33	22.9
VEF17821.1\|4371162_4371639_+	response regulator	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	26.9
VEF17822.1\|4371702_4374108_+	sensory box histidine kinase/response regulator	NA	NA	NA	NA
VEF17823.1\|4374100_4374655_+	heme oxygenase	NA	NA	NA	NA
VEF17824.1\|4374758_4375787_-\|transposase	putative transposase	W5R8L2	Staphylococcus_phage	7.7e-46	36.2
VEF17825.1\|4376832_4377267_+	putative disulfide formation protein	NA	NA	NA	NA
VEF17826.1\|4377263_4377944_+	outer membrane protein	NA	NA	NA	NA
VEF17827.1\|4377948_4378410_+	protein-S-isoprenylcysteine methyltransferase	NA	NA	NA	NA
VEF17828.1\|4378579_4379500_-	cation efflux system protein	NA	NA	NA	NA
VEF17829.1\|4379900_4380131_+	Uncharacterised protein	NA	NA	NA	NA
VEF17830.1\|4380358_4383523_-	cation efflux family protein	NA	NA	NA	NA
VEF17831.1\|4383542_4384850_-	CzcB family cobalt/zinc/cadmium efflux transporter membrane fusion protein	NA	NA	NA	NA
VEF17832.1\|4384891_4386127_-	cobalt-zinc-cadmium resistance protein CzcC	NA	NA	NA	NA
VEF17833.1\|4386434_4387757_+	outer membrane porin	NA	NA	NA	NA
VEF17834.1\|4388073_4388748_+	DNA-binding response regulator CzrR	W8CYM9	Bacillus_phage	1.6e-28	34.1
VEF17835.1\|4388744_4390118_+	heavy metal sensor histidine kinase	W8CYF6	Bacillus_phage	1.1e-15	24.1
VEF17836.1\|4390756_4390987_+	Uncharacterised protein	NA	NA	NA	NA
VEF17837.1\|4391119_4391398_+\|transposase	ISPsy26, transposase orfA	U5P4I9	Shigella_phage	1.4e-18	62.5
VEF17838.1\|4391388_4392060_+\|transposase	putative transposase	U5P429	Shigella_phage	9.7e-58	61.9
VEF17839.1\|4392034_4392265_+\|transposase	putative transposase	U5P429	Shigella_phage	4.8e-25	69.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage