CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134324	Stenotrophomonas maltophilia strain NCTC10259 genome assembly, chromosome: 1	6 crisprs	DEDDh,csa3,Cas9_archaeal,DinG,cas3,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134324_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134324_1

95618-95706

Orphan

Consensus_repeat	Method
AGCGTGCCGACCAAGGTCGGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134324_1

>merge|LR134324|1|95618-95706|CRISPRCasFinder
AGCGTGCCGACCAAGGTCGGCACCTACCAAAGCCGTGTGCTGCCAGGCGTCAAGCCCGCCGACGGAGCGTGCCGATCAAGGTCGGCACC

>LR134324|1|1|95618-95706|CRISPRCasFinder
AGCGTGCCGACCAAGGTCGGCACC	TACCAAAGCCGTGTGCTGCCAGGCGTCAAGCCCGCCGACGG
AGCGTGCCGATCAAGGTCGGCACC

Protein	Signature genes	Signature genes Name	Protein_function
LR134324.1\|VEF33230.1\|95735_96542_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224630
LR134324.1\|VEF33222.1\|87356_87944_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|234675
LR134324.1\|VEF33238.1\|102909_104133_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
LR134324.1\|VEF33233.1\|97751_98756_+\|transmembrane-protein	unknown	unknown	gnl\|CDD\|377369
LR134324.1\|VEF33228.1\|93114_94314_-\|bifunctional-chorismate-mutase/prephenate-dehydratase	unknown	unknown	gnl\|CDD\|223155
LR134324.1\|VEF33227.1\|91730_93038_-\|5-Enolpyruvylshikimate-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|237820
LR134324.1\|VEF33239.1\|104129_105671_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
LR134324.1\|VEF33224.1\|88509_89910_-\|seryl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235461
LR134324.1\|VEF33231.1\|96667_96943_+\|polyhydroxyalkanoic-acid-system-protein	unknown	unknown	gnl\|CDD\|378230
LR134324.1\|VEF33229.1\|94365_95451_-\|phosphoserine-aminotransferase	unknown	unknown	gnl\|CDD\|235428
LR134324.1\|VEF33236.1\|100714_101443_-\|Histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|188194
LR134324.1\|VEF33226.1\|90781_91354_+\|TonB-family-protein	unknown	unknown	gnl\|CDD\|367555
LR134324.1\|VEF33235.1\|99565_100480_-\|ISStmaD4-Transposase	unknown	unknown	gnl\|CDD\|226077
LR134324.1\|VEF33234.1\|98902_99295_-\|phage-like-protein	unknown	unknown	gnl\|CDD\|374224
LR134324.1\|VEF33225.1\|90023_90662_+\|TonB-domain-containing-protein	unknown	unknown	gnl\|CDD\|367555
LR134324.1\|VEF33221.1\|86236_87229_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176162
LR134324.1\|VEF33232.1\|97023_97515_+\|Poly(Hydroxyalcanoate)-granule-associated-protein	unknown	unknown	gnl\|CDD\|377530
LR134324.1\|VEF33220.1\|85107_86181_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379427
LR134324.1\|VEF33237.1\|101471_102842_-\|formiminoglutamic-iminohydrolase	unknown	unknown	gnl\|CDD\|236420
LR134324.1\|VEF33223.1\|88080_88443_+\|Variant-SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|212734

Protein	Function_ID	Function_description	E-value
LR134324.1\|VEF33230.1\|95735_96542_-\|FHA-domain-containing-protein	gnl\|CDD\|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	4.592e-15
LR134324.1\|VEF33222.1\|87356_87944_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|234675	PRK00170, PRK00170, azoreductase; Reviewed.	1.14894e-76
LR134324.1\|VEF33238.1\|102909_104133_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
LR134324.1\|VEF33233.1\|97751_98756_+\|transmembrane-protein	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	1.37079e-05
LR134324.1\|VEF33228.1\|93114_94314_-\|bifunctional-chorismate-mutase/prephenate-dehydratase	gnl\|CDD\|223155	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism].	6.71483e-120
LR134324.1\|VEF33227.1\|91730_93038_-\|5-Enolpyruvylshikimate-3-phosphate-synthase	gnl\|CDD\|237820	PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
LR134324.1\|VEF33239.1\|104129_105671_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
LR134324.1\|VEF33224.1\|88509_89910_-\|seryl-tRNA-synthetase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
LR134324.1\|VEF33231.1\|96667_96943_+\|polyhydroxyalkanoic-acid-system-protein	gnl\|CDD\|378230	pfam09650, PHA_gran_rgn, Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn). Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins found at the surface of PHA granules. These proteins have so far been found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.	3.66575e-33
LR134324.1\|VEF33229.1\|94365_95451_-\|phosphoserine-aminotransferase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
LR134324.1\|VEF33236.1\|100714_101443_-\|Histidine-utilization-repressor	gnl\|CDD\|188194	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators. [Energy metabolism, Amino acids and amines, Regulatory functions, DNA interactions].	3.86124e-94
LR134324.1\|VEF33226.1\|90781_91354_+\|TonB-family-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	9.64816e-21
LR134324.1\|VEF33235.1\|99565_100480_-\|ISStmaD4-Transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.37205e-23
LR134324.1\|VEF33234.1\|98902_99295_-\|phage-like-protein	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	5.7332e-45
LR134324.1\|VEF33225.1\|90023_90662_+\|TonB-domain-containing-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	1.80341e-25
LR134324.1\|VEF33221.1\|86236_87229_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176162	cd08473, PBP2_CrgA_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 4. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.42339e-98
LR134324.1\|VEF33232.1\|97023_97515_+\|Poly(Hydroxyalcanoate)-granule-associated-protein	gnl\|CDD\|377530	pfam05597, Phasin, Poly(hydroxyalcanoate) granule associated protein (phasin). Polyhydroxyalkanoates (PHAs) are storage polyesters synthesized by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.	3.1223e-42
LR134324.1\|VEF33220.1\|85107_86181_+\|Uncharacterised-protein	gnl\|CDD\|379427	pfam14025, DUF4241, Protein of unknown function (DUF4241). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 205 and 315 amino acids in length. There is a conserved GDG sequence motif at the C-terminus.	2.14464e-39
LR134324.1\|VEF33237.1\|101471_102842_-\|formiminoglutamic-iminohydrolase	gnl\|CDD\|236420	PRK09229, PRK09229, N-formimino-L-glutamate deiminase; Validated.	0
LR134324.1\|VEF33223.1\|88080_88443_+\|Variant-SH3-domain-containing-protein	gnl\|CDD\|212734	cd11800, SH3_DNMBP_C2_like, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains. DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. Also included in this subfamily is the second C-terminal SH3 domain of Rho guanine nucleotide exchange factor 37 (ARHGEF37), whose function is still unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.	0.00661413

>LR134324.1|VEF33229.1|94365_95451_-|phosphoserine-aminotransferase
MTRAFNFSAGPATLPESVLRQAQAEMLDWHGSGASIVEMSHRGAEFMSVAAEAEADLRRLLDIPDDYAVLFLSGGATTQQALIPLNFASPGQRADYVVSGHWGKTAVKQAGVYVDVNIAASSEPDGYRTLPPRADWQLSPDAAYVHITANETIHGVEFRDVPDTGDVPLVADFSSSIASEPLDVRRYGVIYAGAQKNLGPVGIAVMIVRRDLLERTGQPRADIFDYRSHVARDSMLNTPPTWNWYLAGLVFKWMLAEGGVAEFARRNAAKAALVYGAIDGSGGFYRNEVAHAARSRMNIPFFLPDAGLDARFVAEAKAAGLLALKGHKVVGGIRASLYNAMPLAGAEALVAFMADFQQRHG
>LR134324.1|VEF33228.1|93114_94314_-|bifunctional-chorismate-mutase/prephenate-dehydratase
MASSKSSKKAPKKAEPAKDSAPSKAKGKAKAASNPAPTLAPLALADVRSKIDQIDRDIQSLIAERARFAHQVGKAKGKLAAAVDYYRPEREAQVLRMVVDRNEGPLSDELLVHVYREIMSACLAQQEPLKIGYLGPEGTFSQQAVLKHFGRSALGLPMASIEEVFQEVEAGNADFGVVPVENSGQGTIQITLDMFLTSNLKICGEVELRVQQFLMSRSGRIEDIERIYAHPQSFMQTSAWLRANLPKAEKIPVSSNAEGARRARNADDAAAIGGESAGHVYGLKKVVTKPIQNDADNTTRFLVVGRNIFPTSGHDRTSVLVFIHDKPGALFDVLSPFARHGISMNRIESRPSHHGKWEYGFFIDLAGHIDDAPMQAALAELEAHSAQIKVLGSYPVAVP
>LR134324.1|VEF33227.1|91730_93038_-|5-Enolpyruvylshikimate-3-phosphate-synthase
MSNAQHWIARKGQPLQGSLTIPGDKSVSHRSVMFAALADGTSHIEGFLEGEDTRATARIFSQLGVRIETPSPSQRIVHGVGIDGLKAPEAPLDCGNAGTGMRLLAGLLAGQAFDCTLIGDESLSGRPMRRVTGPLSQMGARIDTQDDGTPPLHVHGGQTLHGIDFASPVASAQIKSAVLLAGLYAQGETRVVEPHPTRDYTERMLSAFGVDIEFSPGKARLRGGQRLRATDIVVPADFSSAAFYLVAASIIPGSELRLKQVGLNPRRTGLLHALRLMGADITEENPAEQGGEPVADLVVRYAPLKGARIPEALVPDMIDEFPALFVAAAAAEGQTVVSGAAELRVKESDRLAAMATGLRALGMQVDETEDGATLHGGARLGSGTIESHGDHRIAMAFAIAGQISDGEVRINDIANVATSFPDFDGLARSAGFNLA
>LR134324.1|VEF33226.1|90781_91354_+|TonB-family-protein
MTATTHEDLHSPQLQQDASEQHKPTSPWMWIALIVAMFAAALLWLRHSNQEDVAPAPVGERMLPAPEQAPVADAQEPAARQAAPVGNQRKATPAVRNREARPLAGNIKPTYPAAALRNGVQGSVIASLNVDSRGQVTNAAIVSRSGERSRDLDRAVLSAVQNWKFQPAMHEGRAVASVVRVPVDFRTEQR
>LR134324.1|VEF33225.1|90023_90662_+|TonB-domain-containing-protein
MSAPRSSSAKSFTVHIPRNALKIAGIAFGVGVLLFVLVWLTGRDKEFFRADPAAQTPQETAQVEPLPEPLAAAAGSSDMPDAKPAPVEDDAPKLVETAPPPPAPIAEPAPATPSPAPAATGNSQPMPIAGQSPPPAYPAAALRAGETGSVVVRVDVDATGYPNNATVIQRSGSRELDRAATDAVRRWRFTPAQSNGQAVPGSIEVPFDFKTQ
>LR134324.1|VEF33224.1|88509_89910_-|seryl-tRNA-synthetase
MLDPALLRHQPADLAERLRTSRGFELDVSALESLEADRKRIQVRTQELQSLRNSRSKAIGQAKAKGEDVSAIMAEVAAFADELKASEVALDELREKIEAISMGIPNLPADDVPAGADENDNVEQARWGTPRQFDFKVLDHVELGARNGWLDGETAAKLSGSRFTVLRGPIARLHRALAQFMVDLHVDEHGYMELNVPVIVNADSLRGTGQLPKFEDDLFATFKLPDEHTKAKFVAEFSDWEDLKSAAQSNELRALHSLDGIIQSHKDRYLIPTAEVPLTNTVRGEILDLECLPLRMTAHSLCFRSEAGSGGRDVRGMIRQHQFEKVELVSISRPEDSDAEHQRMTRCAEVVLEKLGLPYRKVLLCTGDMGFSAVKTYDLEVWLPSQETYREISSCSNCGDFQARRMQARWRNPATGKPELAHTLNGSGVAVGRAMIAVMENYQNADGSITVPEALRPYMGGLETIG
>LR134324.1|VEF33223.1|88080_88443_+|Variant-SH3-domain-containing-protein
MNYIVTAAHRNEFPHPIILRRGQALVVGERYEGPEGWDDWFLCEAEGQQPGFVPAPVIGRDAQGGAFATQDYCARELDVDPGQTLRGMRTLNGWAWCVPENGEPGWVPLEKLRAIKESRA
>LR134324.1|VEF33222.1|87356_87944_+|FMN-dependent-NADH-azoreductase
MKLLHLDASVLGDNSVSRQLSAAVVARLASQIDGLKVDYRDLDANPVPHLRSSSLAKTDAAEATDAEQVMQQFLEADIVVIGAPMYNFSIPSTLKAWIDRVAVAGRTFKYTENGPVGLAGGKRVIIASSRGGIYTDSPADFQEPFLRQVFAFMGINEVEFVRAEGIAYSPQHREDAIAGALAALPSHEAAEAVAA
>LR134324.1|VEF33221.1|86236_87229_-|LysR-family-transcriptional-regulator
MHDLNDLYYFAMVVDHGGFAAAERALGIPKSRLSRRISQLETDLGVRLLQRSTRRFAVTDVGTSVHRHAQTMLAEAQAAREVVDRLSAEPRGVVRASVPVSLAQMQLPKLLPKFLEQYPKVRLQLNISNRRVDIINEGYDVALRVRSRLDDDGSLVMRSFGQVQELLVASPKYLDRAGRPKDPEELTQHVTLSISEDEARQRWELHGPEGEVRRVDLQPRVAGFDFPLLQSMVKDGFGITMLPETVCADAVRNGELEVVLPDWSLPQGVCHAVFASRRGLLPAVRVFIDFLAEHLPPQLEASRLDCGGACEKAKERIKASALGALAVDAG
>LR134324.1|VEF33220.1|85107_86181_+|Uncharacterised-protein
MAHLDLANLRTCLLDDTQLAAVALHRTFAGHLPVSSGHVVVCDPLVQAEAPALADYTAPLGRHPVEIIVHSGRPALAVVWFKPREALTATALHWQMARWTTQDLTGLDEDSFIGYPVDAGIGCFMDTDTQQALLALIERADGDEENEWSDALIDHDGLDEGAEYRPWGEDSPHGLVVFTSGWGDGVYPSYWALDTSGIPVALVTDFLCIQGGDGRDEREIADQAYRDNLPAAEAEALARLVAAVERDDAEALQTLLEDAPQRANLIEPGCGGTALYEAIRLDRPQALRVLLQGGALPAMPERLHMSKVTSYLDYARFLKKPRSAELMAVLEAPVVAAGPPPAAPRRRSFWDRLFGRN
>LR134324.1|VEF33230.1|95735_96542_-|FHA-domain-containing-protein
MQNLLVHFSQQQQPDQPLRPGVQRIVRQANGSVRLGDAGHGALLLAQFCMDDRGLWLQVGNGIRGIHVNGRPVRRMALLRAGDAVYVDGVEMVLQGEVESLLQAPAPKNEDGSDEQQRLLRGVGGLHHGRSFTLSQARLIGRGNEADIAIDDPAFAEQHARVEVHGERVLLRDLGSADGTRVNGVAVRHCWLQAGDQVVFDGQHRFVLEVPHDPRRRPLPAEDDASHEAEQAPVLPAAPRRVRRWPWLLVSALLLAALLSLLLWFGAR
>LR134324.1|VEF33231.1|96667_96943_+|polyhydroxyalkanoic-acid-system-protein
MSTIDVRHAHALPDAQARAAIEQVAAKLSERFGLKSSWTADVLNFSGSGVDGAIELQPGAVRVTAKLGFLLSAMKGMVEGEIQRVLKEKLG
>LR134324.1|VEF33232.1|97023_97515_+|Poly(Hydroxyalcanoate)-granule-associated-protein
MNHYENDDRRNDDASFGDQAERFSRKLSDSAQQVWLAGLGALGRAQAEGSRFFDGLVKEGEAWEARRRERNSEQGPGWRDNVETSLDEAREKASGTWNKVEKAFDDQVQGVLKRLHVPTADEVTALEARIDALHARLARLENRAASGADAPAPGSHQSPDSIP
>LR134324.1|VEF33233.1|97751_98756_+|transmembrane-protein
MLPWILALLSALLTCSLAVVYLWWIKRRQKEMQLGLQALAGMHWREFSVLVKRMLREQRGLRELIDPAEDAREPSSDFLLSDGPNQWLVSCKHGLAYRIGTAAVNELGAAARLAGAKGGVLLTEGRIERDGRGAAEKQAVEVLDGPRLWPLLQPYLPADIEARVRASARHEALRRIAIAALGSATLGLLVGLGLQGLHVEEATPVAAAPVVATPSAAPSAAPAPIEAVPAVAPAPTPAVAPATDARSNPDPDAATLERFQADLSRALAGKPGIASGVWLTRQTLAINRTGELEKVWPQVCEEVLHYPALRNVRIQLNARPGVDEPVRWRQCATY
>LR134324.1|VEF33234.1|98902_99295_-|phage-like-protein
MRYPVLIEAGDERTAWGVVVPDLPGCFSAADTLDDALSAAEEAALAWIDAALDEGRSIPTPSAPQKIAAEASKDLRWILAYICIDPALLDDTIERVNISLPRRILARLDAQARAAGESRSSYIAHLAALG
>LR134324.1|VEF33235.1|99565_100480_-|ISStmaD4-Transposase
MFGIGIDVSKATLDVAVHGEQFRQFSNDKRGFVRLIRWLKTWPIKQVVLEASGGYERAALDVLHAAGLPMVRINPARARRFAQGTGRAAKTDRLDATVLAQMAHLLPLTRYVPPAPWQQRLAEFAQCRRHLVQMRVSEMQRLRRLVDPDLIAMKQRHIAQLSDDLKQLDKAIAEQLEGQPGWKNIGALKGVGPILISTLACELPELGSLGSKAIASLVGLAPMNRESGTWQGQRRISGGRAVVREALYMAALTAIRYEPRLRAFYAGLKAKGKASKVALVAVMRKMLVILNARKRDAEVALGCP
>LR134324.1|VEF33236.1|100714_101443_-|Histidine-utilization-repressor
MKASKSATLNQRIRSDLESRILSGEWAPGFRIPYEHELMEQYGCSRMTVNKVLTALAESGMIERRRRAGSFVARQPPHLEQVALEIPDIAMEVGSREHQYAYRLLQRDLRLADAGNAGEVELAGSEMLLAMRCLHLADGRPLALEHRLISPVGVPEVLEVDFSTTAPGSWLLQNVSWTRAQHRISAWGADTATAKLLDVKPGTACLVIERLTWRGEQPITRVRQVFLGDAWDLVARFAPGAR
>LR134324.1|VEF33237.1|101471_102842_-|formiminoglutamic-iminohydrolase
MSDSRSPHSFHAAHALLAEGWVRDVRLQVQDGRIAAISTGQGAQAGDTRVGILVPGLPNLHSHAFQRGMAGLTEIGGGDGDSFWSWRELMYRFLAHLRPDAVQAIAAQAYMEMLESGFTRVGEFHYLHHDADGRPYTNRAEMSARIAAAADQTGIGLTLLPVFYAHADFGGAAPNPAQRRLIHDVDGFAQLLEAAKPALAALPDAVLGIAPHSLRAVTGEELSALLPLTDGPVHIHIAEQVREVEACLAWSGQRPVQWLYNHAPVDARWCLVHATHITDDERAAIVASQAVAGLCPITEANLGDGLFPMQAFAREGGRFGVGSDSNVLIDAAEELRLLEYGQRLTLRGRNVLAPDATRSSGRFLFEGALHGGAQALGVAAGLQVGASADLVELDAAHPALQARQDDAWLDSWVFAARNGALRSVWRHGRQCVAEGRHLQREAITSAFAAALRGVLG
>LR134324.1|VEF33238.1|102909_104133_+|imidazolonepropionase
MHVDTLWSNVHLITLDGEGLGVIRDGVLACADGRIVHVGAAGSDAHLQPTTRIDGEGRWISPGLIDCHTHLVYAGNRANEFEQRLQGVSYAEIARAGGGIVSTVRATRAATPEQLARESRPRLLAMRAEGVTTIEIKSGYGLTLPDERKQLQVARALGEECRVNVVTTFLGAHAVPPGREAQEYTDEVCNVMIPAIAAEDLAEAVDVFCENIAFSPAQARQVFEAARANGLSVKIHAEQLSNQHGAELAARFGALSADHIEHLDDAGIAAMAAAGTVAVLLPGAFYFTRDTTLPPIAALRAAGVPLALATDSNPGTSPLTSPLLAMNMGATLFRLTVDECIAGFTREAARALGHGERIGRLAVGMDCDLAIWDIDAPADLVYRIGFNPLHARVVRGQPNLPASWSNT
>LR134324.1|VEF33239.1|104129_105671_+|histidine-ammonia-lyase
MSNTLVLRPGHVTLAQWRQVYRGAPLALDPAALPVVRASAAAVAAIVAKGAPVYGINTGFGKLASVRIEREDLATLQRNIVLSHAAGVGEPMPASVVRLMMALKLVSLAQGASGIREETLLLLEAMLVKGVLPVVPAQGSVGASGDLAPLSHLASVMLGVGEAFLGDERLPAVDALARAGLQPIELGAKEGLALLNGTQFSTAYALAGLFEIETVFQAALVTGALSVEAAKGSDTPFDPRIHAIRGQRGQIATAATLRTLMQGSDIRESHRDNDVRVQDPYCLRCQPQVMGAALDILRQAATTLEIEANGVSDNPLVFTDTGEALSGGNFHAEPVAFAADMLAMAVCEIGSISERRLAMLVDPALSGLPAFLTPRPGLNSGFMIPQVTAAALVSENKQRAYPASVDSIPTSANQEDHVSMAAHGARRLMQMAENAANVIGIELLAAAQGCDFHAPLRSSAALETVRATLRAQVPTLEEDRYFHPDMVTATNLVRSGALAQGLTDLLPTVEPQA

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Crispr_ID: LR134324_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134324_2

353382-353476

TypeII

Consensus_repeat	Method
GCCGACCTTGGTCGGCACGCCCA	CRISPRCasFinder

1 spacers

Cas9_archaeal

The CRISPR arrays of LR134324_2

>merge|LR134324|2|353382-353476|CRISPRCasFinder
GCCGACCTTGGTCGGCACGCCCAGCTTCCCGTAGGTGCCGACCTTGGTCGGCACGCCCAGCTTCCCGTAGGTGCCGACCTTGGTCGGCACACCCA

>LR134324|2|2|353382-353476|CRISPRCasFinder
GCCGACCTTGGTCGGCACGCCCA	GCTTCCCGTAGGTGCCGACCTTGGTCGGCACGCCCAGCTTCCCGTAGGT
GCCGACCTTGGTCGGCACACCCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134324.1\|VEF33445.1\|340858_342190_+\|Exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
LR134324.1\|VEF33462.1\|361929_362493_-\|Protein-of-uncharacterised-function-(DUF3011)	unknown	unknown	gnl\|CDD\|371422
LR134324.1\|VEF33458.1\|356468_358259_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|185635
LR134324.1\|VEF33459.1\|358733_359399_+\|HNH-endonuclease	Cas9_archaeal	cas9_archaeal	gnl\|CDD\|224321
LR134324.1\|VEF33453.1\|351629_352391_-\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|180993
LR134324.1\|VEF33449.1\|346961_348035_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF33448.1\|345792_346872_+\|ribonuclease-D	unknown	unknown	gnl\|CDD\|130455
LR134324.1\|VEF33461.1\|361551_361755_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF33457.1\|355927_356404_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|377000
LR134324.1\|VEF33452.1\|351119_351623_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF33450.1\|348106_350437_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
LR134324.1\|VEF33446.1\|342840_343737_-\|Zn-dependent-protease-with-chaperone-function	unknown	unknown	gnl\|CDD\|320690
LR134324.1\|VEF33464.1\|363543_364251_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF33451.1\|350805_350979_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF33454.1\|352523_353366_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|185333
LR134324.1\|VEF33455.1\|353484_354510_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
LR134324.1\|VEF33447.1\|343821_345708_-\|sulfatase-modifying-factor-protein	unknown	unknown	gnl\|CDD\|335469
LR134324.1\|VEF33463.1\|362621_363293_-\|two-component-LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225107
LR134324.1\|VEF33456.1\|355210_355762_+\|Outer-membrane-lipoprotein-Blc	unknown	unknown	gnl\|CDD\|336958
LR134324.1\|VEF33460.1\|359501_361412_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470

Protein	Function_ID	Function_description	E-value
LR134324.1\|VEF33445.1\|340858_342190_+\|Exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
LR134324.1\|VEF33462.1\|361929_362493_-\|Protein-of-uncharacterised-function-(DUF3011)	gnl\|CDD\|371422	pfam11218, DUF3011, Protein of unknown function (DUF3011). This bacterial family of proteins has no known function. Most members belong to Proteobacteria.	1.2182e-31
LR134324.1\|VEF33453.1\|351629_352391_-\|3-oxoacyl-ACP-reductase	gnl\|CDD\|180993	PRK07478, PRK07478, short chain dehydrogenase; Provisional.	3.46652e-135
LR134324.1\|VEF33448.1\|345792_346872_+\|ribonuclease-D	gnl\|CDD\|130455	TIGR01388, Ribonuclease_D, ribonuclease D. This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown. [Transcription, RNA processing].	3.70655e-116
LR134324.1\|VEF33463.1\|362621_363293_-\|two-component-LuxR-family-transcriptional-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.82985e-44
LR134324.1\|VEF33458.1\|356468_358259_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|185635	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.	0
LR134324.1\|VEF33450.1\|348106_350437_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.10801e-46
LR134324.1\|VEF33446.1\|342840_343737_-\|Zn-dependent-protease-with-chaperone-function	gnl\|CDD\|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	9.61702e-85
LR134324.1\|VEF33459.1\|358733_359399_+\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	1.02079e-19
LR134324.1\|VEF33454.1\|352523_353366_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	1.08388e-94
LR134324.1\|VEF33455.1\|353484_354510_-\|quinone-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	2.48681e-166
LR134324.1\|VEF33447.1\|343821_345708_-\|sulfatase-modifying-factor-protein	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	1.90586e-71
LR134324.1\|VEF33457.1\|355927_356404_+\|Uncharacterised-protein	gnl\|CDD\|377000	pfam03168, LEA_2, Late embryogenesis abundant protein. Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.	7.45967e-05
LR134324.1\|VEF33456.1\|355210_355762_+\|Outer-membrane-lipoprotein-Blc	gnl\|CDD\|336958	pfam08212, Lipocalin_2, Lipocalin-like domain. Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The structure is an eight-stranded beta barrel.	1.19966e-60
LR134324.1\|VEF33460.1\|359501_361412_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0

>LR134324.1|VEF33454.1|352523_353366_+|AraC-family-transcriptional-regulator
MDSTATTALDARVERVCRHLQASLDEPSLQELADIAGCSPTRLHRLFKQATGLTPKQYAAALRADRLRTGLEQQERITDAFHDAGFGSSGRFYENAPKLLGMTPKQWRAGGRGEVIHFALAESSLGSVLVASSATGVVAILLGDDPEALLQSLQQRFRQAELVGADHGYEQLVAQVVGLVEDPSRGATLPLDIRGTAFQQRVWQALQQIPRGQTASYADIAAHIGAPRSSRAVARACASNPLAVAVPCHRVVRRDGDLSGYAWGVARKRELLRREKVANG
>LR134324.1|VEF33453.1|351629_352391_-|3-oxoacyl-ACP-reductase
MRLNNKIALITGASAGIGRASALRFAAEGAKLVLNARRPQPLHALAEQIRAGGGEVVVHAADVAEPGTAQALVDLAQQSFGGLDIALNNAGMLGPGVPAAEFPADAWREVMATNLDAAFHAARAQLPALLARGGGSLVFVGTFVGHTVGFPGMAAYASSKAGLIGLSQVIAAEYGARGVRSNVLLPGGTDTEMGRQAAPTGDARDFVRSLHALKRMAEPEEIANAALFLASDESSFVTGTAMRVEGGVSITRT
>LR134324.1|VEF33452.1|351119_351623_+|Uncharacterised-protein
MPSQSAMSPPAQHAARTLPMRLDPADGSIQLGHLTTLICPTLSLEEARIAFAMLMHGERDAGTGYHWLSLHRLSLGGAPAGISLCFHGQQLDMVKISVDLPGATLEDGWPTQVAIDAEVAFMRRTLATALGRKLAGGRARFEWGEAWARFDPKGFMASSGIRYTPRS
>LR134324.1|VEF33451.1|350805_350979_-|Uncharacterised-protein
MSERDKDPGDPKQGVQESRQDRAQEDVAKQRPGQRDQQVRDTHSRGPRRKDGDQEPA
>LR134324.1|VEF33450.1|348106_350437_-|TonB-dependent-receptor
MPSHSDSRRLSGMSSSFVSFRRHPLALACAGLALVGSFGAAAQDSAPTPTGLDTITVTAEHREQNLQEVPVSVGVVQGERMRDFTAGGDDTLLALSGRVPSLYAETTTGRIFPRFYIRGLGNIDFYLGASQPVSIIQDDVVLEHVVLKSNPVYDVDQVEVLRGPQGSLFGRNTTAGIIKFDTLKPTQDYTGRVSASYATYNSVSIDGGFGGPINDIASFRVSALYQHRDDYVDNTYKGPSADGTVSPKKNAMGGFDDRNVRAQLLLTPSDQFSILASAHARDYEGTSTLFLRGALTKGSNKTDVPRDQVAYDEADNNPQAYKTYGGSVKARYDFGAIDFTSITAYETTSGYSRGDTDGGAAVNFPVNGVPNGYGQSMGRIRDLDQWTQEFRLASHDDSALQWQAGAFYFNGSDTTDFYQRAWFLQGAARNPNNWVRLRNKNTSWAGFGQLSYAFTDKFTVTAGLRQTKDEKHTRLLKTADTAAGVVTYKGRTDVKMSDTTPSWDLSAMYQITPDVSVYAKVARGFRGPTIQGRSAVFNADFTTADSETILSWEAGVKSSLWDNRLRLNATAFTYTVNDIQLNGNDSDGNGVLFNADKAKAYGFEADMELRPIPNLTLSAGVSLLHSEIKDKRVYAQVCGLNGKVVCTVNDPTIKVGANTFAQIDGNPLPNAPKYNVNLAARYDFPVSDAGTMFVSTDWNKQGYTSFVLYDSKEFNSKGDFEGGLKIGYSGNYGAYEVALFARNITNEKNLKGVIENYMAAVYNEPRTVGVSLNMNW
>LR134324.1|VEF33449.1|346961_348035_+|Uncharacterised-protein
MQTLKIATACALLLTTLGLACSGQAAPLSYAQEKENTAKLVDIIDGATRDGLVAVLVPAPYVVHNGGPGIGSPVPGFHLGKRSTDLPGFSTRVSFQHKDIPSQGYVQLFNTNELETGPQRTVLMDVFEVHLIPPGTYLLNGAENYRLNTRVAKLKPLGTTDEVSKDIGATRLADVDYRFYSWKKVWVPPGVLTDQHSQQVCISVHVASGNCVAWGTQNYETSRPTEGYWDDRIVPEDIPAVRIQAVIAKAHAPLAFTAREGQILLSPFIVAADGDIDFNANDCAPVDKLTGCALRRFTVHYQPAPLDAARKHIAITSRGLNGKQRKVLERMEAMQLQVLGPSAPSDAALGKGVSATP
>LR134324.1|VEF33448.1|345792_346872_+|ribonuclease-D
MAIWITTPAELDPYFQQRPARIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMTEALAPWLADESIVKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLAGIGGGMGYQKLVAEITGVALAKGETRSDWMRRPLSESQLQYAADDVEHLFALHDAIDARLQALGRQQWLHDDGERLLASVANDEDRWPHLAMRSAQFLDTAAQHRLLRLLRWRDVQARSSDRPRSWILDNELAATLARTPPADAAALGKLFEQFPKAPRKLAGAVWQALDTPLADEAEAPLALPANDSNKQALKKLQDAVAERSRELGLPDGVLASRKHLESYLERRQWPAALAGWRQQELEARLQALLPAR
>LR134324.1|VEF33447.1|343821_345708_-|sulfatase-modifying-factor-protein
MRFPLSSVLCTALALAGCTPSPSATPEPGPAAGEDARPQQGMQADATPEAAQGSVTIAGEDAAEDVQRWTPPRVDRQGRSLAQLRRAAEKAFAEGRLYEDADAAVPLWLAVQEEDPDDRQARNGLQRARQRLQQQADALLVRPLQQREALAEASRQALVLLTLAPKDEKVRALQGRVELAQRVVAYNRAGEEDLRSGRIGEDGDGAIGNFREALALDEHNSRARQGLAAAESGLIRRAEDAARVRDFASAGTWLAEASKVRDSSPAIADAFERIEQIRAAALLQLRDDGLRELATPQGLKPAREKLAEALRIALPGDAVVAQLRERIDLATHYGSFRPGQVFSDAMRDGGRGPQMIVVPHGGFQMGAGDAEPGASDAERPSHYVRFDRGFAMAITEITVSDFERYVKSTNARPRATRRGHSVVYDERSGNFIRRSGVDWRSDYDGARALGNSPVMHVSVRDAENYAAWLSEQTGRSYRLPSEAEFEYALRAGSSGRYPWGDAGTPPPGAGNFTGSKDVSPSGRHWHNAFVGYGDGWWGPAPVASFQANAFGLHDMAGNLSEWVADCWHASYRRAPSDGVAWFNPGCRSRVIRGGNWANAPEQTRAAWRQSQDSDTTNARIGFRLVRGI
>LR134324.1|VEF33446.1|342840_343737_-|Zn-dependent-protease-with-chaperone-function
MRNDPFSRSPQGPQRRGLFGNIRWWVLLLAAGYAVFYWFSNRTVDPYTGEKVMIDSSLDARQETALGLQAYQQILSQERPMDPNAPIARDVRDIAQRLIAKVDVVETALAQEHGVQPAHFARDFQWEVNVIPSEQANAFCLPGGKMAVYTGLVPVARTRDAMAVVMGHEIAHALLRHGAQRMAQQKLTQIGQMAGAASGMDAQQQQMMMSAMGYGYLLPYARSHETQADEVGLMLAAAACFDPREAVPLWQRMGQASGGQAPPEFASTHPNPGTRIQNLQALMPKALEYRQKFCEQAK
>LR134324.1|VEF33445.1|340858_342190_+|Exodeoxyribonuclease-VII-large-subunit
MQPRNNDIFTPSQLNTLARDLLEGSFPAIWVEAELGSVARPASGHLYFTLKDARAQLRAAMFRMKAQYLKFVPREGMRVLVRGKVTLYDARGEYQMVLDHMEEAGEGALRRAFEELKARLEAEGLFDPARKRPLPAHVQRLAVITSPTGAAVRDVLSVLGRRFPLLEVDLLPTLVQGSSAAAQITRLLQAADASGRYDVILLTRGGGSLEDLWAFNDEALARAIAASHTPVVSAVGHETDFSLSDFAADLRAPTPSVAAELLVPDQRELALRLRRTAARMVQLQRHAMQQAMQRADRALLRLNAQSPQARLDLLRRRQLDLGRRLHAAFNQQQERRAARLRHAAAVLRGHHPQRQLDAMQRRLAALRGRPQAAMQRLLERDALRLRGLARSLEAVSPLATVARGYSILTRSDDGTLVRQIDQVKPGDALQARVGDGVIDVQVK
>LR134324.1|VEF33455.1|353484_354510_-|quinone-oxidoreductase
MSDSSTASRIVLASRPQGAPSAANFRLEQVALPALADGEVLLRNRYLSLDPYMRGRMDEGPSYAAPVAVGAVMEGQTVAEVLQSKAEGVTAGELVLAPGGWQTHAVLPAKALGRRLDPAGLPLSTALGVYGMPGFTAYSSLHEIARLKPGETLVVAAATGPVGATVAQLAKLQGARVVAIAGGEAKRAYLQTLGVDVALDHRVADFADQLRAAVPAGIDVYFENVGGHVLDAVLPLLNDFARIPVCGTIATYNERGVEQPGPDRLPSLFSQILRQRLTVRGFIVHDFNHLWPDFEREMLQWLREGRIQYREDVVEGLEKAPEAFFGLLQGRNFGKLVVKLD
>LR134324.1|VEF33456.1|355210_355762_+|Outer-membrane-lipoprotein-Blc
MHLRPALLACLLLAAFPVIATEPVRAVEHLDIDRYAGQWHEIAHLPVSFQKQCVGDITANYGLRRDGRISVTNACRKGDGERVVAEGVARPVAGHPGQLQVRFVPDWLSWAPLVWADYWVLALDPDYQWALVGEPGRKYLWILSRLPEMERDRFEQLKAKAESMGYDLGPLRLMAPLRDPAAD
>LR134324.1|VEF33457.1|355927_356404_+|Uncharacterised-protein
MLHRFRTALIVLCTLALVACSNGIVKRVSEPAASLQQLTVRADGNWTVALRLQNFSSMPMTFDDVSLALTVGDSDAGTLQVKPGISIGGTSADVINVDLVPSSTARLVVADALASNRTLAYALKGTVAATPQEKKQRSFDISSRSTLNQAPGLPGVLR
>LR134324.1|VEF33458.1|356468_358259_+|acyl-CoA-dehydrogenase
MSSYTAPLSDLRFALHDVLKVEPLFARLGFSDATADVVDAVLEEAGRFSATVLAPLNSVGDEIGCVLDQATGEVTTPPGFKQAYDQFVDGGWTGLTASPELGGQGLPHTLGVPLNEMINAANLAWGNFPLLSHGAIEALKQHGEAWQHDAFLKPLIEGRWTGTMCLTEPHCGTDLGLLKTKAEPNADGSYSITGTKIFITAGEHDLTGNIVHLVLAKLPDAPPGAKGISLFVTPKFKVDRDGNVGERNALRCGSIEHKMGIKGSVTCVMNFDGAQGYLVGQPHKGLQAMFTMMNTARLGVGLQGIGLSERAYQNALKYSRERLQSRALSGARFPEKPADPILVHPDVRRMLLTVKSLVEGSRLLALHAATLIDIAHHAQDAAERERADTLVSFLTPISKACQTEWGIENTYNALQCFGGHGYIREHGMEQLARDARITTLYEGTTGIQALDLIGRKTASSQGAGLKLMLAEIEAFAKEHEGNEALAEFIGPLRAKAAEWGKLTMDVLQRAAANPDELGAASYDYLFYSGYVVLAYWWARSVAAADASAHGAAFAQGKRETARFYFARVLPRTLSHAAAIQAGAAPLMAMDDERFGA
>LR134324.1|VEF33459.1|358733_359399_+|HNH-endonuclease
METDTTRLGLIEAGAPFSAPGAEASPNATTLHRPGSVRLLSLDAHGRVLDWITWQDAACLYAREAVAWTLGDPCLHIHGGTNRFSGLQSGMDLHPIIAARGHARSRAIDPTPNLTNQALFARDAHLCMYCGQQFSRPTLTRDHVMPLSKGGLDCWENVVTACFHCNSRKSDRTPQQAGMPLLAVPYRPSWIEHLILSNRNILADQMAFLKAQLPKRSKLST
>LR134324.1|VEF33460.1|359501_361412_+|1-deoxy-D-xylulose-5-phosphate-synthase
MMIDSARYPRLARIQTPDDLRTFDESELRAVADELRAYLIESVGKSGGHFAAGLGVIELTVALHYLYQTPHDQLVWDVGHQTYPHKILTGRRDEIHTVKQKDGIAPFPKREESEYDTFGVGHSSTSISAALGMAIARQSEGDDRKIVAVIGDGAMTAGMAFEALMHAGGMEPEPNLLVILNDNNMSISEAVGGLTKMLGRATGSRTLNALREGGKKILGDKKNNPARFVKRWEEHWKGMFVPSTMFEEMGFHYTGPIDGHDMPALLSTLKTLRASKGPKLLHVMTTKGKGYEPAEGDQIGYHAVGPFDPDKGLVAKAGAKKPTYTDVFSDWLCDAAAAEPRLYGITPAMREGSGLVRFSKEYPQRYFDVAIAEQHAVTLAAGMATQGGKPVVAIYSTFLQRAYDQLVHDVAIQDLDVLFAIDRAGVVGPDGATHAGNLDLSFLRCVPNLVVMAPSNEAECRQMLSTGLQHPGPAAVRYPRGTGTGVAAGTDLSTLPIGKGELRLQGSRIALLAFGSTVAAAEQVGRELGLSVVNMRFIKPLDRELVLAVAAQHEGLVTIEDNVVAGGAGSGVGELLNAEGVLRPILHLGLPDSYQHHASREDLLAEAGIDAAGIRAAVLKRWPQLAAGTPPLSAAG
>LR134324.1|VEF33461.1|361551_361755_-|Uncharacterised-protein
MLIRLQCEQRQWRVLHPDRPEPIEFRDGARAYDFAETLARLHFVDTGQRAAVRVEASGAFVEAVSYG
>LR134324.1|VEF33462.1|361929_362493_-|Protein-of-uncharacterised-function-(DUF3011)
MGKALTWRTLACTLLPMLAAAGGAQAQSYGYGYDDDRYGGRDGSGIVRCESVKNRSNECRLDGRARLIRQLSGSPCVEGETWGQSRNGVWVTQGCRAEFVGEYRRGGGWGGNGGGWGNGNGNGWGGGDVVTCHSNGHRQEYCDARIRRGVRLIRQDSRSACIEGQSWGWDRRGIWVSDGCRAQFQVN
>LR134324.1|VEF33463.1|362621_363293_-|two-component-LuxR-family-transcriptional-regulator
MLTRIAIADDHPLILLGTRIVIEAGGRHRVVAEARCAESLMSILAEEVVDLVVTDFSMPTGGRSDGQSMLQALSRNYPKVPVILVTMVTNATTLNMAMRTGVRGLVCKSSGVDGVRKAVDAVLSGGIYLDPELAPCLQDSGRERSLSVLSPKELEVLRLYVSGPSITEIAGQPRRTVSTISRQRISAMRKLGISNDAELFAYAFEERLGNAGGMASGAANGSP
>LR134324.1|VEF33464.1|363543_364251_+|Uncharacterised-protein
MVRFRRQSFEDLQGPLEPTPLAPATLPTAALPFVQQLRLHLASDSTPSRRPAHAAIIHGEATVCWLDARNDRMMTTAPAPITLTLLQRLLRDEDPPLSLVPVTQDVFMQRATVSSNIPLRPTLWNVGLSTADHNAPMPTLHESAKLRLRRWPDFRILAHRPDHFRLCALLIKQGASVQACCDLLDLPRRTVQSFFNAAFLTAYAFPVVGEDAPVRPSPTDGLVNLWRQLRIRWSA

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Click the colored protein region to show detailed information

Crispr_ID: LR134324_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134324_3

1488965-1489067

Orphan

Consensus_repeat	Method
TGCGTGTGCCAACCAAGGTTGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134324_3

>merge|LR134324|3|1488965-1489067|CRISPRCasFinder
TGCGTGTGCCAACCAAGGTTGGCACCTGCCGGGGCGAATGGGGCCTGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGATTGTGTGTGCCAACCAAGGTTGGCA

>LR134324|3|3|1488965-1489067|CRISPRCasFinder
TGCGTGTGCCAACCAAGGTTGGCA	CCTGCCGGGGCGAATGGGGCCTGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGAT
TGTGTGTGCCAACCAAGGTTGGCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134324.1\|VEF35038.1\|1495887_1496568_-\|electron-transport-protein-SCO1/SenC	unknown	unknown	gnl\|CDD\|239266
LR134324.1\|VEF34998.1\|1486351_1488670_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
LR134324.1\|VEF34979.1\|1483160_1483502_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF34952.1\|1480564_1481122_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF35013.1\|1490869_1492180_-\|L-sorbosone-dehydrogenase	unknown	unknown	gnl\|CDD\|225044
LR134324.1\|VEF35018.1\|1492172_1492613_-\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|226695
LR134324.1\|VEF35027.1\|1493381_1495148_+\|extracellular-serine-protease	unknown	unknown	gnl\|CDD\|173789
LR134324.1\|VEF34993.1\|1485784_1486174_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF34962.1\|1481640_1482081_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF34983.1\|1483725_1485231_+\|MG(2)-Chelatase-family-protein-/-ComM-related-protein	unknown	unknown	gnl\|CDD\|223679
LR134324.1\|VEF35047.1\|1496913_1497549_-\|cytochrome-O-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131889
LR134324.1\|VEF34967.1\|1482123_1482462_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF34973.1\|1482572_1482971_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379733
LR134324.1\|VEF34988.1\|1485256_1485643_-\|NUDIX-domain	unknown	unknown	gnl\|CDD\|240041
LR134324.1\|VEF35007.1\|1490075_1490738_+\|exopolysaccharide-synthesis	unknown	unknown	gnl\|CDD\|368723
LR134324.1\|VEF35043.1\|1496579_1496912_-\|cytochrome-O-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
LR134324.1\|VEF34957.1\|1481206_1481578_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF35023.1\|1492721_1493132_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF35003.1\|1489092_1489926_-\|hydrolase	unknown	unknown	gnl\|CDD\|182509
LR134324.1\|VEF35032.1\|1495147_1495726_+\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134324.1\|VEF35038.1\|1495887_1496568_-\|electron-transport-protein-SCO1/SenC	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	1.12726e-50
LR134324.1\|VEF34998.1\|1486351_1488670_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.14236e-22
LR134324.1\|VEF35013.1\|1490869_1492180_-\|L-sorbosone-dehydrogenase	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	2.18476e-95
LR134324.1\|VEF35018.1\|1492172_1492613_-\|Predicted-membrane-protein	gnl\|CDD\|226695	COG4244, COG4244, Predicted membrane protein [Function unknown].	1.41181e-11
LR134324.1\|VEF35027.1\|1493381_1495148_+\|extracellular-serine-protease	gnl\|CDD\|173789	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.	2.19899e-105
LR134324.1\|VEF35043.1\|1496579_1496912_-\|cytochrome-O-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	2.63023e-34
LR134324.1\|VEF34983.1\|1483725_1485231_+\|MG(2)-Chelatase-family-protein-/-ComM-related-protein	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
LR134324.1\|VEF35047.1\|1496913_1497549_-\|cytochrome-O-ubiquinol-oxidase-subunit-III	gnl\|CDD\|131889	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	1.3838e-100
LR134324.1\|VEF35003.1\|1489092_1489926_-\|hydrolase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	1.03149e-178
LR134324.1\|VEF34973.1\|1482572_1482971_-\|Uncharacterised-protein	gnl\|CDD\|379733	pfam15588, Imm10, Immunity protein 10. A predicted immunity protein with a mostly all-beta fold and a conserved arginine residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a Pput_2613 deaminase domain. The protein is also found in heterogeneous poly-immunity loci.	1.91628e-17
LR134324.1\|VEF34988.1\|1485256_1485643_-\|NUDIX-domain	gnl\|CDD\|240041	cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.39043e-19
LR134324.1\|VEF35007.1\|1490075_1490738_+\|exopolysaccharide-synthesis	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	4.2488e-43

>LR134324.1|VEF34998.1|1486351_1488670_-|TonB-dependent-receptor
MNTPPTTRLALAIIAATTAPAYAAETHDAALDTPTTLNALQVIATPRGAAVAPTQVVGPNRYIIKAEDLDAMVTGSNGLAMLKQVPGASYTATDGLGLDISATSLFVRGFRMNEMGITFEGVPLNDNGFLSLTGTSVVNVGVPDGIGAITVSPGGAPVSVFSSSVNGGSLEYRLRDLQDTPSLRVKQGVGSNSTLVTTVSGQSGQLGEHGPKVLVDLQRVSADKYQGEGTQNFLRGDLKLQQEVAWGDVTVFLSDSKAKVWGYNNISFDMIRKLGWKADIFYPDYAWAYYVASPENADKSCGAYTCGELSGLIPYDTGQSTRDRVSSINHRFQISPALSGNVQLYNANSHTQATLTDPNVPSPNGAPFSEQVQTPRLNRLGGMLNLQFETGAHTVTAGFWQEKSKAAAKTEWYQQPLLGEGPPLKATGPFDVYGPAFKTDNASSWVTRSRQFYLQDDIVLNDTLKLGVGFKAVDFRTSGGGLGDAKDRPVNGTLRAKSNFLPHVSLFWSPTESTDAFIDLANTMNGYRVAQRGNIGYTASAWTITDQEEFDRVAGTLRPEKNWNLTVGASHRFDRLTITGDVFYNDIRNRLLSAAIGTQFAQINTVRLMPKMHVIGADLGITADLSDHLQFYQGVAVARSYYDSDFVVGDTVYPTKGNAQPGYPQISLVSDLSAHFGDWRFGATSTSYLRQPFTYENDIRVPTFWQVNTYAAYRFGADSAVPGLELRLDVSNLFNRHNIGTATIAGSSFSGDYQTLQRSAPRQLMFSTSMAF
>LR134324.1|VEF34993.1|1485784_1486174_-|Uncharacterised-protein
MLLGHPVGMAQHNPRTPLFGIRGPGRPRQALSVAPAIDLQGEYQFWQVYERVVRPLPGGGLRRAWLVCQKVYRDRLRFPHDTREAALARVLFGSNSTPERAAELQDLFGLVSRRMASVAVRRQAPIPGK
>LR134324.1|VEF34988.1|1485256_1485643_-|NUDIX-domain
MLLFRYHDEHHAPFWATPGGELLPGEGYADAARRELREETGLDLPIGVRLEKRDAVYAVARSTPARWLEEYFLVRSPNQPDIQRDGWTEEENATIRAWKWWRVEEMREQPASLFKPEWLPDLFERVPA
>LR134324.1|VEF34983.1|1483725_1485231_+|MG(2)-Chelatase-family-protein-/-ComM-related-protein
MSLALVHSRARAGVDAPLVRVEVHLSGGLPATQIVGLAETSVRESRERVRAALLCARFDFPQRRITLNLAPADLPKEGGRYDLAIALGILAASGQVDPQSLLQYEFLGELGLTGELRPVAGALPAAIAAADAGRILVVPPGNAAEAALAEHADVRVARTLLECCAGLGNPRLLPPVERVDTTPLPLPDLADVRGQAHARRALEVAAAGGHHLLLIGSPGCGKTLLASRLPSLLPDTEEAEALQLAAIASVSGEGLDPRRWRQRPFRAPHHSASAAALVGGGNPPCPGEISLAHHGVLFLDELPEWNRSALETLREPLESGHIRIARAARSVQYPARFQLVAAMNPCPCGWAGDRSNRCLCSDERINRYRARVSGPLLDRIDLHISVARMDAVELRESTPLGEPSAAVRARVEAAHAKQQVRGGLNAHLPPAALRACTRLSEADQDMLEQAIERLQLSARAMHRILRVARTIADLAGCETIQTAHLAEAIGYRQLDRGKAST
>LR134324.1|VEF34979.1|1483160_1483502_-|Uncharacterised-protein
MQCIRVLMALSLAMGLPGCRDEVESSTYPIGQTGETCTAYKGFERQPPEVVVAELAKRGLDSSRLVHRTVCGPITSWDILPAGASIDRIPPPDAYVSVHLLEDGSVSVSTDRP
>LR134324.1|VEF34973.1|1482572_1482971_-|Uncharacterised-protein
MYRFKAEVVSMEEDDYCIVVGLADSSTNPSRYVVLQNAKAYDDQDEELGMAHAHIEVGGGLEPCYGGLVHISLRRMELELSLSESAQRKLGITGGIAVTLKTLENGSKLEAALRKICVAEGIPLDLNSSGRD
>LR134324.1|VEF34967.1|1482123_1482462_-|Uncharacterised-protein
MKADEFVSAIQRYVLESSVGSTISNLAYPPGRRVAPDLLARSEWFNSLSAVEADMLRAVAGEAARSAVFGFLVVLDGTRVIDSEKGTFELHHVGREKRLANPSGIDLHDLLE
>LR134324.1|VEF34962.1|1481640_1482081_-|Uncharacterised-protein
MKLNFVADCDWESHVGRIKSHYVERSATFESRSYGNEVASVALLFVCRDPELDFKRRVQFRRKKAEFYTDVMLDLPTIVPLSMKEKMRYVSRELLEQLAEQLGRVKFKDFDHARFLMDLKVWLEDIDSRYNGQSSGAWHYASGEAS
>LR134324.1|VEF34957.1|1481206_1481578_-|Uncharacterised-protein
MQRYLCDLDVTGNLSAGRDVEQLLSDRYELDQRVIRFVSIEQANLNAWRVRLCEVFDNGAPGFIDVYEFEAVDPDHPFGTEWTFDSVDGALRFARDVLRTSQGRYVNQGLIQDEYKDRYHPEW
>LR134324.1|VEF34952.1|1480564_1481122_-|Uncharacterised-protein
MKTRRLIWIALGMLPAAAGFPAGNPRVDFVSKAFRDGSFIPHVYSERDFLRRYGDGEMVVDAAGLIRRRYLDPTTRLEVLITSNPDVAPQFRTIDEIRVSSISAAQPTAGRTESLRGMKLKGVAMGDPASEAIGTARRYGQGKTEQATLGGFDVERTCGFSEGGSSICFYVRDGKVVAMALGFGP
>LR134324.1|VEF35003.1|1489092_1489926_-|hydrolase
MDMGRRQSTIELVAIDMDGTLLDPSHQLTPRARNAIAQARALGVHIVLTSGRPVPGLAPYLHELGITGNDDYCIACNGGLVQRIGTRETVVEYPLSFDDFLFCEQVARDLGVHFQALDSQRMYTPNQDISYYTVADSHLSRMPLSYRRVEDMDPSMSFIKLMMIDEPEVLDAAIARLPSALTERFAVLKSAPFFLEVFDHRAGKGPSLQKLAEHLGIDRANVMAIGDQENDLTMLQYAGTSVAMGNAIDAVKAVARFETSSNADEGVARAIERFVLQ
>LR134324.1|VEF35007.1|1490075_1490738_+|exopolysaccharide-synthesis
MTYRAPETNDSAPLAQQIEQMIDELPGDQVSVGTLLSALGDEGLLLVVILLSAIFIIPVSIPGLSTVFGASILLIGLSRVRNRPLWVPQKLARRGIATDKLKANLGRALKWVHRMERLSRPMRLAVMVRSKKMMRLNNLMLVFATLLLMAPAGPIPFSNTLPALALMSFAIGFIQRDGAAVAAGYGFVVATVVYFGVLLGGVGFAAESVFSGFRSSTAEL
>LR134324.1|VEF35013.1|1490869_1492180_-|L-sorbosone-dehydrogenase
MAKHILPTVAALALAVTLSACAGKAEYHPADQSGPQPPLPKPANFLMPPMQVPKGVGWADGQAPTVAEGLKIERIAANLQHPRRLLTLPNGDVLVVEGNGPGEEPVTTPKQWIAGKVKARSGKAGKGGNRVTLLRRSPGTNTWTQHVYIEGLHSPFGIQLIGDTLYVANTGNIMQYHYVPGETRMSDKGREFTDLPSTINHHWTKELLASRDGSKLYVGVGSNSNITENGLAVEYRRAVVLEVDVATRGSRIFASGIRNPTGLDWEPSTGQLWAVANERDEIGADLVPDYLTSVKEDGFYGWPYSYYGQHVDERVQPQRPDLVAKAIVPDYAIGSHVAPLGLLFYTGQALPAQYHGGAFIGEHGSWDRSPLSGYEVVYVPFKDGKPTGRPQTVVSGFTSKDEKTLMGAPVGMAMDAEGALLVADDVGDVVWRVSAK
>LR134324.1|VEF35018.1|1492172_1492613_-|Predicted-membrane-protein
MVNPLAQAHRGLGTTLFSLLNPIPFGFFVGALIFDAIYLNSAEVMWGKAAAWLITFGLLIAIVPRLINLFAVWRRNGTATRIDRIDFFLNLVAVVLAIWNAFVHSRDAYAVAVPGTILSALTVALIALGLILLSLQPPVLQGGRHG
>LR134324.1|VEF35023.1|1492721_1493132_-|Uncharacterised-protein
MKNGRQRARARADQTPLSVAAIRKVVLSVHTRSHDYGDDADISELLPELAAFGITTVKPLRLLMKKHRRALLQEERIVMRRAETLHLRTEWRHGGIDVHANTSRYAIGGLVRTSMEHEFGFETMLPFHAVREDEPA
>LR134324.1|VEF35027.1|1493381_1495148_+|extracellular-serine-protease
MKRHTQRSAPPRSARLALATALVLGSLAATAQAQQADPLAGIQWHLLNTGQTVPADTLPVAGNDLNVDGLFRNGIRGQGVTIAIVDDGLQIAHPDLAANVAAVAGKNFTNGSNNPTPTNPDVDNHGTMVGGIAGAVGANNLGVRGVAPAATLKGFNPISRSALGNQQSNIEYAWWDGAESADVQVFNNSWGAGPGNPNLPLAYSENTIRSYEQALSGTRGGRGGIYVKSAGNNFNNASISQTQDVCTTDTKNRNTGCVPAGRDPRNNLFNVITVGAVRADGVRSSYSSTGSALWVSAFGGEYGLQAQYAPGLVARAYDPAIVTTDVTGCAQGSNKNTNRQNTLDSNLSAIDSTCNYTAKMNGTSASAPMVSGVAALVLEANPNLSYRDVKYILATTATRNHPNQPAVTLADGRTLVPGWTVNAAGRAYSNWYGFGVVNAARAVQVAENFQSLGTLVDSGWRNTTRTVAIGNTSAAAARLTFQLANGARNIESVQLGFRVNHRNTRQLQFVLVSPSGTRSVVQPAFTAIGSGTGGAQSNFTSWDLLSSNAFLDENATGTWTLEVTDMGQAATAASRGNLEFFKIRVLGH
>LR134324.1|VEF35032.1|1495147_1495726_+|Uncharacterised-protein
MMKTTILLSTLAFAAMTSPAWAQSSGQTPPAKTLSTVDAQELKASATGRSFDVGGTRFQLSPSATVKQASGGQFTITPQAAATTSSRTKRSLDGAAAAPADAGAGKFAAAVSRDGAPVVATSRVKVFFTDAASAQRAATATGGTVVKVSKASGQAIVEYPSVNAALDATTRLLSTAGIRATEPDVVQWEETK
>LR134324.1|VEF35038.1|1495887_1496568_-|electron-transport-protein-SCO1/SenC
MKGIAFPHRGLRLAAGLLLGLLAGCSSQSRMDFYAKDIACEELGQQWSMPDSHGTVRGPKDLQGQVTYLFFGFTSCPDVCPTTMVELSQVKHLMGKDADQLQVVFVSVDPARDTPEVARTYVEAFDPKAIALVGNDAQLAAMASDFKAFYEKEPGQVPDTYTMSHIAGGYVFDRQGRLRLFAPYGMPVEKLFSDVQRLLLEPGHPAAGNDALASCHLKHSGTLAAR
>LR134324.1|VEF35043.1|1496579_1496912_-|cytochrome-O-ubiquinol-oxidase-subunit-IV
MAHVETSRAGNAHGSTKSYLIGFVLCALLTVVPFALVMNPVLSRPLTLFLLVGFAVAQILVQLVYFLHMDRKSEGGWNLASFVFTLVILFIVVALSVWIIWSMHYHMMIN
>LR134324.1|VEF35047.1|1496913_1497549_-|cytochrome-O-ubiquinol-oxidase-subunit-III
MNLLTRPELASDTQAHEDHHEHDHGHEQGGMKVFGMWVYLMSDLVLFGSLFASYAVLSTAYAGGPTGKELFSLPFVMAETFLLLVSSITYGQAVLAMHRHDASAVLRWLGVTFVLGASFIGMEIYEFSHLIHEGAGPSTSAYLSAFFALVATHGLHVASGLIWMAVVMHQVYRRGLTPTNITRVSCLSLFWHFLDLVWICVFTFVYLIGAF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LR134324_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134324_4

1946175-1946288

Orphan

Consensus_repeat	Method
TGGTGGGTGCCGACCGTTGGTCGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134324_4

>merge|LR134324|4|1946175-1946288|CRISPRCasFinder
TGGTGGGTGCCGACCGTTGGTCGGCACTTCCACTGTCCTTGTTCTGGTAGGTGCCAAGCTTGCTTGGCACGGGGTCTGGGTCTGCTCTGGTGGGTGCCGACCGTTGGTCGGCAC

>LR134324|4|4|1946175-1946288|CRISPRCasFinder
TGGTGGGTGCCGACCGTTGGTCGGCAC	TTCCACTGTCCTTGTTCTGGTAGGTGCCAAGCTTGCTTGGCACGGGGTCTGGGTCTGCTC
TGGTGGGTGCCGACCGTTGGTCGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134324.1\|VEF36605.1\|1939389_1940001_+\|phospholipid-binding-protein	unknown	unknown	gnl\|CDD\|176643
LR134324.1\|VEF36655.1\|1950894_1951209_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF36610.1\|1940102_1940636_-\|NADPH:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|223508
LR134324.1\|VEF36620.1\|1941616_1942411_-\|UDP-diphosphatase	unknown	unknown	gnl\|CDD\|234712
LR134324.1\|VEF36659.1\|1951312_1953358_+\|TonB-dependent-transport-protein	unknown	unknown	gnl\|CDD\|238657
LR134324.1\|VEF36626.1\|1942633_1944043_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|181884
LR134324.1\|VEF36600.1\|1937309_1939379_+\|TPR-repeat-containing-protein	unknown	unknown	gnl\|CDD\|274350
LR134324.1\|VEF36589.1\|1935392_1936211_+\|transmembrane-acetyltransferase	unknown	unknown	gnl\|CDD\|153251
LR134324.1\|VEF36643.1\|1947500_1947878_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF36615.1\|1940715_1941543_-\|heat-inducible-protein	unknown	unknown	gnl\|CDD\|379548
LR134324.1\|VEF36667.1\|1956069_1956639_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|376292
LR134324.1\|VEF36671.1\|1957575_1958463_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF36669.1\|1956671_1957298_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|376292
LR134324.1\|VEF36595.1\|1936218_1937253_+\|putative-hydrolase	unknown	unknown	gnl\|CDD\|223506
LR134324.1\|VEF36637.1\|1944725_1946156_+\|Ammonium-transporter	unknown	unknown	gnl\|CDD\|182630
LR134324.1\|VEF36648.1\|1948730_1949552_+\|N-acetyl-anhydromuramyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
LR134324.1\|VEF36631.1\|1944364_1944703_+\|nitrogen-regulatory-protein-P-II	unknown	unknown	gnl\|CDD\|223424
LR134324.1\|VEF36663.1\|1953473_1954535_+\|two-component-system-sensor-protein	unknown	unknown	gnl\|CDD\|226370
LR134324.1\|VEF36665.1\|1954527_1955976_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
LR134324.1\|VEF36652.1\|1949619_1950786_+\|MltA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225377

Protein	Function_ID	Function_description	E-value
LR134324.1\|VEF36605.1\|1939389_1940001_+\|phospholipid-binding-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	8.00287e-51
LR134324.1\|VEF36610.1\|1940102_1940636_-\|NADPH:quinone-oxidoreductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	3.75171e-32
LR134324.1\|VEF36620.1\|1941616_1942411_-\|UDP-diphosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	2.11512e-85
LR134324.1\|VEF36659.1\|1951312_1953358_+\|TonB-dependent-transport-protein	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.99107e-55
LR134324.1\|VEF36626.1\|1942633_1944043_+\|glutamine-synthetase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
LR134324.1\|VEF36600.1\|1937309_1939379_+\|TPR-repeat-containing-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.71116e-23
LR134324.1\|VEF36589.1\|1935392_1936211_+\|transmembrane-acetyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.8727e-38
LR134324.1\|VEF36615.1\|1940715_1941543_-\|heat-inducible-protein	gnl\|CDD\|379548	pfam14302, DUF4377, Domain of unknown function (DUF4377). This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	8.74237e-27
LR134324.1\|VEF36667.1\|1956069_1956639_+\|superoxide-dismutase	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	1.19228e-41
LR134324.1\|VEF36669.1\|1956671_1957298_+\|superoxide-dismutase	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	6.47492e-51
LR134324.1\|VEF36595.1\|1936218_1937253_+\|putative-hydrolase	gnl\|CDD\|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	5.73931e-29
LR134324.1\|VEF36637.1\|1944725_1946156_+\|Ammonium-transporter	gnl\|CDD\|182630	PRK10666, PRK10666, ammonium transporter AmtB.	1.24415e-174
LR134324.1\|VEF36648.1\|1948730_1949552_+\|N-acetyl-anhydromuramyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	2.4771e-51
LR134324.1\|VEF36631.1\|1944364_1944703_+\|nitrogen-regulatory-protein-P-II	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	3.60313e-56
LR134324.1\|VEF36663.1\|1953473_1954535_+\|two-component-system-sensor-protein	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	1.14856e-110
LR134324.1\|VEF36665.1\|1954527_1955976_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
LR134324.1\|VEF36652.1\|1949619_1950786_+\|MltA-domain-containing-protein	gnl\|CDD\|225377	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane].	1.82078e-114

>LR134324.1|VEF36637.1|1944725_1946156_+|Ammonium-transporter
MKMRLLTGWQARFHLVCLLMLLSALAAGAWPGSAHAQAQVSPLPSESVAVEPLHDAAATAAAPAVAEAAAAYDRGDVAWMLTSTLLVLLMVVPGLALFYGGLVRSKNVLSVLSQILVVFSLVLLLWVAYGYSAVFSAGNPFFGSFTEFAFLKGFTPESVGNTPIKGLPDYLFVAFQSTFAGITTALIVGAFAERIKFRAVLLFSALWFTLSYIPMAHIVWGGGYLGELGAIDFAGGTVVHINAGVAGLVGAWFVGKRLGYGQTALKPHNVPFTYIGAMLLWVGWFGFNAGSAAAADTVASLAFLNTVLATAAAVLGWTLVEAIGKGKPSALGAASGAVAGLVGITPACGTVGPLGAIVIGFVAGVVCVWGVTGLKRLLKVDDTADVFGVHGVGGIVGAILTGVFSAQSLGGTKADLDIAHQVWVQVVSVGLTVVWSAVMTAVILLVVKVVVGLRVTEEAERTGLDVTSHGESAYEA
>LR134324.1|VEF36631.1|1944364_1944703_+|nitrogen-regulatory-protein-P-II
MKLISAIIRPFKLDEVREALSDAGVSGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKIETVVTDERADAVIEAIQSSAGTGKIGDGKIFVTAVEQVIRIRTGEIGADAL
>LR134324.1|VEF36626.1|1942633_1944043_+|glutamine-synthetase
MSVENVEKLIKDNQIEFVDLRFVDMRGVEQHVTFPVSIVEPSLFEEGKMFDGSSIAGWKGINESDMVLLPDTTSAYVDPFYADPTIVISCDILDPATMQPYGRCPRGIAKRAEAYLKSSGIAETAFFGPEPEFFIFDSVRFANEMGNTFFKVDSEEAAWNSGAKYDGANSGYRPGVKGGYFPVPPTDTLHDLRAEMCKTLEQVGIEVEVQHHEVATAGQCEIGTKFSTLVQKADELLRMKYVIKNVAHRNGKTVTFMPKPIVGDNGSGMHVHQSLSKGGTNLFSGDGYGGLSQLALWYIGGIFKHAKAINAFANSGTNSYKRLVPGFEAPVMLAYSARNRSASCRIPWVSNPKARRIEMRFPDPIQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDLPPEEEKLIPQVCSSLDQALEALDKDREFLKAGGVMSDDFIDGYIALKMQEVTKFRAATHPLEYQLYYAS
>LR134324.1|VEF36620.1|1941616_1942411_-|UDP-diphosphatase
MSDLLSALLLGILEGLTEFLPISSTGHLLIAQHWLGARSDFFNIVIQAGAIVAVVLVFRQRLLQLATGFNQRENREYVFKLGAAFLVTAVVGLVVRKAGWSLPETVSPVAWALIIGGVWMLLVEAYTARLPDRDQVTWTVAIGVGLAQVVAGVFPGTSRSASAIFLAMLLGLSRRAAAAEFVFLVGIPTMFAASAYTFLEMAKAGQLGSEDWADVGVAFLAAAITGFVVVKWLMGYIKSHRFTAFAIYRIALGAALLLWLPSGS
>LR134324.1|VEF36615.1|1940715_1941543_-|heat-inducible-protein
MNRKLTLLLPLALMAACSQTPAPAGTGGDDVAPAAAKAADQQTLAHLDAQRLQSQHWLLQQATGADGKRIDALFAREDKPVTLDFADGRLSVSNTCNRMGGGYTLADGKLTVSAMASTMMACTDKALMALDEAVSSRLQGELKAEQDADGKLTLTNAKGDVLVFNPEPTAETRYGGAGETVFLEVAAKTQKCSHPLIPDYQCLQVREVKFDDKGLKQGEPGKFENFYGTIEGYTHEDGVRNVVRVKRYEVKNPPADAPSQAYVLDMVVESAIEKK
>LR134324.1|VEF36610.1|1940102_1940636_-|NADPH:quinone-oxidoreductase
MKILAISGSARRQSTNTALLVALRTIAPPGMEIEVYAGVGELPVFSPDLEGTDEPCSVTRFKAAIARSDGVLVCSPEYVRGIPGGLKNAIDWLVSGDQIVGRPIALVHASHRGEDMLQALRAVLSTVSAAFSTTLFLRVPVLGLEPEEIFEVLQSEVHRAEADAFLAGFAVYCRSIA
>LR134324.1|VEF36605.1|1939389_1940001_+|phospholipid-binding-protein
MQLSSHSLTNGAPIDREFAAGDAAGFAPDRNPHLAWSDVPEGTRSFLLVCVDPDVPTVPETVGRTDMSVPRDQPRCDFVHWVMADIPASVREIAAGSCSDGFVVKGKSKPAGPAGSRQGLNDFTGWFAGNPDMAGDYLGYDGPYPPFNDERLHHYFFRVFALDVASLQLPARFTAANAYRAMHGHVLAEAALHGTYTLNPALG
>LR134324.1|VEF36600.1|1937309_1939379_+|TPR-repeat-containing-protein
MQDQIIQALRQNEADQAVQLAQAWTRDEPGQAEAHRWLALALQQQGKAEDAMEALQQALQLAPDNAQLHLQHAGLLLALRQFDGAGEALTRTTGLDPNAFAAYLMQAHLAIGRNDFDEAQRLSTLASRVEPDHPELLTIDGMIALRRDDADRALTLLSAANQAQPNDIRVLYALGFAYLGKNMLAFAEQAFRRVLELNPTIASLHGLVVQLAMRQGNLDAAAEAMQIALQQQGLDTPSMRRLAGELALRSGQPLQALEHLLPLLESLPDDRDVLQLLLMSWQRLGREDEARARLDAALEQHPQLHDLWLARLAVEEVGSATAAATVERWMDAMPGHLPALEARLRLHDMVGEHAQAEAIAERIVNLEPGRVSGETRLVEGLLQRDPAAAVARVQALIDMAPEGHRADLRTWLGEIQDRAGQHEDALQTWLALQADQAPQRLPLPPQAKAPPSWPDKGEIDGDATSAPIFLWGAPGSGVERVATGLAAASPVLRSDRYTSNAPDDAFQNYHTLQDLASGVLTPERLVQRWREQLPSRGVQDDAIIDWLLWWDNALLWALRPQLPQGRLLVVLRDPRDMLLDWVAYGAAAPLAMTSLAEASEWLARALAQVAALHEDDLYPQVLLRIDQIGNDPQAMAELLGRLFERPMPPAAQLGAPRFPPGHWRNYRDVMSAAFAKLTPIAVRLGYPEE
>LR134324.1|VEF36595.1|1936218_1937253_+|putative-hydrolase
MALIPPPVLDAGTPTLHAADYQPPRWLRNPHLQSMLSSSRMRLQRGLLLLAATGAISEELILDGGDGVRLQGWHSHVEGREPKGMALLLHGWEGSAESSYMRMAAARMLEQGFDVVRLNFRDHGNTHHLNPGIFHSNLIDEVVHAAGDIAQRWPQLPLVAAGYSLGGNFVLRLALRAPAAGVPLLRVASVCPVLDPALTMESIENGPAMYDWYFRRKWAGSLRRKRDLFPELSDCDDRVLKLDIRALTAWLVERHTSFGSLQAYFDGYSIAGDRLSSLQVPADILMAQDDPVIPYATFSDWQLPRNAHLETACWGGHCGFLENWRGDGFSERWVAQRLQRVLQG
>LR134324.1|VEF36589.1|1935392_1936211_+|transmembrane-acetyltransferase
MTALRYRARMTSPTPAPRGGVARVCRYLYRVPLLLVHIVVFLPLILIGMLRPWGELRVGEATLGAKVVNWWQGGLMWIFGFRLVQIGRPLPGAVLFVANHVSWVDICILHSQRMMGFVAKREIASWPLVGWLAARGQTIFHQRGNTESLGGVMQVMADRLREGKAVGVFPEGRTRGGHEVGPFHARIFQAAVETGVPVQPVALVYGLKGDAQTIVAFGPGESFFANFLRLLGEPARRAEVHFLAPIGAQDLEGRRRIAETSRARIVAAMSTQ
>LR134324.1|VEF36643.1|1947500_1947878_+|Uncharacterised-protein
MTTALVGGVAGQGAGQAASNALAPYAAHFIGSTLDPNHGSDPNATLQLLSHAVLGALLAEADGGSAGTGAVSAAGGELAAKVLTNTLTGGDPSKLSPEQKEMVLALSQAVGALAGGLSEQKKVTK
>LR134324.1|VEF36648.1|1948730_1949552_+|N-acetyl-anhydromuramyl-L-alanine-amidase
MTAPQFSSDPDEAKNHGCSHGYNSSMISPRLLASTLLALALSACTATAPVQHNPLATWVLSPNQNARTPVIIVIHHTEQKSVQQSLHTLRTANSGGPVSAHYLIGADGHRYQLVADERRAWHAGAGRWGTITDLNSASIGIELDNDGRSPFSAAQIESLIVLLRDLTTRLNIPPRQVIGHADLAPTRKQDPSRFFPWQQLAEAGFGVWPRAADGAAPEGFDAWNALARFGYPLDNRDATVAAFHRRFRGRDDLPKTLDAEDARILHSLLLQTP
>LR134324.1|VEF36652.1|1949619_1950786_+|MltA-domain-containing-protein
MIDSATFFKRKHWTLLAAAVLAGCATTAPRTGSEAPTPTSPPAATYAKVGWKALPAVSDSDLQAGFVAWRSSCARLKNDAVWAKPCATAAAVSDKNPAAIRQFLQRDLDAYALRAGGHQADGLITGYYEPIYPGSLTRTDKATVPVYGTPDDLVVVQLDSLYPELKGKRLRGRVEGKVLKPYDDAGTIAAKGAKAPVLAWLTDPMDLQLLQIQGSGRVRLADGKQVRLAYAEQNGHPYRAIGRWLVDQGQLKKEDVTMDAIRAWARANPARVPELLRSNPSYVFFVRNPDSPEGPRGSLNVPLTAGYSVAVDRTVVPLGSLLWLSTTRPDGTPVVRPVAAQDTGGAIAGEVRADLYWGSGDAAGKLAGDMKQKGNIWMLWPKGVPLPN
>LR134324.1|VEF36655.1|1950894_1951209_+|Uncharacterised-protein
MTYAKHNAKPGAKSAAKKYYKHWAESGLGKGNVLMEARGDKIVRQVEIYGTKMVWADEHAHSDDRFLLADQPVSFLDFDEDDEISAREFEAAWKKAREATGYPV
>LR134324.1|VEF36659.1|1951312_1953358_+|TonB-dependent-transport-protein
MKTPTLVAALAAAPFAPEAFAQAADAALTLGKVQVHQHGEGQLSAHQVLTSVDVLGADQIENRNVSHSWELLGQMPGIQLTETRQGAESGKVSFRAFNGEGYLNAIKTLIDGIPSNVNSGNQRFIDMLFPLDISYIEVVRGTNDPRYGLHNIGGNVNFGTRQGGSYTDARLAYGSYNTRDAQLAIGREANGFAQNYFVGTQASDGYRDHDTSRKYSLGGKWFFGTLDEGLRVGLTARAYHHEADEPGFMTAEELRTHRRGSELRNGNDGDDRDMRQIAAHVDLKLSDALTFGTRLYYNRYEDDRRVTFSDPPTGNLPRQRRVWDERQTGLLSTLTWQASSTLTVEGGLNYEQQDNGYIRERYAYAEPTDYSQPPARVQNDDRHSFDNWGAYVQAIYQPAEAWKIVPAYRIDRFSGSTHLMNGITARLQDYGSIGQPKLSIIHSLGQTTHVYANWGRTFQVLTGSTAPAYLTPGQAPMQPSTNTGMELGLKFQPFQGAQARLAVWQQDAENEVSNMPATGTTVTLGKTRRRGVDAQLSLQLGDDWTVWASHAYQEAKITRDDRDAGISLHGREVAATPRHISNLGVDYRASDALRLGLQARAQGDYYLEERNVAGKFGGFAVLDLSAAYQLTPRFSVDLQLKNVTGRQYAYAWYDSFFWDSARPMFSPAPGRSVFVGLNMKL
>LR134324.1|VEF36663.1|1953473_1954535_+|two-component-system-sensor-protein
MSDPAPPPSLDALGTPLAWAGADGCIAGCNPAFARWLGVSVRRLLGRPLAALEVQGEALAHFLARDERDSLRLNRLALAVPGEAPRFAEGWMSRRDDGGWLLEAHPVDEFPGLDPTQALPSALSAALKGLAHELRNPLAGLKGAAQLLARRAAQRDASERELIELIGSEIERLNGLLDQLLSPAPAAPHAELNIHAALERVLRLAENEAGWAVRLQRDYDPSIPEFHGDADRLTQAVWNLVRNAIQAGAGSITLRTRVEHGVRIAEQLHTLALRLEIADDGRGVPEELAEHLFLPLVSGRAEGTGLGLALAQQVAREHRGTLTYRSRPGHTVFTLLLPIGNGAAPAEEAPRDV
>LR134324.1|VEF36665.1|1954527_1955976_+|nitrogen-regulation-protein-NR(I)
MSESPTTAQRIWVVDDDRAVRFVLCTALREAGYQVVDFDSAAPALQALSAGPPPALLFTDVRMPGDDGLVLLDKLKAALPQLPVVVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAQRVLPAVAPALAAPSPAAETPGDQPPQLVGDTPPMRALFRAIGRLAQAPLAVLITGETGTGKELVANALHRESPRAQGPFVALNTAAIPAELLESELFGHEAGAFTGAQRRHVGRFEQANGGTLFLDEIGDMPLPLQTRLLRVLAQGEFFRVGGRELIRVDVRVVAATHQDLEGLVAQGKFRADLLHRLDVVRLQLPPLRERREDIAQLASTFLAAAARRLDTPPKRLTAAALQALREHDWPGNVRELENVCWRMAALAAADTIGVADVDTALNRARGRRNSASAADPGQWEALLAEWARRQLAEGVEGLHAQVRERVDHALLEAALQITHGRRAEAAARLGLGRNTLTRKLGAGRRRGGH
>LR134324.1|VEF36667.1|1956069_1956639_+|superoxide-dismutase
MRLSFAILPLSAAVLLSACGSAPKKAEPTPPPPAVVSAAKQGEANLSPASASIVSGRIALMVEPGGIHITGLIGGLQPMQQAGFHIHERGDCSAVDASSAGNHFNPGGAAHGRAGTGKHHLGDMDNLRADAQGRANVDIHLKGVTLGGGAATDIAGRALVVHANADDYRSQPAGNAGVRIACGVIRVVR
>LR134324.1|VEF36669.1|1956671_1957298_+|superoxide-dismutase
MRLIHTSLFAAIAALGLAACNQQPAAPQTETPPAAPADGATTEPAATPAPAAAPAADASATAELAPTQGNETKGSVTFKVVDGKVHVTGQITGLKPGSEHGFHIHDKGDCSAPDGMSAGGHFNPGKQDHGNVATDPHHGGDMPNIKADDKGVATIDGPVSSNVNIGKGDDFDIIGRGLIVHADADDYKTQPTGNAGARLACAVIQKAP
>LR134324.1|VEF36671.1|1957575_1958463_-|Uncharacterised-protein
MSKPDPAMNALGVLALELAGGEIPRQAVLSAEQAGELAERVGRDLSKLVPQVAELDLVFAAAHFDPAEVLRPGWPIHRRLEELQMRAPGRNQGPRLLAFGTDAAGDVPLPFQADATLVGGGLRVVPFLLTGSDVATTNAVANALEETLLANGMAHADTALMAQNSFGARIEHARYFTVNDLAAMMSMQYDNQGLAALWPLIETAIMAPGEDEWLNAAPEPLLRYTHGEARMALFDPAGWCAYYNHSKNDCDRLQGIYEQFLMRQRQMAAVLEAHGVPVLFVHCEAGQDARELLAR

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Crispr_ID: LR134324_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134324_5

2631477-2631589

Orphan

Consensus_repeat	Method
ATCCGCGCGTGGTGGTTGCATCTGGTAGGCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134324_5

>merge|LR134324|5|2631477-2631589|CRISPRCasFinder
ATCCGCGCGTGGTGGTTGCATCTGGTAGGCGCGGACCTTGGTCCGCACGCTTTTGCCGGCCAGCGGCCGGCACTACCGGATCCGCGCGTGGTGGTTGCATCTGGTAGGTGCGG

>LR134324|5|5|2631477-2631589|CRISPRCasFinder
ATCCGCGCGTGGTGGTTGCATCTGGTAGGCGCGG	ACCTTGGTCCGCACGCTTTTGCCGGCCAGCGGCCGGCACTACCGG
ATCCGCGCGTGGTGGTTGCATCTGGTAGGTGCGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134324.1\|VEF37331.1\|2637779_2639054_+\|ribonuclease-BN/uncharacterised-domain-fusion-protein	unknown	unknown	gnl\|CDD\|179791
LR134324.1\|VEF37333.1\|2640124_2640907_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|213852
LR134324.1\|VEF37329.1\|2636776_2637112_-\|transmembrane-protein	unknown	unknown	gnl\|CDD\|378269
LR134324.1\|VEF37318.1\|2626960_2628040_+\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|240629
LR134324.1\|VEF37323.1\|2629942_2631403_+\|NAD(P)-transhydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|376743
LR134324.1\|VEF37327.1\|2634380_2636123_+\|secreted-serine-protease	unknown	unknown	gnl\|CDD\|173820
LR134324.1\|VEF37315.1\|2622741_2623677_-\|5'-3'-exonuclease	unknown	unknown	gnl\|CDD\|235591
LR134324.1\|VEF37328.1\|2636211_2636706_-\|L-asparaginase	unknown	unknown	gnl\|CDD\|223330
LR134324.1\|VEF37321.1\|2628942_2629527_-\|RNA-polymerase-factor-sigma-70	unknown	unknown	gnl\|CDD\|236367
LR134324.1\|VEF37332.1\|2639050_2639626_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|239264
LR134324.1\|VEF37330.1\|2637108_2637702_-\|Trp-repressor-binding-protein	unknown	unknown	gnl\|CDD\|179647
LR134324.1\|VEF37322.1\|2629625_2629946_+\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|378941
LR134324.1\|VEF37326.1\|2632816_2633911_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
LR134324.1\|VEF37316.1\|2623673_2624273_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
LR134324.1\|VEF37317.1\|2624586_2626908_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|377917
LR134324.1\|VEF37314.1\|2622190_2622745_-\|ADP-ribose-pyrophosphatase	unknown	unknown	gnl\|CDD\|239516
LR134324.1\|VEF37325.1\|2632259_2632757_+\|FeS-assembly-SUF-system-protein-SufT	unknown	unknown	gnl\|CDD\|213809
LR134324.1\|VEF37319.1\|2628160_2628613_-\|Protein-of-uncharacterised-function-(DUF3106)	unknown	unknown	gnl\|CDD\|378633
LR134324.1\|VEF37320.1\|2628616_2628946_-\|transmembrane-protein	unknown	unknown	gnl\|CDD\|378740
LR134324.1\|VEF37324.1\|2631663_2632083_-\|transmembrane-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134324.1\|VEF37331.1\|2637779_2639054_+\|ribonuclease-BN/uncharacterised-domain-fusion-protein	gnl\|CDD\|179791	PRK04214, rbn, ribonuclease BN/unknown domain fusion protein; Reviewed.	0
LR134324.1\|VEF37333.1\|2640124_2640907_-\|transcriptional-regulator	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	5.2307e-135
LR134324.1\|VEF37329.1\|2636776_2637112_-\|transmembrane-protein	gnl\|CDD\|378269	pfam09842, DUF2069, Predicted membrane protein (DUF2069). This domain, found in various prokaryotes, has no known function.	4.35149e-05
LR134324.1\|VEF37318.1\|2626960_2628040_+\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0
LR134324.1\|VEF37323.1\|2629942_2631403_+\|NAD(P)-transhydrogenase-subunit-beta	gnl\|CDD\|376743	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyzes the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.	0
LR134324.1\|VEF37327.1\|2634380_2636123_+\|secreted-serine-protease	gnl\|CDD\|173820	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	7.40336e-126
LR134324.1\|VEF37315.1\|2622741_2623677_-\|5'-3'-exonuclease	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	1.24835e-87
LR134324.1\|VEF37332.1\|2639050_2639626_+\|Thioredoxin	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	6.25819e-35
LR134324.1\|VEF37321.1\|2628942_2629527_-\|RNA-polymerase-factor-sigma-70	gnl\|CDD\|236367	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated.	8.91024e-65
LR134324.1\|VEF37330.1\|2637108_2637702_-\|Trp-repressor-binding-protein	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	1.4781e-60
LR134324.1\|VEF37322.1\|2629625_2629946_+\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|378941	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch. PNTB_4TM is the region upstream of family PNTB, pfam02233, that carries four of this transporters transmembrane regions. PNTB is the beta-subunit of pyridine nucleotide transhydrogenase. This family forms part of the Proton-translocating Transhydrogenase (PTH) Family.	2.89808e-33
LR134324.1\|VEF37326.1\|2632816_2633911_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
LR134324.1\|VEF37316.1\|2623673_2624273_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	1.01128e-53
LR134324.1\|VEF37317.1\|2624586_2626908_+\|thymidine-phosphorylase	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0
LR134324.1\|VEF37314.1\|2622190_2622745_-\|ADP-ribose-pyrophosphatase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	3.81267e-38
LR134324.1\|VEF37325.1\|2632259_2632757_+\|FeS-assembly-SUF-system-protein-SufT	gnl\|CDD\|213809	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	7.21641e-97
LR134324.1\|VEF37319.1\|2628160_2628613_-\|Protein-of-uncharacterised-function-(DUF3106)	gnl\|CDD\|378633	pfam11304, DUF3106, Protein of unknown function (DUF3106). Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.	3.66588e-21
LR134324.1\|VEF37320.1\|2628616_2628946_-\|transmembrane-protein	gnl\|CDD\|378740	pfam11859, DUF3379, Protein of unknown function (DUF3379). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.	0.000619951
LR134324.1\|VEF37328.1\|2636211_2636706_-\|L-asparaginase	gnl\|CDD\|223330	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis].	1.97276e-30

>LR134324.1|VEF37323.1|2629942_2631403_+|NAD(P)-transhydrogenase-subunit-beta
MNISTVELLDWLVKASYLVAATLFLLGLQRMASPLTARSGIRWAGLGMLLATAATFFLPELHNVPLILVALLLGAGLAWWSAGKVAITDMPQMVALYNGMGGGSAAAIGAVELLRYAFLAHRDTSHWSAQALADLAARQPSGTMLLLAVVGAAIGAVSLSGSVIAWAKLDGRLDKRVTWPGQQVMNLLVALAVVVLAIIAASTLSAWAIVAFFVLALALGVLMTLPIGGADMPVVISLYNAFTGLAVSFEGYVLGNEALIIAGMMVGAAGILLTRLMAKAMNRPIRNVLFSNFGGGAGGEAQAISGAQKPIEAPDVAAMMAYAERVVIVPGYGMAVAQAQHKIWELAQRLGQRGVKVKFAIHPVAGRMPGHMNVLLAEAGVPYDLIADMDDINPEFTNTDVVLVIGANDVVNPVARTDRASPIYGMPVLDVVNARNVVVIKRGKGTGFAGIENALFYADNTRMLYGDGAEAAASLVSELKALDGGH
>LR134324.1|VEF37322.1|2629625_2629946_+|NAD(P)-transhydrogenase-subunit-alpha
MSDGFVALYIFMLAAIAGHVIISRVPVILHTPLMSGSNFIHGIVLIGAMVVLGHAQTPLEKVLGFLAVVLGAGNAAGGYVVTARMLEMFKPSAPRGGKDEPKEPQA
>LR134324.1|VEF37321.1|2628942_2629527_-|RNA-polymerase-factor-sigma-70
MVTPSEEPYPVLVSSPAPPSAETDALPASLEAFLASVGPRAFRFAEAGLRQREDAMDAVQDALLRMLDYTDKPAAEWAPLFWSILRRRVIDLQRRRRFRLPFWRDNQDAEGGEIDWADPGPDPAQAHEQRQQYQQLVDALRTLPARQREAFTLRVLQDLDGATTARAMGCSEGAVKTHLARARQALQDYLETHP
>LR134324.1|VEF37320.1|2628616_2628946_-|transmembrane-protein
MNRSLPSDDTLRRLHAQSLQALAPATLARLRQARHGATATTHRGRWRWWLASACSLVVALGIGLQFTGHGTLAGPPPDPVLASVEDNGALYDENPDLYLWLGDTDLAME
>LR134324.1|VEF37319.1|2628160_2628613_-|Protein-of-uncharacterised-function-(DUF3106)
MSRLLALPLLLTLALLPAVPALAQNATPAPAAPVAPLPAWEQLSESQRESLLAPLRDRWNSADAGQRQRMLSHGQRWQSMSPEERDKARRGLRRFEHMSPEQREQARALFGQMRNMPPAQRDALRERWSQMTPEQRRDWVRDNPPPAKPR
>LR134324.1|VEF37318.1|2626960_2628040_+|NAD(P)-transhydrogenase-subunit-alpha
MAVALLGIKETAPGERRVALTPETARKLGALGITVWYEAGAGLAAGFTDAAYDDAGARVFDAGRWAEIDILLCVQAPPATVLEQLRPGASVVGLLAPANDPALAALAADDRLQLFPLQQLPRTTRAQAMDVLSSQAGMAGYKAALIAAERAPRFFPMLTTAAGTVRPAKVLVIGAGVAGLQAIATARRLGAQVEGFDVRPETREQIQSLGARFLDLGVSAAGEGGYARALTDDERAEQQRRLADHLRSVDVVICTAAVPGRPAPTIVTAAMVEGMATGSVIVDLAAESGGNCALTQPGHCIEHQGVTIDGPLGLASRGATQASEMYARNLLNFVALFVREGRLGFDWDDELLAKTRWQA
>LR134324.1|VEF37317.1|2624586_2626908_+|thymidine-phosphorylase
MMSVPTPMGSPGRDPAQLQLARDMVLPALCQAFGAALARFDDALFDRAGNAGSSQLLFLDAMRELRRRREEIAAAFAGHLQQAWAALAAGEPLSAEATLSGPAEDGLSLLAEHVLESRLAVRNFATVLLRDFKPVLARLDRRLGRLIGGVELDADHNPISPEHLGVAIHEAFAGCELAPEVHLVLIKLCERDLRAPVGRIYEKLDEQLAAAGVMSQMGAPQRPQPPAPDPRMTGMLDDLVEHRHGAGVDPGFSDDEQAAPAWAQRFAARWSERRGHMQQHLGGDDGAAGEAYAGQQGMLLEALHELLQQTRHVREDATSAAQVAVGQQRPLSQREMMSVLSLLQATPSATLRAAIGEDGESLAQRLKSEVLSSATQLGVDPGQTRLDPQDEDAIDLVGMLFDVMLDERELEGRSRELIGRLVVPFVKVAMLDRRMFVQKTHPARKLLNSLAEACEGNTGESQAERMLMAKVEEIIERLVAEFNENLAIFLTLEEEFREFLVQHRRRVEIAERRAAETQRGQEKLEMARTRAGAELDRRIGDATLPPAIAEFLRQPWQHHLTLALLREGEEGASVAEALSLGDGLLEEVAEARRQIVGKPWLQAWQPVLAKVFASVGVHGDAATGAIDALHDTLQGIAESRPELQRALPELPQVALPAPPVAESPAVELSGQIDADDFDNADADRFRRMEIGNWLDFVDKDGKVQAGKLSWVSPISSRLLFVNRRGVRFCVASPEELAVMVRLGRLRAHVDDGAFDSAMQGVIDRLDPGSTTLH
>LR134324.1|VEF37316.1|2623673_2624273_-|nitroreductase
MTGSDSMPDPAALLALDARRSVPSRQLGEPGPDPATLQRMLASAVRVPDHGKRVPFRFLKIAGDARHTLGDFLAKRSRQRDPHAGEAVFEKDRQRFSHAPLVIVVVASPRPDPKVPEQEQLMTAGCVCFALLQAAQALGFGAQWLTAWMAFDPVVQAHLGLVEGERIAGFIHIGTAKADVPERERPDPATLLQDWTPPA
>LR134324.1|VEF37315.1|2622741_2623677_-|5'-3'-exonuclease
MTLPAPPPSLYLVDASIYVFRAWHSLPDQFQDAQGWPTNAVHGFARFLLDLLERERPRHIAIAFDEALDSGFRHRLYPAYKANRDPAPEALKRQFVHCKALCAALGLAVLAHHDYEADDLIGSALHVHRGSHRGVIISADKDLSQLLLDHDEQWDYARNQRWDVAGVKARHGVHAHQIADYLALCGDAVDNIPGVSGVGSKSAAVLLAHFGSLDALYERLDEVPFLRLRGAAQMAVRLREQREHALLWRQLTTIALDAPLEGSQPGLLRQTADPELLGGLCQTLRFGPMTRRRLFDAAGVPDILPTHSEPA
>LR134324.1|VEF37314.1|2622190_2622745_-|ADP-ribose-pyrophosphatase
MSQRNTEAPRVVYEGKYQRMLVRGTWEYSERTHAGGLAAIIIAVTPEDKVLFVEQFRVPLQAPTIEMPAGLVGDIHAGESIEVSAVRELEEETGWTADHAEVLMIGPTSSGASSEKIAFVRATGLRRIGEGGGDDSEDITVHEIPRAQAAAWLVQKMGEGYELDAKLWAGLWMIEHHLDGRPRG
>LR134324.1|VEF37324.1|2631663_2632083_-|transmembrane-protein
MSSIATRARTVTWLWSLMLLLGLLVAPLAWMVLALMTGRQVGWMAVVSALELVFMLRLGTLGPGRLRIALVVLGTLLVAAVANWAIASAWMGGSIGLDLWDATTRMGPHLAWTLINLANGAMEWLWLAVAVVVGAWLAR
>LR134324.1|VEF37325.1|2632259_2632757_+|FeS-assembly-SUF-system-protein-SufT
MVPQGDTVTLPAGSYGYITQALGGSYSVFVEGNLFRIAGKDGDAIGKEAPAPLELPADATDEQVEQLVWQQLRTCFDPEIPVNIVELGLVYEVEIKHLDEGKREIDVKMTLTAPGCGMGEILVDDVRSKLEMIPTVAEADVDLVFDPPWNQHMMSEAARLETGML
>LR134324.1|VEF37326.1|2632816_2633911_+|branched-chain-amino-acid-aminotransferase
MSQSIPSFAVTRSDHPRSAEERAKILEKPGFGLHFTDHMVEVRWDKDAGWHNASVRAYGPLQLDPAAAVLHYGQEIFEGIKAYRHADGSIWTFRPDANGRRLQRSAQRLALPELPVEIFVESLKQLIAVDSEWVPSADESSLYFRPFMIGDEAFLGVRGAHKAGYYVIASPAGPYFAKGVAPVSIWLSTEYARAAKGGTGAAKCGGNYAASLLPQQKAQAQGCSQVLFLDPVEGRYLEELGGMNVFLVYKDGTLVTPELSGSILEGITRESILQLARDRGMKVEERKVSIDEWKDGVASGAISEVFACGTAAVVTPIGQLKGEGFSVGDINAPAGEVTMSLRKELTDIQYGRLPDRHNWLVKLG
>LR134324.1|VEF37327.1|2634380_2636123_+|secreted-serine-protease
MSQVTQPRVRRVWVVLGASVLSSLLLATPALAGDVQLSGLQSAPTHQRFIVKYRDGSAPVANTTALASSLKSAAAGLASSQGRALGLQQVRKLAVGPTLVRTDRPLDQAESELLMRKLAADPNVEYVEVDQIMRATLTPNDTRFSEQWGFGTSNASINVRPAWDKATGTGVVVAVIDTGITNHPDLNANILPGYDFISDAAMARDGGGRDSNPNDEGDWYGANECGSGIPASNSSWHGTHVAGTVAAVTNNSTGVAGTAFNAKVVPVRVLGKCGGYTSDIADAIVWASGGTVSGVPANANPAEVINMSLGGGGTCSATYQNAINGAVSRGTTVVVAAGNSNTNVSSSVPANCANVIAVAATTSAGARASFSNYGAGIDISGPGQSILSTLNTGTTTPGSFSYASYNGTSMAAPHVAGVVALMQSVAPSPLSPAQVESIIKSTARPLPGACSGGCGAGIVDANAAVTAAINGGGNPNPGGNVLQNNVPVTGLGAATGAELNYTVAVPAGSTQLRVAISGGSGDADLYVRQGSAPTDTTYTCRPYLSGNSETCTINSPAAGTWYVRVKAYSTFSGLTLSAQY
>LR134324.1|VEF37328.1|2636211_2636706_-|L-asparaginase
MHMMEELLVVTTGGTIDKIYFDDKSDYQIGDPQIGMILRELGVTFRFNVIPILRKDSLHINDEDRELIRATIAAQPTRHVLVTHGTDSMVQTGKVLATIPDKTIVMTGALSPARFRGSDAEFNIGCAIGAVQSLPSGVYIAMNGRIFDPQHVRKNVAANRFESV
>LR134324.1|VEF37329.1|2636776_2637112_-|transmembrane-protein
MNRAPRTVLLLALMGLAALFAGWFINDRHWLATQLVFTAPPLALAIAVRLGWRKAGFWASVLALGWFSHGVMSAWSHPETRWLALIEIALALLVIFSASLPGLRARFGKRR
>LR134324.1|VEF37330.1|2637108_2637702_-|Trp-repressor-binding-protein
MGEILVLYYSRGGSVARLARQIARGIGEVPGMTARLRTVPPVAAVTQTAQPPVPDDGAPYVSVQDLVDCQGLLLGSPTRFGNMAAPVKHFLDGLGAEWVNGTLSGKPAGVFTSTASMHGGQESTLLSMQVPLLHHGCVIVGIPFTEPALSHTISGGTPYGASHVAGAADDPQPTDDEAVLARALGRRVADIAQRLAR
>LR134324.1|VEF37331.1|2637779_2639054_+|ribonuclease-BN/uncharacterised-domain-fusion-protein
MEPLDTLNLWMERARDRARAISFGRFLWHRFLDDRLFQAAAALAYTTVFALVPLAIVVFGVLSAFPVFDRWSDQLSDYVFSNFVPSAARAAEGYLRQFSASAGQLTAAGFIALVASLLITLNSVEETFNQIWRVGSTRPKLTRFLVYWTVLTLGAMLAAASLAVSARVFAMPLFGTQEGRWLAELALRLAPILIEFVCITLMFRVVPHHTVKWRHAVPGAILAAVILELVKWGIGAYLGSFQSYQKLYGTVAFVPILLLWIYLCWVAVLLGASLASSMAAFRYQPVELRLPQGYEFYGLLRLLGRFQHARAKGKGLADDEILRLEPMLTDSLLQDLICNLQEIDLLRRDERGEWLLSRDLDQVSLADLYECTQLRIPVAEQHLPYRDDSLGRAALAALDDLRLPLRERLKRKVSDIYTDSGDMP
>LR134324.1|VEF37332.1|2639050_2639626_+|Thioredoxin
MTRKTPLPLLLPLTLLLALAACKPAQEPTPASSQPPAQAPTPTTPAPVDETPAERTTAEFPTLKMKAVDGSDYDLAAHRGKWVVVNFWATWCAPCRKEMPELSALHAMRSNIEVVGLAYEDIEVPEMQSFLTKHPVTYPIVIVDPFDPPADFATPRGLPLTHLLDPQGKLAHTFLGPVTAADIEKQIAAAK
>LR134324.1|VEF37333.1|2640124_2640907_-|transcriptional-regulator
MAKLKRKDYDELLLPLQLELTAMARWVQLSGQRLLVLFEGRDTAGKGGAIQAISQHLNPRQCRVVALPKPTDREATQWYFQRYASHLPAAGEIVLMDRSWYNRAGVERVMGYCSETEYQQFLRQAPVFEQLLVDDGILLFKYWLCVDQEQQEKRFAERHLDPLKGWKLSPVDLKSRSKYSAYTEAREAMLRATHREAAPWTLVDFNDQRLGRLTLVRNLLDRLPDTRVDAPLPELPKLKGKLHREHYDVLKPIEDFPVED

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Crispr_ID: LR134324_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134324_6

3502092-3502185

Orphan

Consensus_repeat	Method
GTGCCAACCAAGGTTGGCACCTACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134324_6

>merge|LR134324|6|3502092-3502185|CRISPRCasFinder
GTGCCAACCAAGGTTGGCACCTACCGGAAGACGTGCCTTGGTAGAGGCCGACCTTGGTCGGCGCTTTTGTGCCAACCAAGGTTGGCACCTACCG

>LR134324|6|6|3502092-3502185|CRISPRCasFinder
GTGCCAACCAAGGTTGGCACCTACCG	GAAGACGTGCCTTGGTAGAGGCCGACCTTGGTCGGCGCTTTT
GTGCCAACCAAGGTTGGCACCTACCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134324.1\|VEF38155.1\|3510552_3511122_-\|Dna-binding-response-regulator-PrrA-(RegA)	unknown	unknown	gnl\|CDD\|226933
LR134324.1\|VEF38156.1\|3511118_3512345_-\|Sensor-histidine-kinase-PrrB-(RegB)	unknown	unknown	gnl\|CDD\|223715
LR134324.1\|VEF38140.1\|3496646_3497315_-\|transmembrane-protein	unknown	unknown	gnl\|CDD\|377734
LR134324.1\|VEF38149.1\|3504814_3506200_+\|Poly(A)-polymerase	unknown	unknown	gnl\|CDD\|236939
LR134324.1\|VEF38142.1\|3497830_3499231_-\|ATPase-related-to-phosphate-starvation-inducible-protein-PhoH	unknown	unknown	gnl\|CDD\|224787
LR134324.1\|VEF38152.1\|3507535_3508375_+\|Pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
LR134324.1\|VEF38141.1\|3497327_3497834_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134324.1\|VEF38145.1\|3500610_3501504_+\|dihydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
LR134324.1\|VEF38139.1\|3495728_3496538_-\|phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
LR134324.1\|VEF38154.1\|3508913_3510428_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
LR134324.1\|VEF38151.1\|3506723_3507539_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
LR134324.1\|VEF38143.1\|3499315_3499795_-\|Thiol-peroxidase,-Bcp-type	unknown	unknown	gnl\|CDD\|224146
LR134324.1\|VEF38144.1\|3499886_3500447_-\|glycine-cleavage-system-transcriptional-repressor	unknown	unknown	gnl\|CDD\|225337
LR134324.1\|VEF38138.1\|3492918_3493839_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
LR134324.1\|VEF38153.1\|3508536_3508917_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
LR134324.1\|VEF38150.1\|3506203_3506689_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase	unknown	unknown	gnl\|CDD\|223872
LR134324.1\|VEF38146.1\|3501536_3502052_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|225854
LR134324.1\|VEF38147.1\|3502239_3502563_-\|4Fe-4S-ferredoxin	unknown	unknown	gnl\|CDD\|378771
LR134324.1\|VEF38137.1\|3492076_3492778_-\|Pirin	unknown	unknown	gnl\|CDD\|380375
LR134324.1\|VEF38148.1\|3502743_3504168_+\|D-xylose-proton-symporter-XylE	unknown	unknown	gnl\|CDD\|340917

Protein	Function_ID	Function_description	E-value
LR134324.1\|VEF38155.1\|3510552_3511122_-\|Dna-binding-response-regulator-PrrA-(RegA)	gnl\|CDD\|226933	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].	3.5242e-77
LR134324.1\|VEF38140.1\|3496646_3497315_-\|transmembrane-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	2.65145e-35
LR134324.1\|VEF38149.1\|3504814_3506200_+\|Poly(A)-polymerase	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	1.98478e-170
LR134324.1\|VEF38142.1\|3497830_3499231_-\|ATPase-related-to-phosphate-starvation-inducible-protein-PhoH	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	0
LR134324.1\|VEF38152.1\|3507535_3508375_+\|Pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	3.54381e-152
LR134324.1\|VEF38148.1\|3502743_3504168_+\|D-xylose-proton-symporter-XylE	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.75786e-156
LR134324.1\|VEF38145.1\|3500610_3501504_+\|dihydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	8.92392e-133
LR134324.1\|VEF38139.1\|3495728_3496538_-\|phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	3.02947e-131
LR134324.1\|VEF38154.1\|3508913_3510428_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
LR134324.1\|VEF38151.1\|3506723_3507539_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	7.76327e-146
LR134324.1\|VEF38143.1\|3499315_3499795_-\|Thiol-peroxidase,-Bcp-type	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	7.79932e-70
LR134324.1\|VEF38144.1\|3499886_3500447_-\|glycine-cleavage-system-transcriptional-repressor	gnl\|CDD\|225337	COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid transport and metabolism].	3.86026e-74
LR134324.1\|VEF38138.1\|3492918_3493839_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.58363e-67
LR134324.1\|VEF38153.1\|3508536_3508917_+\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	4.82894e-72
LR134324.1\|VEF38150.1\|3506203_3506689_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	3.97129e-64
LR134324.1\|VEF38146.1\|3501536_3502052_+\|Uncharacterised-protein	gnl\|CDD\|225854	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane].	0.00817884
LR134324.1\|VEF38147.1\|3502239_3502563_-\|4Fe-4S-ferredoxin	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	7.04517e-20
LR134324.1\|VEF38137.1\|3492076_3492778_-\|Pirin	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	2.12903e-75
LR134324.1\|VEF38156.1\|3511118_3512345_-\|Sensor-histidine-kinase-PrrB-(RegB)	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.00653e-18

>LR134324.1|VEF38146.1|3501536_3502052_+|Uncharacterised-protein
MRQSVSTVRVLSYALLAVAVAAGTTGCFKRGVKGDYALAPEMRPLEVPPDLNLPNAATDNKVPTLASATKPAAPVAAAPAVGNTGFTIAGGKDEAFAKVGTALEGVEGVTIASRAQLLGSYDVAYEGSNFLVRVVAVDAGAYISAVDPRGLPATAEAPVKLIAALKAKLAQ
>LR134324.1|VEF38145.1|3500610_3501504_+|dihydrodipicolinate-synthase
MSLSGLITALATPFRADGALDPDGWQRLLHLQLEGGVHGVVVAGSTGEAATLTDAEYDQLLASAVERIGGRIPVMAGTGLSGTAKTIEQTRRAAALGASHALVVTPPYVRPTQAGLIAHYRAVADQGGLPVVLYNVPGRTGCDMQPETVAELASHPNIVGIKEAVGDTGRVQALLALRSPKFAVLSGDDGTAARSIRAGIDGLISVGSNVLPGAYRRMCELAAAHDHEATESWDARLHPFHDFCGVEPNPIPVKALLRRIGIGHDLRLPLLPLSAAHHPAADHLAGDIAALEALSSH
>LR134324.1|VEF38144.1|3499886_3500447_-|glycine-cleavage-system-transcriptional-repressor
MTDTTPRPAPSENHLLINAYTTHPESPLLSVTRRIADSGCNLVDARLATVGRDVSVTALATGSWDSVAKLEAMLTRLEREEGLKLVWYRTAAKQAQSNLLPYIVEVIAADKPGILFQLADFFDRQGITIENLQSTRYRAMQTGAEMFSAQVTIGVPANMHIAALRDDFLEFCDHLNLDAIMDPMKF
>LR134324.1|VEF38143.1|3499315_3499795_-|Thiol-peroxidase,-Bcp-type
MNNGDTLDSTTLSLPLALSGGDQATLGDYAGQWLVLYFYPKDSTPGCTTEGIDFNALLPKFKKAGAVVLGVSRDSVKSHDNFCARQGFGFPLVSDGDEALCSAFDVIKMKNMYGKQVRGIERSTFLISPDSRIVQSWRKVKVAGHADAVLAELKASQSK
>LR134324.1|VEF38142.1|3497830_3499231_-|ATPase-related-to-phosphate-starvation-inducible-protein-PhoH
MTRGKRIYVLDTNVLMHDPTALFKFEEHDVYLPMQVIEELDNGKKGTSEASRNARQVSRFLNELVQASGLDNLADGIPLQRPNGLQLRGKQSAGKLRFQTSHFDAGKSFGKVIPDNAILGAILALKEETPDLPVVFVSKDINLRIKAAIAGIVSEDYENDRALDDFSLLYTGATELPEDFWKRHGDDLRSWSDKGRTHYEIQAQDGEEWYPNQYVYLPGEDEVELRVSRVVGDGKVVLSLVDDFRHGSHAVWGISARNREQNFALNALMDPEIDFVTLLGTAGTGKTLLALAAGLAQTMDQQRYREIIMTRATVSVGEDIGFLPGTEEEKMTPWMGALTDNLEVLTYNQEGGTWGRQATNDLLASRIKIRSMNFMRGRTFLSRYLILDEAQNLTPKQMKTLITRAGPGTKIVCLGNVEQIDTPYLTETTSGLTYAVDRFKNWPHSAHITLRRGERSRLADYASEVL
>LR134324.1|VEF38141.1|3497327_3497834_-|Uncharacterised-protein
MNRRTRLLLPTAAITLAAVLGACTTTRGPASVPTAERTGQSWVVTRPIIAAQVLDTCSRPSPGREAGRVSGYWAPSRQQIDQLEANLSSLEAQVPKVLDFDRQYAGIESAGRRLIYINAFHLPDDSGINPAREAIRVCDGGAQFWGAVFDPASNTFSELQFNGGFGGP
>LR134324.1|VEF38140.1|3496646_3497315_-|transmembrane-protein
MGIRLPTWVWIGAVALSCVAGMVNVVGFLGFEHQAVSHMTGSTSQLGMALAQGDWRAVGHLWGLLIAFSLGAMLSGLLIQDSTLQLGRRYGVALALESALLLVAIPLFERHQIWGALAAAMACGLQNAMATTFSGAVVRTTHLSGMFTDLGIGLGHLLRGLPLQVRRLTLSGLIISGFLAGGILGAWLFVRWQYDALLAPALLTGLTGLGYVLYQQWARWRH
>LR134324.1|VEF38139.1|3495728_3496538_-|phosphomethylpyrimidine-kinase
MSPTTPVSALTIAGSDSGGGAGIQADLKAFAAHRVHGLSAIAALTAQNTRGVIAVHVPPIDFLRAQLDACFDDFDIHAVKLGMLANAEVINAVADALERHRPPHVVLDPVMVATSGARLLEDSALQAMRERLIPLATLITPNTPEAELLVGRKIGNGDDAERAASALLDLGAGAVLLKGGHLQEGNRVIDRYFDGVSSEEFIHARLPLDAHGTGCTLASAIAAQLCNGLSLANACEAGIDYVARGLQQGYAPGRSEVLVLDHFGAAPYA
>LR134324.1|VEF38138.1|3492918_3493839_+|LysR-family-transcriptional-regulator
MLKLSLDALQILDAIDRRGSFAGAGKALHKVPSTISYTVAKLEEDLGVQLFDRVGPRAEPTEAGRALLDEGRHLLRAARELELRVRRVASGWETELTLAVDSVFPTWLLGPDIAAFREAEAPTRLRLIGEALSGTWEALLDRRADLLVGAPGEGPSGGGYVVEPLGTVEFVFTVAPDHPLAKVPGVLGREQLVEHCAIAVSDSARRLLPRTVGLLMGQEMLTVPDMASKLKLQCEGVGFGFLPEPCARAAVARGQLVIREVEEHKPEETFWLAWRTGEDGAALRWWRERLRRPELLSQWWQAMAKG
>LR134324.1|VEF38137.1|3492076_3492778_-|Pirin
MLQIRKSATRGLAEHGWLSSRHTFSFANYYDPRYVSFGPLRVINEDKVIGGQGFGTHSHSNMEIVSYVLGGALEHKDSMGTGSVLRYGDVQRMSAGSGVSHSEFNHSADETVHFLQIWIFPDRENITPSYEETHFAPETKRGQLRLIASPDGADGSLRIHQDARIFATILDGGQKLHHALGNGRGAYVQVARGQLQVNGITLEAGDALQVSDEAQLTLENGNDAEVLVFDLPL
>LR134324.1|VEF38147.1|3502239_3502563_-|4Fe-4S-ferredoxin
MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDDVPAGQEGFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLKLLER
>LR134324.1|VEF38148.1|3502743_3504168_+|D-xylose-proton-symporter-XylE
MSQAPSRTASHGGENTAFIVLISCVATLGGFLFGFDSGVINGTVDGLRQAFNSSEAALGFEVASMLLGCAVGAFLAGWLGDRLGRRGVLIVSALMFLVSALGAGAAHASWLFIAARVLGGFAVGAASVMSPAYIAEVASARYRGRLATVQQMAIICGLFAAFLSNYLLARAAGASTEPLWLGHEAWRWMFWMQALPSALFLLLLLVIPESPRFLVLKGRQGQARAVLSRLYGEAAARAKQAEIEASLEQDQHKPRFGDLRSRATGRLRPILWVGIGLAMFQQLVGINVVFYYGAVLWQAVGFSESDALLINVLSGALSIGACLLTVLLIDRIGRKPLLWVGSVGMSVALVLMVVAFASGSLAGGRLQLSDGMGRLALVAANVYVVFFNMSWGPVMWVMLGEMFPNQIRGPALAVAGAAQWTSNFAITVTFPMLLAGIGLAGAYGIYAVAAILSIVFVVRYVRETKGKELEQMEG
>LR134324.1|VEF38149.1|3504814_3506200_+|Poly(A)-polymerase
MPLGNPETSTGSANIISSATSPFSLRVIPRDQHTISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAIRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLFPESAKALKANRTGALRRMLVEGLANTDARVANDEPVSPAFLFALLLWPAFCRAQATLLKQGVAPEEAQRRAADRVTVQQLSTIALPRRFSLPMQEIWLLQSRFSSRQRKRVFRTLTHPRFRAAFDFLSLRQVASSEHAADVEFWREAQAQSGRELESSLDAMHSEDGDDESGAPRKRRRRRRRPGAAAGAAGE
>LR134324.1|VEF38150.1|3506203_3506689_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase
MTLAWIGLGANLGDAAATVGAAIAALDGLPGTRLRQASRLYATPAWGNEDQPPFVNAVASVETTLPADELLQAMLALEQRFGRTRDPAVHWGPRALDLDLLLYGAQALDQPGLKVPHPYLHERAFVLVPLAEIAPELTIPGHGRVQDAVMRVDACGIAPIG
>LR134324.1|VEF38151.1|3506723_3507539_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSTHADSKPWTVPALAEAKRNGQKLVMLTAYDAGFARTFDANGVDLILIGDSLGMVVQGHDSTLPVTVADMVYHTRAVARVLQRALLVADLPFGADATPERALDASLQLLQAGAEMVKIEGAGFKVDIIRYLVEREIPVCAHLGLTPQSVLRLGGFKIQGRGDAARQLVEDARAVAAAGASIMVLECVPTPVAAEVTAAVDVPTIGIGAGPQCDGQVLVLHDFLGLDSGHRRPKFVKDFLAEGGSVAGATRAFADAVRDGSFPDEQHAYAQ
>LR134324.1|VEF38152.1|3507535_3508375_+|Pantoate--beta-alanine-ligase
MIQTFNELGALREQIAQWKREGLRVALVPTMGNLHGGHHSLVTLARQYADKVVASIFVNPTQFGPNEDFSRYPRTPEADVAGLEQVGCDAVWLPSVETMYPLGVDRTTRMHAPGVSEVLEGASRPGHFDGVCTVVARLFLQVQPDVAVFGRKDYQQLAVIRQMVAELSFPIQIVGAEIVRDEDGLAKSSRNQYLSDEQRPVATTIHRTLLGMREGYVAGQARDRIEADATAALQAAGFQVDYAVLRTPELAEPTFDGGGRVALIAARLGTTRLIDNLEF
>LR134324.1|VEF38153.1|3508536_3508917_+|aspartate-1-decarboxylase
MHLSLLKTKIHRATVTHSELNYEGSIAIDDNLLAATGIREFEQVHIWDVTNGARFSTYAIRAEAGSGVVSLNGGAARHVQVGDIIIIAAFASMTEQEADSFRPKLVYVDGNNQITHTNDTIPTQAA
>LR134324.1|VEF38154.1|3508913_3510428_+|glucose-6-phosphate-isomerase
MTTNNGFDSLHSHAQRLKGASIPSLLAAEPGRVQELALRVGPLYVNFARQKYDAAALQALLALAAERDVGGAITRLFRGEQVNLTEGRAALHTALRGDVVDAPVAAEAYATARAIRQRMGVLVRALEDSGVTDVVSVGIGGSDLGPRLVADALRPVSGARLRVHFVSNVDGAAMQRTLATLDPAKTAGILISKTFGTQETLLNGQILHDWLGGSERLYAVSANPDRAAKAFAIAADRVLPMWDWVGGRYSLWSAVGFPIALAIGFERFEQLLEGAAQMDAHALDAPLERNLPVLHGLTDIWNRNLLGHATHAVMTYDQRLALLPAYLQQLVMESLGKRVQRDGAPVTTDTVPVWWGGAGTDVQHSFFQALHQGTSVVPADFIGCVHNDDPYTINHQALLANLLAQTEALANGQSSDDPHRDYPGGRPSTLILLDALTPQALGALIAMYEHAVYVQSVIWNINAFDQFGVELGKQLASGLLPALQGEDVAVADPMTREILAQLKR
>LR134324.1|VEF38155.1|3510552_3511122_-|Dna-binding-response-regulator-PrrA-(RegA)
MSLHHSTLGLLVDDDELYLRTLQRSLARKGLETQTAQDAASALALARQHPPAFALIDLKLGSDSGLALIQPLRALRADMRILLVTGYASIATAVEAIKLGADDYLPKPATVPMILRALGEEDDGPADDGEMEVPDAMTPISRLQWEHIQQAMHETGGNVSAAARLLGMHRRSLQRKLAKRPSPERDPSR
>LR134324.1|VEF38156.1|3511118_3512345_-|Sensor-histidine-kinase-PrrB-(RegB)
MTGPDAPFLRTLCSLRWLAVGGQAATILVATWVLGLPLPQLPLWAGVAVLALFNIYTQLRPDAADTAPLTAFGHILVDVIILTWMVGWSGGMANPFSSLFLILIALAAFALPLRWALAVALACLLGYAASGIFGQPLPDGYFRAQDLNRWGVVANFLISAAVVLAFSTRLALALRERELELSALRERFARNEGIVALATHAASVAHELNTPLATMTLLADDVAERSEEPEVREDMETLRELLVQCRERVLALAAPASADAPGRSHSSAQQVLEQWRLVRPTIDLHRNDDAPLRLPLDPGVGHLLMVLLNNAADAGEKAGRPRVDLDLRIEGDDLIGEVRDYGHGFDARAAVLPGKLFGSSKSEGMGVGLALSHATIERLDGEMWMRPAQGAGSRVGFRLPLAPREDTP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

451877 : 467213

Xanthomonas_virus(57.14%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF33555.1\|451877_460166_-\|tail	phage tail fiber protein	I7HDJ4	Xanthomonas_virus	4.9e-10	47.8
VEF33556.1\|460156_460552_-	Uncharacterised protein	Q2NPH1	Xanthomonas_virus	5.2e-27	47.4
VEF33557.1\|460551_461013_-	phage protein	I7GYA2	Xanthomonas_virus	1.1e-36	50.3
VEF33558.1\|461009_461363_-	Uncharacterised protein	I7H418	Xanthomonas_virus	4.8e-16	39.0
VEF33559.1\|461359_463675_-\|tail	phage tail tape measure protein, lambda family	A0A2R3UAA7	Siphoviridae_environmental_samples	5.0e-37	33.2
VEF33560.1\|463769_464012_-	Uncharacterised protein	NA	NA	NA	NA
VEF33561.1\|464092_464437_-	Uncharacterised protein	G9FHI3	Rhodococcus_phage	7.5e-22	50.0
VEF33562.1\|464436_464895_-	Uncharacterised protein	NA	NA	NA	NA
VEF33563.1\|465260_465932_+	dienelactone hydrolase family	NA	NA	NA	NA
VEF33564.1\|465928_466351_+	diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	NA	NA	NA	NA
VEF33565.1\|466366_466534_+	transmembrane protein	NA	NA	NA	NA
VEF33566.1\|466640_467213_-	Deoxycytidine triphosphate deaminase	S5VM63	Pseudomonas_phage	4.5e-72	70.2

DBSCAN-SWA_2

2068810 : 2109866

Stenotrophomonas_phage(17.65%)

tRNA,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF36820.1\|2068810_2069323_+\|head,tail	Phage gp6-like head-tail connector protein	NA	NA	NA	NA
VEF36821.1\|2069319_2069670_+\|head,tail	phage head-tail adaptor	NA	NA	NA	NA
VEF36822.1\|2069693_2070050_+	phage protein	NA	NA	NA	NA
VEF36823.1\|2070121_2070781_+\|tail	tail protein 3	C4ML12	Xanthomonas_virus	1.2e-63	56.6
VEF36824.1\|2070780_2071089_+	Domain of uncharacterised function (DUF1789)	NA	NA	NA	NA
VEF36825.1\|2071139_2071397_+	phage protein	Q7Y5K1	Xanthomonas_virus	3.2e-09	36.4
VEF36826.1\|2071472_2072837_+\|tail	Phage tail tape measure protein	K7PM62	Enterobacteria_phage	1.6e-19	31.1
VEF36827.1\|2072833_2073163_+\|tail	minor tail family protein	C7BGC9	Burkholderia_phage	9.3e-22	54.5
VEF36828.1\|2073171_2074332_+	carbohydrate-binding, CenC-like	A0A2P0VPG9	Ralstonia_phage	1.7e-25	33.8
VEF36829.1\|2074393_2075545_+\|tail	deduced tail fiber protein	Q2PGC1	Xanthomonas_oryzae_phage	1.1e-29	37.8
VEF36830.1\|2075576_2076698_+\|tail	deduced tail fiber protein	A0A0H4IPB2	Stenotrophomonas_phage	3.8e-38	34.0
VEF36831.1\|2076699_2077152_+	Uncharacterised protein	NA	NA	NA	NA
VEF36832.1\|2077164_2078304_+\|tail	mu-like phage tail fiber protein	A0A0H4IPB2	Stenotrophomonas_phage	2.4e-32	32.9
VEF36833.1\|2078346_2079483_+	carbohydrate-binding, CenC-like	A0A0H4IPB2	Stenotrophomonas_phage	1.3e-75	50.2
VEF36834.1\|2079486_2079639_+	Uncharacterised protein	NA	NA	NA	NA
VEF36835.1\|2079635_2080331_+\|tail	phage minor tail protein	A0A2R3UA90	Siphoviridae_environmental_samples	2.8e-92	66.7
VEF36836.1\|2080394_2081135_+\|tail	phage tail assembly protein	A0A2R3UAR4	Siphoviridae_environmental_samples	5.8e-80	58.0
VEF36837.1\|2081127_2081730_+\|tail	lambda tail assembly I	W0LI27	Edwardsiella_phage	1.1e-49	53.0
VEF36838.1\|2081726_2085215_+\|tail	phage tail fiber protein	A0A2R3UA88	Siphoviridae_environmental_samples	0.0e+00	58.4
VEF36839.1\|2085214_2085532_+	Uncharacterised protein	NA	NA	NA	NA
VEF36840.1\|2085531_2086242_+	Uncharacterised protein	NA	NA	NA	NA
VEF36841.1\|2086383_2087151_+	sulfate permease	A0A2H4J153	uncultured_Caudovirales_phage	7.9e-72	60.2
VEF36842.1\|2087306_2088182_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEF36843.1\|2088531_2089125_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEF36844.1\|2089150_2091565_+	carboxypeptidase	S5VZH2	Pseudomonas_phage	5.8e-28	38.7
VEF36845.1\|2091659_2092691_+\|tRNA	tRNA dihydrouridine synthase A	NA	NA	NA	NA
VEF36846.1\|2092904_2093279_+	Uncharacterised protein	NA	NA	NA	NA
VEF36847.1\|2093352_2094036_+	DNA-binding response regulator	NA	NA	NA	NA
VEF36848.1\|2094061_2095486_+	two component regulator sensor histidine kinase transmembrane transcriptional regulator	NA	NA	NA	NA
VEF36849.1\|2095571_2096363_-	inner membrane protein	NA	NA	NA	NA
VEF36850.1\|2096329_2096614_-	Uncharacterised protein	NA	NA	NA	NA
VEF36851.1\|2096758_2097727_+	biotin--protein ligase	NA	NA	NA	NA
VEF36852.1\|2097723_2098455_+	Pantothenate kinase type III, CoaX-like	NA	NA	NA	NA
VEF36853.1\|2098464_2099319_+	sporulation domain-containing protein	NA	NA	NA	NA
VEF36854.1\|2099519_2100644_-	hemolysin related protein	NA	NA	NA	NA
VEF36855.1\|2100671_2101076_-	Uncharacterised protein	NA	NA	NA	NA
VEF36856.1\|2101847_2102150_+	transcriptional regulator	A0A141GEX5	Brucella_phage	4.1e-08	38.2
VEF36857.1\|2102322_2102724_-	Uncharacterised protein	NA	NA	NA	NA
VEF36858.1\|2103319_2104090_+	Protein of uncharacterised function (DUF3011)	NA	NA	NA	NA
VEF36859.1\|2104148_2105093_+	ankyrin repeat-containing protein	NA	NA	NA	NA
VEF36860.1\|2105215_2105665_-	Uncharacterised protein	NA	NA	NA	NA
VEF36861.1\|2105939_2106860_+	Arginase	A0A0N9R043	Chrysochromulina_ericina_virus	5.8e-29	34.1
VEF36862.1\|2107020_2107158_+	entericidin EcnAB	NA	NA	NA	NA
VEF36863.1\|2107360_2107582_+	protein YjbJ	NA	NA	NA	NA
VEF36864.1\|2107655_2108462_-	Uncharacterised protein	NA	NA	NA	NA
VEF36865.1\|2108570_2109866_+\|tRNA	tryptophanyl-tRNA synthetase	NA	NA	NA	NA

DBSCAN-SWA_3

2408371 : 2414634

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF37132.1\|2408371_2409427_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.6e-84	47.7
VEF37133.1\|2409441_2410323_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	7.6e-95	58.2
VEF37134.1\|2410319_2410877_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-44	50.0
VEF37135.1\|2410873_2411767_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	39.3
VEF37136.1\|2411870_2413274_-	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	3.8e-48	28.9
VEF37137.1\|2413287_2414634_-	phosphoglucomutase	A0A127AWJ1	Bacillus_phage	1.3e-29	26.5

DBSCAN-SWA_4

2768084 : 2804370

Rhizobium_phage(33.33%)

protease,tail,capsid,holin,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF37460.1\|2768084_2768354_-\|holin	Phage holin family 2	NA	NA	NA	NA
VEF37461.1\|2768380_2768866_-	Uncharacterised protein	NA	NA	NA	NA
VEF37462.1\|2768865_2771670_-\|tail	phage tail protein	A0A142EZL1	Stenotrophomonas_phage	7.2e-38	40.1
VEF37463.1\|2771695_2774233_-\|tail	Phage T7 tail fibre protein	NA	NA	NA	NA
VEF37464.1\|2774272_2777437_-	Uncharacterised protein	L7TQZ1	Rhizobium_phage	2.5e-47	23.3
VEF37465.1\|2777443_2779618_-	Uncharacterised protein	NA	NA	NA	NA
VEF37466.1\|2779621_2780068_-	Uncharacterised protein	NA	NA	NA	NA
VEF37467.1\|2780052_2780526_-	Uncharacterised protein	NA	NA	NA	NA
VEF37468.1\|2780522_2782655_-	Uncharacterised protein	L7TLW2	Rhizobium_phage	3.6e-66	31.5
VEF37469.1\|2782654_2783245_-	Uncharacterised protein	A0A2R2ZGD2	Ralstonia_phage	1.7e-26	41.9
VEF37470.1\|2783344_2784298_-	Uncharacterised protein	L7TJ83	Rhizobium_phage	2.4e-62	42.7
VEF37471.1\|2784324_2785110_-\|capsid	Phage T7 capsid assembly protein	A0A1B1IVZ8	uncultured_Mediterranean_phage	1.1e-20	30.6
VEF37472.1\|2785109_2785253_-	Uncharacterised protein	NA	NA	NA	NA
VEF37473.1\|2785269_2786826_-\|head,tail	Bacteriophage head to tail connecting protein	L7TJ79	Rhizobium_phage	1.1e-85	37.6
VEF37474.1\|2786818_2786989_-	Uncharacterised protein	NA	NA	NA	NA
VEF37475.1\|2786991_2787171_-	Uncharacterised protein	NA	NA	NA	NA
VEF37476.1\|2787235_2787772_-	phage-like protein	A0A2H4J8A1	uncultured_Caudovirales_phage	1.4e-30	46.1
VEF37477.1\|2787840_2788149_+	Uncharacterised protein	NA	NA	NA	NA
VEF37478.1\|2788174_2788381_-	Uncharacterised protein	NA	NA	NA	NA
VEF37479.1\|2788368_2789202_-	DNA polymerase I, thermostable	M1HMA9	Pelagibacter_phage	2.0e-36	36.0
VEF37480.1\|2789198_2789348_-	Uncharacterised protein	NA	NA	NA	NA
VEF37481.1\|2789344_2789656_-	Uncharacterised protein	NA	NA	NA	NA
VEF37482.1\|2789652_2789901_-	Uncharacterised protein	NA	NA	NA	NA
VEF37483.1\|2789897_2790086_-	Uncharacterised protein	NA	NA	NA	NA
VEF37484.1\|2790051_2790417_-	Uncharacterised protein	NA	NA	NA	NA
VEF37485.1\|2790413_2790752_-	Uncharacterised protein	A0A2H4P845	Pseudomonas_phage	9.6e-22	53.2
VEF37486.1\|2790733_2792608_-	DNA polymerase I	A0A076YNV1	Mesorhizobium_phage	5.0e-160	48.0
VEF37487.1\|2792620_2793271_-	Uncharacterised protein	NA	NA	NA	NA
VEF37488.1\|2793281_2793530_-	Uncharacterised protein	NA	NA	NA	NA
VEF37489.1\|2793695_2795162_-	DNA primase (bacterial type)	L7TLT7	Rhizobium_phage	1.9e-151	56.6
VEF37490.1\|2795313_2795493_-	Uncharacterised protein	NA	NA	NA	NA
VEF37491.1\|2795489_2795876_-	Uncharacterised protein	NA	NA	NA	NA
VEF37492.1\|2795887_2796250_-	N-acetylmuramoyl-L-alanine amidase	I6Q9Z5	Yersinia_phage	2.5e-15	40.6
VEF37493.1\|2796250_2796688_-	Holliday junction resolvase	A0A2I7QZP6	Vibrio_phage	1.2e-05	31.1
VEF37494.1\|2796671_2797337_-	Uncharacterised protein	A0A076YJ33	Mesorhizobium_phage	1.5e-26	40.9
VEF37495.1\|2797336_2797495_-	Uncharacterised protein	NA	NA	NA	NA
VEF37496.1\|2797494_2797779_-	Uncharacterised protein	NA	NA	NA	NA
VEF37497.1\|2797771_2797915_-	Uncharacterised protein	NA	NA	NA	NA
VEF37498.1\|2797959_2800395_-	DNA-dependent RNA polymerase	L7TQW5	Rhizobium_phage	1.5e-164	40.7
VEF37499.1\|2800957_2802253_+	cell division trigger factor	NA	NA	NA	NA
VEF37500.1\|2802327_2802954_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	5.9e-57	57.9
VEF37501.1\|2803080_2804370_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.9e-135	58.0

DBSCAN-SWA_5

4013092 : 4074482

Salmonella_phage(66.67%)

integrase,transposase

attL 4012586:4012600|attR 4077718:4077732

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4012586:4012600	attL	NA	NA	NA	NA
VEF38604.1\|4013092_4016059_+\|transposase	Tn5044 transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	98.8
VEF38605.1\|4016876_4017542_+	Uncharacterised protein	NA	NA	NA	NA
VEF38606.1\|4017784_4018459_+	transcriptional regulator, y4mF family	NA	NA	NA	NA
VEF38607.1\|4018773_4019403_-	Predicted protein tyrosine phosphatase	NA	NA	NA	NA
VEF38608.1\|4019542_4020322_+	Uncharacterised protein	NA	NA	NA	NA
VEF38609.1\|4020501_4020933_-	Uncharacterised protein	NA	NA	NA	NA
VEF38610.1\|4021021_4021423_-	Uncharacterised protein	NA	NA	NA	NA
VEF38611.1\|4021826_4022768_-	enhanced serine sensitivity protein SseB	NA	NA	NA	NA
VEF38612.1\|4022770_4023037_-	Uncharacterised protein	NA	NA	NA	NA
VEF38613.1\|4023358_4023622_+	Copper chaperone	NA	NA	NA	NA
VEF38614.1\|4023759_4024155_+	Uncharacterised protein	NA	NA	NA	NA
VEF38615.1\|4024228_4025533_+	outer membrane efflux protein	NA	NA	NA	NA
VEF38616.1\|4025529_4027044_+	cation efflux protein	NA	NA	NA	NA
VEF38617.1\|4027040_4030181_+	cation efflux system protein	NA	NA	NA	NA
VEF38618.1\|4030285_4031116_-	Nickel uptake substrate-specific transmembrane region	NA	NA	NA	NA
VEF38619.1\|4031142_4031583_-	Uncharacterised protein	NA	NA	NA	NA
VEF38620.1\|4031736_4032288_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEF38621.1\|4032362_4032638_-	EF hand	NA	NA	NA	NA
VEF38622.1\|4032666_4034988_-	copper-transporting p-type ATPase	A0A218MNH6	uncultured_virus	4.1e-87	35.2
VEF38623.1\|4035049_4035979_-	transmembrane transporter protein	NA	NA	NA	NA
VEF38624.1\|4035989_4036373_-	copper resistance protein	NA	NA	NA	NA
VEF38625.1\|4036551_4036902_-	Uncharacterised protein	NA	NA	NA	NA
VEF38626.1\|4036972_4037338_-	copper amine oxidase N-terminal protein	NA	NA	NA	NA
VEF38627.1\|4037511_4038021_-\|transposase	IS3/IS911 family transposase	NA	NA	NA	NA
VEF38628.1\|4038040_4038811_-	cytochrome c family protein	NA	NA	NA	NA
VEF38629.1\|4038823_4040092_-	copper resistance protein	NA	NA	NA	NA
VEF38630.1\|4040088_4041759_-	copper resistance protein	NA	NA	NA	NA
VEF38631.1\|4042253_4042463_+	Uncharacterised protein	NA	NA	NA	NA
VEF38632.1\|4042664_4043015_-	transcriptional repressor protein	NA	NA	NA	NA
VEF38633.1\|4043026_4043896_+	Uncharacterised protein	NA	NA	NA	NA
VEF38634.1\|4043916_4044969_-	transposon cointegrate resolution protein	NA	NA	NA	NA
VEF38635.1\|4045243_4046824_+	conjugative transposon DNA recombination protein	NA	NA	NA	NA
VEF38636.1\|4046801_4047899_+	Superfamily I DNA and RNA helicases	NA	NA	NA	NA
VEF38637.1\|4047914_4048190_-	Uncharacterised protein	NA	NA	NA	NA
VEF38638.1\|4048186_4051378_-	Cobalt-zinc-cadmium resistance protein	NA	NA	NA	NA
VEF38639.1\|4051386_4052337_-	cobalt-zinc-cadmium resistance protein	NA	NA	NA	NA
VEF38640.1\|4052333_4053611_-	cobalt-zinc-cadmium resistance protein	NA	NA	NA	NA
VEF38641.1\|4054019_4054637_-	transmembrane protein	NA	NA	NA	NA
VEF38642.1\|4054661_4056620_-	transmembrane permease	NA	NA	NA	NA
VEF38643.1\|4056710_4057124_+	transcriptional regulator	NA	NA	NA	NA
VEF38644.1\|4057120_4058392_+\|integrase	phage integrase	NA	NA	NA	NA
VEF38645.1\|4058416_4058854_+\|transposase	transposon Tn5044/Tn3926 transposase	NA	NA	NA	NA
VEF38646.1\|4058860_4061410_+\|transposase	transposon Tn5044/Tn3926 transposase	A0A1B0V7H9	Salmonella_phage	3.3e-74	27.8
VEF38647.1\|4061826_4062072_+	anaerobic benzoate catabolism transcriptional regulator	NA	NA	NA	NA
VEF38648.1\|4063040_4063949_-	transmembrane protein	NA	NA	NA	NA
VEF38649.1\|4064046_4064850_+	AraC family transcriptional regulator	NA	NA	NA	NA
VEF38650.1\|4064809_4065718_-	LysR family transcriptional regulator	NA	NA	NA	NA
VEF38651.1\|4065925_4066321_+	lactoylglutathione lyase family protein	NA	NA	NA	NA
VEF38652.1\|4066498_4067026_+	Uncharacterised protein	NA	NA	NA	NA
VEF38653.1\|4067042_4068197_+	NADPH dehydrogenase	NA	NA	NA	NA
VEF38654.1\|4069484_4069757_+	Uncharacterised protein	NA	NA	NA	NA
VEF38655.1\|4070308_4071337_-	Uncharacterised protein	NA	NA	NA	NA
VEF38656.1\|4071571_4072177_-	Uncharacterised protein	NA	NA	NA	NA
VEF38657.1\|4072325_4073300_-	cointegrate resolution protein	NA	NA	NA	NA
VEF38658.1\|4073405_4074482_+\|integrase	integrase	NA	NA	NA	NA
4077718:4077732	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134324

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection