CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134328	Bacillus freudenreichii strain NCTC4823 genome assembly, chromosome: 1	6 crisprs	WYL,RT,csa3,cas3,DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,c2c10_CAS-V-U3	0	14	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134328_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134328_1

373158-373235

Orphan

Consensus_repeat	Method
CGGTAACTAAGAGAAGGCCTAAGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134328_1

>merge|LR134328|1|373158-373235|CRISPRCasFinder
CGGTAACTAAGAGAAGGCCTAAGTGACCGAGTCGTCGGAAAAAGCTCCGTCCCGGTAACTAAGAGAAGGCCTAAGTGA

>LR134328|1|1|373158-373235|CRISPRCasFinder
CGGTAACTAAGAGAAGGCCTAAGTGA	CCGAGTCGTCGGAAAAAGCTCCGTCC
CGGTAACTAAGAGAAGGCCTAAGTGA

Protein	Signature genes	Signature genes Name	Protein_function
LR134328.1\|VEF46361.1\|376388_376709_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
LR134328.1\|VEF46354.1\|364971_368148_+\|SNF2-helicase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|223627
LR134328.1\|VEF46368.1\|383112_384495_-\|glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
LR134328.1\|VEF46349.1\|360751_360907_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134328.1\|VEF46365.1\|380294_380885_+\|BioY-protein	unknown	unknown	gnl\|CDD\|376871
LR134328.1\|VEF46359.1\|373517_374798_-\|uracil-xanthine-permease	unknown	unknown	gnl\|CDD\|236744
LR134328.1\|VEF46362.1\|376857_377664_+\|glyoxalase-family-protein	unknown	unknown	gnl\|CDD\|225312
LR134328.1\|VEF46355.1\|368081_368348_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134328.1\|VEF46352.1\|363210_363546_-\|general-stress-protein	unknown	unknown	gnl\|CDD\|378538
LR134328.1\|VEF46363.1\|377682_378291_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
LR134328.1\|VEF46360.1\|375063_376296_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
LR134328.1\|VEF46356.1\|368608_370096_+\|Catalase	unknown	unknown	gnl\|CDD\|163712
LR134328.1\|VEF46358.1\|371788_372994_+\|sodium:dicarboxylate-symporter	unknown	unknown	gnl\|CDD\|366058
LR134328.1\|VEF46364.1\|378991_379960_+\|transporter,-drug/metabolite-exporter-family	unknown	unknown	gnl\|CDD\|225308
LR134328.1\|VEF46350.1\|360963_361587_-\|nitrilotriacetate-monooxygenase-component-B	unknown	unknown	gnl\|CDD\|224766
LR134328.1\|VEF46357.1\|370519_371749_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|181283
LR134328.1\|VEF46367.1\|382288_383047_+\|YidC/Oxa1-family-membrane-protein-insertase	unknown	unknown	gnl\|CDD\|179310
LR134328.1\|VEF46351.1\|361729_363025_+\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|236456
LR134328.1\|VEF46353.1\|363651_364728_-\|mechanosensitive-ion-channel-MscS	unknown	unknown	gnl\|CDD\|225803
LR134328.1\|VEF46366.1\|380899_381910_+\|biotin-synthase	unknown	unknown	gnl\|CDD\|235755

Protein	Function_ID	Function_description	E-value
LR134328.1\|VEF46361.1\|376388_376709_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	5.07501e-34
LR134328.1\|VEF46354.1\|364971_368148_+\|SNF2-helicase-associated-domain-containing-protein	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	1.16396e-103
LR134328.1\|VEF46368.1\|383112_384495_-\|glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
LR134328.1\|VEF46365.1\|380294_380885_+\|BioY-protein	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	7.63999e-34
LR134328.1\|VEF46360.1\|375063_376296_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
LR134328.1\|VEF46362.1\|376857_377664_+\|glyoxalase-family-protein	gnl\|CDD\|225312	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only].	3.67418e-97
LR134328.1\|VEF46353.1\|363651_364728_-\|mechanosensitive-ion-channel-MscS	gnl\|CDD\|225803	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	6.23754e-48
LR134328.1\|VEF46352.1\|363210_363546_-\|general-stress-protein	gnl\|CDD\|378538	pfam11009, DUF2847, Protein of unknown function (DUF2847). Some members in this bacterial family of proteins with unknown function are annotated as YtxJ, a putative general stress protein. This cannot be confirmed.	9.36015e-47
LR134328.1\|VEF46351.1\|361729_363025_+\|allantoate-amidohydrolase	gnl\|CDD\|236456	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed.	0
LR134328.1\|VEF46356.1\|368608_370096_+\|Catalase	gnl\|CDD\|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
LR134328.1\|VEF46366.1\|380899_381910_+\|biotin-synthase	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
LR134328.1\|VEF46364.1\|378991_379960_+\|transporter,-drug/metabolite-exporter-family	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	1.12648e-09
LR134328.1\|VEF46350.1\|360963_361587_-\|nitrilotriacetate-monooxygenase-component-B	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	6.69786e-39
LR134328.1\|VEF46357.1\|370519_371749_+\|threonine-synthase	gnl\|CDD\|181283	PRK08197, PRK08197, threonine synthase; Validated.	0
LR134328.1\|VEF46363.1\|377682_378291_+\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	1.3446e-105
LR134328.1\|VEF46359.1\|373517_374798_-\|uracil-xanthine-permease	gnl\|CDD\|236744	PRK10720, PRK10720, uracil transporter; Provisional.	0
LR134328.1\|VEF46358.1\|371788_372994_+\|sodium:dicarboxylate-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	8.91388e-128
LR134328.1\|VEF46367.1\|382288_383047_+\|YidC/Oxa1-family-membrane-protein-insertase	gnl\|CDD\|179310	PRK01622, PRK01622, membrane protein insertase YidC.	1.15533e-91

>LR134328.1|VEF46358.1|371788_372994_+|sodium:dicarboxylate-symporter
MKKNFMLQIFAAFILAIIAGIIFGERATVVQPLGDLFLRLIKFIIVPLILSTIVVGVTSAGSIKKLGNLGGKAIGYFLVTSFIAIAIGLFAGFVFQPGAGVELTVPTSEVEALETGGVIATLLNIIPTNPIEALTTGAVLQIIFFAIFLGIGISLVGEKAQPVQQFFEGLSEVMYKITGIIMKLVPLGIFGLLAPIVGTYGPSVLMPLIKVIIAMVVAVIVHVALIYSAAVKTLGKMNPYHFFKGIFPAASVAFATCSSSGTLPVTMKNTQENLGVSKETSSFVLPLGATINMDGTAIYQGIAVMFIAQYFGVELTMAQILIVALMGTLASIGAAGVPGAGLIMLTMVLTAVNLPLEGIALIAGIDRILDMFRTSVNIMGDASACVVVEGGKAKAAVKKGA
>LR134328.1|VEF46357.1|370519_371749_+|threonine-synthase
MTFSFVTQLSCSKCSHVYSSDLVHQLCKCGFPLLVNYDLEALAKVLKPKDLLQRSHDLWRYHELLPIKRPENVVSLGEGMTPLLPMPKLGADMGISHLYMKDEGMAPTGTFKARGAAVGVSKAKELGVKGLVMPTNGNAGAAWSVFSSRAGIQSVIIMPKDAPAMIRSEVAAANSNLFLVDGLISDAGRIAAKAAADFQLYDVSTLKEPYRIEGKKTMGLEIAEQLGWETPDVIIYPAGGGVGLIAIHKAFKELQKLGWLNSGRMPRFVAVQAEGCAPIVKAWDEKKSESEFWPDSRTVAFGINVPKALGDFLVLQAIYETNGCALAVGDDEILGEQKHIIGKEGAFICPEGAAAFLAARKLRESGWMRGNERVVVINTGMGLKYVDRGESTLPVLQRDESISSLPVLP
>LR134328.1|VEF46356.1|368608_370096_+|Catalase
MSEDQKKKKLTTAAGAPVTDNQDSLTAGPRGPMLLQDVWFLEKMAHFDREVIPERRMHAKGSGAYGTFTVTHDISQYTKAKIFSEVGKKTDMFVRFSTVAGERGAADAERDIRGFAVRFYTEEGNWDIVGNNTPVFFFRDPLKFPDLNHAVKRDPRTNMRSANNNWDFWSSLPEALHQVTIVMSDRGIPKSYRHMHGFGSHTFSMINAENERVWVKFHFRSQQGIENLTDDEAIELVGKDRESHQRDLYENIEKGNYPKWKMYIQVMTEEQAEKMPYNPFDLTKVWYKGDFPLIEVGEFELNKNPDNYFAEVEQAAFTPANVVPGIGFSPDRMLQGRLFSYGDAQRYRLGVNHHQIPVNQPRCPVHSFHRDGAMRVDGNMGSTLHYEPNSYGEWQEQREHQEPPLALHGAADRWNFREDDDNYYEQPGKLFNLMSKEQQQALFLNTAANIGPADKHIQIRHIIHCFKADPAYGQGVADALEIPWSEIEAELGVRN
>LR134328.1|VEF46355.1|368081_368348_-|Uncharacterised-protein
MQQQSRGKLRKLSQGFPHVKPINSFISSSAQSYNIEGCTAYFPFFAPVSIQKNSHQKRQLLISLNSSYILKISLISSSDKLESIVSPG
>LR134328.1|VEF46354.1|364971_368148_+|SNF2-helicase-associated-domain-containing-protein
MALLQKNQVAEMFHPSIYRRGREYYFQDRVGKLNFDYESGICRTFVEGTHSYLVEVNLRDLPENIAVYCDCPAFDQHYECKHIVAAMLEICEKQDEIMKVRGTSYGGKYHAAADLIQLLDAGSPGQPVIPSLGSKPLKIEYHCDFSNPQALFVELKVGVDHAYVVRDVGEFIGNVKAGCEHPFTKKFTYSPEEHEIDPADMDVLNELQQIIENEKLYAEGIKSYYANPSIYSNARSIMIPPLFVRSLLEKLIERKTIGKLGSRTFEEIRITDGEFPFQYELGKNAENDLELMLPQIENAVYMEPYELVFLDGDIYFPQPELLPFIDKIIRLQKRNSKISIAADQADAFVSEVLPRLKKLGSVQVAEKVKEQIIQVPLTAKAYIDLEDDTIQAKLEYEYGDITVNPFYQHEESGKILIRDVEKEKEIMNIIENAGMRYNGKELHLQLDEDELYEFLFVILPALGERCELFLTNNIRRIVSLEQPVPKTSINTEESAGLLEISFQLDGIDDDEIADIMRTAIEKKRFYRMKNGTFLSLETDEFQSLQELFTDLRVSKDEVAQGSVHVPIYRGLQVDEALRTKKQYDPSFKKLLDHLKKPEEQTFPLPEGLQASMREYQKTGYQWFRSLSHYHLGGILADDMGLGKTLQSIAYLLSEKGENRHLIVAPASLIYNWQSEWNKFAPGVKTAVVSGAREEREKVLAEGEADVYITSYSTLRQDIDLYKNEQFHTLILDEAQFIKNHTTKSAAAVRSIRATRKFALSGTPIENSVDELWGIFQAIMPGLFPGLKDFKKLEPEKISHIIKPFILRRLKSDVLKELPEKIESTHITELSKEQKELYVGYLQRIQEETAASLQGEGFQKSRMKILAGITRLRQLCCHPSLFLENYEGKSGKLEQLMETVITSIENGKKLLIFSQFTSMLEIIQQELIKAGYPHFYLNGKTPAQERLRMSEQFNNGENSIFLISLKAGGTGLNLTAADTVILYDLWWNPAVEDQAAGRAHRFGQKNVVQVIRLITKGTIEEKIYQLQQKKRELIEQVIQPGETMLSSLSEEDIKEILSM
>LR134328.1|VEF46353.1|363651_364728_-|mechanosensitive-ion-channel-MscS
MEDNQLIHGLDFLKNLSLKDILLFFVYVFIIFAVKWTIIFILKKIYRADSAQSSVVPTAKSLLNWLAFYGTIILFLFYFSKEKWLFSPIYRVKGIDVSLLLILVSIMIITLANRLAKIFNAHVMPVAYEKFHVDAGAGYTINRLIYYTVMIIAVMTSFALVGFNWKAIAVVFSTLGIGVGFGLRNVAANFISGLIILFEKPLEVGEVIEVDGQTGVVTKIKLRSTSVKLYKEGTLIIPNQYLIENMIRNLANEKLYANISVGVAYGTDSSMMDALLQEIAIQGIEGEKGVLSEPPPSVRFTGIKESALEFIIEIPVKNSEAKEKIENKIRHMIISSFYKNKIRLANLPIEVEEDNKGD
>LR134328.1|VEF46352.1|363210_363546_-|general-stress-protein
MSDLKQITSETEWESVLQNSNEKPVFLFKHSTTCPVSANAFKEYQDFSTDLDKYYLIVSESRPVSNQVAEDLEIKHESPQIFLLNGGKAAWNTSHWNITEKNMKEALEANA
>LR134328.1|VEF46351.1|361729_363025_+|allantoate-amidohydrolase
MRKFFSKERLLEELSDCPSYEGIDPIEVAEKLSKLAEIGKTEAGGVSRFPYTNEESRAKKLFSEWMMDIGLSVNEDAVGNLYGRLEGKEPGLPAVLTGSHLDSVPNGGAFDGPLGCVSSLLAIKALAQSNTPMKRTIELVVFVDEEGARFNNSLFGSRTMMGEVKKEDLTLFEDKTGKTLAEAMKENGFDPKNISAAYRNPKEIHAFLELHIEQGKRLESEGKNIGVVNGIAGPVWTSYTFFGETDHAGNTPMKFRKDTVAAASEFILAVEKAPREYSETAVATVGRMNIFPNGTNVIAGKTEVMVDARDIDVAARDQMLDALKKEAEDIAQKRGLNVEIKEEVKIPPVAVPEKIQGAVRSAAETSGLTAVDIPSGAGHDAMIMGKYVPSGMIFVPSHNGKSHSPEEWTSLPDCVNGVQVLKEALNELANE
>LR134328.1|VEF46350.1|360963_361587_-|nitrilotriacetate-monooxygenase-component-B
MITLDPTELRGKDIYKLLTGSIVPRPIAFVTTKSTVNGAINAAPFSFFNVVSSDPPLISLSIGRRKGSTMKDTARNAIKNGELVVHISTEDIIEDINETAALLPAARSELELTGLNIVESTRVSVPGILEAKVRFECKLEQHHEIKNDPGDTVLDFLIARIVYIHMDEKVYDPQKGYVFTENLRPVARLAGSEYAELGKVYSLIRPE
>LR134328.1|VEF46349.1|360751_360907_-|Uncharacterised-protein
MKKHDQEQFRRLSKLNLKRKPKEEVLEWSPTGYGFISSVSHTETEVNSDDY
>LR134328.1|VEF46359.1|373517_374798_-|uracil-xanthine-permease
MSQREIQVDERLPILQSLPLSFQHLFAMFGSTVLVPLLFQVDPATILLMNGLGTLLYIFITKGKIPAYLGSSFAFLSPVFAVLSKYTGGEGYAYALGGFLAVGVTLVIVALIVKVVGTAWIDVIFPPAAMGAIVAVIGLELVPVAANMAGLVKPADAPDTWATDPQVITVSLLTLGITIVCWVTMRGFLKIIPILLGIVSGYIIALSMNMVDLTAVREAAWISAPTYYAMKFNWADILLILPAALVLVPEHIGHLVVTGNIVKKDLVKDPGLDRSMMSNGISTIISSFVGSTPNTTYGENIGVLAITRVYSTWIIGIAAVIAVLLSFCGKLAALISSIPTPVMGGISLLLFGIIAVSGIRMLVEANVDYNISHNMILTCVVLAIGISGASIKIGNVPLSGMGLATVVAIILSLFFRLLEKLKLTNE
>LR134328.1|VEF46360.1|375063_376296_-|peptidase-T
MKNEIIDRFTSYVKVDTQSDENSDTCPSTPGQLTLANQLVNELELIGMTEVSIDENGYVMATLPSNTKKDVPTIGFLAHVDTATDFTGKGVTPQVVENYDGKDIILNKEKQIVLSPDEFPSLLDCKGHTLVTTDGTTLLGADNKAGVAEIITAMDYLLKHPEIKHGKIRVAFTPDEEIGRGPHRFDVEAFNASFAYTVDGGKVGQLEYESFNAASAKLTVKGTNIHPGTAKGIMVNSQKIAIEFHNRLPADEVPELTEGYEGFYHLLSFEGNVEETVLHYIIRDFDREKFEAKKSFMNRIAEELGEKYGTDRVNLEMKDQYYNMREKIEPVKEIVDIASDAMKKLGIEPEISPIRGGTDGSQLSFMGLPTPNIFTGGENFHGPYEFVSVDTMIKSVMTIVEIVKLFEERA
>LR134328.1|VEF46361.1|376388_376709_-|transcriptional-regulator
MNGNTCPRLEKAMSILGQRWTGLIIYQLLNGPQRFCTVEAAMPISARVLSERLKDLEKEGIVKRQVYPETPVRIEYSLTEKGMALQPIMNEISSWAEHWVEVPAEE
>LR134328.1|VEF46362.1|376857_377664_+|glyoxalase-family-protein
MTVQNVERMLAFYTDILGFRVHEQSPGAASLTADGKTVLLKLEEDTEAKVRNPRTTGLYHIAFLLPKRADLADVLKHLAQTRYPLQGASDHDVSEALYLADPEGNGIEIYIDRDAASWKWENDQVFMTTKPLDIENLMENATEAGWTGMPAETVNGHIHLQVSDLEDSKEFYCNGIGFDPVLRYGSQALFISWYKYHHHIGLNTWNSAGQGPPKEKSTGLKHFTILFSDEDERRAAIARVKEQNAWISDEGGTIITKDPSGIKVILEV
>LR134328.1|VEF46363.1|377682_378291_+|nitroreductase-family-protein
MIKTDQGFYAAVKERRSIYGISKESPVSNEKIEELIEHAIKHAPSAFNSQSARVVLLLGENHDKLWNISEAVLREIVPEDQFEPTAQKMASFRNGYGTVLFFEDKKVVEGLQEQFPTYADKFPDYALQSSGMLQYIVWTALELEGFGATLQHYQPLIDEAVQEIWGVPESWTLLAQMPFGKPTAAPGEKQFQSMDERFKVFK
>LR134328.1|VEF46364.1|378991_379960_+|transporter,-drug/metabolite-exporter-family
MNVKSTRKAGKGVGLGATSAVAWGIDTVIIGVIIASTPFKQATVLAPIIAAFMHDFFSSLWISLLMIVKGEYINVLKLIKTKSGAILALGALSGGPLAMTFYFLGIQYAGVTYTASIASIFPGIGALLAFFFLKEKMYGRTWLGVILNIVGVIILAYVPSKFNVESSFIIGILFALGAAIFWGLEGVIGAWGMKGKEDVPPVPLYAVNIRQMTSALCYGILIVPFIHGYPLVFQAASSKIVLIIVIAGLLGAANYSLYYMSIDLIGAARGQSLNNTYVFWAIVIEIIFIGTPINVQFVIGTVIVLLGSVLVSGNPKKVESKT
>LR134328.1|VEF46365.1|380294_380885_+|BioY-protein
MGSEVIKTKSRLKTLDMIYISLFSALMMIGANITSFVPFMVIGGVPITLQAFFAVLAGAFLGSRLGAISMAVYAFIGLAGAPVFARFHGGIGQLFSPTFGFIIAFIFTAYITGKIIEKNSRAYSFVIAALIGTAFSYLFGTNWMYAAYKLWAAAPDAFSYKVAWMWMMVPLPKDILLAILAGLFAHRMQGVVKRSR
>LR134328.1|VEF46366.1|380899_381910_+|biotin-synthase
MNLFDVIAEVSLAGRELTDEQAMAVLDCPDDELLSLLNAAYKVRRHFYGNKVKLNMIINTKSGLCPENCGYCAQSIVSKAPIEKYSMMKKDEIVAGATRAAELNAGTYCIVASGRGPANRELDIVVDAVKEIKDKHEGMTVCACLGILKPDQAERLKEAGVDRYNHNINTSSSHHENITTSHTYDDRVNTVEAAKESGISPCSGVIIGMKESKEDVIDMARSLKVLDADSIPVNFLHAVDGTPLEGTDELNPRYCLKVLCLFRFINPTKEIRISGGREVNLRSLQPLGLYPANSIFIGDYLTTEGQEGSRDWKMLEDMGFEVDREPLNREIAKALT
>LR134328.1|VEF46367.1|382288_383047_+|YidC/Oxa1-family-membrane-protein-insertase
MKKIILLLMLVMTTTMLGGCSGVTNQAGFFYDSFVQPFAWLIHEIGTVLGGNFGLALIIITLLIRLILMPFMLKTYKNQQLMKVKMDKLKPEMEEIQKRSKQAKTKEEQQKVQMEMMELYKKHEVNPLNMGCLPMLIQMPILMGLYYAIRSSTEIASHTFLWFNLGHSDLFMTIIAGLVYLVQAQVSLSTVPEAQKNQMRLFSFISPFMIVFISLNAPAALPLYWAVGGIFLIIQTWIGRKYYKQHPEKAEE
>LR134328.1|VEF46368.1|383112_384495_-|glutamate-dehydrogenase
MAMIMEMEAHKLQTAKKYIESVYDTVKERNAHEPEFLQAVQEIFHSLLPVLVKNPKYMENGILERIVEPERMISFRVPWVDDKGKVRVNRGFRVQFNGTLGPFKGGLRFHPSVNASIIKFLGFEQIFKNALTGQAIGGGKGGSDFDPKGKSDGEVMRFTQSFMTELSKYIGSGIDVPAGDIGVGAREIGYLFGQYRRVAGHYDAGVLTGKGIGYGGSLGRTEATGYGLVYFVHEMLKDKGLSFDGSTVVISGSGNVSIYAIEKAQAYGAKVVACSDSNGYIYDEKGICLDTLKHLKEVERSRISEYVNEHPHAKYIEGSEGIWTIPCDIALPCATQNELNKKAAKTLVANGVKAVGEGANMPTTHDAAEVFLKNDILYAPGKASNAGGVAVSALEMAQNSSRIAWSLEKVDAELKKIMVDIYRNSVEASEEYGESGNLVAGANIAGFTKVADAMIVQGVI

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Crispr_ID: LR134328_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134328_2

3582561-3585453

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	PILER-CR
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CRISPRCasFinder
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CRT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	PILER-CR

43 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of LR134328_2

>merge|LR134328|2|3582561-3585453|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
ATTTCAATCCACACACTCACAAGGAGTGCGACGTTGCGGTTGAGTGCATGGTGTCAACCAAATCCCGATTTCAATCCACACACTCACAAGGAGTGCGACGTTAAACGCCAACATGCTGATAAAAGAGGTTGAAATTTCAATCCACGCACTCACAAGGAGTGCGACACAACGGCACACACATGACCCGGGAGATCCGTTCCAATTTCAATCCACGCACTCACAAGGAGTGCGACGTGGATCGTGTAACACCAGCAAACACACAACTAGATTTCAATCCACGCACTCACAAGGAGTGCGACACAAGGTCCAGCTGGTCCTACTGGTCCACAAGGTATTTCAATCCACGCACTCACAAGGAGTGCGACAAATATACACATACACAAGATGATAATGTAGTTTGTATTTCAATCCACGCACTCACAAGGAGTGCGACGGATTTTTCAGTTTTGATGATACGATTGATCCAATTTCAATCCACGCACTCACAAGGAGTGCGACACGAATCACTTTTTGTTGCCAGGATAACCATTCAATTTCAATCCACGCACTCACAAGGAGTGCGACTTATTAGTGCCGCGCATGAAGACATGAGATTTGATTTCAATCCACGCACTCACAAGGAGTGCGACTTGAGTTGTGTGAGCAATATTCCATTGATCCACTATTTCAATCCACGCACTCACAAGGAGTGCGACGGCAATTCGAAATAAGGGATAATGCGTAGTTCGGAATTTCAATCCACGCACTCACAAGGAGTGCGACGGGATTGCCTGATCGCTCGTTGGTCCGTAGAACGATTTCAATCCACGCACTCACAAGGAGTGCGACTAAATATTTAATGTGAGTTGATTATGATTATGTTATTTCAATCCACGCACTCACAAGGAGTGCGACCAAGGATTATCAAGTTCAGGTTAATGCCAAGTCTAAATTTCAATCCACGCACTCACAAGGAGTGCGACGAAGTCCTAGAGTTTTTATTACAGCAACAAGAGGTTATTTCAATCCACGCACTCACAAGGAGTGCGACATGCAGTATTTAAAGTGACTGCAATCGGACCCTTTATTTCAATCCACGCACTCACAAGGAGTGCGACCAACAGGAAATTACAAGAGTGCCAGAGTAGCTGCAATTTCAATCCACGCACTCACAAGGAGTGCGACGGCGGGCTTTGACGTTACGTTGATCGGATTAGAATTTCAATCCACGCACTCACAAGGAGTGCGACTGTTAGGCCGGTAATGACGGGCCATGCGATTTTATTTCAATCCACGCACTCACAAGGAGTGCGACCTGACATACGACGGAGTTACATTCGAAGGTACGCCGATTTCAATCCACGCACTCACAAGGAGTGCGACCATCATCAGTAGTTTTCATTATGATGTTGTTATTTATTTCAATCCACGCACTCACAAGGAGTGCGACGATGGACGAAAGAAAGAGCCATTAACACACCATTAAATTTCAATCCACGCACTCACAAGGAGTGCGACAAATTGGTGTCAGTTGAGAAAGTATGCAGCGTGATATTTCAATCCACGCACTCACAAGGAGTGCGACTGGACGGGGTGTCCGAGGTGTGAGAGCGAGAGTGTATTTCAATCCACGCACTCACAAGGAGTGCGACCGCAAACATCAATGAGGACATCACAATGTACAAGATTTCAATCCACGCACTCACAAGGAGTGCGACGTGAAGCTGATAGAGTTGTAGATCAGCTGAATGAAAATTTCAATCCACGCACTCACAAGGAGTGCGACATAGAAATGTAAGTCCTTTGTTGGTGCTGTAAATATTTCAATCCACGCACTCACAAGGAGTGCGACGGGTCGTAGTCGAGGCCGGCCGGCCGCTGCAATTCCATTTCAATCCACGCACTCACAAGGAGTGCGACGCGCTTTTAACGATCCTTGCCCACTCAATGTAATTATTTCAATCCACGCACTCACAAGGAGTGCGACCGGCAGACTTTTGCAACCTTTGGATATTCCTGTTATTTCAATCCACGCACTCACAAGGAGTGCGACGTCGAGCAGGACGGTGAACGATTTTACCTTTTCGATTTCAATCCACGCACTCACAAGGAGTGCGACGCGGATGGCTACCAAAGTATGTAAATCTTGCAATATTTCAATCCACGCACTCACAAGGAGTGCGACGGTGCATAAGCGCTTGGTCTCCGGACTGCATACGATTTCAATCCACGCACTCACAAGGAGTGCGACTTTAATGGTTTATGGGAATAATATTGCTTTTCCGATTTCAATCCACGCACTCACAAGGAGTGCGACGTCGTTTGTAAAATCGTCTTTAATCAGCAGACGGATTTCAATCCACGCACTCACAAGGAGTGCGACCTTCCGCCATTCTTCCCACAAGTCGCCACGCTTGGAATTTCAATCCACGCACTCACAAGGAGTGCGACGGTCGGACGTATCGTAGCGCCAACAGTCGGACAGGATTTCAATCCACGCACTCACAAGGAGTGCGACACGCAGGGTCGGCGGTTAATACGTCGAGTCAGGCATTTCAATCCACGCACTCACAAGGAGTGCGACTACAAGCGATTGGCGGACGAGTTTGGTGACGAAATTTCAATCCACGCACTCACAAGGAGTGCGACGCGTCTGCTGCACCGGTGACAACTGGATTGACGAATTTCAATCCACGCACTCACAAGGAGTGCGACTGAAACGTGAGTGCCTTTTGCCGCATAAATCTCCTATTTCAATCCACGCACTCACAAGGAGTGCGACATCAACAATGTAGGTTTCTTGTCTTTCAAGCTCAATTTCAATCCACGCACTCACAAGGAGTGCGACGGAAAAAATCTCAAAATTAAAAGACTTGAGTATGATTTCAATCCACGCACTCACAAGGAGTGCGAC

>LR134328|2|1|3582561-3585453|PILER-CR
ATTTCAATCCACACACTCACAAGGAGTGCGAC	GTTGCGGTTGAGTGCATGGTGTCAACCAAATCCCG
ATTTCAATCCACACACTCACAAGGAGTGCGAC	GTTAAACGCCAACATGCTGATAAAAGAGGTTGAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACAACGGCACACACATGACCCGGGAGATCCGTTCCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTGGATCGTGTAACACCAGCAAACACACAACTAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACAAGGTCCAGCTGGTCCTACTGGTCCACAAGGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAATATACACATACACAAGATGATAATGTAGTTTGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGATTTTTCAGTTTTGATGATACGATTGATCCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACGAATCACTTTTTGTTGCCAGGATAACCATTCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTATTAGTGCCGCGCATGAAGACATGAGATTTG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTGAGTTGTGTGAGCAATATTCCATTGATCCACT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGCAATTCGAAATAAGGGATAATGCGTAGTTCGGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGGATTGCCTGATCGCTCGTTGGTCCGTAGAACG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TAAATATTTAATGTGAGTTGATTATGATTATGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CAAGGATTATCAAGTTCAGGTTAATGCCAAGTCTAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GAAGTCCTAGAGTTTTTATTACAGCAACAAGAGGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATGCAGTATTTAAAGTGACTGCAATCGGACCCTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CAACAGGAAATTACAAGAGTGCCAGAGTAGCTGCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGCGGGCTTTGACGTTACGTTGATCGGATTAGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGTTAGGCCGGTAATGACGGGCCATGCGATTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CTGACATACGACGGAGTTACATTCGAAGGTACGCCG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CATCATCAGTAGTTTTCATTATGATGTTGTTATTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GATGGACGAAAGAAAGAGCCATTAACACACCATTAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAATTGGTGTCAGTTGAGAAAGTATGCAGCGTGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGGACGGGGTGTCCGAGGTGTGAGAGCGAGAGTGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGCAAACATCAATGAGGACATCACAATGTACAAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTGAAGCTGATAGAGTTGTAGATCAGCTGAATGAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATAGAAATGTAAGTCCTTTGTTGGTGCTGTAAAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGGTCGTAGTCGAGGCCGGCCGGCCGCTGCAATTCC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCGCTTTTAACGATCCTTGCCCACTCAATGTAATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGGCAGACTTTTGCAACCTTTGGATATTCCTGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTCGAGCAGGACGGTGAACGATTTTACCTTTTCGATTTCAATCCACGCACTCACAAGGAGTGCGACGCGGATGGCTACCAAAGTATGTAAATCTTGCAATATTTCAATCCACGCACTCACAAGGAGTGCGACGGTGCATAAGCGCTTGGTCTCCGGACTGCATACGATTTCAATCCACGCACTCACAAGGAGTGCGACTTTAATGGTTTATGGGAATAATATTGCTTTTCCGATTTCAATCCACGCACTCACAAGGAGTGCGACGTCGTTTGTAAAATCGTCTTTAATCAGCAGACGGATTTCAATCCACGCACTCACAAGGAGTGCGACCTTCCGCCATTCTTCCCACAAGTCGCCACGCTTGGAATTTCAATCCACGCACTCACAAGGAGTGCGACGGTCGGACGTATCGTAGCGCCAACAGTCGGACAGGATTTCAATCCACGCACTCACAAGGAGTGCGACACGCAGGGTCGGCGGTTAATACGTCGAGTCAGGCATTTCAATCCACGCACTCACAAGGAGTGCGACTACAAGCGATTGGCGGACGAGTTTGGTGACGAAATTTCAATCCACGCACTCACAAGGAGTGCGACGCGTCTGCTGCACCGGTGACAACTGGATTGACGAATTTCAATCCACGCACTCACAAGGAGTGCGACTGAAACGTGAGTGCCTTTTGCCGCATAAATCTCCTATTTCAATCCACGCACTCACAAGGAGTGCGACATCAACAATGTAGGTTTCTTGTCTTTCAAGCTCAATTTCAATCCACGCACTCACAAGGAGTGCGACGGAAAAAATCTCAAAATTAAAAGACTTGAGTATG
	GCGGATGGCTACCAAAGTATGTAAATCTTGCAAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGTGCATAAGCGCTTGGTCTCCGGACTGCATACG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTTAATGGTTTATGGGAATAATATTGCTTTTCCG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTCGTTTGTAAAATCGTCTTTAATCAGCAGACGG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CTTCCGCCATTCTTCCCACAAGTCGCCACGCTTGGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGTCGGACGTATCGTAGCGCCAACAGTCGGACAGG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACGCAGGGTCGGCGGTTAATACGTCGAGTCAGGC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TACAAGCGATTGGCGGACGAGTTTGGTGACGAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCGTCTGCTGCACCGGTGACAACTGGATTGACGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGAAACGTGAGTGCCTTTTGCCGCATAAATCTCCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATCAACAATGTAGGTTTCTTGTCTTTCAAGCTCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGAAAAAATCTCAAAATTAAAAGACTTGAGTATG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC

>LR134328|2|2|3582561-3585453|CRISPRCasFinder
ATTTCAATCCACACACTCACAAGGAGTGCGAC	GTTGCGGTTGAGTGCATGGTGTCAACCAAATCCCG
ATTTCAATCCACACACTCACAAGGAGTGCGAC	GTTAAACGCCAACATGCTGATAAAAGAGGTTGAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACAACGGCACACACATGACCCGGGAGATCCGTTCCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTGGATCGTGTAACACCAGCAAACACACAACTAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACAAGGTCCAGCTGGTCCTACTGGTCCACAAGGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAATATACACATACACAAGATGATAATGTAGTTTGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGATTTTTCAGTTTTGATGATACGATTGATCCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACGAATCACTTTTTGTTGCCAGGATAACCATTCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTATTAGTGCCGCGCATGAAGACATGAGATTTG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTGAGTTGTGTGAGCAATATTCCATTGATCCACT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGCAATTCGAAATAAGGGATAATGCGTAGTTCGGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGGATTGCCTGATCGCTCGTTGGTCCGTAGAACG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TAAATATTTAATGTGAGTTGATTATGATTATGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CAAGGATTATCAAGTTCAGGTTAATGCCAAGTCTAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GAAGTCCTAGAGTTTTTATTACAGCAACAAGAGGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATGCAGTATTTAAAGTGACTGCAATCGGACCCTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CAACAGGAAATTACAAGAGTGCCAGAGTAGCTGCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGCGGGCTTTGACGTTACGTTGATCGGATTAGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGTTAGGCCGGTAATGACGGGCCATGCGATTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CTGACATACGACGGAGTTACATTCGAAGGTACGCCG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CATCATCAGTAGTTTTCATTATGATGTTGTTATTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GATGGACGAAAGAAAGAGCCATTAACACACCATTAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAATTGGTGTCAGTTGAGAAAGTATGCAGCGTGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGGACGGGGTGTCCGAGGTGTGAGAGCGAGAGTGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGCAAACATCAATGAGGACATCACAATGTACAAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTGAAGCTGATAGAGTTGTAGATCAGCTGAATGAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATAGAAATGTAAGTCCTTTGTTGGTGCTGTAAAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGGTCGTAGTCGAGGCCGGCCGGCCGCTGCAATTCC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCGCTTTTAACGATCCTTGCCCACTCAATGTAATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGGCAGACTTTTGCAACCTTTGGATATTCCTGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTCGAGCAGGACGGTGAACGATTTTACCTTTTCG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCGGATGGCTACCAAAGTATGTAAATCTTGCAAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGTGCATAAGCGCTTGGTCTCCGGACTGCATACG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTTAATGGTTTATGGGAATAATATTGCTTTTCCG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTCGTTTGTAAAATCGTCTTTAATCAGCAGACGG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CTTCCGCCATTCTTCCCACAAGTCGCCACGCTTGGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGTCGGACGTATCGTAGCGCCAACAGTCGGACAGG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACGCAGGGTCGGCGGTTAATACGTCGAGTCAGGC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TACAAGCGATTGGCGGACGAGTTTGGTGACGAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCGTCTGCTGCACCGGTGACAACTGGATTGACGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGAAACGTGAGTGCCTTTTGCCGCATAAATCTCCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATCAACAATGTAGGTTTCTTGTCTTTCAAGCTCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGAAAAAATCTCAAAATTAAAAGACTTGAGTATG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC

>LR134328|2|1|3582561-3585453|CRT
ATTTCAATCCACACACTCACAAGGAGTGCGAC	GTTGCGGTTGAGTGCATGGTGTCAACCAAATCCCG
ATTTCAATCCACACACTCACAAGGAGTGCGAC	GTTAAACGCCAACATGCTGATAAAAGAGGTTGAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACAACGGCACACACATGACCCGGGAGATCCGTTCCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTGGATCGTGTAACACCAGCAAACACACAACTAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACAAGGTCCAGCTGGTCCTACTGGTCCACAAGGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAATATACACATACACAAGATGATAATGTAGTTTGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGATTTTTCAGTTTTGATGATACGATTGATCCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACGAATCACTTTTTGTTGCCAGGATAACCATTCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTATTAGTGCCGCGCATGAAGACATGAGATTTG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTGAGTTGTGTGAGCAATATTCCATTGATCCACT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGCAATTCGAAATAAGGGATAATGCGTAGTTCGGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGGATTGCCTGATCGCTCGTTGGTCCGTAGAACG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TAAATATTTAATGTGAGTTGATTATGATTATGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CAAGGATTATCAAGTTCAGGTTAATGCCAAGTCTAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GAAGTCCTAGAGTTTTTATTACAGCAACAAGAGGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATGCAGTATTTAAAGTGACTGCAATCGGACCCTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CAACAGGAAATTACAAGAGTGCCAGAGTAGCTGCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGCGGGCTTTGACGTTACGTTGATCGGATTAGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGTTAGGCCGGTAATGACGGGCCATGCGATTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CTGACATACGACGGAGTTACATTCGAAGGTACGCCG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CATCATCAGTAGTTTTCATTATGATGTTGTTATTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GATGGACGAAAGAAAGAGCCATTAACACACCATTAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAATTGGTGTCAGTTGAGAAAGTATGCAGCGTGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGGACGGGGTGTCCGAGGTGTGAGAGCGAGAGTGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGCAAACATCAATGAGGACATCACAATGTACAAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTGAAGCTGATAGAGTTGTAGATCAGCTGAATGAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATAGAAATGTAAGTCCTTTGTTGGTGCTGTAAAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGGTCGTAGTCGAGGCCGGCCGGCCGCTGCAATTCC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCGCTTTTAACGATCCTTGCCCACTCAATGTAATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGGCAGACTTTTGCAACCTTTGGATATTCCTGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTCGAGCAGGACGGTGAACGATTTTACCTTTTCG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCGGATGGCTACCAAAGTATGTAAATCTTGCAAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGTGCATAAGCGCTTGGTCTCCGGACTGCATACG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTTAATGGTTTATGGGAATAATATTGCTTTTCCG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTCGTTTGTAAAATCGTCTTTAATCAGCAGACGG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CTTCCGCCATTCTTCCCACAAGTCGCCACGCTTGGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGTCGGACGTATCGTAGCGCCAACAGTCGGACAGG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACGCAGGGTCGGCGGTTAATACGTCGAGTCAGGC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TACAAGCGATTGGCGGACGAGTTTGGTGACGAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCGTCTGCTGCACCGGTGACAACTGGATTGACGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGAAACGTGAGTGCCTTTTGCCGCATAAATCTCCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATCAACAATGTAGGTTTCTTGTCTTTCAAGCTCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGAAAAAATCTCAAAATTAAAAGACTTGAGTATG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC

>LR134328|2|2|3584627-3585453|PILER-CR
	GTTGCGGTTGAGTGCATGGTGTCAACCAAATCCCG
ATTTCAATCCACACACTCACAAGGAGTGCGAC	GTTAAACGCCAACATGCTGATAAAAGAGGTTGAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACAACGGCACACACATGACCCGGGAGATCCGTTCCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTGGATCGTGTAACACCAGCAAACACACAACTAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACAAGGTCCAGCTGGTCCTACTGGTCCACAAGGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAATATACACATACACAAGATGATAATGTAGTTTGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGATTTTTCAGTTTTGATGATACGATTGATCCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACGAATCACTTTTTGTTGCCAGGATAACCATTCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTATTAGTGCCGCGCATGAAGACATGAGATTTG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTGAGTTGTGTGAGCAATATTCCATTGATCCACT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGCAATTCGAAATAAGGGATAATGCGTAGTTCGGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGGATTGCCTGATCGCTCGTTGGTCCGTAGAACG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TAAATATTTAATGTGAGTTGATTATGATTATGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CAAGGATTATCAAGTTCAGGTTAATGCCAAGTCTAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GAAGTCCTAGAGTTTTTATTACAGCAACAAGAGGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATGCAGTATTTAAAGTGACTGCAATCGGACCCTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CAACAGGAAATTACAAGAGTGCCAGAGTAGCTGCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGCGGGCTTTGACGTTACGTTGATCGGATTAGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGTTAGGCCGGTAATGACGGGCCATGCGATTTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CTGACATACGACGGAGTTACATTCGAAGGTACGCCG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CATCATCAGTAGTTTTCATTATGATGTTGTTATTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GATGGACGAAAGAAAGAGCCATTAACACACCATTAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	AAATTGGTGTCAGTTGAGAAAGTATGCAGCGTGAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGGACGGGGTGTCCGAGGTGTGAGAGCGAGAGTGT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGCAAACATCAATGAGGACATCACAATGTACAAG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTGAAGCTGATAGAGTTGTAGATCAGCTGAATGAAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATAGAAATGTAAGTCCTTTGTTGGTGCTGTAAAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGGTCGTAGTCGAGGCCGGCCGGCCGCTGCAATTCC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCGCTTTTAACGATCCTTGCCCACTCAATGTAATT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CGGCAGACTTTTGCAACCTTTGGATATTCCTGTT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTCGAGCAGGACGGTGAACGATTTTACCTTTTCGATTTCAATCCACGCACTCACAAGGAGTGCGACGCGGATGGCTACCAAAGTATGTAAATCTTGCAATATTTCAATCCACGCACTCACAAGGAGTGCGACGGTGCATAAGCGCTTGGTCTCCGGACTGCATACGATTTCAATCCACGCACTCACAAGGAGTGCGACTTTAATGGTTTATGGGAATAATATTGCTTTTCCGATTTCAATCCACGCACTCACAAGGAGTGCGACGTCGTTTGTAAAATCGTCTTTAATCAGCAGACGGATTTCAATCCACGCACTCACAAGGAGTGCGACCTTCCGCCATTCTTCCCACAAGTCGCCACGCTTGGAATTTCAATCCACGCACTCACAAGGAGTGCGACGGTCGGACGTATCGTAGCGCCAACAGTCGGACAGGATTTCAATCCACGCACTCACAAGGAGTGCGACACGCAGGGTCGGCGGTTAATACGTCGAGTCAGGCATTTCAATCCACGCACTCACAAGGAGTGCGACTACAAGCGATTGGCGGACGAGTTTGGTGACGAAATTTCAATCCACGCACTCACAAGGAGTGCGACGCGTCTGCTGCACCGGTGACAACTGGATTGACGAATTTCAATCCACGCACTCACAAGGAGTGCGACTGAAACGTGAGTGCCTTTTGCCGCATAAATCTCCTATTTCAATCCACGCACTCACAAGGAGTGCGACATCAACAATGTAGGTTTCTTGTCTTTCAAGCTCAATTTCAATCCACGCACTCACAAGGAGTGCGACGGAAAAAATCTCAAAATTAAAAGACTTGAGTATG
	GCGGATGGCTACCAAAGTATGTAAATCTTGCAAT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGTGCATAAGCGCTTGGTCTCCGGACTGCATACG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TTTAATGGTTTATGGGAATAATATTGCTTTTCCG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GTCGTTTGTAAAATCGTCTTTAATCAGCAGACGG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	CTTCCGCCATTCTTCCCACAAGTCGCCACGCTTGGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGTCGGACGTATCGTAGCGCCAACAGTCGGACAGG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ACGCAGGGTCGGCGGTTAATACGTCGAGTCAGGC
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TACAAGCGATTGGCGGACGAGTTTGGTGACGAA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GCGTCTGCTGCACCGGTGACAACTGGATTGACGA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	TGAAACGTGAGTGCCTTTTGCCGCATAAATCTCCT
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	ATCAACAATGTAGGTTTCTTGTCTTTCAAGCTCA
ATTTCAATCCACGCACTCACAAGGAGTGCGAC	GGAAAAAATCTCAAAATTAAAAGACTTGAGTATG
ATTTCAATCCACGCACTCACAAGGAGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134328.1\|VEF49367.1\|3588469_3590365_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
LR134328.1\|VEF49371.1\|3593839_3595438_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
LR134328.1\|VEF49365.1\|3586953_3587634_-\|RecB-family-exonuclease	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
LR134328.1\|VEF49359.1\|3579797_3580592_-\|Domain-of-uncharacterised-function-(DUF477)	unknown	unknown	gnl\|CDD\|224429
LR134328.1\|VEF49352.1\|3573813_3573909_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134328.1\|VEF49354.1\|3575249_3576200_+\|auxin-efflux-carrier	unknown	unknown	gnl\|CDD\|223751
LR134328.1\|VEF49369.1\|3591130_3593545_-\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134328.1\|VEF49370.1\|3593646_3593856_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134328.1\|VEF49361.1\|3581751_3582429_-\|phage-shock-protein-PspA	unknown	unknown	gnl\|CDD\|224755
LR134328.1\|VEF49366.1\|3587599_3588469_-\|CRISPR-associated-protein,-Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
LR134328.1\|VEF49368.1\|3590365_3591091_-\|CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
LR134328.1\|VEF49358.1\|3578796_3579780_-\|Putative-virion-core-protein-(lumpy-skin-disease-virus)	unknown	unknown	gnl\|CDD\|226711
LR134328.1\|VEF49364.1\|3585925_3586957_-\|CRISPR-associated-protein-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
LR134328.1\|VEF49372.1\|3595587_3595953_-\|monovalent-cation/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237147
LR134328.1\|VEF49355.1\|3576219_3577185_+\|UV-endonuclease-UvdE	unknown	unknown	gnl\|CDD\|235029
LR134328.1\|VEF49356.1\|3577280_3577829_+\|putative-autoinducer-2-export-protein-AI-2E	unknown	unknown	gnl\|CDD\|225204
LR134328.1\|VEF49357.1\|3577880_3578669_-\|L-aspartate-dehydrogenase	unknown	unknown	gnl\|CDD\|237342
LR134328.1\|VEF49363.1\|3585625_3585916_-\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LR134328.1\|VEF49353.1\|3573927_3575163_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|314467
LR134328.1\|VEF49360.1\|3580588_3581617_-\|phage-replication-protein	unknown	unknown	gnl\|CDD\|336978

Protein	Function_ID	Function_description	E-value
LR134328.1\|VEF49367.1\|3588469_3590365_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	2.82329e-169
LR134328.1\|VEF49371.1\|3593839_3595438_-\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	3.49436e-165
LR134328.1\|VEF49365.1\|3586953_3587634_-\|RecB-family-exonuclease	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.37581e-30
LR134328.1\|VEF49359.1\|3579797_3580592_-\|Domain-of-uncharacterised-function-(DUF477)	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	8.30765e-38
LR134328.1\|VEF49354.1\|3575249_3576200_+\|auxin-efflux-carrier	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.59446e-27
LR134328.1\|VEF49369.1\|3591130_3593545_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.62815e-68
LR134328.1\|VEF49364.1\|3585925_3586957_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
LR134328.1\|VEF49366.1\|3587599_3588469_-\|CRISPR-associated-protein,-Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	8.19907e-127
LR134328.1\|VEF49368.1\|3590365_3591091_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	5.02959e-94
LR134328.1\|VEF49358.1\|3578796_3579780_-\|Putative-virion-core-protein-(lumpy-skin-disease-virus)	gnl\|CDD\|226711	COG4260, COG4260, Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism].	1.40066e-133
LR134328.1\|VEF49361.1\|3581751_3582429_-\|phage-shock-protein-PspA	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	1.05231e-42
LR134328.1\|VEF49372.1\|3595587_3595953_-\|monovalent-cation/H+-antiporter-subunit-G	gnl\|CDD\|237147	PRK12586, PRK12586, Na+/H+ antiporter subunit G.	2.41407e-51
LR134328.1\|VEF49355.1\|3576219_3577185_+\|UV-endonuclease-UvdE	gnl\|CDD\|235029	PRK02308, uvsE, putative UV damage endonuclease; Provisional.	1.29351e-144
LR134328.1\|VEF49356.1\|3577280_3577829_+\|putative-autoinducer-2-export-protein-AI-2E	gnl\|CDD\|225204	COG2322, COG2322, Predicted membrane protein [Function unknown].	1.90811e-58
LR134328.1\|VEF49357.1\|3577880_3578669_-\|L-aspartate-dehydrogenase	gnl\|CDD\|237342	PRK13303, PRK13303, aspartate dehydrogenase.	8.71817e-80
LR134328.1\|VEF49363.1\|3585625_3585916_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.73685e-31
LR134328.1\|VEF49353.1\|3573927_3575163_-\|Uncharacterised-protein	gnl\|CDD\|314467	pfam11579, DUF3238, Protein of unknown function (DUF3238). This family of proteins with unknown function appears to be restricted to Bacillus cereus.	0.007421
LR134328.1\|VEF49360.1\|3580588_3581617_-\|phage-replication-protein	gnl\|CDD\|336978	pfam08271, TF_Zn_Ribbon, TFIIB zinc-binding. The transcription factor TFIIB contains a zinc-binding motif near the N-terminus. This domain is involved in the interaction with RNA pol II and TFIIF and plays a crucial role in selecting the transcription initiation site. The domain adopts a zinc ribbon like structure.	0.00320118

>LR134328.1|VEF49361.1|3581751_3582429_-|phage-shock-protein-PspA
MGILARFKDIMSSNINALLDKAENPEKMIDQYMRNLNSDLGKVKAETASVMAEEQRSKRALHECSADIEKMQSYAVKALEAGNDDDARKFLEKKASLAEKEAELQQAYSLAASNAVRMREMHDKLVSDIGELEARRTMIKSKMAVAKTQERLNKIGSSVTGANRSMSAFDRMEEKVEKALDEANAMAELNAEPKDDIKDLTAKYDSRPDVEDELAALKEQIKNKE
>LR134328.1|VEF49360.1|3580588_3581617_-|phage-replication-protein
MVIHYKCPNCGDDMGFDSDSGMLTCQSCGREDHIEEFAEDLNMAVLTDDEAKEYHCENCGAMLITEAETAATTCSFCGAGVVLQERLSGALAPAKVIPFTISKEEAMQAFKKWCRNGRLTPKGFMTADRIKGITGMYVPFWLYDLNTKAKVEAVATKVRTYTSGDYEYTETKYFDVYRDIDLSYLKVPVDASEKMDDKIMDKLEPYPYDQLKDFKTPYLAGYIAEKYNFDDKELYPRVEAKIQKFIDTYISSTITGYSSVSYNHKHINTKKVRSYYVLLPVWMVYYDYDKTEHTFAMNGQTGKVVGKPPISVSRVATWFGGIAGTSFVTLKLISIAMGGGLW
>LR134328.1|VEF49359.1|3579797_3580592_-|Domain-of-uncharacterised-function-(DUF477)
MRSNFFKKTLILVVFFLFLPFAFATADTPAKQRIYDDAGLLSDTEVKELEKLAEKHGAKRETDFIILTTNNEKNIDVVEYMQNFYDEKAPGYDKPHGNTAILTLDMKNRDVYVAGFYKAKTYLDNHRATLVREKITSALSSGDYYKAFGSFIKTSSKYMGIRPGVNPDNILFNLWFQIIASLVIAGGAVGIMAFNIGGRVTVNARTYQDNENTRVKHRRDQYIRTTTTKRRKPSNKSSGSGFGGGGGGGMTRGGHSHSGSRGKF
>LR134328.1|VEF49358.1|3578796_3579780_-|Putative-virion-core-protein-(lumpy-skin-disease-virus)
MMSFFRSQFANVVEWEEFRDDMIFWKWSNREIKKGSRLIIQPGQDAIFINNGKIEGIFQEEGDYNIESQIIPFLSTLKGFKFGFNSGMRVEVLFVNTKEFTVKWGTKNPINIPTPQLPGGMPIRANGTFNFKVNDYIALIDKIAGVKDRYLVEDVKIRITSILDQLLMKWISKEGKDMFNLQANALEIAQGIKTDLDMQIIDSGMTITGFNIMSFNYPKEIQDMITKTASHGMIGDLQKYQQVSMTDGIASGKVKGGGTAADMAGMMMGMGMAGQMMKNMNQAQQEQVPNQSGAPSSSGGKIPNFCPNCGEKTSGGNFCSNCGQKLV
>LR134328.1|VEF49357.1|3577880_3578669_-|L-aspartate-dehydrogenase
MNIGLIGAGTMGKFLLEKLNIDQLIPNYRIISVLDEREKAEEIMPSLSGKYEFTFFDKLDSFLNSGIDLIVESSNIETVQKYAYRILCEKDMLVISVGALADSVFLKKLESAAEENDTKLYLPAGAIGGLDAIKAAGIMEDLHSVTLVTRKPGEALSGGEITEERVLFNGSAKEAIARFPENANVAITLSLAGIGVEKTEVKIIADPKVNKNTHTIQASGDFGKMEFTLQNNPSPDNPKTSHLTALSILSSLRSLQGQVVIG
>LR134328.1|VEF49356.1|3577280_3577829_+|putative-autoinducer-2-export-protein-AI-2E
MNNNNYAAGHVKRNYRPAIIAISVVLIGAIGVLSGMPGVEDFDAFDVTILPLMNAILNSFTFLFLLGALIAIMKRNVKVHRRFIYAAFVTTFFFLITYVAFHFLSPSTPYGGSGLLAGIYYFILITHILLAAAIVPLALTSVARAWNMENERHRKIARWTMPIWLYVSLTGVLVYVMISPYY
>LR134328.1|VEF49355.1|3576219_3577185_+|UV-endonuclease-UvdE
MTKVRLGYVAMSMELQNASPSKTMTFAQFLKLNDRDAAIRKLERIALENLHNTLRLLRHNAVNDIHFYRMTSRLIPLATHEELSDWNFISPLKEKLRELGDFVKKHDMRVDFHPDHFVLINSMKEDVLKNSVKNLNLHRLLLRGMGIDTVHRCVMHVGGNYKDTEKSLERFVDNWMLVPYPIQKMIMLENDDTSFTMEDTLYVCEKLGIPLVFDYHHHLAHHQNPDWQENWGRVVDTWSFSPLPIKMHISSPKSEKAFRHHADFVDVDMFFRFLNEIKGTVSQIDCMIEAKQKDQALFTLMEQCKQKGDVEIIDGSSFWLK
>LR134328.1|VEF49354.1|3575249_3576200_+|auxin-efflux-carrier
MISSGLFFQEMLTLYCIAILGWTARKRNILCKKSIGVLTQLLLYITLPALILHSLNIELSMGLLKDFIRLITMSAYICILSAMLAAYFNKKARLPAHQKSVYESLMIFGNQGFIGYAVSFILLGETGIIYLTVFNICYLVFIWAYGIHLFTRKKDAVNWRAVLVNPGILSTVIGLVLLFLPFTWPSFLAGTLESVGKMTVPLSMILVGALVANVKLKVLLTSLKNKYLWASSMLRIFFFPLLLLPFAALPIPFPVMMTAFIVSGMPSAPTICIYAQKYGGDSLFASLGVLITTALCILTIPILYLILTHTLPLISS
>LR134328.1|VEF49353.1|3573927_3575163_-|Uncharacterised-protein
MFRRYLIPLISLIGTALVVIGKKLQPKMSYPKGFPIESIEQTINEVTFYLKNEKSPLRIYRDGTLIYEGDDESFTDINLAAGTTYLYTIEAGARRGTPERIKVQTSTAEESRQSENLLEDCIQTAIISKSFFGMEWEPIEGVEEYLIYRNGKRIAKVQEPFFVDRWVRSQMEYTYLIHAERPLPELEEGLDEQIRLRTDPKEKDAVMEIFEISKVLDPLEDILNSRDAKTERKEWRFLYKTFWGERWIKNPKEGSPYRYFKGDGRGFDSASTDYRSMAEIVVTGDEPFPDVQLAKDIGETKGYGMLRNLKKEETASDEGIQLEDVKVEETEVTYVLKHSVENPLADSLAVDYQVSARLQPNGFYDFSGVHDRSLNHEVYLKHGVQRTWTTLHQAEDEGMEAPLYWRVSNFR
>LR134328.1|VEF49352.1|3573813_3573909_-|Uncharacterised-protein
MVPGLFIHKSSELNDLTTQSTESQDKKEHSW
>LR134328.1|VEF49363.1|3585625_3585916_-|CRISPR-associated-protein-Cas2
MLVLITYDVSTTTPEGRKRLRQVSKKCLDYGQRVQNSVFECVLDSTQLKQLKYQLEEIINKETDSLRFYNLGKNYKSKVDHIGAKESYDIEGTLII
>LR134328.1|VEF49364.1|3585925_3586957_-|CRISPR-associated-protein-Cas1
MKKLLNTLFITSPDVYLSLDGENVIVRKENEVLGRYPLHNLEAICTFGYAGASPALMGACAKRDISITFMTRNGNFLARVIGESKGNVILRKEQYRISDDEKRSAVVSRNFILGKIYNAKWILERATRDYPLRVDVPKIKSITSTLTETMKAVRTAEDLETLRGLEGNAAVQYNSVFDDLILQQKDHFFFTHRNKRPPLDNVNALLSFTYTMLSNDVKAALESVGLDAYVGFLHRDRPGRASLALDMMEELRGVYADRFVLSLINKKVVNHKGFFRKESGAIIMDDDTRRKVLAAWQEKKQEKIQHPYLNEKVPWGLVPYAQALLLARHIRGDLDEYPPFFWK
>LR134328.1|VEF49365.1|3586953_3587634_-|RecB-family-exonuclease
MASKLKNMTAYKEEEYLLLSGIQHFIFCKRQWALIHIEQQWAENVRTVEGQHLHKRADQPMIREKRGKKLVVRGLPVHSRELGITGVCDVVEFIQNPAGVSLVNEEGTYIPVPVEYKRGKPKKDDSDILQLTAQAICLEEMLVCEIPKGYLFYGEIKKRVEVPITGYYREQVKKNFAEMHQFFRKKYTPKVKSGPHCRNCSLQNICLPSILKKRPVSSYIEGRLKE
>LR134328.1|VEF49366.1|3587599_3588469_-|CRISPR-associated-protein,-Csd2
MTILDRKIDFAVVLTVRNANPNGDPLNGNRPRQNYDGFGEISDVCIKRKIRNRLQDMGESILVQSDERRSDGYRSIKDRVDSNEELQQYSKGKKKDSLIYEKIACESWMDVRSFGQVFAFSGSEVSIGVRGPVSIHTAVSLAPIDISSMQITKSVNSTTNTKDPDKKTSDTMGMKHRVDFGVYVFYGSINTQLAEKTGFTFEDAEKIRESLITLFENDASSARPDGSMEVNKVFWWQHKTKMGQYSSAKVHRSFEINLKEGLNEAKSFEDYNISLHQLDGLEAQEYDGL
>LR134328.1|VEF49367.1|3588469_3590365_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG
MTWLKNLYDTYENNQHLIGEFEKTTNDREFALIPISHTTQTAQIEVSLDDKGNFVTAKVVDKNDASTIIPCTEASASRSGTMPPPHPLHDKLIFVAGDYLKYGGAAKKYSPHNDYMKQLKKWCESEYAHPKVQSVYQYLSKGCLIEDLIEEKIIYVDENEKFIEKWTNSIKEKYGDKPELFKVVSSSQSDAFVRFAVNKIGEPESRLWRDSSVHESFIQYYKSVLQDEDWCYVTGEQLPITERHASRIRHSADMSKLISANDTSGFTFRGRFKKSQEAAAISYEVSQKAHNALKWLISKQGFTIDGKVFLVWGTAGLDLPNPHDDSDSLGIYDEESETSGDSTHQEFAGQVQKAIAGYRHDTDYKSKVIIMLVDAATPGRMAIVYYRDMDKELFLNRLESWHKTCFWLHRYKKDDDKKTVIFMGAPATKDIAFAAYGSKASDKLVKGLVERMLPSIIDGRKIPVDIVRSAFNRASNPVGIEKWEWEKTLSITCALINKTYEKEGLSVGLDVNNDHRDYLFGRMLAIADVLERSALDNDEKRATNAIRYMNAFSQHPSRTWSIIQANIQPYQARLGTRLSYHNKLLDEVGSKLKPVDFNDKPLSGLYLLGFYSQRNELYKSRKEKDAEKGEI
>LR134328.1|VEF49368.1|3590365_3591091_-|CRISPR-associated-protein-Cas5
MRNKIEFEVYGKYALFTDPLTKIGGEKMSYQIPTYQSLKGIIESIYWKPTILWIIDEVRVMNPIRTESKGIRPIKFQNKKTDLAYYTYLRDVRYQVKAHFIFNPHRPDLDFDRNEHKHHNIAKRAVKVGGRRDIFLGSRECQGYVEPCDFGEGEGYYDNYEGQIDFGVMVHGINYPDETGKNQMETRLWRPVMRDGYIKFIRPDECTLIRPIGEMSPKDFNQTNIQSVDELYHEVVQESGD
>LR134328.1|VEF49369.1|3591130_3593545_-|CRISPR-associated-helicase-Cas3
MDYIAHIREKDGEIQTVQEHLEGVSLLSEKFGKKVGVKNLAGIAGLLHDLGKNTEEFKSYIEEAVKNPDNPPAKGSVDHSTAGGKLLYKLFHNKNNNSWEKLTSEWIAMCIISHHSGLRNYLTPDMSSEFLNRVAEKEIEEFGNATATFFKSQITEQELEQQFYEAVDEVKQIINTMKENKLQSISMSFIIKYIFSCLIDADRTDTRMFEENEQSEPFFDSKNFFETSYHFLMERISLYSRSKDAEHPINILRSNMSDQCEQFAFRPSGIYTLSIPTGGGKTLASLRYALKHAIEFNKDRIIYVVPYTTIIEQNAQEVRDILKDNDHILEHHSNVIEEVSFDNESYDLKKKKLKLAKDNWDSPIIFTTMVQFLNVFYSKGTRNIRRLHNLSNSIIIFDEVQSVPIKCISLFNEALNFLKTYAKSSIVLCTATQPALDFVENDLKISTNSEMVQDMKQVTKSFKRVNVIDRTTPQGVNAAELKEFIEEKMDTVNSLLVILNTKSAVRKLFEELDNKAGRYKLFHLSTSMCPAHRKDILSEVRKSLTNGERVVCLSTQLIEAGVDISFECVIRSLAGLDSIAQAAGRCNRHGKDEIRNVYIIKSSDENLSHLKEISIGADQTKRILQEFQEQPEKLGNDLLSPKAMETYFRYYFHQIKNELDYPISELKKNAFDLLNQNQDYYKAFEHKNGYKLPLMSRQSFATVEKHFNVIDSPTTSLLVPYNEEAKEIISDLNGELEIKELGEILKKAQQFIVNVYKHELDQLSEENNIDFLMHGNIFALKEIAYREDIGIDLEGEGSWSFATI
>LR134328.1|VEF49370.1|3593646_3593856_-|Uncharacterised-protein
MYIKNKQGGASCKGEHCFFIEELFGIYGVLTFNLPMLKGTDKESNFKSIEVTFSRKVIERKFIPLYYWV
>LR134328.1|VEF49371.1|3593839_3595438_-|amidohydrolase
MTKTIFTKGKIYTLERNQPFVESVAVENGKVIDLGSHDDMISQWGRHDAKIVDLQGKTVTPGLIDSHLHLSGVAFQFLDLNLVGVGSKKEMLEKIRERANENEPGKWLSGLGFDENLFADGGLPTIQELDEAAPHCPLFIKRVCHHAFLVNSKALEMIQYHPSMEVPTGGSIVLDPNTQQPTGLLLESASTLVTDRMPEKTYDELKRGLTLAMEHAMQRGLTSVHTNDPRYLGGFDQTYKMYDELLIQEKKGLRCNLLIDYSYLNRLRERGMYAGYGNDTLQIGAIKIFADGALGRRTALLSQPYQDAPNEYGEAMQDKEKLYQMVKESRAHSMPVAIHTIGDQAVEDVLQVLDQFSSVKYRDRIIHVSLLREDLIQRLAKPSLVADIQPRFVVGDYPWVQERLGKERIKYLYAWKSLLSAGVLCAGGSDAPVEPIDPLLGMHAALTQRHPEDSHEGWNEKEKLSIQEALEVFTIGGAYATNEEDKKGTIARGKLADMTVYSRELFEIEHPDELLDTDIEMTIIGGEIVYQK
>LR134328.1|VEF49372.1|3595587_3595953_-|monovalent-cation/H+-antiporter-subunit-G
MNVSEIDEFIGAFLILIGSVISVISAMGIIRFPDVYTRAHAATKSTTLGVQLSLVGAFIYIWMTEHFISVRLILGILFVFITAPVSGHLIIRAAYRSKVKMTEDTIEDELKAVLDNKMDVH

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Crispr_ID: LR134328_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134328_3

3709400-3709506

Orphan

Consensus_repeat	Method
GCATTAGGACATCCTGTCCGTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134328_3

>merge|LR134328|3|3709400-3709506|CRISPRCasFinder
GCACTAGTACTTCCTGTACGTCGTCGGCATTAGGACATCCTGTCCGTCGGCAGGCTCAAGCAGCGACGTCCTGTGCTTCGCCTGCACTAGGACATCCTGTCCGTCGG

>LR134328|3|3|3709400-3709506|CRISPRCasFinder
GCACTAGTACTTCCTGTACGTCGT	CGGCATTAGGACATCCTGTCCGTCGGCAGGCTCAAGCAGCGACGTCCTGTGCTTCGCCT
GCACTAGGACATCCTGTCCGTCGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134328.1\|VEF49460.1\|3695840_3696122_-\|CopG-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223932
LR134328.1\|VEF49473.1\|3713928_3714726_-\|oxalate/formate-antiporter	unknown	unknown	unknown
LR134328.1\|VEF49461.1\|3696647_3697817_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
LR134328.1\|VEF49465.1\|3704239_3704602_-\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
LR134328.1\|VEF49469.1\|3707587_3709033_-\|DEAD/DEAH-box-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223587
LR134328.1\|VEF49471.1\|3711040_3712084_-\|D-alanine/D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
LR134328.1\|VEF49478.1\|3719129_3720392_-\|transposase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
LR134328.1\|VEF49462.1\|3698412_3700164_-\|adenine-deaminase	unknown	unknown	gnl\|CDD\|223933
LR134328.1\|VEF49470.1\|3709642_3711025_-\|UDP-N-acetylmuramoylalanyl-D-glutamyl-2,-6-diaminopimelate/D-alanyl-D-alanyl-ligase	unknown	unknown	gnl\|CDD\|223841
LR134328.1\|VEF49463.1\|3700191_3701559_-\|sulfate-permease-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|225161
LR134328.1\|VEF49476.1\|3718044_3718635_+\|membrane-phosphatase	unknown	unknown	gnl\|CDD\|224159
LR134328.1\|VEF49468.1\|3706738_3707221_-\|YdbS	unknown	unknown	gnl\|CDD\|225937
LR134328.1\|VEF49475.1\|3716578_3717871_+\|hemolysin	unknown	unknown	gnl\|CDD\|224173
LR134328.1\|VEF49479.1\|3720988_3721180_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
LR134328.1\|VEF49466.1\|3704678_3705281_+\|sporulation-membrane-protein-and-putative-endopeptidase-YdcA	unknown	unknown	gnl\|CDD\|366759
LR134328.1\|VEF49464.1\|3702002_3703022_-\|putative-lipoprotein	unknown	unknown	gnl\|CDD\|225390
LR134328.1\|VEF49474.1\|3714769_3716194_+\|magnesium-(Mg2+)-transporter	unknown	unknown	gnl\|CDD\|129495
LR134328.1\|VEF49477.1\|3718743_3718896_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|223837
LR134328.1\|VEF49467.1\|3705264_3706746_-\|YdbT	unknown	unknown	gnl\|CDD\|225962
LR134328.1\|VEF49472.1\|3712509_3713685_+\|C4-dicarboxylate-transport-protein	unknown	unknown	gnl\|CDD\|366058

Protein	Function_ID	Function_description	E-value
LR134328.1\|VEF49460.1\|3695840_3696122_-\|CopG-family-transcriptional-regulator	gnl\|CDD\|223932	COG0864, NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription].	5.89444e-16
LR134328.1\|VEF49461.1\|3696647_3697817_-\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	6.73794e-158
LR134328.1\|VEF49465.1\|3704239_3704602_-\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	3.73338e-47
LR134328.1\|VEF49469.1\|3707587_3709033_-\|DEAD/DEAH-box-helicase-domain-containing-protein	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	2.55374e-173
LR134328.1\|VEF49471.1\|3711040_3712084_-\|D-alanine/D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	0
LR134328.1\|VEF49478.1\|3719129_3720392_-\|transposase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	2.813e-177
LR134328.1\|VEF49462.1\|3698412_3700164_-\|adenine-deaminase	gnl\|CDD\|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	0
LR134328.1\|VEF49470.1\|3709642_3711025_-\|UDP-N-acetylmuramoylalanyl-D-glutamyl-2,-6-diaminopimelate/D-alanyl-D-alanyl-ligase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	3.51305e-165
LR134328.1\|VEF49463.1\|3700191_3701559_-\|sulfate-permease-family-inorganic-anion-transporter	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	5.03369e-154
LR134328.1\|VEF49476.1\|3718044_3718635_+\|membrane-phosphatase	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	6.04853e-25
LR134328.1\|VEF49468.1\|3706738_3707221_-\|YdbS	gnl\|CDD\|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	5.32433e-47
LR134328.1\|VEF49475.1\|3716578_3717871_+\|hemolysin	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	4.53466e-146
LR134328.1\|VEF49479.1\|3720988_3721180_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	1.1479e-07
LR134328.1\|VEF49466.1\|3704678_3705281_+\|sporulation-membrane-protein-and-putative-endopeptidase-YdcA	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	8.93871e-28
LR134328.1\|VEF49464.1\|3702002_3703022_-\|putative-lipoprotein	gnl\|CDD\|225390	COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane].	1.49061e-34
LR134328.1\|VEF49474.1\|3714769_3716194_+\|magnesium-(Mg2+)-transporter	gnl\|CDD\|129495	TIGR00400, mgtE, Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. [Transport and binding proteins, Cations and iron carrying compounds].	2.00654e-130
LR134328.1\|VEF49477.1\|3718743_3718896_-\|Uncharacterised-protein	gnl\|CDD\|223837	COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane].	0.000764598
LR134328.1\|VEF49467.1\|3705264_3706746_-\|YdbT	gnl\|CDD\|225962	COG3428, COG3428, Predicted membrane protein [Function unknown].	2.06546e-111
LR134328.1\|VEF49472.1\|3712509_3713685_+\|C4-dicarboxylate-transport-protein	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	1.8741e-77

>LR134328.1|VEF49469.1|3707587_3709033_-|DEAD/DEAH-box-helicase-domain-containing-protein
MTKFSDLNLSPSILKAVNRMGFEEATPIQAKTIPLSMEGKDLIGQAQTGTGKTAAFGIPLIQKIDPSDHTVQGIIIAPTRELAIQVSEELYKIAIDSRVRVLAVYGGSDIQRQIRALKKGPQIVVGTPGRVLDHINRRTLKLGNVHTVILDEADEMLNMGFIEDIESILKTVPEERQTLLFSATMPEPIRRIAERFMKSPELVKVQAREMTVPLIEQFFVKVPEREKFDVLSRLIDVQSPELAIVFGRTKRRVDELSNALTVRGYTAEGIHGDLSQAKRLSVLRKFKEGKVDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAVTFVSPREMGYLRIVEQTTKKRMQPLRPPTWDEALEGQQRVTMEKLAETIEEGNLDEYRSTAVDLLNEHDAVEVIAAALKVITKEPDKTPVHITEERPLPSKRDSFQGGDRGGRGRRGKPGGQSSYKGHRKSQRRSGNRRP
>LR134328.1|VEF49468.1|3706738_3707221_-|YdbS
MEIRPPSRRISQRGLKVWRITGALNSLALWLVVVVAGVLTYFFDWPIWITASGAGLVFIITILSIFIIPSIRWKRWRYEVTEHELELQYGVFFIHRTLVPMVRVQHVDTSQGPILKKYDLATVSISTAATVHEIPAVDIHEAEELRRSISALARVAEDDV
>LR134328.1|VEF49467.1|3705264_3706746_-|YdbT
MFEPKRLHPISVLYDFIRSLKELIIPFIFLFIFGKNEIELGFSMLPQLLFLLFVLFMIASMVVKWLRFTYRVEDNELRIEQGLFVRKKRYIPFDRIQSLDLSESIIHRPLGLVKVKVETAGSGGDKAEAELTAIKKEDAASLQKIIADVKNKVPSDVTEEVEAPKEDIIYKISARQLLFLASTSGRAGVVISAFLAFVFQFEDFIPYEKLFNEMQQLIKFGVVFISVVVFIALFIAWLLSVVIAFFKYNDFTVKKVKDELIITRGLLEKRTTTVPLHRIQALTITESPIRQPFGYASVSLESAGGASTDLENSSMVLLPIVKRSEIADLLGGYFTDYAFDTDFSPAPKRSIRRYMFVKSIIALVIAGVVTGFFWPYGLFAAALLPISILWGYTQYKSAGWNIVDQQLTMRYRTIEQHTMLMKKNRIQSMEASISWFQKRADLAAVSAAVKSGAGSRNAEIAHLDEKHALEVLDWYSHRDQGLIDFVETATESE
>LR134328.1|VEF49466.1|3704678_3705281_+|sporulation-membrane-protein-and-putative-endopeptidase-YdcA
MFLRTESFGQFIRLYPVITALVAIHIAIFLAMHLPLFPQQLIFEILAGVNILIQMGEYWRLITPIFVHIAFTHLLFNSFSLVLFGPALERALGKFQFILVYIACGVAANIATLILKPPYYTHIGASGAIFGLFGIYLAITFFKKEAMPQQGKQVILPIAALGVIMTFFQANINITGHISGLIAGFLIGAVLVKIRPIRFL
>LR134328.1|VEF49465.1|3704239_3704602_-|holo-ACP-synthase
MISGIGLDLVETERIKNLRERQARFPERVLSAGELAYYETLPEKRKTEFLAGRFAAKEAFAKARGTGIGSELSFQDIEIMADKLGKPHIVRPADQGERVHLSITHTKAYAAAQVVIEVER
>LR134328.1|VEF49464.1|3702002_3703022_-|putative-lipoprotein
MRKGLWLVWGIVAAMLVLSACGLKSQEDVAKDLKEKVGDIKGYKAKAKMTLEVGDEPQVYDIDVWHHKPGDYRVHLKNAKKEQSQMILRNKSGVYVLTPALNKSYKFQSDWPKNSSQAYLFESLVKDVLDDKEAKFKETKEHYVFETKTRYQNNKMLPTQEVTFKKRSFEPISVKVMDTDKNPVVTVEFTKVDFNAKFDEDAFDTKKNMTSAQLEVPVLAGLSGKDFSVKYAMAEIPGVTLHDEKTMETDRGKRVILTYEGEDKSFTLFQEKAEVIPTASMETVEMSGEMVDLGFAMGVMNDHSIVWSQDGVDYMLASKDLTQEEMIVVARSVQGDSVK
>LR134328.1|VEF49463.1|3700191_3701559_-|sulfate-permease-family-inorganic-anion-transporter
MGMLEKDTGPSVTPPSQNSLLERLFKLSERNTNVRTELLAGLTSFLTMSYIIFVNPAILADAGIPKEAALAATIYASVFCTILMALWANYPVAVAPGMGLNAFFAYTVVLGHGLTWQTALGAVFISGVLFLILTVTGVRQKIVDGVPDVLKSAIGVGIGLFIAFIGFSNAELIVANEATFVSLGDITSLGPILALIGFIIAAVLTAKRIKGALLISILGTSLIAMITGFIGFPKGINDVVSLKLPSMAETFLAMDIKGAIAYGILSVIFSFTIVELFDNLATLIGLTRKAGLVREDGKIENLDRALQADAVGTMASAAFGSTALNAYIENATGIQEGGRTGLTALTAGVLFLLALVFAPLIVFVPSVATAPILILVGALMISEIKNISFDDFTDVIPVFLTIILMPLTYSIATGLAFGFISYTLLKLLTGKASQIHWIMYIVSAAFIINFIMGGG
>LR134328.1|VEF49462.1|3698412_3700164_-|adenine-deaminase
MICTKEMLKKRIDVAAKRVPADLVIKNGKVINVFTREILTEDIAIVDGYIAGTGTFEGYETVDASGKYIVPGFIDGHVHIESAMVIPSEFSNVVLPHGVTTIVADPHEIANVSGTEGIDFMLKASEDIPLEVLLMLPSCVPATPFENAGAALEYSDLEPYYSHPKVIGLGEVMDYPSVLYKDDKMLDKIMDASLKDKHIDGHASGIDADGINVYMSSGIRTDHECVTSEEALIRMRKGMYVMLREGSAAKDLITLLKAVNENNARRCLFVTDDKHLDEIIDEGSIDFNVKTAIQEGLDPLLAIQMATLNAAECFGLKTKGAIAPGYEADFLLLNDLHTVDIDSVYKGGKLVAKDGDVIKPAKSSTAPPAIITDSVNISPVSLEDLKVKMSEGNLANIIKIKPKMIVTNHLIEEVDVIDGYFQPSIGKDQLKIAVIERHYRTGNIGLGIIKGLGIKNGAIASTVAHDSHNIVAAGTNDDDLLKAIQATADMKGGLAVVEDGSLLASLPLPVAGLMSDKDYRVINEQIKELNDALVKIGCSMEFNPFITLAFLALPVIPELKLTDMGLFDVKTFQHIDIEAVSIK
>LR134328.1|VEF49461.1|3696647_3697817_-|alanine-racemase
MNGKTQYFRDTWAEIDLDALYKNVKTIRDGLPRETKLFAAVKANAYGHGDFQIAQEALKAGSHGLVVALLDEALALRQKGIDAPILVLGLIRPTDASVAARHHISVPAFQMDWLKEASQAMESGDPPLKVHIKCDTGMGRIGLKNEKELKEIEHYINNHDSFELEGIFTHFATADQSEENYYLQQLGAFKKLVSSLETPPEYVHAANSAGALCHNDSMFNAVRVGIAIYGLSTSQERTPHIKGKQVFSLHTAIVHVKKIQPGECIGYGAGYQAKKEEWIATIPVGYADGWLRMLEGQRVIADGHRANIVGRICMDQTMIKLPHYMPVGTKVTLIGGQGSDEFITVEEIAEKLQTINYEVTCTINFRVPRLYKRGSQLLGVDNKLLSEDK
>LR134328.1|VEF49460.1|3695840_3696122_-|CopG-family-transcriptional-regulator
MSESNATTEIIIRLPQHLLAELDGFVEQENVNRNEFIYRATKMYIRERKKRQIVESMRRGYMEMAKINLAIASEAIQAEYEAEHTVERLVSGG
>LR134328.1|VEF49470.1|3709642_3711025_-|UDP-N-acetylmuramoylalanyl-D-glutamyl-2,-6-diaminopimelate/D-alanyl-D-alanyl-ligase
MIQRTIGQIAKMIKIENDVTEYAQQEVKGVTIDSRKISPGNLFVPFKGEQTDGHKYAEMALNQGAAAVFWQEDVPNPPTNGPVLVVKDTLLALQALAKAYRDELSVKVVGITGSNGKTTTKDITAAVLGETYRVQKTEGNFNNHIGLPLTILALEETTEIAILEMGMSSRGEISLLTKIARPDAAIITNVGEAHLLDLGSREEIAAAKFEITEGLAPGGLFIYPGNEPLLQEKAATLDNIRLETFGPSAENAAYPLELTIEERGSTFTASNFPNEPLFLPIAGKHNVMNALAALLAAKEFSVPARDVKNGLNSVKLSTMRMEWRNGIKGTTILNDSYNSSPTALRAVIGMLESMDAAKEKIVVLGDMLELGDMEIEFHEQIGEEIDPAKIKYVYTYGNLGKWIAQGAEKNFPAGHVFSFLNQDELIRSLKGKISGGELIVVKASRGMKMEKVVEALAIEK
>LR134328.1|VEF49471.1|3711040_3712084_-|D-alanine/D-alanine-ligase
MKLCLLYGGKSAEHEVSLQTAKAVIHALDKNKFDIFPIFITKQGQWIQGPQITEPVEDVKQLQFSNGGNELMPQSLNAEFDMVFPLLHGPNGEDGTVQGLLEVLNIPYVGNGVLASSAGMDKVVMKNIFAQAGLDQVEYVSFIRSTWEEDREAAYKEVEETIGYPSFVKPANLGSSVGISKCDNREELVAAFEEAFRYDRKIIIEEGVNAREIEVGILGNDELACSVPGEIVPKKDFYDYEAKYADNTTELVIPADIPETDYDTVRDMAFTAYKALDCSGLARMDFFVTPDGRILINEVNTMPGFTPVSMFPLLWKNTGVPYPELIERLVDLGRQRYEEKQKIVHTF
>LR134328.1|VEF49472.1|3712509_3713685_+|C4-dicarboxylate-transport-protein
MKFGLLPRIILAIVLGILIGLVAPNPLIRVFATFNSLFGNFLGFIIPLLIIGFIVPGIGAIGKGAGKLLGWTAAIAYLSTIGAGFLAFFAAKSLFPSMLANQTLQEFANPEEALLKPFFEIEMAPLMGIMTALLLSFVIGIGIAAVKSDVLLNLSNDFRDIIHLVIEKVIIPLLPVHIFGIFANMTNAGQVGSILSIFIKVFAMIIVLHIAYLLIQYTIAGSVQKRNPLSMLKTMSPAYFTALGTQSSAATIPVTLRQGKKIVKKERVADFTIPLLATIHLSGSTITLVSCSMAVMFMQGHSYTFTIMLPFILMLGITMVAAPGVPGGAVMAAIGLLESMLGFGPAMTALMIALYITQDSFGTACNVTGDGAITAVMDKISREDVEKEATV
>LR134328.1|VEF49473.1|3713928_3714726_-|oxalate/formate-antiporter
MIIFVGAISLKNQASRKNIIYIHMNHTARYILSSGIQFPDFMKGIPIKPSNLLLLSHKFEDGYYNMHTRLNFVTGENVEQLAGDEVFRYGNFCWVDFSDEEDLNELTGQELAELLYLSHIKSPLRPPFYRMLGNQFVYLTEEDGNFNKTYYKNWEHFFSMMGVVISHRVSPGREKNLFGRRKYRPAPFVPADILQMLSVQMREGVVFSFERMTADRQKIEVPLWTVGDLMDTDEMLEEYMKQSRRPPEGKIVLDRKAGEWQALLG
>LR134328.1|VEF49474.1|3714769_3716194_+|magnesium-(Mg2+)-transporter
MTYITYSQQLYMPLLNDRKVITVLARNMEKELTLKIIDNIKNEDFDKVNDTFEDCGPETMASIIQNLPERFRGAMLEHLSNSTLASLIQKVNIKLQLEILSKIGPDKANRVLALLNVNFLSRLLRHYPKTDVDSFLKEMKETEASYVRQILKYPDNTAGSLMTNRYVSVNTHFTVGQAVEKLKTLALYSESLNHIYVVDQDGHLAGTVPYRDLIITEPEESVTNVMVEKVISVDVMTKRSEIVRLLQRYDFTALPVVNKDEVLIGIITFDDMVTTIINEAGEDISKISAMNEEIDFDTKPVSAAIRRLPWLIALLFIGLVSGSIISRFEETLEQVVALAFFMPLIAGMTGNTGTQSLAVVVRGLAEKEVDMRTGVKLLWREFRVSLFIGITCGLLIAIIAFVWQHNLYLGIVVGGSLLLTLIIGTFAGTIIPLILYKLKMDPAVASGPLITTVNDIFSLITYFSIATHFLSKLT
>LR134328.1|VEF49475.1|3716578_3717871_+|hemolysin
MLIINIFLVIILIALTAFFVASEFAIVKVRSSRLDQLVAEGNKKATVAKRLVANLDGYLSATQLGITVTALGLGWLGEPTVQVMLNPLFERLDIPNSIASILSFIIAFSSITFIHVVVGELAPKTFAIHKAEAITLAIATPLIWFYKIMFPFIWLLNGAARLIASLFGVKPASESDIAHSEEELRIILSDSLKSGEINQSEYRYVNKIFEFDNRIAKEIMVPRTEVITIDRSASIGEIMSIVKEKRLTRYPVIEEGDKDKILGVVNIKEFLTDCIEGNCQGSEPITRYIMPVISVIETIPIQRLLVKMQRERNHMAILFDEYGGTAGIVTAEDILEEIVGEIRDEFDEDEIPLVRKLDEQHYLLDAKVLIEEVNDLLGIHLRCEDIDTIGGWLLTKKYDLQQGDIIEDEGYKFHVKAMEGNHIIEVEVTP
>LR134328.1|VEF49476.1|3718044_3718635_+|membrane-phosphatase
MISEWLAIIENWLIDYGVLGLLIVSFTDSAFSPIIPEMMLIPMGIASPDKVWLYAFYTTVASVLGALLGWYIGKKLGRPVLLRFIKEDKINKVEYYFERYGAMAILIAAFTPVPYKVFTIFSGISKVKIRTLVFWSILGRGGRFFLEAAIIAALGVRAKPFIEENFAIITLGIGGIAVVAFIVYRLILSRKKTANS
>LR134328.1|VEF49477.1|3718743_3718896_-|Uncharacterised-protein
MHRDHEQLEKIIDSLAEMGVNISVTKSRLELFKVLDEIQAVPGYTEYHLD
>LR134328.1|VEF49478.1|3719129_3720392_-|transposase
MLMERILSRENLLSALKRVERNKGSHGVDEMPVQNLRKHILEHWESMKMELLQGTYEPQPVRRVEIPKPDRGVRLLGIPTVTDRLIQQAIAQVLTSLYDPTFSDHSYGFRPNRSAHDAIRRAKGYIQGGYRWVIDIDLEKFFDRVNHDRLMGTLAKRIEDRRLLRLIRKYLKSGIMIDGVVTTSEEGTPQGGPLSPLLSNIVLDELDKELEERGHKFVRYADDCNIYVKTKKAGNRVMSSVTSFIEGKLKLKVNPNKSEVDRPWKRKFLGFSFTNGKEAKVRIAKESVKRFKNKIREITSRRKPYPMDYRIKKLNQYLMGWCGYFALADTPSLFIKFDSWIKRRLRMCIWKNWKKPRTKVRKLIGLGVPIGKAYEWGNSRKSYWRISKSPILHRTLGNSYWNSQGLKSLISRYEVLRHQS
>LR134328.1|VEF49479.1|3720988_3721180_-|CsbD-family-protein
MRDSDGTKKKLEGTWDKVKGETKDAFGDAVDNERMQAEGKWDKVKGETKKKYGEAKEKFNDWD

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Crispr_ID: LR134328_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134328_5

4081593-4081741

TypeV-U3

Consensus_repeat	Method
CTGTTAATCAAACGTTTGTTTAA	CRISPRCasFinder

2 spacers

c2c10_CAS-V-U3

The CRISPR arrays of LR134328_5

>merge|LR134328|5|4081593-4081741|CRISPRCasFinder
GTCCTAATCAAATGATTGAATAATGCGTTAGAGGGCAGATGAAAATGTTTAATCAAACGTTTGATTAAAAAATGATGTTGTTTTGGCGGACACCCAGGGAACCACCGTGATTCCTGTATTTTTTCCAACTAATCAAACGTTTGATTAGA

>LR134328|5|5|4081593-4081741|CRISPRCasFinder
GTCCTAATCAAATGATTGAATAA	TGCGTTAGAGGGCAGATGAAAA
TGTTTAATCAAACGTTTGATTAA	AAAATGATGTTGTTTTGGCGGACACCCAGGGAACCACCGTGATTCCTGTATTTTTTC
CAACTAATCAAACGTTTGATTAGA

Protein	Signature genes	Signature genes Name	Protein_function
LR134328.1\|VEF49789.1\|4089718_4091200_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143410
LR134328.1\|VEF49772.1\|4072590_4072836_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|367968
LR134328.1\|VEF49780.1\|4079357_4080149_-\|Sulfite-exporter-TauE/SafE	unknown	unknown	gnl\|CDD\|376667
LR134328.1\|VEF49784.1\|4084221_4085070_+\|lipoate-protein-ligase	unknown	unknown	gnl\|CDD\|319742
LR134328.1\|VEF49791.1\|4093195_4094434_-\|N-carbamoyl-L-amino-acid-amidohydrolase	unknown	unknown	gnl\|CDD\|236456
LR134328.1\|VEF49785.1\|4085056_4086001_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
LR134328.1\|VEF49776.1\|4075516_4075951_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134328.1\|VEF49773.1\|4072885_4073389_-\|RDD-family	unknown	unknown	gnl\|CDD\|377640
LR134328.1\|VEF49775.1\|4074162_4075155_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|176227
LR134328.1\|VEF49782.1\|4082265_4083063_-\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143587
LR134328.1\|VEF49778.1\|4076267_4077695_-\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|237031
LR134328.1\|VEF49790.1\|4091768_4093142_-\|aminotransferase	unknown	unknown	gnl\|CDD\|223239
LR134328.1\|VEF49783.1\|4083474_4084053_-\|copper/zinc-superoxide-dismutase	unknown	unknown	gnl\|CDD\|224943
LR134328.1\|VEF49779.1\|4078123_4079200_+\|transposase	c2c10_CAS-V-U3	-	gnl\|CDD\|223747
LR134328.1\|VEF49787.1\|4087518_4088061_-\|ribosomal-protein-serine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
LR134328.1\|VEF49788.1\|4088243_4089581_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
LR134328.1\|VEF49777.1\|4076001_4076208_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134328.1\|VEF49774.1\|4073415_4074000_-\|SAM-dependent-methyltransferase-YrrH	unknown	unknown	gnl\|CDD\|181382
LR134328.1\|VEF49786.1\|4087022_4087448_-\|GCN5-like-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
LR134328.1\|VEF49781.1\|4080170_4081514_-\|MATE-efflux-family-protein	unknown	unknown	gnl\|CDD\|240543

Protein	Function_ID	Function_description	E-value
LR134328.1\|VEF49789.1\|4089718_4091200_-\|aldehyde-dehydrogenase	gnl\|CDD\|143410	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. Also included in this subfamily is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial, homotetramers that oxidize acetaldehyde and glycolaldehyde, as well as, the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Also included is the AldA aldehyde dehydrogenase of Aspergillus nidulans (locus AN0554), the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) of Saccharomyces cerevisiae, and other similar sequences.	0
LR134328.1\|VEF49772.1\|4072590_4072836_-\|Uncharacterised-protein	gnl\|CDD\|367968	pfam04502, DUF572, Family of unknown function (DUF572). Family of eukaryotic proteins with undetermined function.	0.0031068
LR134328.1\|VEF49780.1\|4079357_4080149_-\|Sulfite-exporter-TauE/SafE	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	3.60437e-16
LR134328.1\|VEF49784.1\|4084221_4085070_+\|lipoate-protein-ligase	gnl\|CDD\|319742	cd16443, LplA, lipoate-protein ligase. Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.	4.60874e-60
LR134328.1\|VEF49785.1\|4085056_4086001_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
LR134328.1\|VEF49776.1\|4075516_4075951_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.28086e-09
LR134328.1\|VEF49773.1\|4072885_4073389_-\|RDD-family	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	2.58313e-11
LR134328.1\|VEF49775.1\|4074162_4075155_+\|oxidoreductase	gnl\|CDD\|176227	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	9.12863e-107
LR134328.1\|VEF49782.1\|4082265_4083063_-\|carbon-nitrogen-hydrolase	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	7.29726e-87
LR134328.1\|VEF49778.1\|4076267_4077695_-\|aspartate-ammonia-lyase	gnl\|CDD\|237031	PRK12273, aspA, aspartate ammonia-lyase; Provisional.	0
LR134328.1\|VEF49790.1\|4091768_4093142_-\|aminotransferase	gnl\|CDD\|223239	COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism].	8.044e-177
LR134328.1\|VEF49783.1\|4083474_4084053_-\|copper/zinc-superoxide-dismutase	gnl\|CDD\|224943	COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism].	3.35125e-45
LR134328.1\|VEF49779.1\|4078123_4079200_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.22551e-26
LR134328.1\|VEF49787.1\|4087518_4088061_-\|ribosomal-protein-serine-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	9.76333e-29
LR134328.1\|VEF49788.1\|4088243_4089581_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.21008e-35
LR134328.1\|VEF49791.1\|4093195_4094434_-\|N-carbamoyl-L-amino-acid-amidohydrolase	gnl\|CDD\|236456	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed.	0
LR134328.1\|VEF49774.1\|4073415_4074000_-\|SAM-dependent-methyltransferase-YrrH	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	7.33659e-20
LR134328.1\|VEF49786.1\|4087022_4087448_-\|GCN5-like-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.04768e-12
LR134328.1\|VEF49781.1\|4080170_4081514_-\|MATE-efflux-family-protein	gnl\|CDD\|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.44579e-123

>LR134328.1|VEF49781.1|4080170_4081514_-|MATE-efflux-family-protein
MKQQDFTTGPIGKQLLAFSLPILVTNLLQTSYQFIDSLWVGNLLGANALGAVAVSSTVIFTVLSFIIGVNNATLTVLSQLKGKDDEARLKSFVNAFVIILSVMAIALGLAGFIFSKSILQFLGTPSSMIADAVSYLQINFLGILFLFGYNFISTVFRALGNSKTPVRFVLTAVILNAVLDPLFIYVLDWGIEGAAYATVVAQGTAFVYGLFVSIRFKQIPFSMPKLPKREEASIILKQGIPSGLQMTVISAGLAAIMSVVTSFGPDAVAGFGAAQRLDSIIMLPAHALGTAVNSMAGQNIAIKQWDRVRQITMYALLLNLAAMLLAALIIFVFARWGILMFISDEGAVAFGTEYVKIIAFFYPFLGLNFVWNGVVRASGAMFQVLVLNIISFWVLRYPLTFIFAKLIGERGIGLGIAASFVISSILAFGYYRLGKWRERELFEEAAQ
>LR134328.1|VEF49780.1|4079357_4080149_-|Sulfite-exporter-TauE/SafE
MGAIYFLVGLLASIIGAVAGIGGGIIIKPALDLLSHYDPATIGILSSSTVFMMAAVSLLGTVKSGLRVEKRTSLTLAAGSVIGGIIGQYTFNYLIKAVHQDAAITFSQSGMLALLMLVIFFMVKNKEKMNTYRLHQIFLIILIGFGLGMIGAFLGIGGGPLNIAILTLAFSMGTKEAAANSIFIIFFSQLSSLMLVWLTEGFAGYDLSALVYMLAGGAIGGLIGSFLSNKMPSKWVDLLFQSIIMMIFFLRLPRLKPQALHLR
>LR134328.1|VEF49779.1|4078123_4079200_+|transposase
MQTITLKLELKKPTKEKASMYQKMTEVNTSFSNWLLNFEGLNTATSKVFRLFSDRRLPSAVVNQTIREVKSKKKHQKTKKFRRFWCGFNNQNLHIEKENHLYKVSFPTLKKRIGVPVITTPYQQGWLDRLLSGELKQGASELYEKRGRWFVAVTLSFKVKQKMPETQQKIMGVDLGLRQLAVASIGTSSLFFRGKEMAFKRRRFASRRRILGKEKKLSVIRKSRRKESNWIRDTNHKVSRQIIKFALENGVHLIRMENLTGIRHTGKSRKEAGRNLHSWSHYQLQHFIEYKAKMEGIAVEYVNPEHTSQTCKCGHIDKRNRHLNQFRCIQCGYQSHADVNASINIAKAVSGISKKNRG
>LR134328.1|VEF49778.1|4076267_4077695_-|aspartate-ammonia-lyase
MEASVMETRVEKDFLGEKEVPVEAYYGIQTMRAVENFPITGNKLHEELIKALAIVKKAAALANTEVGLLPGEIGQAIVEASQEIIEGQLHDQFIVDPIQGGAGTSMNMNANEVIANRALELIGKKKGDYATISPNSHVNMAQSTNDSVPTAIHVAVLSVLDGLLAVMEDMKAAFDEKQKEFDHVVKMGRTHLQDAVPIRLGQEFGAYSRVIGRDIKRIRRSKEGLYEVNLGATAVGSGLNADPKYIQLAVEYLQDISGLPMSAAENLVDATQNTDAYTEVSAALKICMTNMSKIANDLRFMASGPRAGLAELNLPARQPGSSIMPGKVNPVMAELINQIAFQVIGNDQTVTLASEAGQFELNVMGPVLVYNLMDSITVMTNGFRVFTEYCVSDITANEERMKNYVESSVGTITAVNPHIGYEAAAAIAREAIETGRSVRELCLELGVLTAEELDQILDAHEMTNPGIAGAALLKK
>LR134328.1|VEF49777.1|4076001_4076208_-|Uncharacterised-protein
MEELIEKMGTSGMSGGSFLIKRKKIKHNKVIDMKRSLSIKEVEKALGINYMRPMKLTPADSVDILKRT
>LR134328.1|VEF49776.1|4075516_4075951_+|acetyltransferase
MRRLRIKELQSRTEMMEAFPVMKQLRTHLDEKVYLELISEAQEKEGYKMFALFHDSDIVAVIGFQPMITLYYGKFIWICDLVTDSHRRSEGYGEKLLSYVHQWAKENKYERVALSSGMQRTKAHRFYEEKMGYDKVSFVFKRDF
>LR134328.1|VEF49775.1|4074162_4075155_+|oxidoreductase
MKAIVHEGKSGMAGLSLREMEVAQPGQGEVRVKLKTAGMNHRDLFVLHRHQETDPPLIIGSDGAGIIDAVGEGVTNVNIGDEVIINPGLGWKEKSDAPPEGFDIVGLPGHGTFAEYIVIPAENAVPRPEHLIWEEAGVFGLAALTGYRALFTRGNISPDMTVLLPGVGSGVITFILKFAKTVGATVYVTSRSEEKRQRALELGADKAIDSDSDWDEQLEGEKVDLVIESVGAATFNKSLSQLRPGGTIVTFGASAGDEVNIDLRSFFYGQYNMLGSTMGSAEEFKEMIEFVEKHKIKPEIEAIFPLSKYEIAFNRLEEAEQFGKIGFLID
>LR134328.1|VEF49774.1|4073415_4074000_-|SAM-dependent-methyltransferase-YrrH
MADLGQFGKPMGIIGRFFGWMMDRYNKLEHVETIKSLDLQPDDHVLEIGYGTGQAMDLAAEYIHDGKIVGIDHSEAMFEVALRKNRKLVDREVVELHVGDAGKLDFPQESFNKVYSIHCIYFWEQPIVNLREIHRVLKNKGIAAITIRTGKGEVYQKFTDTNVKNWLESCGFKNVVINRLGERKHKASVILGEK
>LR134328.1|VEF49773.1|4072885_4073389_-|RDD-family
MLTVKRLAAYMIDFLILATVLLGIQLFISLVTDGWPFSRFRSGVQIEIWVLCTMSIPVWTYFITHEFRKQQTIGKKNLKLRVTRSDGGRLTLWQAWLRTLIKLLPWEVTHIIVLVPVPWWEPGAEPNNFIYIPNALILIYIICLFVTTGRKGPQDLIAATLVKVDET
>LR134328.1|VEF49772.1|4072590_4072836_-|Uncharacterised-protein
MEKEETSLQLLNELKELKAREETNTQLLNEIKEMRTKMEKLEQDIEDIKFFTPKPVVTPAMIGQIGGIILGALVIIGIFWL
>LR134328.1|VEF49782.1|4082265_4083063_-|carbon-nitrogen-hydrolase
MKAIKVSVAQLSPKLGDKQQNLQLISDAMIKAEKDQADLIVFPELFLTGYSVGESLGQLAETEDGPGMTEVRKLCLEHGIYAAISFPEQGEGKHYYISSALIDNNGDVLGVYRKSHLFDEEKKYFTPGSEFKVIETPLGKIGMMICFDVEFPEIARSLKLQGADMIVIVNANMHPYELQHHIFSRARAMENEIPIIICNRLGIEGDLDFCGDSMVIDATGEILLQMKQAEGLKTVDMPIDQQLDPKMSYTANRRAELYSKLVERF
>LR134328.1|VEF49783.1|4083474_4084053_-|copper/zinc-superoxide-dismutase
MLKKMIPYSIILLVILSACGGGKDTAEPEKTKEAAPVNAETPINIDLLNTEGDKVGEAELSENGKGVTIHVRAQGLEPGKRAIHIHETGKCTPPDFKSAGAHFNPGQKQHGFHNPKGYHAGDLPNLEVDTEGKVDEFLKTADVTLERGKPNSLLDKDGSALVIHAGQDDYVTDPAGNAGDRVVCGAIVKEGN
>LR134328.1|VEF49784.1|4084221_4085070_+|lipoate-protein-ligase
MNDTWGLLHSGHDDAAINMALDEALINWHSEGKIPPVLRFYGWSTATLSVGHFQKVDRTIDLDGVKRHGCQFVRRQTGGSAVLHDDELTYSVVVSESKPYISKSIREAYFELSKGIMEGFNQLGINADYSIPKERFKQDPTAVCFERPSDYEMLVDGKKISGNAQTRKKGVLLQHGSIPFSMDKKVLFDLFLFSDEDTRERKRSAFSQKATTINEASGRVVTYKEAEKAFQAGFEKALNLEFVPFELSEEQWKEVQELAESKYRSDDWNLNFRKRVLAHGKK
>LR134328.1|VEF49785.1|4085056_4086001_+|lipoyl-synthase
MAKNEEYIRKPDWLKIKINTNESYTGLKKLMRNKSLNTVCEEARCPNIHECWSERKTATFMILGDTCTRGCRFCAVKTGLPTELDWGEPERVAESVKIMGLQHVVVTAVARDDLKDGGAAVFAETVRRIREGNPGCTIEILPSDMKGDYESLTTLMSSAPDIFNHNIETVRRLTRRVRARAMYDRSLTLLQRVKEISPKTPTKSSIMVGLGETKEEIIETMDDLLAHDVDIMTIGQYLQPTKKHLKVERYYHPDEFEELKQIALSKGFSHCESGPLVRSSYHADEQVNAASAQRRIKYMKGYEDQEKKEVDFTF
>LR134328.1|VEF49786.1|4087022_4087448_-|GCN5-like-N-acetyltransferase
MEWTKDQFVLSDQQEKLDMDTVCRLLASTYWAADRPRETIVKSIENSITFGIYTEERQIGFARVATDKAVFSWLMDVVIDEPYRGNGLGKWLMDCILEHPDIRETNMSLKTEDAHLFYERYGLKRNETMRRASTFHAGDSL
>LR134328.1|VEF49787.1|4087518_4088061_-|ribosomal-protein-serine-N-acetyltransferase
MFVHVVDEEIYLKLVDQNDAVRLFELTDRSRSYLREWLPWLDDTNSVYDTRNYIKHSRDGFARHKNMNTAVVYKDEIVGIAGFNEFDWTNRSGSIGYWLDKHYTGHGIIVRSVKALTNFAFTELKMNRVEIRAAMGNLKSRAVPERLGFQYEGCIRESEWLYDHFVDHAVYGMLAKEWKY
>LR134328.1|VEF49788.1|4088243_4089581_-|amino-acid-permease
MEQTNQIERRLKLIHVVAIGLAYMAPMAVFDTFGIASDISSGHVPAAYIVVFIAILFTALSYGKLVRQFPNAGSVYTYTRNIINPYLGVIVGWVTFIAYIALPMINALLADIYLSAGFPEVPGWVWIVGLIVIISFLNIFGVKIAASVNLLLVGFQALVGVIFTYLTIRSIVKGPESFMPISDIFPSGDDVSGLFGAAALLALSFIGFDAITTLSEDTVKPKKTIPKAILLVAGIGGVFFFGVTYFMQSLFPDVSIFNDIEGASPEIAQIIGGNLFLSFFLAGALFSCFASGLASQVSASRLLYAMGRDGVLPKRFFGYLHPKYNSPVANILLIGVLALSAIFLSLEAASSLINVGAFTAFSFVNLCVIINFFRHQGPRTFSVVVGSLIFPSIGLAFVVYLWANLDIFSIIAGGIWALLGIVYLAFTTDFFKKEPPQIAFDELEA
>LR134328.1|VEF49789.1|4089718_4091200_-|aldehyde-dehydrogenase
MTSDENLPLHPKVIDFLQGPQKLFINGGWHESVEGQTFETHNPATGEVLAHVYEAREKDIDKAVEAAATAFEEGPWSRISAADRAKLMHKLADLMERDFEVLAQLDTLDNGKPINEMRIADVPDAIEQLRYFAGWTTKMTGQTIPVSNSFLNYTRHEPVGVVGQIIPWNFPLMMALWKIAPALATGCTIILKPAEQTPLSALYLGKLIEEAGFPEGVVNIVPGFGKSAGDALVKHPKVNKIAFTGSTAVGKSIMKTAADTMKRVTLELGGKSPNIILPDADLDKAIPGVFNGIMANQGEVCCAGSRAYIPEQMYDEVMERLADYAKRVKLGNGLAEDTQMGPLVSKRQQDIVTSYIQKGLDEGAKLLAGGESLDKGYFVQPTVFSAEDHMTIAREEIFGPVVACMPYKTIDEVVERANNSPYGLGAGLWTENLKNAHVVAGKLKAGSVWVNCYNLTNAAVPFGGYKQSGIGREMGSYALENYTEVKSVWVNLS
>LR134328.1|VEF49790.1|4091768_4093142_-|aminotransferase
MSQQTETLFNELSALDKKHILHPSTNPKLHSEIGPKLIFESGEGIYLKDMGGKTYIDGVSMLWNVNVGHGVKELADAAYEQMTKAAYTTTFYGYSNEASVRLAQKIAEVTPGDLNTIFYTSGGSESNDTAFKLSRSYWDLKGKKDKKLIISLRRGYHGVTIATQRATGIDAYREFSGSGDPNIVNAKPHLTECELGDKSHPEYEGSIRSIIEKEGADKVAAVILEPVQGAGGVHVPPEGYLKAVRALCDEFDIHMIADEIICGFGRTGKMFGVDHWDVVPDFMCVAKGMTSGYVQLGGVLMTDEIRDTFHTYDGMLPHGFTYSGHPTACAVGLKNLEILERDSLIENARVMGDELKKGLAYLEDKYAFVGNTRNRGLLAGFDLMEDPAAGKPFDGSIQAAVTVVEESYKRGLLIRPFAFTPGMNIVAIAPPLVVNKEEVERIIAIVDDSIAAFAKTL
>LR134328.1|VEF49791.1|4093195_4094434_-|N-carbamoyl-L-amino-acid-amidohydrolase
MEKTLLKVNRERLLETIKVSSSIGPSGNGGLNRLALSEADKNMRDIFVDWLKEEGLEVRIDDFGNIYGKRKGKLEDGPSVAIGSHLDTQPCGGKYDGILGVLSGLEVIRVLNENDIETEYPVEIVNFTNEEGARFAPPMLGSGGITGDFTKDYIYGIKDAEGISFEQALTDIDYLGDSKNRLTNIKNFIELHIEQGPILHDKEKTIGVVQGIQGIDWFTVKVTGKTNHAGPTPMENRKDALVAASKMILKVNEITDEIKGLKTTIGKMDVRPNVTNVIPGEVEFTIDIRHEDNELRSHAFERLKEQLSAIALMSEVELTITTDWNTETTLFAPAVKDAIQEAANKFGYSSLELFSGPGHDAKYMAGVADSGMIFVPSIDGISHNEEELTLDDDIEKGANVLLYVVQKLAGTK

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Crispr_ID: LR134328_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134328_6

4081821-4081975

TypeV-U3

Consensus_repeat	Method
CTGTTAATCAAACGTTTGTTTAA	CRISPRCasFinder

2 spacers

c2c10_CAS-V-U3

The CRISPR arrays of LR134328_6

>merge|LR134328|6|4081821-4081975|CRISPRCasFinder
CTGTTAATCAAACGTTTGTTTAAAATTGGGGGATTCCTGACGGGCTCCCTGAAATCCTTGTCAACACTGACTTTTCTTCTGTTAATCAAACGTTTGTTTAGATCAATGGAGGGGATTGAAAAAGATTGGTCATTTCAATTAAACAATTGATTAAG

>LR134328|6|6|4081821-4081975|CRISPRCasFinder
CTGTTAATCAAACGTTTGTTTAA	AATTGGGGGATTCCTGACGGGCTCCCTGAAATCCTTGTCAACACTGACTTTTCTT
CTGTTAATCAAACGTTTGTTTAG	ATCAATGGAGGGGATTGAAAAAGATTGGTC
ATTTCAATTAAACAATTGATTAAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134328.1\|VEF49789.1\|4089718_4091200_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143410
LR134328.1\|VEF49772.1\|4072590_4072836_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|367968
LR134328.1\|VEF49780.1\|4079357_4080149_-\|Sulfite-exporter-TauE/SafE	unknown	unknown	gnl\|CDD\|376667
LR134328.1\|VEF49784.1\|4084221_4085070_+\|lipoate-protein-ligase	unknown	unknown	gnl\|CDD\|319742
LR134328.1\|VEF49791.1\|4093195_4094434_-\|N-carbamoyl-L-amino-acid-amidohydrolase	unknown	unknown	gnl\|CDD\|236456
LR134328.1\|VEF49785.1\|4085056_4086001_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
LR134328.1\|VEF49776.1\|4075516_4075951_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134328.1\|VEF49773.1\|4072885_4073389_-\|RDD-family	unknown	unknown	gnl\|CDD\|377640
LR134328.1\|VEF49775.1\|4074162_4075155_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|176227
LR134328.1\|VEF49782.1\|4082265_4083063_-\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143587
LR134328.1\|VEF49778.1\|4076267_4077695_-\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|237031
LR134328.1\|VEF49790.1\|4091768_4093142_-\|aminotransferase	unknown	unknown	gnl\|CDD\|223239
LR134328.1\|VEF49783.1\|4083474_4084053_-\|copper/zinc-superoxide-dismutase	unknown	unknown	gnl\|CDD\|224943
LR134328.1\|VEF49779.1\|4078123_4079200_+\|transposase	c2c10_CAS-V-U3	-	gnl\|CDD\|223747
LR134328.1\|VEF49787.1\|4087518_4088061_-\|ribosomal-protein-serine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
LR134328.1\|VEF49788.1\|4088243_4089581_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
LR134328.1\|VEF49777.1\|4076001_4076208_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134328.1\|VEF49774.1\|4073415_4074000_-\|SAM-dependent-methyltransferase-YrrH	unknown	unknown	gnl\|CDD\|181382
LR134328.1\|VEF49786.1\|4087022_4087448_-\|GCN5-like-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
LR134328.1\|VEF49781.1\|4080170_4081514_-\|MATE-efflux-family-protein	unknown	unknown	gnl\|CDD\|240543

Protein	Function_ID	Function_description	E-value
LR134328.1\|VEF49789.1\|4089718_4091200_-\|aldehyde-dehydrogenase	gnl\|CDD\|143410	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. Also included in this subfamily is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial, homotetramers that oxidize acetaldehyde and glycolaldehyde, as well as, the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Also included is the AldA aldehyde dehydrogenase of Aspergillus nidulans (locus AN0554), the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) of Saccharomyces cerevisiae, and other similar sequences.	0
LR134328.1\|VEF49772.1\|4072590_4072836_-\|Uncharacterised-protein	gnl\|CDD\|367968	pfam04502, DUF572, Family of unknown function (DUF572). Family of eukaryotic proteins with undetermined function.	0.0031068
LR134328.1\|VEF49780.1\|4079357_4080149_-\|Sulfite-exporter-TauE/SafE	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	3.60437e-16
LR134328.1\|VEF49784.1\|4084221_4085070_+\|lipoate-protein-ligase	gnl\|CDD\|319742	cd16443, LplA, lipoate-protein ligase. Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.	4.60874e-60
LR134328.1\|VEF49785.1\|4085056_4086001_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
LR134328.1\|VEF49776.1\|4075516_4075951_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.28086e-09
LR134328.1\|VEF49773.1\|4072885_4073389_-\|RDD-family	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	2.58313e-11
LR134328.1\|VEF49775.1\|4074162_4075155_+\|oxidoreductase	gnl\|CDD\|176227	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	9.12863e-107
LR134328.1\|VEF49782.1\|4082265_4083063_-\|carbon-nitrogen-hydrolase	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	7.29726e-87
LR134328.1\|VEF49778.1\|4076267_4077695_-\|aspartate-ammonia-lyase	gnl\|CDD\|237031	PRK12273, aspA, aspartate ammonia-lyase; Provisional.	0
LR134328.1\|VEF49790.1\|4091768_4093142_-\|aminotransferase	gnl\|CDD\|223239	COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism].	8.044e-177
LR134328.1\|VEF49783.1\|4083474_4084053_-\|copper/zinc-superoxide-dismutase	gnl\|CDD\|224943	COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism].	3.35125e-45
LR134328.1\|VEF49779.1\|4078123_4079200_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.22551e-26
LR134328.1\|VEF49787.1\|4087518_4088061_-\|ribosomal-protein-serine-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	9.76333e-29
LR134328.1\|VEF49788.1\|4088243_4089581_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.21008e-35
LR134328.1\|VEF49791.1\|4093195_4094434_-\|N-carbamoyl-L-amino-acid-amidohydrolase	gnl\|CDD\|236456	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed.	0
LR134328.1\|VEF49774.1\|4073415_4074000_-\|SAM-dependent-methyltransferase-YrrH	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	7.33659e-20
LR134328.1\|VEF49786.1\|4087022_4087448_-\|GCN5-like-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.04768e-12
LR134328.1\|VEF49781.1\|4080170_4081514_-\|MATE-efflux-family-protein	gnl\|CDD\|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.44579e-123

>LR134328.1|VEF49781.1|4080170_4081514_-|MATE-efflux-family-protein
MKQQDFTTGPIGKQLLAFSLPILVTNLLQTSYQFIDSLWVGNLLGANALGAVAVSSTVIFTVLSFIIGVNNATLTVLSQLKGKDDEARLKSFVNAFVIILSVMAIALGLAGFIFSKSILQFLGTPSSMIADAVSYLQINFLGILFLFGYNFISTVFRALGNSKTPVRFVLTAVILNAVLDPLFIYVLDWGIEGAAYATVVAQGTAFVYGLFVSIRFKQIPFSMPKLPKREEASIILKQGIPSGLQMTVISAGLAAIMSVVTSFGPDAVAGFGAAQRLDSIIMLPAHALGTAVNSMAGQNIAIKQWDRVRQITMYALLLNLAAMLLAALIIFVFARWGILMFISDEGAVAFGTEYVKIIAFFYPFLGLNFVWNGVVRASGAMFQVLVLNIISFWVLRYPLTFIFAKLIGERGIGLGIAASFVISSILAFGYYRLGKWRERELFEEAAQ
>LR134328.1|VEF49780.1|4079357_4080149_-|Sulfite-exporter-TauE/SafE
MGAIYFLVGLLASIIGAVAGIGGGIIIKPALDLLSHYDPATIGILSSSTVFMMAAVSLLGTVKSGLRVEKRTSLTLAAGSVIGGIIGQYTFNYLIKAVHQDAAITFSQSGMLALLMLVIFFMVKNKEKMNTYRLHQIFLIILIGFGLGMIGAFLGIGGGPLNIAILTLAFSMGTKEAAANSIFIIFFSQLSSLMLVWLTEGFAGYDLSALVYMLAGGAIGGLIGSFLSNKMPSKWVDLLFQSIIMMIFFLRLPRLKPQALHLR
>LR134328.1|VEF49779.1|4078123_4079200_+|transposase
MQTITLKLELKKPTKEKASMYQKMTEVNTSFSNWLLNFEGLNTATSKVFRLFSDRRLPSAVVNQTIREVKSKKKHQKTKKFRRFWCGFNNQNLHIEKENHLYKVSFPTLKKRIGVPVITTPYQQGWLDRLLSGELKQGASELYEKRGRWFVAVTLSFKVKQKMPETQQKIMGVDLGLRQLAVASIGTSSLFFRGKEMAFKRRRFASRRRILGKEKKLSVIRKSRRKESNWIRDTNHKVSRQIIKFALENGVHLIRMENLTGIRHTGKSRKEAGRNLHSWSHYQLQHFIEYKAKMEGIAVEYVNPEHTSQTCKCGHIDKRNRHLNQFRCIQCGYQSHADVNASINIAKAVSGISKKNRG
>LR134328.1|VEF49778.1|4076267_4077695_-|aspartate-ammonia-lyase
MEASVMETRVEKDFLGEKEVPVEAYYGIQTMRAVENFPITGNKLHEELIKALAIVKKAAALANTEVGLLPGEIGQAIVEASQEIIEGQLHDQFIVDPIQGGAGTSMNMNANEVIANRALELIGKKKGDYATISPNSHVNMAQSTNDSVPTAIHVAVLSVLDGLLAVMEDMKAAFDEKQKEFDHVVKMGRTHLQDAVPIRLGQEFGAYSRVIGRDIKRIRRSKEGLYEVNLGATAVGSGLNADPKYIQLAVEYLQDISGLPMSAAENLVDATQNTDAYTEVSAALKICMTNMSKIANDLRFMASGPRAGLAELNLPARQPGSSIMPGKVNPVMAELINQIAFQVIGNDQTVTLASEAGQFELNVMGPVLVYNLMDSITVMTNGFRVFTEYCVSDITANEERMKNYVESSVGTITAVNPHIGYEAAAAIAREAIETGRSVRELCLELGVLTAEELDQILDAHEMTNPGIAGAALLKK
>LR134328.1|VEF49777.1|4076001_4076208_-|Uncharacterised-protein
MEELIEKMGTSGMSGGSFLIKRKKIKHNKVIDMKRSLSIKEVEKALGINYMRPMKLTPADSVDILKRT
>LR134328.1|VEF49776.1|4075516_4075951_+|acetyltransferase
MRRLRIKELQSRTEMMEAFPVMKQLRTHLDEKVYLELISEAQEKEGYKMFALFHDSDIVAVIGFQPMITLYYGKFIWICDLVTDSHRRSEGYGEKLLSYVHQWAKENKYERVALSSGMQRTKAHRFYEEKMGYDKVSFVFKRDF
>LR134328.1|VEF49775.1|4074162_4075155_+|oxidoreductase
MKAIVHEGKSGMAGLSLREMEVAQPGQGEVRVKLKTAGMNHRDLFVLHRHQETDPPLIIGSDGAGIIDAVGEGVTNVNIGDEVIINPGLGWKEKSDAPPEGFDIVGLPGHGTFAEYIVIPAENAVPRPEHLIWEEAGVFGLAALTGYRALFTRGNISPDMTVLLPGVGSGVITFILKFAKTVGATVYVTSRSEEKRQRALELGADKAIDSDSDWDEQLEGEKVDLVIESVGAATFNKSLSQLRPGGTIVTFGASAGDEVNIDLRSFFYGQYNMLGSTMGSAEEFKEMIEFVEKHKIKPEIEAIFPLSKYEIAFNRLEEAEQFGKIGFLID
>LR134328.1|VEF49774.1|4073415_4074000_-|SAM-dependent-methyltransferase-YrrH
MADLGQFGKPMGIIGRFFGWMMDRYNKLEHVETIKSLDLQPDDHVLEIGYGTGQAMDLAAEYIHDGKIVGIDHSEAMFEVALRKNRKLVDREVVELHVGDAGKLDFPQESFNKVYSIHCIYFWEQPIVNLREIHRVLKNKGIAAITIRTGKGEVYQKFTDTNVKNWLESCGFKNVVINRLGERKHKASVILGEK
>LR134328.1|VEF49773.1|4072885_4073389_-|RDD-family
MLTVKRLAAYMIDFLILATVLLGIQLFISLVTDGWPFSRFRSGVQIEIWVLCTMSIPVWTYFITHEFRKQQTIGKKNLKLRVTRSDGGRLTLWQAWLRTLIKLLPWEVTHIIVLVPVPWWEPGAEPNNFIYIPNALILIYIICLFVTTGRKGPQDLIAATLVKVDET
>LR134328.1|VEF49772.1|4072590_4072836_-|Uncharacterised-protein
MEKEETSLQLLNELKELKAREETNTQLLNEIKEMRTKMEKLEQDIEDIKFFTPKPVVTPAMIGQIGGIILGALVIIGIFWL
>LR134328.1|VEF49782.1|4082265_4083063_-|carbon-nitrogen-hydrolase
MKAIKVSVAQLSPKLGDKQQNLQLISDAMIKAEKDQADLIVFPELFLTGYSVGESLGQLAETEDGPGMTEVRKLCLEHGIYAAISFPEQGEGKHYYISSALIDNNGDVLGVYRKSHLFDEEKKYFTPGSEFKVIETPLGKIGMMICFDVEFPEIARSLKLQGADMIVIVNANMHPYELQHHIFSRARAMENEIPIIICNRLGIEGDLDFCGDSMVIDATGEILLQMKQAEGLKTVDMPIDQQLDPKMSYTANRRAELYSKLVERF
>LR134328.1|VEF49783.1|4083474_4084053_-|copper/zinc-superoxide-dismutase
MLKKMIPYSIILLVILSACGGGKDTAEPEKTKEAAPVNAETPINIDLLNTEGDKVGEAELSENGKGVTIHVRAQGLEPGKRAIHIHETGKCTPPDFKSAGAHFNPGQKQHGFHNPKGYHAGDLPNLEVDTEGKVDEFLKTADVTLERGKPNSLLDKDGSALVIHAGQDDYVTDPAGNAGDRVVCGAIVKEGN
>LR134328.1|VEF49784.1|4084221_4085070_+|lipoate-protein-ligase
MNDTWGLLHSGHDDAAINMALDEALINWHSEGKIPPVLRFYGWSTATLSVGHFQKVDRTIDLDGVKRHGCQFVRRQTGGSAVLHDDELTYSVVVSESKPYISKSIREAYFELSKGIMEGFNQLGINADYSIPKERFKQDPTAVCFERPSDYEMLVDGKKISGNAQTRKKGVLLQHGSIPFSMDKKVLFDLFLFSDEDTRERKRSAFSQKATTINEASGRVVTYKEAEKAFQAGFEKALNLEFVPFELSEEQWKEVQELAESKYRSDDWNLNFRKRVLAHGKK
>LR134328.1|VEF49785.1|4085056_4086001_+|lipoyl-synthase
MAKNEEYIRKPDWLKIKINTNESYTGLKKLMRNKSLNTVCEEARCPNIHECWSERKTATFMILGDTCTRGCRFCAVKTGLPTELDWGEPERVAESVKIMGLQHVVVTAVARDDLKDGGAAVFAETVRRIREGNPGCTIEILPSDMKGDYESLTTLMSSAPDIFNHNIETVRRLTRRVRARAMYDRSLTLLQRVKEISPKTPTKSSIMVGLGETKEEIIETMDDLLAHDVDIMTIGQYLQPTKKHLKVERYYHPDEFEELKQIALSKGFSHCESGPLVRSSYHADEQVNAASAQRRIKYMKGYEDQEKKEVDFTF
>LR134328.1|VEF49786.1|4087022_4087448_-|GCN5-like-N-acetyltransferase
MEWTKDQFVLSDQQEKLDMDTVCRLLASTYWAADRPRETIVKSIENSITFGIYTEERQIGFARVATDKAVFSWLMDVVIDEPYRGNGLGKWLMDCILEHPDIRETNMSLKTEDAHLFYERYGLKRNETMRRASTFHAGDSL
>LR134328.1|VEF49787.1|4087518_4088061_-|ribosomal-protein-serine-N-acetyltransferase
MFVHVVDEEIYLKLVDQNDAVRLFELTDRSRSYLREWLPWLDDTNSVYDTRNYIKHSRDGFARHKNMNTAVVYKDEIVGIAGFNEFDWTNRSGSIGYWLDKHYTGHGIIVRSVKALTNFAFTELKMNRVEIRAAMGNLKSRAVPERLGFQYEGCIRESEWLYDHFVDHAVYGMLAKEWKY
>LR134328.1|VEF49788.1|4088243_4089581_-|amino-acid-permease
MEQTNQIERRLKLIHVVAIGLAYMAPMAVFDTFGIASDISSGHVPAAYIVVFIAILFTALSYGKLVRQFPNAGSVYTYTRNIINPYLGVIVGWVTFIAYIALPMINALLADIYLSAGFPEVPGWVWIVGLIVIISFLNIFGVKIAASVNLLLVGFQALVGVIFTYLTIRSIVKGPESFMPISDIFPSGDDVSGLFGAAALLALSFIGFDAITTLSEDTVKPKKTIPKAILLVAGIGGVFFFGVTYFMQSLFPDVSIFNDIEGASPEIAQIIGGNLFLSFFLAGALFSCFASGLASQVSASRLLYAMGRDGVLPKRFFGYLHPKYNSPVANILLIGVLALSAIFLSLEAASSLINVGAFTAFSFVNLCVIINFFRHQGPRTFSVVVGSLIFPSIGLAFVVYLWANLDIFSIIAGGIWALLGIVYLAFTTDFFKKEPPQIAFDELEA
>LR134328.1|VEF49789.1|4089718_4091200_-|aldehyde-dehydrogenase
MTSDENLPLHPKVIDFLQGPQKLFINGGWHESVEGQTFETHNPATGEVLAHVYEAREKDIDKAVEAAATAFEEGPWSRISAADRAKLMHKLADLMERDFEVLAQLDTLDNGKPINEMRIADVPDAIEQLRYFAGWTTKMTGQTIPVSNSFLNYTRHEPVGVVGQIIPWNFPLMMALWKIAPALATGCTIILKPAEQTPLSALYLGKLIEEAGFPEGVVNIVPGFGKSAGDALVKHPKVNKIAFTGSTAVGKSIMKTAADTMKRVTLELGGKSPNIILPDADLDKAIPGVFNGIMANQGEVCCAGSRAYIPEQMYDEVMERLADYAKRVKLGNGLAEDTQMGPLVSKRQQDIVTSYIQKGLDEGAKLLAGGESLDKGYFVQPTVFSAEDHMTIAREEIFGPVVACMPYKTIDEVVERANNSPYGLGAGLWTENLKNAHVVAGKLKAGSVWVNCYNLTNAAVPFGGYKQSGIGREMGSYALENYTEVKSVWVNLS
>LR134328.1|VEF49790.1|4091768_4093142_-|aminotransferase
MSQQTETLFNELSALDKKHILHPSTNPKLHSEIGPKLIFESGEGIYLKDMGGKTYIDGVSMLWNVNVGHGVKELADAAYEQMTKAAYTTTFYGYSNEASVRLAQKIAEVTPGDLNTIFYTSGGSESNDTAFKLSRSYWDLKGKKDKKLIISLRRGYHGVTIATQRATGIDAYREFSGSGDPNIVNAKPHLTECELGDKSHPEYEGSIRSIIEKEGADKVAAVILEPVQGAGGVHVPPEGYLKAVRALCDEFDIHMIADEIICGFGRTGKMFGVDHWDVVPDFMCVAKGMTSGYVQLGGVLMTDEIRDTFHTYDGMLPHGFTYSGHPTACAVGLKNLEILERDSLIENARVMGDELKKGLAYLEDKYAFVGNTRNRGLLAGFDLMEDPAAGKPFDGSIQAAVTVVEESYKRGLLIRPFAFTPGMNIVAIAPPLVVNKEEVERIIAIVDDSIAAFAKTL
>LR134328.1|VEF49791.1|4093195_4094434_-|N-carbamoyl-L-amino-acid-amidohydrolase
MEKTLLKVNRERLLETIKVSSSIGPSGNGGLNRLALSEADKNMRDIFVDWLKEEGLEVRIDDFGNIYGKRKGKLEDGPSVAIGSHLDTQPCGGKYDGILGVLSGLEVIRVLNENDIETEYPVEIVNFTNEEGARFAPPMLGSGGITGDFTKDYIYGIKDAEGISFEQALTDIDYLGDSKNRLTNIKNFIELHIEQGPILHDKEKTIGVVQGIQGIDWFTVKVTGKTNHAGPTPMENRKDALVAASKMILKVNEITDEIKGLKTTIGKMDVRPNVTNVIPGEVEFTIDIRHEDNELRSHAFERLKEQLSAIALMSEVELTITTDWNTETTLFAPAVKDAIQEAANKFGYSSLELFSGPGHDAKYMAGVADSGMIFVPSIDGISHNEEELTLDDDIEKGANVLLYVVQKLAGTK

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Crispr_ID: LR134328_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134328_7

4082055-4082211

TypeV-U3

Consensus_repeat	Method
CTGTTAATCAAACGTTTGTTTAA	CRISPRCasFinder

2 spacers

c2c10_CAS-V-U3

The CRISPR arrays of LR134328_7

>merge|LR134328|7|4082055-4082211|CRISPRCasFinder
CCGCTAATCAAACGTTTAATTAAAAAATACCGCATTCTAAGATAATCCCCTTAAACCCATGTCAATTCTAGCTTTTTTTCTACTAACCAAACGTTTGATTAGATCAATAGCGTGGATTAAATACCAGGTTGGTCCATTCACTCAAACGTTTGATTAA

>LR134328|7|7|4082055-4082211|CRISPRCasFinder
CCGCTAATCAAACGTTTAATTAA	AAAATACCGCATTCTAAGATAATCCCCTTAAACCCATGTCAATTCTAGCTTTTTTT
CTACTAACCAAACGTTTGATTAG	ATCAATAGCGTGGATTAAATACCAGGTTGGTC
CATTCACTCAAACGTTTGATTAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134328.1\|VEF49789.1\|4089718_4091200_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143410
LR134328.1\|VEF49772.1\|4072590_4072836_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|367968
LR134328.1\|VEF49780.1\|4079357_4080149_-\|Sulfite-exporter-TauE/SafE	unknown	unknown	gnl\|CDD\|376667
LR134328.1\|VEF49784.1\|4084221_4085070_+\|lipoate-protein-ligase	unknown	unknown	gnl\|CDD\|319742
LR134328.1\|VEF49791.1\|4093195_4094434_-\|N-carbamoyl-L-amino-acid-amidohydrolase	unknown	unknown	gnl\|CDD\|236456
LR134328.1\|VEF49785.1\|4085056_4086001_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
LR134328.1\|VEF49776.1\|4075516_4075951_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134328.1\|VEF49773.1\|4072885_4073389_-\|RDD-family	unknown	unknown	gnl\|CDD\|377640
LR134328.1\|VEF49775.1\|4074162_4075155_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|176227
LR134328.1\|VEF49782.1\|4082265_4083063_-\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143587
LR134328.1\|VEF49778.1\|4076267_4077695_-\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|237031
LR134328.1\|VEF49790.1\|4091768_4093142_-\|aminotransferase	unknown	unknown	gnl\|CDD\|223239
LR134328.1\|VEF49783.1\|4083474_4084053_-\|copper/zinc-superoxide-dismutase	unknown	unknown	gnl\|CDD\|224943
LR134328.1\|VEF49779.1\|4078123_4079200_+\|transposase	c2c10_CAS-V-U3	-	gnl\|CDD\|223747
LR134328.1\|VEF49787.1\|4087518_4088061_-\|ribosomal-protein-serine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
LR134328.1\|VEF49788.1\|4088243_4089581_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
LR134328.1\|VEF49777.1\|4076001_4076208_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134328.1\|VEF49774.1\|4073415_4074000_-\|SAM-dependent-methyltransferase-YrrH	unknown	unknown	gnl\|CDD\|181382
LR134328.1\|VEF49786.1\|4087022_4087448_-\|GCN5-like-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
LR134328.1\|VEF49781.1\|4080170_4081514_-\|MATE-efflux-family-protein	unknown	unknown	gnl\|CDD\|240543

Protein	Function_ID	Function_description	E-value
LR134328.1\|VEF49789.1\|4089718_4091200_-\|aldehyde-dehydrogenase	gnl\|CDD\|143410	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. Also included in this subfamily is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial, homotetramers that oxidize acetaldehyde and glycolaldehyde, as well as, the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Also included is the AldA aldehyde dehydrogenase of Aspergillus nidulans (locus AN0554), the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) of Saccharomyces cerevisiae, and other similar sequences.	0
LR134328.1\|VEF49772.1\|4072590_4072836_-\|Uncharacterised-protein	gnl\|CDD\|367968	pfam04502, DUF572, Family of unknown function (DUF572). Family of eukaryotic proteins with undetermined function.	0.0031068
LR134328.1\|VEF49780.1\|4079357_4080149_-\|Sulfite-exporter-TauE/SafE	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	3.60437e-16
LR134328.1\|VEF49784.1\|4084221_4085070_+\|lipoate-protein-ligase	gnl\|CDD\|319742	cd16443, LplA, lipoate-protein ligase. Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.	4.60874e-60
LR134328.1\|VEF49785.1\|4085056_4086001_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
LR134328.1\|VEF49776.1\|4075516_4075951_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.28086e-09
LR134328.1\|VEF49773.1\|4072885_4073389_-\|RDD-family	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	2.58313e-11
LR134328.1\|VEF49775.1\|4074162_4075155_+\|oxidoreductase	gnl\|CDD\|176227	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	9.12863e-107
LR134328.1\|VEF49782.1\|4082265_4083063_-\|carbon-nitrogen-hydrolase	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	7.29726e-87
LR134328.1\|VEF49778.1\|4076267_4077695_-\|aspartate-ammonia-lyase	gnl\|CDD\|237031	PRK12273, aspA, aspartate ammonia-lyase; Provisional.	0
LR134328.1\|VEF49790.1\|4091768_4093142_-\|aminotransferase	gnl\|CDD\|223239	COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism].	8.044e-177
LR134328.1\|VEF49783.1\|4083474_4084053_-\|copper/zinc-superoxide-dismutase	gnl\|CDD\|224943	COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism].	3.35125e-45
LR134328.1\|VEF49779.1\|4078123_4079200_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.22551e-26
LR134328.1\|VEF49787.1\|4087518_4088061_-\|ribosomal-protein-serine-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	9.76333e-29
LR134328.1\|VEF49788.1\|4088243_4089581_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.21008e-35
LR134328.1\|VEF49791.1\|4093195_4094434_-\|N-carbamoyl-L-amino-acid-amidohydrolase	gnl\|CDD\|236456	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed.	0
LR134328.1\|VEF49774.1\|4073415_4074000_-\|SAM-dependent-methyltransferase-YrrH	gnl\|CDD\|181382	PRK08317, PRK08317, hypothetical protein; Provisional.	7.33659e-20
LR134328.1\|VEF49786.1\|4087022_4087448_-\|GCN5-like-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.04768e-12
LR134328.1\|VEF49781.1\|4080170_4081514_-\|MATE-efflux-family-protein	gnl\|CDD\|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.44579e-123

>LR134328.1|VEF49781.1|4080170_4081514_-|MATE-efflux-family-protein
MKQQDFTTGPIGKQLLAFSLPILVTNLLQTSYQFIDSLWVGNLLGANALGAVAVSSTVIFTVLSFIIGVNNATLTVLSQLKGKDDEARLKSFVNAFVIILSVMAIALGLAGFIFSKSILQFLGTPSSMIADAVSYLQINFLGILFLFGYNFISTVFRALGNSKTPVRFVLTAVILNAVLDPLFIYVLDWGIEGAAYATVVAQGTAFVYGLFVSIRFKQIPFSMPKLPKREEASIILKQGIPSGLQMTVISAGLAAIMSVVTSFGPDAVAGFGAAQRLDSIIMLPAHALGTAVNSMAGQNIAIKQWDRVRQITMYALLLNLAAMLLAALIIFVFARWGILMFISDEGAVAFGTEYVKIIAFFYPFLGLNFVWNGVVRASGAMFQVLVLNIISFWVLRYPLTFIFAKLIGERGIGLGIAASFVISSILAFGYYRLGKWRERELFEEAAQ
>LR134328.1|VEF49780.1|4079357_4080149_-|Sulfite-exporter-TauE/SafE
MGAIYFLVGLLASIIGAVAGIGGGIIIKPALDLLSHYDPATIGILSSSTVFMMAAVSLLGTVKSGLRVEKRTSLTLAAGSVIGGIIGQYTFNYLIKAVHQDAAITFSQSGMLALLMLVIFFMVKNKEKMNTYRLHQIFLIILIGFGLGMIGAFLGIGGGPLNIAILTLAFSMGTKEAAANSIFIIFFSQLSSLMLVWLTEGFAGYDLSALVYMLAGGAIGGLIGSFLSNKMPSKWVDLLFQSIIMMIFFLRLPRLKPQALHLR
>LR134328.1|VEF49779.1|4078123_4079200_+|transposase
MQTITLKLELKKPTKEKASMYQKMTEVNTSFSNWLLNFEGLNTATSKVFRLFSDRRLPSAVVNQTIREVKSKKKHQKTKKFRRFWCGFNNQNLHIEKENHLYKVSFPTLKKRIGVPVITTPYQQGWLDRLLSGELKQGASELYEKRGRWFVAVTLSFKVKQKMPETQQKIMGVDLGLRQLAVASIGTSSLFFRGKEMAFKRRRFASRRRILGKEKKLSVIRKSRRKESNWIRDTNHKVSRQIIKFALENGVHLIRMENLTGIRHTGKSRKEAGRNLHSWSHYQLQHFIEYKAKMEGIAVEYVNPEHTSQTCKCGHIDKRNRHLNQFRCIQCGYQSHADVNASINIAKAVSGISKKNRG
>LR134328.1|VEF49778.1|4076267_4077695_-|aspartate-ammonia-lyase
MEASVMETRVEKDFLGEKEVPVEAYYGIQTMRAVENFPITGNKLHEELIKALAIVKKAAALANTEVGLLPGEIGQAIVEASQEIIEGQLHDQFIVDPIQGGAGTSMNMNANEVIANRALELIGKKKGDYATISPNSHVNMAQSTNDSVPTAIHVAVLSVLDGLLAVMEDMKAAFDEKQKEFDHVVKMGRTHLQDAVPIRLGQEFGAYSRVIGRDIKRIRRSKEGLYEVNLGATAVGSGLNADPKYIQLAVEYLQDISGLPMSAAENLVDATQNTDAYTEVSAALKICMTNMSKIANDLRFMASGPRAGLAELNLPARQPGSSIMPGKVNPVMAELINQIAFQVIGNDQTVTLASEAGQFELNVMGPVLVYNLMDSITVMTNGFRVFTEYCVSDITANEERMKNYVESSVGTITAVNPHIGYEAAAAIAREAIETGRSVRELCLELGVLTAEELDQILDAHEMTNPGIAGAALLKK
>LR134328.1|VEF49777.1|4076001_4076208_-|Uncharacterised-protein
MEELIEKMGTSGMSGGSFLIKRKKIKHNKVIDMKRSLSIKEVEKALGINYMRPMKLTPADSVDILKRT
>LR134328.1|VEF49776.1|4075516_4075951_+|acetyltransferase
MRRLRIKELQSRTEMMEAFPVMKQLRTHLDEKVYLELISEAQEKEGYKMFALFHDSDIVAVIGFQPMITLYYGKFIWICDLVTDSHRRSEGYGEKLLSYVHQWAKENKYERVALSSGMQRTKAHRFYEEKMGYDKVSFVFKRDF
>LR134328.1|VEF49775.1|4074162_4075155_+|oxidoreductase
MKAIVHEGKSGMAGLSLREMEVAQPGQGEVRVKLKTAGMNHRDLFVLHRHQETDPPLIIGSDGAGIIDAVGEGVTNVNIGDEVIINPGLGWKEKSDAPPEGFDIVGLPGHGTFAEYIVIPAENAVPRPEHLIWEEAGVFGLAALTGYRALFTRGNISPDMTVLLPGVGSGVITFILKFAKTVGATVYVTSRSEEKRQRALELGADKAIDSDSDWDEQLEGEKVDLVIESVGAATFNKSLSQLRPGGTIVTFGASAGDEVNIDLRSFFYGQYNMLGSTMGSAEEFKEMIEFVEKHKIKPEIEAIFPLSKYEIAFNRLEEAEQFGKIGFLID
>LR134328.1|VEF49774.1|4073415_4074000_-|SAM-dependent-methyltransferase-YrrH
MADLGQFGKPMGIIGRFFGWMMDRYNKLEHVETIKSLDLQPDDHVLEIGYGTGQAMDLAAEYIHDGKIVGIDHSEAMFEVALRKNRKLVDREVVELHVGDAGKLDFPQESFNKVYSIHCIYFWEQPIVNLREIHRVLKNKGIAAITIRTGKGEVYQKFTDTNVKNWLESCGFKNVVINRLGERKHKASVILGEK
>LR134328.1|VEF49773.1|4072885_4073389_-|RDD-family
MLTVKRLAAYMIDFLILATVLLGIQLFISLVTDGWPFSRFRSGVQIEIWVLCTMSIPVWTYFITHEFRKQQTIGKKNLKLRVTRSDGGRLTLWQAWLRTLIKLLPWEVTHIIVLVPVPWWEPGAEPNNFIYIPNALILIYIICLFVTTGRKGPQDLIAATLVKVDET
>LR134328.1|VEF49772.1|4072590_4072836_-|Uncharacterised-protein
MEKEETSLQLLNELKELKAREETNTQLLNEIKEMRTKMEKLEQDIEDIKFFTPKPVVTPAMIGQIGGIILGALVIIGIFWL
>LR134328.1|VEF49782.1|4082265_4083063_-|carbon-nitrogen-hydrolase
MKAIKVSVAQLSPKLGDKQQNLQLISDAMIKAEKDQADLIVFPELFLTGYSVGESLGQLAETEDGPGMTEVRKLCLEHGIYAAISFPEQGEGKHYYISSALIDNNGDVLGVYRKSHLFDEEKKYFTPGSEFKVIETPLGKIGMMICFDVEFPEIARSLKLQGADMIVIVNANMHPYELQHHIFSRARAMENEIPIIICNRLGIEGDLDFCGDSMVIDATGEILLQMKQAEGLKTVDMPIDQQLDPKMSYTANRRAELYSKLVERF
>LR134328.1|VEF49783.1|4083474_4084053_-|copper/zinc-superoxide-dismutase
MLKKMIPYSIILLVILSACGGGKDTAEPEKTKEAAPVNAETPINIDLLNTEGDKVGEAELSENGKGVTIHVRAQGLEPGKRAIHIHETGKCTPPDFKSAGAHFNPGQKQHGFHNPKGYHAGDLPNLEVDTEGKVDEFLKTADVTLERGKPNSLLDKDGSALVIHAGQDDYVTDPAGNAGDRVVCGAIVKEGN
>LR134328.1|VEF49784.1|4084221_4085070_+|lipoate-protein-ligase
MNDTWGLLHSGHDDAAINMALDEALINWHSEGKIPPVLRFYGWSTATLSVGHFQKVDRTIDLDGVKRHGCQFVRRQTGGSAVLHDDELTYSVVVSESKPYISKSIREAYFELSKGIMEGFNQLGINADYSIPKERFKQDPTAVCFERPSDYEMLVDGKKISGNAQTRKKGVLLQHGSIPFSMDKKVLFDLFLFSDEDTRERKRSAFSQKATTINEASGRVVTYKEAEKAFQAGFEKALNLEFVPFELSEEQWKEVQELAESKYRSDDWNLNFRKRVLAHGKK
>LR134328.1|VEF49785.1|4085056_4086001_+|lipoyl-synthase
MAKNEEYIRKPDWLKIKINTNESYTGLKKLMRNKSLNTVCEEARCPNIHECWSERKTATFMILGDTCTRGCRFCAVKTGLPTELDWGEPERVAESVKIMGLQHVVVTAVARDDLKDGGAAVFAETVRRIREGNPGCTIEILPSDMKGDYESLTTLMSSAPDIFNHNIETVRRLTRRVRARAMYDRSLTLLQRVKEISPKTPTKSSIMVGLGETKEEIIETMDDLLAHDVDIMTIGQYLQPTKKHLKVERYYHPDEFEELKQIALSKGFSHCESGPLVRSSYHADEQVNAASAQRRIKYMKGYEDQEKKEVDFTF
>LR134328.1|VEF49786.1|4087022_4087448_-|GCN5-like-N-acetyltransferase
MEWTKDQFVLSDQQEKLDMDTVCRLLASTYWAADRPRETIVKSIENSITFGIYTEERQIGFARVATDKAVFSWLMDVVIDEPYRGNGLGKWLMDCILEHPDIRETNMSLKTEDAHLFYERYGLKRNETMRRASTFHAGDSL
>LR134328.1|VEF49787.1|4087518_4088061_-|ribosomal-protein-serine-N-acetyltransferase
MFVHVVDEEIYLKLVDQNDAVRLFELTDRSRSYLREWLPWLDDTNSVYDTRNYIKHSRDGFARHKNMNTAVVYKDEIVGIAGFNEFDWTNRSGSIGYWLDKHYTGHGIIVRSVKALTNFAFTELKMNRVEIRAAMGNLKSRAVPERLGFQYEGCIRESEWLYDHFVDHAVYGMLAKEWKY
>LR134328.1|VEF49788.1|4088243_4089581_-|amino-acid-permease
MEQTNQIERRLKLIHVVAIGLAYMAPMAVFDTFGIASDISSGHVPAAYIVVFIAILFTALSYGKLVRQFPNAGSVYTYTRNIINPYLGVIVGWVTFIAYIALPMINALLADIYLSAGFPEVPGWVWIVGLIVIISFLNIFGVKIAASVNLLLVGFQALVGVIFTYLTIRSIVKGPESFMPISDIFPSGDDVSGLFGAAALLALSFIGFDAITTLSEDTVKPKKTIPKAILLVAGIGGVFFFGVTYFMQSLFPDVSIFNDIEGASPEIAQIIGGNLFLSFFLAGALFSCFASGLASQVSASRLLYAMGRDGVLPKRFFGYLHPKYNSPVANILLIGVLALSAIFLSLEAASSLINVGAFTAFSFVNLCVIINFFRHQGPRTFSVVVGSLIFPSIGLAFVVYLWANLDIFSIIAGGIWALLGIVYLAFTTDFFKKEPPQIAFDELEA
>LR134328.1|VEF49789.1|4089718_4091200_-|aldehyde-dehydrogenase
MTSDENLPLHPKVIDFLQGPQKLFINGGWHESVEGQTFETHNPATGEVLAHVYEAREKDIDKAVEAAATAFEEGPWSRISAADRAKLMHKLADLMERDFEVLAQLDTLDNGKPINEMRIADVPDAIEQLRYFAGWTTKMTGQTIPVSNSFLNYTRHEPVGVVGQIIPWNFPLMMALWKIAPALATGCTIILKPAEQTPLSALYLGKLIEEAGFPEGVVNIVPGFGKSAGDALVKHPKVNKIAFTGSTAVGKSIMKTAADTMKRVTLELGGKSPNIILPDADLDKAIPGVFNGIMANQGEVCCAGSRAYIPEQMYDEVMERLADYAKRVKLGNGLAEDTQMGPLVSKRQQDIVTSYIQKGLDEGAKLLAGGESLDKGYFVQPTVFSAEDHMTIAREEIFGPVVACMPYKTIDEVVERANNSPYGLGAGLWTENLKNAHVVAGKLKAGSVWVNCYNLTNAAVPFGGYKQSGIGREMGSYALENYTEVKSVWVNLS
>LR134328.1|VEF49790.1|4091768_4093142_-|aminotransferase
MSQQTETLFNELSALDKKHILHPSTNPKLHSEIGPKLIFESGEGIYLKDMGGKTYIDGVSMLWNVNVGHGVKELADAAYEQMTKAAYTTTFYGYSNEASVRLAQKIAEVTPGDLNTIFYTSGGSESNDTAFKLSRSYWDLKGKKDKKLIISLRRGYHGVTIATQRATGIDAYREFSGSGDPNIVNAKPHLTECELGDKSHPEYEGSIRSIIEKEGADKVAAVILEPVQGAGGVHVPPEGYLKAVRALCDEFDIHMIADEIICGFGRTGKMFGVDHWDVVPDFMCVAKGMTSGYVQLGGVLMTDEIRDTFHTYDGMLPHGFTYSGHPTACAVGLKNLEILERDSLIENARVMGDELKKGLAYLEDKYAFVGNTRNRGLLAGFDLMEDPAAGKPFDGSIQAAVTVVEESYKRGLLIRPFAFTPGMNIVAIAPPLVVNKEEVERIIAIVDDSIAAFAKTL
>LR134328.1|VEF49791.1|4093195_4094434_-|N-carbamoyl-L-amino-acid-amidohydrolase
MEKTLLKVNRERLLETIKVSSSIGPSGNGGLNRLALSEADKNMRDIFVDWLKEEGLEVRIDDFGNIYGKRKGKLEDGPSVAIGSHLDTQPCGGKYDGILGVLSGLEVIRVLNENDIETEYPVEIVNFTNEEGARFAPPMLGSGGITGDFTKDYIYGIKDAEGISFEQALTDIDYLGDSKNRLTNIKNFIELHIEQGPILHDKEKTIGVVQGIQGIDWFTVKVTGKTNHAGPTPMENRKDALVAASKMILKVNEITDEIKGLKTTIGKMDVRPNVTNVIPGEVEFTIDIRHEDNELRSHAFERLKEQLSAIALMSEVELTITTDWNTETTLFAPAVKDAIQEAANKFGYSSLELFSGPGHDAKYMAGVADSGMIFVPSIDGISHNEEELTLDDDIEKGANVLLYVVQKLAGTK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134328_2	2.9\|3583125\|33\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3583125-3583157	33	NZ_CP021678	Bacillus licheniformis strain SRCM100027 plasmid pBL027-1 sequence	76603-76635	3	0.909
LR134328_5	5.1\|4081616\|22\|LR134328\|CRISPRCasFinder	4081616-4081637	22	NZ_CP024312	Rhizobium sp. NXC24 plasmid pRspNXC24a, complete sequence	270196-270217	3	0.864
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	MH884513	Bacillus phage vB_BpsS-36, complete genome	21327-21360	4	0.882
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	MT586120	Synechococcus phage S-CAM7 isolate 0809CC03, complete genome	179656-179689	7	0.794
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	AY939844	Prochlorococcus phage P-SSM2, complete genome	21656-21689	7	0.794
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	KU686213	Synechococcus phage S-CAM7 isolate 0910SB42, complete genome	180670-180703	7	0.794
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	NC_031927	Synechococcus phage S-CAM7 isolate 0910CC49, complete genome	178260-178293	7	0.794
LR134328_2	2.40\|3585124\|33\|LR134328\|CRISPRCasFinder,CRT,PILER-CR	3585124-3585156	33	MN694341	Marine virus AFVG_250M558, complete genome	29395-29427	7	0.788
LR134328_6	6.2\|4081922\|30\|LR134328\|CRISPRCasFinder	4081922-4081951	30	MN694122	Marine virus AFVG_250M535, complete genome	1652-1681	7	0.767
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	MH629685	Synechococcus virus S-PRM1, complete genome	127255-127288	8	0.765
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	963359-963392	8	0.765
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	NC_031922	Synechococcus phage S-CAM9 isolate 1109NB16, complete genome	31969-32002	8	0.765
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	KU686204	Synechococcus phage S-CAM9 isolate 0808SB05, complete genome	31969-32002	8	0.765
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	KU686205	Synechococcus phage S-CAM9 isolate 0908SB82, complete genome	31969-32002	8	0.765
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	KT997873	Uncultured Mediterranean phage uvDeep-CGR2-KM21-C368, complete genome	20082-20115	8	0.765
LR134328_2	2.44\|3585388\|34\|LR134328\|CRISPRCasFinder,CRT,PILER-CR	3585388-3585421	34	NZ_CP020744	Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence	102030-102063	8	0.765
LR134328_2	2.44\|3585388\|34\|LR134328\|CRISPRCasFinder,CRT,PILER-CR	3585388-3585421	34	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	267679-267712	8	0.765
LR134328_2	2.44\|3585388\|34\|LR134328\|CRISPRCasFinder,CRT,PILER-CR	3585388-3585421	34	NZ_CP020434	Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence	194578-194611	8	0.765
LR134328_6	6.2\|4081922\|30\|LR134328\|CRISPRCasFinder	4081922-4081951	30	MN657028	Psychrobacter sp. strain ANT_P13 plasmid pA13P4, complete sequence	12796-12825	8	0.733
LR134328_6	6.2\|4081922\|30\|LR134328\|CRISPRCasFinder	4081922-4081951	30	MN657044	Psychrobacter sp. strain ANT_P18B plasmid pA18BP3, complete sequence	9061-9090	8	0.733
LR134328_6	6.2\|4081922\|30\|LR134328\|CRISPRCasFinder	4081922-4081951	30	MN657053	Psychrobacter sp. strain ANT_P19 plasmid pA19P4, complete sequence	9181-9210	8	0.733
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	AY939844	Prochlorococcus phage P-SSM2, complete genome	21674-21707	9	0.735
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	MN693263	Marine virus AFVG_25M296, complete genome	14252-14285	9	0.735
LR134328_2	2.13\|3583389\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3583389-3583422	34	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	581588-581621	9	0.735
LR134328_2	2.25\|3584192\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3584192-3584225	34	MK373791	Escherichia phage vB_EcoS_WFI, complete genome	30002-30035	9	0.735
LR134328_2	2.25\|3584192\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3584192-3584225	34	MN850650	Escherichia phage jat, complete genome	25363-25396	9	0.735
LR134328_2	2.34\|3584725\|34\|LR134328\|CRISPRCasFinder,CRT,PILER-CR	3584725-3584758	34	NZ_AP018829	Asticcacaulis excentricus strain M6 plasmid pASEM-1, complete sequence	94359-94392	9	0.735
LR134328_7	7.2\|4082157\|32\|LR134328\|CRISPRCasFinder	4082157-4082188	32	KX578042	Leuconostoc phage Ln-7, complete genome	800-831	9	0.719
LR134328_7	7.2\|4082157\|32\|LR134328\|CRISPRCasFinder	4082157-4082188	32	GQ451696	Leuconostoc phage 1-A4, complete genome	28660-28691	9	0.719
LR134328_7	7.2\|4082157\|32\|LR134328\|CRISPRCasFinder	4082157-4082188	32	KM262191	Leuconostoc phage Ln-8, complete genome	800-831	9	0.719
LR134328_7	7.2\|4082157\|32\|LR134328\|CRISPRCasFinder	4082157-4082188	32	KC013026	Leuconostoc phage phiLN25, complete genome	789-820	9	0.719
LR134328_2	2.10\|3583190\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3583190-3583223	34	NC_014172	Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence	138909-138942	10	0.706
LR134328_2	2.32\|3584593\|34\|LR134328\|CRISPRCasFinder,CRT	3584593-3584626	34	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1981067-1981100	10	0.706
LR134328_2	2.32\|3584593\|34\|LR134328\|CRISPRCasFinder,CRT	3584593-3584626	34	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1658262-1658295	10	0.706
LR134328_4	4.1\|3926958\|32\|LR134328\|CRISPRCasFinder	3926958-3926989	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	825767-825798	10	0.688
LR134328_7	7.2\|4082157\|32\|LR134328\|CRISPRCasFinder	4082157-4082188	32	NZ_CP019447	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-2, complete sequence	15683-15714	10	0.688
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	CP024687	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence	168912-168945	11	0.676
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	CP024687	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence	168966-168999	11	0.676
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	NZ_CP012105	Bacillus thuringiensis strain HS18-1 plasmid pHS18-6, complete sequence	2713-2746	11	0.676
LR134328_2	2.5\|3582860\|34\|LR134328\|PILER-CR,CRISPRCasFinder,CRT	3582860-3582893	34	NZ_CP012105	Bacillus thuringiensis strain HS18-1 plasmid pHS18-6, complete sequence	2767-2800	11	0.676
LR134328_4	4.1\|3926958\|32\|LR134328\|CRISPRCasFinder	3926958-3926989	32	NZ_CP010241	Escherichia coli strain C7 plasmid A, complete sequence	43625-43656	11	0.656
LR134328_4	4.1\|3926958\|32\|LR134328\|CRISPRCasFinder	3926958-3926989	32	NZ_CP010120	Escherichia coli strain C3 plasmid A, complete sequence	18718-18749	11	0.656
LR134328_4	4.2\|3927018\|32\|LR134328\|CRISPRCasFinder	3927018-3927049	32	NZ_CP032413	Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence	141-172	11	0.656
LR134328_4	4.2\|3927018\|32\|LR134328\|CRISPRCasFinder	3927018-3927049	32	NZ_CP020864	Paenibacillus sp. Cedars plasmid unnamed1, complete sequence	223709-223740	11	0.656

1. spacer 2.9|3583125|33|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021678 (Bacillus licheniformis strain SRCM100027 plasmid pBL027-1 sequence) position: , mismatch: 3, identity: 0.909

ttattagtgccgcgcatgaagacatgagatttg	CRISPR spacer
ttgttagtgccgcgcatgaagacatgagattgt	Protospacer
**.****************************

2. spacer 5.1|4081616|22|LR134328|CRISPRCasFinder matches to NZ_CP024312 (Rhizobium sp. NXC24 plasmid pRspNXC24a, complete sequence) position: , mismatch: 3, identity: 0.864

tgcgttagagggcagatgaaaa	CRISPR spacer
caagttagagggcagatgaaaa	Protospacer
.. *******************

3. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to MH884513 (Bacillus phage vB_BpsS-36, complete genome) position: , mismatch: 4, identity: 0.882

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
gcgtggtccagctggtcctactggtccaaaaggt	Protospacer
.*. ************************ *****

4. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to MT586120 (Synechococcus phage S-CAM7 isolate 0809CC03, complete genome) position: , mismatch: 7, identity: 0.794

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
acaaggtccagctggtccaacgggcgcaacgggt	Protospacer
****************** ** **. **  .***

5. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to AY939844 (Prochlorococcus phage P-SSM2, complete genome) position: , mismatch: 7, identity: 0.794

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
aacaggtccagcaggtcctacaggtccaactggt	Protospacer
*  ********* ******** ******   ***

6. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to KU686213 (Synechococcus phage S-CAM7 isolate 0910SB42, complete genome) position: , mismatch: 7, identity: 0.794

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
acaaggtccagctggtccaacgggcgcaacgggt	Protospacer
****************** ** **. **  .***

7. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to NC_031927 (Synechococcus phage S-CAM7 isolate 0910CC49, complete genome) position: , mismatch: 7, identity: 0.794

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
acaaggtccagctggtccaacgggcgcaacgggt	Protospacer
****************** ** **. **  .***

8. spacer 2.40|3585124|33|LR134328|CRISPRCasFinder,CRT,PILER-CR matches to MN694341 (Marine virus AFVG_250M558, complete genome) position: , mismatch: 7, identity: 0.788

tacaagcgattggcggacgagtttgg-tgacgaa	CRISPR spacer
agcaagcgatgggaggacgagtttggaccacga-	Protospacer
 .******** ** ************ . ****

9. spacer 6.2|4081922|30|LR134328|CRISPRCasFinder matches to MN694122 (Marine virus AFVG_250M535, complete genome) position: , mismatch: 7, identity: 0.767

atcaatggaggggattgaaaaagattggtc	CRISPR spacer
tgtaaaagaggggagtgaaaaagattgttc	Protospacer
  .** .******* ************ **

10. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to MH629685 (Synechococcus virus S-PRM1, complete genome) position: , mismatch: 8, identity: 0.765

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
tcaaggtcctgcaggtcctactggtcctaccggc	Protospacer
 ******** ** **************    **.

11. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.765

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
gcaaggtcccactggtcctactggtcccactgct	Protospacer
.******** .****************    * *

12. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to NC_031922 (Synechococcus phage S-CAM9 isolate 1109NB16, complete genome) position: , mismatch: 8, identity: 0.765

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
tacaggtcctgctggtcctactggcccaacgggt	Protospacer
   ****** **************.***  .***

13. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to KU686204 (Synechococcus phage S-CAM9 isolate 0808SB05, complete genome) position: , mismatch: 8, identity: 0.765

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
tacaggtcctgctggtcctactggcccaacgggt	Protospacer
   ****** **************.***  .***

14. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to KU686205 (Synechococcus phage S-CAM9 isolate 0908SB82, complete genome) position: , mismatch: 8, identity: 0.765

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
tacaggtcctgctggtcctactggcccaacgggt	Protospacer
   ****** **************.***  .***

15. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to KT997873 (Uncultured Mediterranean phage uvDeep-CGR2-KM21-C368, complete genome) position: , mismatch: 8, identity: 0.765

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
aactggagctgctggtcctcctggtcctcaaggt	Protospacer
*   **  * ********* ******* ******

16. spacer 2.44|3585388|34|LR134328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ggaaaaaatctcaaaattaaaag---acttgagtatg	CRISPR spacer
ggaataaatctcaaaatgaaaagaatacttatat---	Protospacer
**** ************ *****   ****. .*

17. spacer 2.44|3585388|34|LR134328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ggaaaaaatctcaaaattaaaag---acttgagtatg	CRISPR spacer
ggaataaatctcaaaatgaaaagaatacttatat---	Protospacer
**** ************ *****   ****. .*

18. spacer 2.44|3585388|34|LR134328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020434 (Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.765

ggaaaaaatctcaaaattaaaag---acttgagtatg	CRISPR spacer
ggaataaatctcaaaataaaaagaatacttatat---	Protospacer
**** ************ *****   ****. .*

19. spacer 6.2|4081922|30|LR134328|CRISPRCasFinder matches to MN657028 (Psychrobacter sp. strain ANT_P13 plasmid pA13P4, complete sequence) position: , mismatch: 8, identity: 0.733

atcaatggaggggattgaaaaagattggtc	CRISPR spacer
gcaaatggaggcgattgcaaaagattctac	Protospacer
.. ******** ***** ********   *

20. spacer 6.2|4081922|30|LR134328|CRISPRCasFinder matches to MN657044 (Psychrobacter sp. strain ANT_P18B plasmid pA18BP3, complete sequence) position: , mismatch: 8, identity: 0.733

atcaatggaggggattgaaaaagattggtc	CRISPR spacer
gcaaatggaggcgattgcaaaagattctac	Protospacer
.. ******** ***** ********   *

21. spacer 6.2|4081922|30|LR134328|CRISPRCasFinder matches to MN657053 (Psychrobacter sp. strain ANT_P19 plasmid pA19P4, complete sequence) position: , mismatch: 8, identity: 0.733

atcaatggaggggattgaaaaagattggtc	CRISPR spacer
gcaaatggaggcgattgcaaaagattctac	Protospacer
.. ******** ***** ********   *

22. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to AY939844 (Prochlorococcus phage P-SSM2, complete genome) position: , mismatch: 9, identity: 0.735

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
tacaggtccaactggtccaactggtccgactggt	Protospacer
   *******.******* ********.   ***

23. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to MN693263 (Marine virus AFVG_25M296, complete genome) position: , mismatch: 9, identity: 0.735

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
tacaggtccagcaggtcctactggacctacagga	Protospacer
   ********* *********** **   ***

24. spacer 2.13|3583389|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 9, identity: 0.735

taaatatttaatgtgagttgattatgattatgtt	CRISPR spacer
ttaccatttaatgtgaagtgattatgatttacta	Protospacer
* * .***********. ***********   *

25. spacer 2.25|3584192|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to MK373791 (Escherichia phage vB_EcoS_WFI, complete genome) position: , mismatch: 9, identity: 0.735

cgcaaacatcaatgaggacatcacaatgtacaag	CRISPR spacer
ggcccgcagcaatgaggacttcacaatgtacggc	Protospacer
 **  .** ********** ***********..

26. spacer 2.25|3584192|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to MN850650 (Escherichia phage jat, complete genome) position: , mismatch: 9, identity: 0.735

cgcaaacatcaatgaggacatcacaatgtacaag	CRISPR spacer
ggcccgcatcaatgaggaccacacaatgtacggc	Protospacer
 **  .*************  **********..

27. spacer 2.34|3584725|34|LR134328|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018829 (Asticcacaulis excentricus strain M6 plasmid pASEM-1, complete sequence) position: , mismatch: 9, identity: 0.735

ggtgcataagcgcttggtctccggactgcatacg	CRISPR spacer
cctgtcgtggcgctgggtcgccggactgcatacg	Protospacer
  **.   .***** **** **************

28. spacer 7.2|4082157|32|LR134328|CRISPRCasFinder matches to KX578042 (Leuconostoc phage Ln-7, complete genome) position: , mismatch: 9, identity: 0.719

atcaatagcgtggattaaataccaggttggtc	CRISPR spacer
ctcaatagcgtggttcaaataccaaactgcct	Protospacer
 ************ *.********...** ..

29. spacer 7.2|4082157|32|LR134328|CRISPRCasFinder matches to GQ451696 (Leuconostoc phage 1-A4, complete genome) position: , mismatch: 9, identity: 0.719

atcaatagcgtggattaaataccaggttggtc	CRISPR spacer
ctcaatagcgtggttcaaataccaaactgcct	Protospacer
 ************ *.********...** ..

30. spacer 7.2|4082157|32|LR134328|CRISPRCasFinder matches to KM262191 (Leuconostoc phage Ln-8, complete genome) position: , mismatch: 9, identity: 0.719

atcaatagcgtggattaaataccaggttggtc	CRISPR spacer
ctcaatagcgtggttcaaataccaaactgcct	Protospacer
 ************ *.********...** ..

31. spacer 7.2|4082157|32|LR134328|CRISPRCasFinder matches to KC013026 (Leuconostoc phage phiLN25, complete genome) position: , mismatch: 9, identity: 0.719

atcaatagcgtggattaaataccaggttggtc	CRISPR spacer
ctcaatagcgtggttcaaataccaaactgcct	Protospacer
 ************ *.********...** ..

32. spacer 2.10|3583190|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to NC_014172 (Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence) position: , mismatch: 10, identity: 0.706

ttgagttgtgtgagcaatattccattgatccact	CRISPR spacer
aagaaactggtgagcaatattctattgatacaca	Protospacer
  **. .  *************.****** ***

33. spacer 2.32|3584593|34|LR134328|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 10, identity: 0.706

gtcgagcaggacggtgaacgattt--------taccttttcg	CRISPR spacer
gtcgcgcacgacggtgaacgatttgcacgagata--------	Protospacer
**** *** ***************        **

34. spacer 2.32|3584593|34|LR134328|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 10, identity: 0.706

gtcgagcaggacggtgaacgattt--------taccttttcg	CRISPR spacer
gtcgcgcacgacggtgaacgatttgcacgagata--------	Protospacer
**** *** ***************        **

35. spacer 4.1|3926958|32|LR134328|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

ggccgactttcagaattactatccagaattcc	CRISPR spacer
caaggactttcagaatgactattcagaccccg	Protospacer
 .  ************ *****.**** ..*

36. spacer 7.2|4082157|32|LR134328|CRISPRCasFinder matches to NZ_CP019447 (Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-2, complete sequence) position: , mismatch: 10, identity: 0.688

atcaatagcgtggattaaataccaggttggtc	CRISPR spacer
ccttgaaacgtggatcaaagaccaggttggtt	Protospacer
 .. . *.*******.*** ***********.

37. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to CP024687 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence) position: , mismatch: 11, identity: 0.676

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
ttgaggtccagttggtccttctggtcctggttct	Protospacer
 ..********.******* *******  .   *

38. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to CP024687 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence) position: , mismatch: 11, identity: 0.676

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
ttgaggtccagttggtccttctggtcctggttct	Protospacer
 ..********.******* *******  .   *

39. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012105 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-6, complete sequence) position: , mismatch: 11, identity: 0.676

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
ttgaggtccagttggtccttctggtcctggctct	Protospacer
 ..********.******* *******  .   *

40. spacer 2.5|3582860|34|LR134328|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012105 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-6, complete sequence) position: , mismatch: 11, identity: 0.676

acaaggtccagctggtcctactggtccacaaggt	CRISPR spacer
ttgaggtccagttggtccttctggtcctggttct	Protospacer
 ..********.******* *******  .   *

41. spacer 4.1|3926958|32|LR134328|CRISPRCasFinder matches to NZ_CP010241 (Escherichia coli strain C7 plasmid A, complete sequence) position: , mismatch: 11, identity: 0.656

ggccgactttcagaattactatccagaattcc	CRISPR spacer
tatgagctttcagagtaactatccagaatgag	Protospacer
 .. ..********.* ************

42. spacer 4.1|3926958|32|LR134328|CRISPRCasFinder matches to NZ_CP010120 (Escherichia coli strain C3 plasmid A, complete sequence) position: , mismatch: 11, identity: 0.656

ggccgactttcagaattactatccagaattcc	CRISPR spacer
tatgagctttcagagtaactatccagaatgag	Protospacer
 .. ..********.* ************

43. spacer 4.2|3927018|32|LR134328|CRISPRCasFinder matches to NZ_CP032413 (Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence) position: , mismatch: 11, identity: 0.656

ggccggaattccaatatactttccgcttttca	CRISPR spacer
tttcgaaattcgaatatactttccgcgccagc	Protospacer
  .**.***** ************** ..

44. spacer 4.2|3927018|32|LR134328|CRISPRCasFinder matches to NZ_CP020864 (Paenibacillus sp. Cedars plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

ggccggaattccaatatactttccgcttttca	CRISPR spacer
tttcgaaattcgaatatactttccgcgccagc	Protospacer
  .**.***** ************** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2658 : 10921

Bacillus_virus(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF46030.1\|2658_5154_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	5.7e-111	36.4
VEF46031.1\|5660_5903_-	DNA gyrase subunit B	G3M9Z3	Bacillus_virus	8.1e-15	61.4
VEF46032.1\|5848_6298_-	DNA gyrase subunit beta	G3M9Z3	Bacillus_virus	2.6e-35	57.4
VEF46033.1\|6254_6698_-	DNA gyrase subunit B	G3M9Z3	Bacillus_virus	1.9e-09	43.0
VEF46034.1\|6694_7588_-	DNA gyrase subunit B	G3M9Z3	Bacillus_virus	5.6e-53	43.2
VEF46035.1\|7629_7878_-	regulator of the extracellular matrix	NA	NA	NA	NA
VEF46036.1\|7889_8816_-	DNA replication and repair protein RecF	NA	NA	NA	NA
VEF46037.1\|8802_9006_-	recombination protein F	NA	NA	NA	NA
VEF46038.1\|9018_9234_-	S4 domain-containing protein YaaA	NA	NA	NA	NA
VEF46039.1\|9784_10921_-	DNA polymerase III subunit beta	D0R7I4	Paenibacillus_phage	1.8e-16	33.6

DBSCAN-SWA_2

1529344 : 1611992

Paenibacillus_phage(26.67%)

transposase,tRNA,coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF47426.1\|1529344_1530334_-\|protease	intracellular serine protease	A0A127AWU5	Bacillus_phage	7.8e-80	52.7
VEF47427.1\|1531035_1531752_-\|transposase	transposase IS3/IS911	A0A0C5AEA5	Paenibacillus_phage	6.9e-54	49.6
VEF47428.1\|1531910_1532606_-\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	4.9e-28	38.1
VEF47429.1\|1532590_1532920_-	Uncharacterised protein	NA	NA	NA	NA
VEF47430.1\|1533239_1533380_+	Uncharacterised protein	NA	NA	NA	NA
VEF47431.1\|1533585_1534827_-	major facilitator superfamily protein	A0A2H4UVM2	Bodo_saltans_virus	1.8e-09	31.2
VEF47432.1\|1534961_1535474_+	C56 family peptidase	NA	NA	NA	NA
VEF47433.1\|1535573_1536029_+	MarR family transcriptional regulator	NA	NA	NA	NA
VEF47434.1\|1536039_1536858_+	glutamate racemase	NA	NA	NA	NA
VEF47435.1\|1537762_1538836_+	germination and sporulation lytic protein	NA	NA	NA	NA
VEF47436.1\|1539118_1539892_+	ribonuclease PH	NA	NA	NA	NA
VEF47437.1\|1539891_1540485_+	nucleoside-triphosphatase	NA	NA	NA	NA
VEF47438.1\|1540576_1542019_+	major facilitator superfamily transporter	NA	NA	NA	NA
VEF47439.1\|1542312_1542576_-	excalibur domain-containing protein	NA	NA	NA	NA
VEF47440.1\|1542943_1543591_+	putative fibronectin binding protein	NA	NA	NA	NA
VEF47441.1\|1543952_1544885_-	SPbeta phage DNA nuclease, lipoprotein	A0A1P8CWK6	Bacillus_phage	2.2e-60	60.4
VEF47442.1\|1545091_1546240_+	saccharopine dehydrogenase, NADP+, L-lysine forming; L-lysine dehydrogenase	NA	NA	NA	NA
VEF47443.1\|1546674_1547868_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
VEF47444.1\|1547883_1549002_-	L-carnitine dehydratase/bile acid-inducible protein F	NA	NA	NA	NA
VEF47445.1\|1549201_1550338_+	TPR-like protein	NA	NA	NA	NA
VEF47446.1\|1550942_1552232_+	prolyl isomerase	NA	NA	NA	NA
VEF47447.1\|1552495_1553746_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.4e-150	65.1
VEF47448.1\|1553964_1555632_+\|protease	ATP-dependent protease LonB	A0A076FMQ5	Aureococcus_anophage	2.4e-12	32.3
VEF47449.1\|1555760_1558085_+\|protease	class III heat-shock ATP-dependent Lon protease	A0A0R6PGP8	Moraxella_phage	1.7e-178	43.4
VEF47450.1\|1558081_1558666_+	small GTP-binding protein	NA	NA	NA	NA
VEF47451.1\|1559406_1559895_-	putative integral inner membrane protein	NA	NA	NA	NA
VEF47452.1\|1560233_1561586_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
VEF47453.1\|1561599_1562430_+	uroporphyrin-III C-methyltransferase	NA	NA	NA	NA
VEF47454.1\|1562477_1563410_+	porphobilinogen deaminase	NA	NA	NA	NA
VEF47455.1\|1563406_1564210_+	Uroporphyrinogen III synthase HEM4	NA	NA	NA	NA
VEF47456.1\|1564212_1565187_+	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA
VEF47457.1\|1565541_1566834_+	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA
VEF47458.1\|1566853_1566958_+	Uncharacterised protein	NA	NA	NA	NA
VEF47459.1\|1566996_1568211_+\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	3.8e-28	25.3
VEF47460.1\|1569203_1570337_+\|coat	spore coat assembly protein SpoVID	NA	NA	NA	NA
VEF47461.1\|1570479_1571511_+\|coat	spore coat protein YsxE	NA	NA	NA	NA
VEF47462.1\|1571525_1571717_-	Uncharacterized membrane protein yszA	NA	NA	NA	NA
VEF47463.1\|1572212_1574861_+\|tRNA	valyl-tRNA synthetase	A0A1V0S951	Catovirus	4.7e-164	43.2
VEF47464.1\|1575023_1576358_+	folylpolyglutamate synthase	NA	NA	NA	NA
VEF47465.1\|1576430_1578137_+	GAF sensor-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	7.8e-19	42.0
VEF47466.1\|1578323_1579064_+	prepilin peptidase	NA	NA	NA	NA
VEF47467.1\|1579419_1580448_+	stage II sporulation protein B	NA	NA	NA	NA
VEF47468.1\|1580618_1581185_+	Maf-like protein	NA	NA	NA	NA
VEF47469.1\|1581211_1581904_+	DNA repair protein RadC	NA	NA	NA	NA
VEF47470.1\|1582052_1583063_+	rod shape-determining protein MreB	NA	NA	NA	NA
VEF47471.1\|1583493_1584363_+	rod shape-determining protein MreC	NA	NA	NA	NA
VEF47472.1\|1584362_1584881_+	rod shape-determining protein MreD	NA	NA	NA	NA
VEF47473.1\|1585396_1586080_+	septum site-determining protein MinC	NA	NA	NA	NA
VEF47474.1\|1586072_1586879_+	septum site-determining protein MinD	NA	NA	NA	NA
VEF47475.1\|1587451_1588213_+	stage IV sporulation protein FA	NA	NA	NA	NA
VEF47476.1\|1588205_1589057_+	stage IV sporulation protein FB	NA	NA	NA	NA
VEF47477.1\|1589243_1589552_+	50S ribosomal protein L21	NA	NA	NA	NA
VEF47478.1\|1589564_1589903_+	putative ribosomal protein	NA	NA	NA	NA
VEF47479.1\|1589909_1590200_+	50S ribosomal protein L27	NA	NA	NA	NA
VEF47480.1\|1590334_1590877_+	signal transduction histidine kinase regulating citrate/malate metabolism	NA	NA	NA	NA
VEF47481.1\|1590898_1592191_+	GTPase	NA	NA	NA	NA
VEF47482.1\|1592217_1592673_+	ACT domain-containing protein PheB	NA	NA	NA	NA
VEF47483.1\|1592676_1592868_+	Uncharacterised protein	NA	NA	NA	NA
VEF47484.1\|1593543_1594089_-	transcriptional repressor NadR	NA	NA	NA	NA
VEF47485.1\|1594247_1595339_+\|coat	spore coat assembly protein SafA	NA	NA	NA	NA
VEF47486.1\|1595331_1596324_+	aminoglycoside phosphotransferase	NA	NA	NA	NA
VEF47487.1\|1596410_1597127_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA
VEF47488.1\|1597305_1598241_-	regulatory protein MsrR	NA	NA	NA	NA
VEF47489.1\|1598746_1599292_+	sporulation-like protein BofC	NA	NA	NA	NA
VEF47490.1\|1599405_1600161_+	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	9.9e-59	44.4
VEF47491.1\|1600373_1600595_-	Uncharacterised protein	NA	NA	NA	NA
VEF47492.1\|1601461_1601590_+	Uncharacterised protein	NA	NA	NA	NA
VEF47493.1\|1601606_1601993_+	sporulation-control protein Spo0M	NA	NA	NA	NA
VEF47494.1\|1602267_1602948_+\|protease	Zn-dependent protease	NA	NA	NA	NA
VEF47495.1\|1603175_1604078_-	DMT family transport protein	NA	NA	NA	NA
VEF47496.1\|1604569_1606411_+	glucosamine/fructose-6-phosphate aminotransferase	M1HQK2	Paramecium_bursaria_Chlorella_virus	9.7e-100	39.8
VEF47497.1\|1606877_1607585_+	nucleotidyltransferase	NA	NA	NA	NA
VEF47498.1\|1608243_1609146_+	putative secreted protein	NA	NA	NA	NA
VEF47499.1\|1609388_1609865_+	cell wall hydrolase	NA	NA	NA	NA
VEF47500.1\|1609888_1610350_+\|coat	spore coat protein GerQ	NA	NA	NA	NA
VEF47501.1\|1610421_1611138_-\|transposase	transposase IS3/IS911	A0A0C5AEA5	Paenibacillus_phage	6.9e-54	49.6
VEF47502.1\|1611296_1611992_-\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	4.9e-28	38.1

DBSCAN-SWA_3

2321900 : 2381065

Paenibacillus_phage(30.77%)

coat,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF48217.1\|2321900_2322596_+\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	4.9e-28	38.1
VEF48218.1\|2322754_2323471_+\|transposase	transposase IS3/IS911	A0A0C5AEA5	Paenibacillus_phage	6.9e-54	49.6
VEF48219.1\|2323537_2324509_-	Rhodanese domain-containing protein	NA	NA	NA	NA
VEF48220.1\|2325134_2325686_-	Uncharacterised protein	NA	NA	NA	NA
VEF48221.1\|2326274_2327750_-	amidase	NA	NA	NA	NA
VEF48222.1\|2327868_2329113_-	fosmidomycin resistance protein	NA	NA	NA	NA
VEF48223.1\|2329109_2329457_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEF48224.1\|2329647_2329887_+	protein YkuS	NA	NA	NA	NA
VEF48225.1\|2329919_2330432_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA
VEF48226.1\|2330401_2331691_-	molybdopterin molybdochelatase	NA	NA	NA	NA
VEF48227.1\|2331716_2332724_-	molybdenum cofactor biosynthesis protein A	NA	NA	NA	NA
VEF48228.1\|2332911_2333490_+	LemA family protein	NA	NA	NA	NA
VEF48229.1\|2333489_2334254_+	Domain of uncharacterised function (DUF477)	NA	NA	NA	NA
VEF48230.1\|2334940_2336857_-	von Willebrand factor A	NA	NA	NA	NA
VEF48231.1\|2336868_2337744_-	putative nitric-oxide reductase	A0A0E3HR89	Synechococcus_phage	6.4e-09	32.6
VEF48232.1\|2337836_2338379_-	repressor of ComK	NA	NA	NA	NA
VEF48233.1\|2338626_2340111_+	aldehyde dehydrogenase	NA	NA	NA	NA
VEF48234.1\|2340284_2340407_+	Sporulation inhibitor A	NA	NA	NA	NA
VEF48235.1\|2340521_2340776_-	Domain of uncharacterised function (DUF2935)	NA	NA	NA	NA
VEF48236.1\|2340839_2341328_-	Domain of uncharacterised function (DUF2935)	A0A2I2L551	Orpheovirus	4.8e-22	39.6
VEF48237.1\|2341577_2342846_-	2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase	NA	NA	NA	NA
VEF48238.1\|2342885_2345729_-	2-oxoglutarate dehydrogenase E1	NA	NA	NA	NA
VEF48239.1\|2346123_2346591_+\|coat	spore coat protein	NA	NA	NA	NA
VEF48240.1\|2346670_2347939_+	major facilitator superfamily protein	NA	NA	NA	NA
VEF48241.1\|2348190_2348358_-	Uncharacterised protein	NA	NA	NA	NA
VEF48242.1\|2348296_2348920_-	thioredoxin	NA	NA	NA	NA
VEF48243.1\|2349037_2349223_-	small, acid-soluble spore protein H	NA	NA	NA	NA
VEF48244.1\|2349283_2350282_-	luciferase-like monooxygenase	NA	NA	NA	NA
VEF48245.1\|2350394_2351351_-	ABC transporter periplasmic protein	NA	NA	NA	NA
VEF48246.1\|2351371_2352133_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.2e-16	24.8
VEF48247.1\|2352129_2353080_-	iron-siderophore ABC transporter permease	NA	NA	NA	NA
VEF48248.1\|2353072_2354023_-	iron-siderophore ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.0e-89	52.2
VEF48249.1\|2354191_2354920_-	ABC transporter substrate-binding protein EcsC	NA	NA	NA	NA
VEF48250.1\|2355042_2356965_-	cadmium-transporting ATPase	E4ZFI9	Streptococcus_phage	1.7e-126	41.5
VEF48251.1\|2357375_2359268_+	cadmium-transporting ATPase	E4ZFI9	Streptococcus_phage	1.4e-114	39.2
VEF48252.1\|2359406_2360732_-	magnesium transporter	NA	NA	NA	NA
VEF48253.1\|2361269_2361857_-	phosphoesterase PA-phosphatase-like protein	NA	NA	NA	NA
VEF48254.1\|2362024_2362720_+\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	4.9e-28	38.1
VEF48255.1\|2362878_2363595_+\|transposase	transposase IS3/IS911	A0A0C5AEA5	Paenibacillus_phage	6.9e-54	49.6
VEF48256.1\|2363803_2363989_-	Uncharacterised protein	NA	NA	NA	NA
VEF48257.1\|2364007_2367142_-	SMC domain-containing protein	G3MAB6	Bacillus_virus	2.1e-09	24.1
VEF48258.1\|2367138_2368284_-	putative exonuclease SbcD	NA	NA	NA	NA
VEF48259.1\|2368412_2368550_-	YvrJ protein family	NA	NA	NA	NA
VEF48260.1\|2368886_2369105_-	Protein of uncharacterised function (DUF2922)	NA	NA	NA	NA
VEF48261.1\|2369135_2369354_-	Protein of uncharacterised function (DUF1659)	NA	NA	NA	NA
VEF48262.1\|2369546_2369972_+	YneK	NA	NA	NA	NA
VEF48263.1\|2370448_2370844_+	crcB protein	NA	NA	NA	NA
VEF48264.1\|2370840_2371197_+	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	6.1e-11	36.7
VEF48265.1\|2371165_2371684_-	GCN5-like N-acetyltransferase	NA	NA	NA	NA
VEF48266.1\|2371747_2372236_-	integral inner membrane protein	NA	NA	NA	NA
VEF48267.1\|2372478_2372652_+	Spo0A-P phosphatase	NA	NA	NA	NA
VEF48268.1\|2372854_2373076_-	UPF0154 protein	NA	NA	NA	NA
VEF48269.1\|2373152_2373590_-	SirA	NA	NA	NA	NA
VEF48270.1\|2373827_2375846_-	transketolase	NA	NA	NA	NA
VEF48271.1\|2375975_2376209_-	UPF0291 protein	NA	NA	NA	NA
VEF48272.1\|2376296_2376950_-	Resolvase domain-containing protein	NA	NA	NA	NA
VEF48273.1\|2376973_2377174_-	Uncharacterised protein	NA	NA	NA	NA
VEF48274.1\|2377332_2377962_+	LexA repressor	A0A1B2APZ1	Phage_Wrath	4.6e-17	65.2
VEF48275.1\|2378024_2379113_-	stage II sporulation protein P	NA	NA	NA	NA
VEF48276.1\|2379802_2381065_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

3629058 : 3669349

Bacillus_phage(20.0%)

transposase,integrase,protease

attL 3633044:3633063|attR 3669985:3670004

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF49402.1\|3629058_3630213_-\|protease	serine protease	W5SAB9	Pithovirus	7.3e-13	30.2
VEF49403.1\|3630381_3631656_-	integral membrane sensor signal transduction histidine kinase	A0A1V0SGX0	Hokovirus	1.2e-16	29.3
VEF49404.1\|3631792_3632467_-	winged helix family two component transcriptional regulator	W8CYM9	Bacillus_phage	1.2e-39	36.8
3633044:3633063	attL	NA	NA	NA	NA
VEF49405.1\|3633499_3634774_-	proton/sodium-glutamate symport protein	NA	NA	NA	NA
VEF49406.1\|3634933_3635776_-	two-component response regulator	NA	NA	NA	NA
VEF49407.1\|3635828_3637091_-	two-component sensor histidine kinase	NA	NA	NA	NA
VEF49408.1\|3637240_3638401_-	multidrug-efflux transporter	NA	NA	NA	NA
VEF49409.1\|3638572_3638725_-	Uncharacterised protein	NA	NA	NA	NA
VEF49410.1\|3639232_3639748_-	group-specific protein	NA	NA	NA	NA
VEF49411.1\|3640162_3641488_-	C40 family peptidase	A0A0A0RVE6	Bacillus_phage	4.9e-21	48.3
VEF49412.1\|3641884_3642937_-	putative threonine aldolase	NA	NA	NA	NA
VEF49413.1\|3643083_3643584_-	Predicted integral membrane protein	NA	NA	NA	NA
VEF49414.1\|3643989_3644799_-\|integrase	integrase catalytic subunit	A0A2I6AZV9	Macacine_betaherpesvirus	3.8e-40	42.9
VEF49415.1\|3644816_3645383_-\|transposase	transposase	NA	NA	NA	NA
VEF49416.1\|3645757_3646075_-	YvgT	NA	NA	NA	NA
VEF49417.1\|3646038_3646356_-	YvgT	NA	NA	NA	NA
VEF49418.1\|3646491_3646779_+	Uncharacterised protein	NA	NA	NA	NA
VEF49419.1\|3646758_3647835_-\|transposase	transposase	M4I0N8	Staphylococcus_phage	9.0e-05	23.2
VEF49420.1\|3647902_3648322_+	acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
VEF49421.1\|3648686_3650879_-	PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
VEF49422.1\|3651454_3654793_-	LPXTG-motif cell wall anchor domain-containing protein	NA	NA	NA	NA
VEF49423.1\|3655175_3656051_-	carboxylesterase NP	A0A2K9KZN8	Tupanvirus	1.2e-07	30.2
VEF49424.1\|3656085_3656394_-	acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA
VEF49425.1\|3656684_3657221_-	Protein of uncharacterised function (DUF1572)	NA	NA	NA	NA
VEF49426.1\|3657643_3658453_-	threonine dehydratase	NA	NA	NA	NA
VEF49427.1\|3658449_3658674_-	threonine dehydratase	NA	NA	NA	NA
VEF49428.1\|3658786_3659620_+	LysR family transcriptional regulator	NA	NA	NA	NA
VEF49429.1\|3659874_3661137_-\|transposase	transposase	NA	NA	NA	NA
VEF49430.1\|3661752_3663381_-	class I heat-shock protein (chaperonin) GroEL	A0A219YK78	uncultured_virus	2.4e-158	56.7
VEF49431.1\|3663436_3663721_-	co-chaperonin GroES	A0A221S3C8	uncultured_virus	2.0e-20	54.8
VEF49432.1\|3664132_3664939_+	family 3 extracellular solute-binding protein	NA	NA	NA	NA
VEF49433.1\|3665143_3665947_+	family 3 extracellular solute-binding protein	NA	NA	NA	NA
VEF49434.1\|3665990_3666725_+	polar amino acid ABC transporter inner membrane subunit	NA	NA	NA	NA
VEF49435.1\|3666721_3667444_+	ABC transporter	G9BWD6	Planktothrix_phage	6.8e-33	39.1
VEF49436.1\|3667621_3668527_+	malonate efflux carrier	NA	NA	NA	NA
VEF49437.1\|3668605_3669349_+\|protease	putative membrane protease	NA	NA	NA	NA
3669985:3670004	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134328

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection