CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134336	Streptococcus oralis strain NCTC11427 genome assembly, chromosome: 1	1 crisprs	DEDDh,cas3,WYL,DinG	1	5	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134336_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134336_2

1375204-1375693

Orphan

Consensus_repeat	Method
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	PILER-CR
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	CRISPRCasFinder
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	CRT

7 spacers

The CRISPR arrays of LR134336_2

>merge|LR134336|2|1375204-1375693|PILER-CR,CRISPRCasFinder,CRT
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAACCTCAATCAATGGTACTCGTTAAAGGTGCTGGTTTTTGTAGTCTCCAAAATTGTGACCGATAAAACAAATATTCGTAAATACTTACTATTACGAATGTTTTTGTAGTCTCCAAAATTGTGACCGATAAAACTGGGTGAGTTGCGTGGAAAACAAAAATCAGGTTTTTGTAGTCTCCAAAATTGTGACCGATAAAACAAGTGCTTTATAACATCTTTGGAAGATTGAGTTTTTGTAGTCTCCAAAATTGTGACCGATAAAACAAAAGATCTATAATTTGTCTATATTTTCCTGTTTTTGTAGTCTCCAAAATTGTGACCGATAAAACTACGGAAACCATGTATACACTAGCGACTATGTTTTTATAGTCTCCAAAATTGTGACCGATAAAACTCAATGCGCTTCGAGGTACTGAGAATGATTGTTTTTATAGTCTCCAAAATTGTGACCGATAAAAC

>LR134336|2|1|1375204-1375693|PILER-CR
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	CTCAATCAATGGTACTCGTTAAAGGTGCTG
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	AAATATTCGTAAATACTTACTATTACGAAT
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	TGGGTGAGTTGCGTGGAAAACAAAAATCAG
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	AAGTGCTTTATAACATCTTTGGAAGATTGA
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	AAAAGATCTATAATTTGTCTATATTTTCCT
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	TACGGAAACCATGTATACACTAGCGACTAT
GTTTTTATAGTCTCCAAAATTGTGACCGATAAAAC	TCAATGCGCTTCGAGGTACTGAGAATGATT
GTTTTTATAGTCTCCAAAATTGTGACCGATAAAAC

>LR134336|2|2|1375204-1375693|CRISPRCasFinder
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	CTCAATCAATGGTACTCGTTAAAGGTGCTG
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	AAATATTCGTAAATACTTACTATTACGAAT
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	TGGGTGAGTTGCGTGGAAAACAAAAATCAG
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	AAGTGCTTTATAACATCTTTGGAAGATTGA
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	AAAAGATCTATAATTTGTCTATATTTTCCT
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	TACGGAAACCATGTATACACTAGCGACTAT
GTTTTTATAGTCTCCAAAATTGTGACCGATAAAAC	TCAATGCGCTTCGAGGTACTGAGAATGATT
GTTTTTATAGTCTCCAAAATTGTGACCGATAAAAC

>LR134336|2|1|1375204-1375693|CRT
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	CTCAATCAATGGTACTCGTTAAAGGTGCTG
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	AAATATTCGTAAATACTTACTATTACGAAT
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	TGGGTGAGTTGCGTGGAAAACAAAAATCAG
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	AAGTGCTTTATAACATCTTTGGAAGATTGA
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	AAAAGATCTATAATTTGTCTATATTTTCCT
GTTTTTGTAGTCTCCAAAATTGTGACCGATAAAAC	TACGGAAACCATGTATACACTAGCGACTAT
GTTTTTATAGTCTCCAAAATTGTGACCGATAAAAC	TCAATGCGCTTCGAGGTACTGAGAATGATT
GTTTTTATAGTCTCCAAAATTGTGACCGATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134336.1\|VEF79420.1\|1399533_1402326_-\|isoleucyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235588
LR134336.1\|VEF79411.1\|1373084_1374131_-\|ABC-transporter-Fe3+-siderophore,-permease	unknown	unknown	gnl\|CDD\|376439
LR134336.1\|VEF79418.1\|1384376_1390802_-\|zinc-metalloproteinase	unknown	unknown	gnl\|CDD\|369436
LR134336.1\|VEF79410.1\|1372327_1373083_-\|ABC-transporter,-Fe3+-siderophore,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
LR134336.1\|VEF79406.1\|1367363_1369700_-\|P-type-ATPase-metal-cation-transport	unknown	unknown	gnl\|CDD\|319795
LR134336.1\|VEF79404.1\|1365800_1366598_-\|NIF3-(NGG1p-interacting-factor-3)-family-protein	unknown	unknown	gnl\|CDD\|376614
LR134336.1\|VEF79422.1\|1403652_1404444_-\|YlmH-protein	unknown	unknown	gnl\|CDD\|225185
LR134336.1\|VEF79421.1\|1403389_1403644_-\|cell-division-protein-DivIVA	unknown	unknown	gnl\|CDD\|377456
LR134336.1\|VEF79413.1\|1376035_1376305_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
LR134336.1\|VEF79415.1\|1377487_1377868_-\|Prophage-Lp1-protein-6	unknown	unknown	unknown
LR134336.1\|VEF79416.1\|1378019_1383533_-\|IgA1-protease	unknown	unknown	gnl\|CDD\|369436
LR134336.1\|VEF79405.1\|1366584_1367262_-\|Bcl-2-family-protein	unknown	unknown	gnl\|CDD\|225258
LR134336.1\|VEF79407.1\|1369832_1370582_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223282
LR134336.1\|VEF79408.1\|1370624_1371317_-\|esterase	unknown	unknown	gnl\|CDD\|225375
LR134336.1\|VEF79417.1\|1383766_1384147_-\|integral-membrane-protein	unknown	unknown	unknown
LR134336.1\|VEF79419.1\|1391052_1399239_-\|Zinc-metalloprotease-zmpC	unknown	unknown	gnl\|CDD\|369436
LR134336.1\|VEF79414.1\|1376597_1377290_-\|phosphoglyceromutase	unknown	unknown	gnl\|CDD\|184517
LR134336.1\|VEF79412.1\|1374293_1374905_-\|Cad-superfamily-protein	unknown	unknown	gnl\|CDD\|281580
LR134336.1\|VEF79409.1\|1371297_1372308_-\|iron(III)-dicitrate-binding-lipoprotein	unknown	unknown	gnl\|CDD\|238568
LR134336.1\|VEF79403.1\|1364680_1365784_-\|oxidoreductase,-DadA-family-protein	unknown	unknown	gnl\|CDD\|223737

Protein	Function_ID	Function_description	E-value
LR134336.1\|VEF79411.1\|1373084_1374131_-\|ABC-transporter-Fe3+-siderophore,-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	4.65007e-74
LR134336.1\|VEF79418.1\|1384376_1390802_-\|zinc-metalloproteinase	gnl\|CDD\|369436	pfam07580, Peptidase_M26_C, M26 IgA1-specific Metallo-endopeptidase C-terminal region. These peptidases, which cleave mammalian IgA, are found in Gram-positive bacteria. Often found associated with pfam00746, they may be attached to the cell wall.	0
LR134336.1\|VEF79410.1\|1372327_1373083_-\|ABC-transporter,-Fe3+-siderophore,-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.8446e-98
LR134336.1\|VEF79406.1\|1367363_1369700_-\|P-type-ATPase-metal-cation-transport	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
LR134336.1\|VEF79404.1\|1365800_1366598_-\|NIF3-(NGG1p-interacting-factor-3)-family-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	7.4949e-89
LR134336.1\|VEF79422.1\|1403652_1404444_-\|YlmH-protein	gnl\|CDD\|225185	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown].	3.95644e-110
LR134336.1\|VEF79413.1\|1376035_1376305_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.4531e-50
LR134336.1\|VEF79421.1\|1403389_1403644_-\|cell-division-protein-DivIVA	gnl\|CDD\|377456	pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.	6.08213e-13
LR134336.1\|VEF79416.1\|1378019_1383533_-\|IgA1-protease	gnl\|CDD\|369436	pfam07580, Peptidase_M26_C, M26 IgA1-specific Metallo-endopeptidase C-terminal region. These peptidases, which cleave mammalian IgA, are found in Gram-positive bacteria. Often found associated with pfam00746, they may be attached to the cell wall.	0
LR134336.1\|VEF79405.1\|1366584_1367262_-\|Bcl-2-family-protein	gnl\|CDD\|225258	COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only].	1.92247e-100
LR134336.1\|VEF79407.1\|1369832_1370582_+\|acyltransferase-family-protein	gnl\|CDD\|223282	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism].	3.93432e-43
LR134336.1\|VEF79408.1\|1370624_1371317_-\|esterase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	5.05765e-21
LR134336.1\|VEF79420.1\|1399533_1402326_-\|isoleucyl-tRNA-synthetase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
LR134336.1\|VEF79419.1\|1391052_1399239_-\|Zinc-metalloprotease-zmpC	gnl\|CDD\|369436	pfam07580, Peptidase_M26_C, M26 IgA1-specific Metallo-endopeptidase C-terminal region. These peptidases, which cleave mammalian IgA, are found in Gram-positive bacteria. Often found associated with pfam00746, they may be attached to the cell wall.	0
LR134336.1\|VEF79414.1\|1376597_1377290_-\|phosphoglyceromutase	gnl\|CDD\|184517	PRK14117, gpmA, phosphoglyceromutase; Provisional.	1.16477e-167
LR134336.1\|VEF79412.1\|1374293_1374905_-\|Cad-superfamily-protein	gnl\|CDD\|281580	pfam03596, Cad, Cadmium resistance transporter.	4.98466e-87
LR134336.1\|VEF79409.1\|1371297_1372308_-\|iron(III)-dicitrate-binding-lipoprotein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	7.35197e-47
LR134336.1\|VEF79403.1\|1364680_1365784_-\|oxidoreductase,-DadA-family-protein	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	4.28917e-51

>LR134336.1|VEF79412.1|1374293_1374905_-|Cad-superfamily-protein
MGQTIISAIGVYISTSIDYLIILIILFAQLSQNKQKWHIYTGQYLGTGLLVGASLVAAYVVNFVPEEWMVGLLGLIPIYLGIRFAIVGEGEEEEEEIIERLEQSKANQLFWTVTLLTIASGGDNLGIYIPYFASLDWSQTLVALLVFVIGIIIFCEISRMLSSIPLIFETIEKYERIIVPIVFILLGLYIMYENGTIETFLIV
>LR134336.1|VEF79411.1|1373084_1374131_-|ABC-transporter-Fe3+-siderophore,-permease
MLSKFSGSRRDLQFVLLLGVLLGILGISLFLAVSMGSVAIDLGDTYRIILSRLGFPLEIGEVSKSTLAIVWNMRFPRVLLGLIVGAGLSMCGSVMQSTVNNPIAEPYVLGISAGATLGATLSIILGLKLVISLGAFLGAILATIAVLIIASMQGRMTTSSLILSGTVVNALFLAFSNFIISVGANADSVMTIKFWTMGSLAGTTWSDLVLPTIVVGLAFLFFATQYRVFNAMMMGDEAALTLGIPLRFYWYLYVTMVAVLTAVLVATCGIIGFVGLITPHLARGLVGTNYRRLFPVATLLGALFVIWADVLSRIIIPNAELPIGIFTALVGAPFFIYIVGGRRREVRA
>LR134336.1|VEF79410.1|1372327_1373083_-|ABC-transporter,-Fe3+-siderophore,-ATP-binding-protein
MDLICQDVHFGLGEKKILKGVSLKVEGHQFHTILGPNGSGKTSLLKLLYRQEKADKGLISLDGKPLEHWSLKETAKQMAVVTQFNQLQFDCTVEEIVLLGRTPHLSFLQKEKERDYALVQDALVKVDMLEKKTRLYSSLSGGEKQRVLLARALAQEPTLLLLDEPTNHLDIKYQLDLLAIVKNLKVNVLAVLHDIQLACRYSDYLYLMKEGEILYQGTPKETITPESLQTVYGVQSQVTWTEDQQAMIHYL
>LR134336.1|VEF79409.1|1371297_1372308_-|iron(III)-dicitrate-binding-lipoprotein
MKKTLSILLVTVATLTMAACGNTTTEKATTQSSTETSQKASTETTYPLTVKTYDVKGNEVEQVFDKAPEKVITNNLSTTEILLELGLKDKIAGMLNPDNAVTDKYKDAIATIPQIGDKKTVSQETVLSYEPDAVMGRNMMFSEKSLGTVSTWNENKIPVYTQKASLSTIQQDLGNIVEDVKNLGMIFNVQDKANEYAAQLQAKIDAVKKANPTSQGEKKKALIMVAYNDETFGAYKSALQESLLNQLGYTNVATGTSGLTLENLVSMDPELIIYVTSDRNKKLDANAVELMKANEVLENVPAIKNQKIMTISYDELMDYGPAVIDSLEKINDFINK
>LR134336.1|VEF79408.1|1370624_1371317_-|esterase
MTLSINNEFDWEGIQVKVSLPSTYDPNQTYPAVLLNDGNLDFLSSLSESVILVGLTSKNRLDDYTPWKASALRDGALDFGGQANAYHDHLFGSLLDKLQSLYRLDKNRLAYGGYSLGGLAAVYSIFHFDKVSCIFSICGSFWYPDFTTYCREEKVKNLDCLLYLQNGQTEGAHHTNRLGQAPAYAEQIHTSLQKRYLTGQFVFDPYGHHEQVAERFLAFSNWLSQKWKIE
>LR134336.1|VEF79407.1|1369832_1370582_+|acyltransferase-family-protein
MFYTYLRGLVMLILWSINGNAHYHNTDKIPSRDENYILVAPHRTWWDPVYMAFATKPKQFIFMAKKELFNNRIFGWWIRMCGAFPIDREKPSASAIKYPINVLKKSDRSLIMFPSGSRHSNDVKGGVALIAKMAKVRIMPVTYTGPMTLKGLISRERVDMNFGNPIDISDIKKMNDEGIEMVADRIQAEFQRLDEETKQWHNDQKPNPLWWFVRIPALILAVFVGILTIIFSFIASFIWNPDKKRETLG
>LR134336.1|VEF79406.1|1367363_1369700_-|P-type-ATPase-metal-cation-transport
MDKNKIMGLTQREVKERQAQGLVNDFTASASTSTWQIIKRNVFTLFNALNFVIALALAFVQAWSNLVFFAVICFNAFSGIVTELRAKHMVDKLNLMTKEKVKTIRDGQEVDLDPEELVLGDVIRLSAGEQIPSDALVLEGFAEVNEAMLTGESDLVQKEVDALLLSGSFLASGAVLAQVHHVGADNYASKLMLEAKTVKPINSRIMKSLDKLAGFTGKIIIPFGLALLLEALMLKGLPLKSSVVNSSTALLGMLPKGIALLTITSLLTAVIKLGLKKVLVQEIYSVETLARVDMLCLDKTGTITQGKMQVEAVIPLTEEYGEHAIASILTSYIAHSEDKNPTAQAIRQRFVGEVAYPMLSNLPFSSDRKWGAMELEGLGTVFLGAPEMLLDSEVPEAREALERGSRVLVLALSQEKLDHHKPQKPSDIQALALLEILDPIREGAAETLDYLRSQEVGLKIISGDNPVTVSSIAQKAGFVDYHSYVDCSKITDEELVAMAEETAIFGRVSPHQKKLIIQTLKKAGHTTAMTGDGVNDILALREADCSIVMAEGDPATRQIANLVLLNSDFNDVPEILFEGRRVVNNIAHIAPIFLIKTIYSFLLAVICIASVLLGRSEWILIFPFIPIQITMIDQFVEGFPPFVLTFERNIKPVEPNFLRRSMLRALPSALMIVFSVLFVKIFGASQGWSELEISTLLYYLLGSIGFLSVFRACMPFTLWRVLLIVWSVGGFLATALFPRIQKLLEISTLTGQTLPVYGAMMLVFTVIFILTSRYQARK
>LR134336.1|VEF79405.1|1366584_1367262_-|Bcl-2-family-protein
MISKRLELVASFVTQGAILLDVGSDHAYLPIELVERGQIERAIAGEVVEGPYQSAVKNVEAHGLKKKIQVRLANGLAAFEEVDQVSVITIAGMGGRLIATILEEGLDKLGSVKRLILQPNNREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQMKLSASDLRFGPFLSKEVSPVFIKKWQKEATKLEFALSQIPEKNLKERQVLVDKIQAIKEVLHVSK
>LR134336.1|VEF79404.1|1365800_1366598_-|NIF3-(NGG1p-interacting-factor-3)-family-protein
MLASEVINAYEAFCPQEFSMEGDSRGLQIGTLDKDIQRVMVALDIREETVAEAIEKGVDLIIVKHAPIFRPIKDLVASRPQNQIYIDLIKHDIAVYVSHTNIDIVDNGLNDWFCQMLGIDETTYLQETGPERGIGRIGNVQPQTFGELAKHVKQVFGLDSLRMVHYQESDLKKEISRVAICGGSGQSFYSDALAKGADVFITGDIYYHTAQDMLSDGLLALDPGHYIEILFVEKIAALLTQWKAEKGWTVDILPSQASTNPFHHI
>LR134336.1|VEF79403.1|1364680_1365784_-|oxidoreductase,-DadA-family-protein
MKKVAIIGAGIVGATAAYYLSKESDLEVTVFDHGQGQATKAAAGIISPWFSKRRNKAWYKMARLGADFYVDLLADLEKSGQEIDFYQCSGVFLLKKDESKLEELYELALQRREESPLIGQLAILDQTSANELFPGLQGFDRLLYASGGARVDGQLLVTRLLKASQVKLVKEKVTLTPLASGYQIGEEVFDQVILSTGAWLGDILDPLGYEVDVRPQKGQLRDYQLTQDMESYPVVMPEGEWDLIPFAGGKLSLGATHENDMGFDLTVDETLLQQMEDAALPYYPALAEATIRGERVGIRAYTSDFSPFFGQVPELSGVYAASGLGSSGLTTGPIIGYHLAQLVQDKELTLDPVNYPIANYVKRVKSE
>LR134336.1|VEF79413.1|1376035_1376305_-|30S-ribosomal-protein-S15
MAISKEKKNEIIAQYARHEGDTGSVEVQVAVLTWEINHLNEHIKQHKKDHATYRGLMKKIGRRRNLLAYLRKNDVNRYRELINSLGLRR
>LR134336.1|VEF79414.1|1376597_1377290_-|phosphoglyceromutase
MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDQAYTSVLKRAIKTTNLALEASDQLWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPNMDRDDEHSAHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKRLSDDEIMDVEIPNFPPLVFEFDEKLNVVSEYYLGK
>LR134336.1|VEF79415.1|1377487_1377868_-|Prophage-Lp1-protein-6
MERDRLVRLNWRLGMVAGITLLLGPVLRFLLSYTGAIIYKDPSKVLVVTVTFSLLLTFFKILMIALGTFMLIYFEEDQQLRKLPSILFIIGGVLGFLSATEWIGGFLIIKGAVSFSKFLKEVRGLV
>LR134336.1|VEF79416.1|1378019_1383533_-|IgA1-protease
MKKFFGEKQHRFSLRKLAIGLVSASISSLFFVSIASSGTVFAQENAAVHYKYVTDTELSGQEKDLIVKDIPKIAEDSESTYYLVYRMDEKAQLGQLPNTGGQNSLTSVLTGGALASIGLLIFVVSKKKGKKKALLNVILVTGMGSGLASSVQAIENQLLLQYNQEYQLSQGDSLPLPRALSGYTYLGYIKQDKEINQQETAARDQKLDYTVQPHFQANEGGQKAGDEQKAPSSTSPADKTIPSQDLSNKKPSGIASVDPQDEVLAGRVNKPELLYKDQEIVTKLDVSEVVQENPELTEGTIHVKQEGRAGKKIELVRIFTVENQEISREVLSTKVEEVLPRIVEKGTKKAVAASEAPQSATKGEPETQAPLPEYTGEQAGAVVAPETAEKPEYTGTQAGAVVEPEQVAPLPEYQGTQAGAVVAPETSEKPEYTDTQSGAIVEPEQVAPLPEYQGTQAGAIVDPEIAEKPEYTDTQAGAIVEPEQVAPQAEYKGTQAGAIVEPEIQSSLPEYKGTQAGAIVEPEQVAPLPEYTGNTEQVKPETPTEKPKEKDPEKTLELRNVSDLELYSQTNGTYKQHVSLDSVPKNTETYFVKVKSSSFKDVYLPVASITAETKDGQPVYKITAKAEKLQQELENKYVDNFTFYLAKKATEETTTFTSFSNLVKAINKNLSGTYHLAASLNANEVELGPDERSYIKGAFTGQLIGEKDGKQYAIYNLKKPLFETLSSATVEKLSLKNVSISGKDDIGALSYEAQNGTKIKQVHVDGVLAGERGIGGLLAKAEQSSITESSFKGRIINTYETTAAYNIGGLVGHLTGDKALLTKSKATVAISSNTNSSDQTVGGLAGLVDQDAQIQDSYAEGDINNAKHFGRVAGVAGYLWDRKTNEEQHAGRLTNVLSDVNVTNGNAITGYHYNGMKVKDTFSSKANRVYNVTLVKDEVVSKESFEERGTMLDASQIESKKAAINPLTLPTVEPLSTSGKKDSDFSKVAHYQSKRALAYKNIEKLLPFYNKATIVKYGNLVNENSLLYQKELLSAVMMKDNQVITDIVSNKQTANKLLLHYKDHSSEKLDLKYQDDFAKLAEYSLGDTGLLYTPNQFLYDQSSIIKQVLPDLQKVDYHSEAIRKTLGISPNVKQTELYLEDQFAKTKQHLEDSLKKLLSADAGLAGDNPVTKGYLVDKIKHNKEALLLGMAYLERWYNFSYGQVNVKDLVLYHLDFFGKGNASPLDALIELGKSGFNNLLAKNNVDTYGISLASHHGTTDLFSTLEHYRKVFLPKTSNNDWFKSETKAYIVEEKSTIEEVKTKQGQTGSKYSIGVYDRITSATWKYRNMVLPLLTLPERSVFVISTMSSLGFGAYDRYRNSEHKAGKALNDFVEENARETAKRQRDHYDYWYRILDNEGREKLYRTILLYDAYKFGDDTTSGKATVEAKFDSTNSAMKNFFGPVGNKVVHNQHGAYATGDGVYYMSYRMLDKDGAITYTHEMTHDSDQDIYLGGYGRRSGLGPEFFAKGLLQAPDQPSDATITINSILKHSKSDSAEGSRLQVLDPTERFQNAADLQSYVHNMFDLIYMLEYLEGQSIVNKLNVYQKMAALRKIENKYVKDPADGNEVYATNVVKELTEAEAQNLNSFESLIDHNILSAREYQTGDYERNGYYTIKLFAPIFSALSSEKGTPGDLMGRRIAYELLAAKGFKDGMVPYISNQYEEAAKQKGQTINLYGKERGLVTDKLVLDKVFEGKYASWAAFKKAMYKERVDQFENLKQVTFKDPTKPWPSYGTKTINQVSELQALMDQAVLKDAVSPRWSNYNPEYDSAVHKLKRAIFKAYLDQTNDFRTSIFKK
>LR134336.1|VEF79417.1|1383766_1384147_-|integral-membrane-protein
MKTKALARVNAIFGLISGIVLLLAPLVMFMIAVGAAAATEDSDATVGILTIFSIILALVKIAVLVLGIVSIVYYKDDERVTPAPSVLFIVGGSVGLIPFLGWVGGILTIIGGSLYFGLLKKFEIQE
>LR134336.1|VEF79418.1|1384376_1390802_-|zinc-metalloproteinase
MKRSYLGEKHQRFSLRKVSVGLVSALVGVFYLFSGGGSLASVAASEQTPSVTKQIHYKYVTESELTDQEKQLVVKELPQFAEETDDTYYLIYRPTRQLPATGHSQLISSIAAGAGIVLLVVAIKLGRDDRKKLASFMLLTSLGSQLIAPTSLALTNQMLADYNQELTVQVGETLQSPLTIEGYQYVGYLKSQKEVNSPVDGKKELNHSAPIDTPVQTSNGSQAQEEYRSQKPSDAPVFEQPELKVESKDTSRTEIIPFQVEEVEAADLPQGQTEVIQAGKNGSRTIVTRSYILNGQVIHTEEVSNQVTTEPTSEIRKVGSKVLAPTKPSPGESVSEKPTDAPINEVPSLKVEEKDVTTTVAEPYTRERVESDSLPVGQTKITQAGQDGVRTIVTRQYMVNGKVERSQELSNEVTTPAVSEIVTVGTGPVSEKPTDAPVNEVPSLEVEEKDVTTTVAEPYTRERVESDSLPVGQTKITQAGQDGVRTIVTRQYIVDGKVERSQEISNEVTTPAVSEIVTVGTAPVSEKPTDAPVNEVPSLNVEEKDVTTTVAEPYPTKEVESADLPLGQREVSQAGQDGVRTIVTRQYLVDGKVENTEEISNTITKEAVPQIIKVGTKPISTNVDHAPVEPEKGTLDLEPLHQLVEEADSIQKTHQYFNDTTADQESYKQAVANAQALFEASHASQEQVDSLKKALETAKNNLDGQPVDKKTLGVEFDMKDVTQSTVAYQYADEQAKLRYRRALDQAKLVLDNPLANQALVDQVRTDLEAARQALDGVKRKPTLSLVRVEKEEDKRQVSLSYHLTDATASYQSAKVQLYKGETLIKEVDLVDLTQKLTLDDLDYYTPYTLKTVMKYDLGQGEQTSIEDQRLVQLDYKKVEIKDIDRIELYGKDGSRYRRYLSLSEVPSDLDNYYVRIQSDKFKDMLLPVTKITDKGNAYSVTVSANQLVEGEGDHYRPDYSFELPKTPLSQEGVYTSFKALVEAMKSNPIGNFTLGADVSADELQLEQSATSYVPEEFSGSLTSRVDGKDYTIYNLAKPLFATLKNATIQQLTLKSAAVTGKDSIGALASNAQNATITDVSVSGSLSGNKHIGGLVGVAQNTKLTNVAFKGSITSTQDGGQEYNIGGLVGNFHGNQSLAQKSQADVSIQVTGRNGDQRVGGLIGRLQNGARLETSYVSGSIQNGGHSGQVGGAIGSTWNNGQVRNILTSVKVQNGHAMTGDPYPEASVRDSYVLEGTTANRKDERFVRSISEADAQAKRQSFGITSNLTDQEPLQQAYQHQTDYSRVRGAQESRKQAYENVEKLLPFYNKDFIVHTANQLAEDDKLNKVALLDVVPMKDETLITDVNSHKGEINRLMLHYADKTIAYLDLTYKGDFANGQIAEYSIADKNLLYTPETFLSDYQSIKASVLEELKAVTYDSTAVRKVLGIGETASLDDLYLEKAFEQTKAELGQELLKVLSVDKSINTLGPAVADAISQKILQNKEAFMLGLTYLNRWYNVNYGTFNTKDLNAYKFDFFGNQAASTLDTIIALGNSGMGNLRAQNNFNAYRQSLAKEKGKGDLFAYLESLRELFLPNKTNSEWFKENTKAYIVEARSSLPEIQAKQDNADRKSKYTIKVYDRLTQGDWGFKQMVLQLLTLPERDVYIISNMSTIAFGSFGGYRKEGGRVLSGEELHRHVEKLVDQSAEWQRNHYDMWYNILSPNRKDTLFRRVIVTDGFFLYNDKGQQYWAPRNDKTSVAMYNFFGPAGKYHGDNGLGAFANGYEVFYVYDQMLGASGTMVYTHEMTHNSDGSIYFEGHGRREGEGPESFATGMLESVTNVSEKGLVLNSFYQGDKDSTTRYHTYDPVARFSSADALRDYMHGVFDVLNLLDYVEGDIVTGVLTDQQKMKWYRKAENYNFEKTSYGKQAHADDRIVPITAEEAAKLKSVDDLVDHNIIGRRDGWDRASFGRNGYYVINMFASFYAALDNPTGAPGGLMFRRRAYELLGDKGYQQGFVPYVSGQYAGQALKEGNKTYSIWNRGDVGVVGDDLVFKNLYGSQYESWKDLKKAMLNERYNKAQNFLRPITIEFEAGKLDSKRQITISSYEELQDYMYLAVLADASAKNIDRALSDSSKSSVAQLKYRIFNAYLRATDDFRQSIFER
>LR134336.1|VEF79419.1|1391052_1399239_-|Zinc-metalloprotease-zmpC
MKHQFYGEKRQRFSFRKLSVGLVSATIGSFFLNGQMAGGLTSVKAAEIQSQQSAQVKYHYVVESELTEAEKSALIREIPKHVEDASETYYLVYRPTTQGDSSGVLPKTGHSGLWESTFTAMGLALLVLVVVRGRNGKRYLSSILLVTGMGSILLSPTVLAVTNIELAAYNQSLNLGLGDALPAPLKIDGYDYIGYLKNEEQNDSHLTPSALKENSTLDLEKEKGSELKPSETNLDMKEIVSDKGDALTEEEREAIAAKERESARLSPVYDLPELKISEQESVQELPYQTKYQYTDELAQGQSKVIQSGVRGQRTVVTRHFRKDQEIVKSEMISDQVTLEPVSEIILVGTAPTNSIPKENPVHEVPELAEYGTTPETAPVHEIPELTEYGTTPEIAPVHEVPELTEYGTSPETAPVHEVSELAEYGTNPDTAPVHEVPELTEYGTSPETAPVHEVSELAEYGTNPDTAPVHEVPELKEYGTSPETSPVREVPELTEYGTSPETSPVHEVPELTEYGTSPETSPVHEVPELTEYGTNLDTAPIHENSELELTTNDEVRIEKIDFSIDEQYTDEIPEGSRQIATPGVQGERTIKTRVYSSNGQEIDRQELSNEETLEPVTQIVKVGTAKPTMVPNEAPKAEALPEYPLTYTDEIRVEKIAFNIEEQTTDELVQDARQIATPGVQGERTIKTRVYSSNGQEIDRQELSNEETLAPVTQIVKVGTAKPTMVPSDAPKADALPEYPLTYTDETRVEKINFSIREEETDELVRDARQITTPGVQGERTIKTRVYSSNGQEVDRQELSNEETLAPVTQIVKVGTAKPTMVPNDAPKADALPEYPLTYTDETRVEKINFSIREEETDELVQDARQIITPGVQGERTIKTRVYSSNGQVVDRQELANEETLAPVTQIVKVGTAKPTMVPSEAPKAETLPEYPLTYADETRVEKINFTIREEETDELVRDARQIATPGVQGERTIKTRVYSSNGQVVDRQELSNEETLAPVTQIVKVGTAKPTMVPSDAPKADALPEYPLTYTDETRVEKINFSIREEETDELVRDARQITTPGVQGERTIKTRVYSSNGQEVDRQELSNEETLAPVTQIVKVGTAKPTMVPNDAPKADALPKYPLTYTDETRVEKINFTIREEETDELVRDARQITTPGVQGERTIKTRVYSSNGQEVDRQELSNEETLAPVTQIVKVGTAKPTMVPNEAPKADALEEFDLISLHNLLAEANQIKAQARYFNDSQSHQANYDAALTAGQAILSQSQASQAEVNQLVEQINQAKAQLSGPEVVKTALQTEYDLNPTVKTSVKYKNADSEKQTAYTDELTKAEGVLNNQTATQVQVNQVLASLTAAKEALNGVPKVKLTVSILSLTENVDDKSVTVQYRLEDQTQSFRSATAELYQGDQLIRTLPITNFAGSLKIGDLDYYTGYTLKTKLTYELDNGSFTEFETDSRNFELEYKKIAFRDIDSVEFYHKENDQYKRFVSMNSMPTDLSTYFVKIKSSESKEILLPVHSISEAEKDGKAVYKVNVTLPELVQESETGYKSGHDFYISKAVPSQQNVYTSFAGLVEAMKRNMAGNYVLGADLDASEVNLAPADYVYLKGNFTGSLTGSQNGKQYAIYNLAKPLFENLKSGSVISNIDFKDVNIEGTYDSAALARNAENARITDVSVQGRVSVVGNASNVAGLVVNGTNTKITNSSFTGTILSNSQHIKAYNVGGLVASLKGGESLLSQSKADVTIISGARSNEQRIGGLVGRLENNARITKSYVTGKVYNLTTNGQIGGVVGSNYFNGLVDNVISNVSGTNVYSISGDQGYKNDRITQAYKVAKSETLKNDQFVTSTITQEEMEEKLTAMNITTSLDDTNLNMRFVDYGEVNNAQFDRGYSYANMEKLLPFYNKETIVSFANKIPKEHKLNKEYLLDVVPMKGDQIITDIHSNKTAINRLMLHYMDNTIDYLEISYQGDFVNRGIAEYRMKGLDLLYTPEAFVSDYTSILNQVLPELNKVVLDSPAMRTALGVAADTSLDELYLDTAFTQVKSKLSGELRKVLAMDKAINTEGEVVKDYLVKKILADKEAFLLGLTYLNRWYNINYDTFNVKDLSAYKMDFYGKNDVSVLDTIIALGKSGLENLKAKNNYTAYDNSLSEATGKRGLFNYLEGYRQLFLPYKTNNEWLKTNTKAYIVEAKSDVAEARQLQDAAEGKSKYSVGVYDKITADNWEYKGMLLPLLTMTEKGVYAISNMSTISMGAYDRYRLDANNRVRTDAELVEYVEDRVRKTAEYQRDHYDFWYKILSPESKDKLFRSVLVYDGFFLTDKAGQSYWAPANDKKSQAMQEFFGPAGKWYPSKGYNAYATGSVTHFDRARLLEDYGNSVYTHEMTHNSDGAIYFEGYGRREGLGAELYARGLLQSSPSADEPTITLNTLFKVDKDSKTRMHTYNFKERVQNAADLQHYVHGMFDMIYTLDYLEGTSMLKQSDAAKLQWFRKMENYYITDKYGKETHAGNQTRSFTAEEIKQLKTFDSLIDNDVITRRENKESGKYGRNGYLSLSLFSPIYSALSNPNGAPGDVMFRRTAYELLAAKGYHDGFVPYVSGQYSQEAFDEGKKTWDGWSGRDVGLVTDQKVLENVFKGEYTSWAAFKKAMYKERIDQLTKLKPITIEYELKNPNSTKKVTIRSYAEMQQLMDAAVAEDVRNITNATSRVEASWVNLLKKKIYNAYLRETDDFRQSIFKK
>LR134336.1|VEF79420.1|1399533_1402326_-|isoleucyl-tRNA-synthetase
MKLKETLNLGKTDFPMRAGLPTKEPVWQKEWEEAKLYQRRQELNQGKPHFTLHDGPPYANGNIHVGHAMNKISKDIIVRSKSMSGFYAPYIPGWDTHGLPIEQVLAKQGVKRKEMDLVEYLKLCREYALSQVDKQREDFKRLGVSGDWENPYVTLTPDYEAAQIRVFGEMAKKGYIYRGAKPVYWSWSSESALAEAEIEYHDLLSTSLYYANRVKDGKGVLDADTYIVVWTTTPFTITASRGLTVGADIDYVVVQPAGESRKFVVASELLNSLSEKFGWADVQVLATYRGQELNHIVTVHPWDTAVDELVILGDHVTTDSGTGIVHTAPGFGEDDYNVGVANGLEVAVTVNERGIMMENAGPEFAGQFYDKVVPTVIEKLGDLLLAQEEISHSYPFDWRTKKPIIWRAVPQWFASVSKFRQEILDEIEKVKFHSEWGKIRLYNMIRDRGDWVISRQRAWGVPLPIFYAEDGTPIMTAETIEHVAQLFEEHGSIIWWERDAKDLLPEGFTHPGSPNGEFKKETDIMDVWFDSGSSWNGVVVNRPELKYPADLYLEGSDQYRGWFNSSLITSVANHGVAPYKQILSQGFALDGKGEKMSKSLGNTIAPSDVEKQFGAEILRLWVTSVDSSNDVRISMDILSQVSETYRKIRNTLRFLIANTSDFNPAQDAVAYDELRSVDKYMTIRFNQLVKTIRDAYANFEFLTIYKALVNFINVDLSAFYLDFAKDVVYIEGAKSLERRQMQTVFYDILVKITKLLTPILPHTAEEIWSYLEFEAEEFVQLSELPEAETFANQEEILDTWSAFMDFRGQAQKALEEARNAKVIGKSLEAHLTVYPNEVVKTLLGAVDSNVAQLLIVSELTIAEGTAPEGAVSFEDVAFTVERAAGEVCDRCRRIDPTTAERSYHAVICDHCASIVEENFADAVAEGFEAK
>LR134336.1|VEF79421.1|1403389_1403644_-|cell-division-protein-DivIVA
MSITPQEISDKAFSRTFRGYNQEEVDLFLDKIYFELEEMIRYKDETELYIKKLEERLSYYTNDIPKRTVTSEQEPEAINDSIFY
>LR134336.1|VEF79422.1|1403652_1404444_-|YlmH-protein
MTVNRAIYQHFSQDDIPFIDKGLEWIKRVEDTYAPVLTPFINPHQEQILRVLAGTYGLGCQSSGDFLPTESVRVLLYPAYFEPEISDFEMALLEICYPSKFEQLSHGKILGTIINQLGIDRKLFGDILVDEKRAQIFVNRDFIPLFQDGIRKIGRLPVSLEECPFTDRILSKIDYREREILVSSFRLDALLSSALKLSRNQTSQLIEKKSVQVNYHVVEKSDYQVAVGDLISVRKFGRLKVVKDNGQTKKDKKKLTVRLLLSK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134336_2	2.3\|1375369\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375369-1375398	30	LR134336.1	1894222-1894251	0	1.0

1. spacer 2.3|1375369|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to position: 1894222-1894251, mismatch: 0, identity: 1.0

tgggtgagttgcgtggaaaacaaaaatcag	CRISPR spacer
tgggtgagttgcgtggaaaacaaaaatcag	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134336_2	2.5\|1375499\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375499-1375528	30	KY629621	Streptococcus virus MS1, complete genome	47870-47899	0	1.0
LR134336_2	2.5\|1375499\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375499-1375528	30	NC_007581	Clostridium phage c-st, complete genome	43069-43098	6	0.8
LR134336_2	2.5\|1375499\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375499-1375528	30	AP008983	Clostridium phage c-st genomic DNA, complete genome	43069-43098	6	0.8
LR134336_2	2.1\|1375239\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375239-1375268	30	NZ_CP046705	Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence	253694-253723	8	0.733
LR134336_2	2.2\|1375304\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375304-1375333	30	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	427802-427831	8	0.733
LR134336_2	2.4\|1375434\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375434-1375463	30	MK448839	Streptococcus phage Javan102, complete genome	30519-30548	8	0.733
LR134336_2	2.4\|1375434\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375434-1375463	30	MK448667	Streptococcus phage Javan105, complete genome	30519-30548	8	0.733
LR134336_2	2.4\|1375434\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375434-1375463	30	MK448843	Streptococcus phage Javan112, complete genome	30518-30547	8	0.733
LR134336_2	2.4\|1375434\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375434-1375463	30	MK448841	Streptococcus phage Javan108, complete genome	30519-30548	8	0.733
LR134336_2	2.5\|1375499\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375499-1375528	30	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	694124-694153	9	0.7
LR134336_2	2.7\|1375629\|30\|LR134336\|PILER-CR,CRISPRCasFinder,CRT	1375629-1375658	30	MN693601	Marine virus AFVG_25M543, complete genome	50027-50056	9	0.7

1. spacer 2.5|1375499|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to KY629621 (Streptococcus virus MS1, complete genome) position: , mismatch: 0, identity: 1.0

aaaagatctataatttgtctatattttcct	CRISPR spacer
aaaagatctataatttgtctatattttcct	Protospacer
******************************

2. spacer 2.5|1375499|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 6, identity: 0.8

aaaagatctataatttgtctatattttcct	CRISPR spacer
ttaatatctataatttgtctatacttatct	Protospacer
  ** ******************.** .**

3. spacer 2.5|1375499|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 6, identity: 0.8

aaaagatctataatttgtctatattttcct	CRISPR spacer
ttaatatctataatttgtctatacttatct	Protospacer
  ** ******************.** .**

4. spacer 2.1|1375239|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046705 (Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence) position: , mismatch: 8, identity: 0.733

ctcaatcaatggtactcgttaaaggtgctg	CRISPR spacer
ttacagatatggtactggttaaaggtgcta	Protospacer
.*  *   ******** ************.

5. spacer 2.2|1375304|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

aaatattcgtaaatacttactattacgaat	CRISPR spacer
ctatcatcataaatacttactattacgtca	Protospacer
  **  **.******************

6. spacer 2.4|1375434|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to MK448839 (Streptococcus phage Javan102, complete genome) position: , mismatch: 8, identity: 0.733

aagtgctttataacatctttggaagattga	CRISPR spacer
ttttcatttataacttctttggaagattcg	Protospacer
   *  ******** ************* .

7. spacer 2.4|1375434|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to MK448667 (Streptococcus phage Javan105, complete genome) position: , mismatch: 8, identity: 0.733

aagtgctttataacatctttggaagattga	CRISPR spacer
ttttcatttataacttctttggaagattcg	Protospacer
   *  ******** ************* .

8. spacer 2.4|1375434|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to MK448843 (Streptococcus phage Javan112, complete genome) position: , mismatch: 8, identity: 0.733

aagtgctttataacatctttggaagattga	CRISPR spacer
ttttcatttataacttctttggaagattcg	Protospacer
   *  ******** ************* .

9. spacer 2.4|1375434|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to MK448841 (Streptococcus phage Javan108, complete genome) position: , mismatch: 8, identity: 0.733

aagtgctttataacatctttggaagattga	CRISPR spacer
ttttcatttataacttctttggaagattcg	Protospacer
   *  ******** ************* .

10. spacer 2.5|1375499|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.7

aaaagatctataatttgtctatattttcct	CRISPR spacer
cgtgttgctttaatttgtctatattttctt	Protospacer
 . .   ** ******************.*

11. spacer 2.7|1375629|30|LR134336|PILER-CR,CRISPRCasFinder,CRT matches to MN693601 (Marine virus AFVG_25M543, complete genome) position: , mismatch: 9, identity: 0.7

tcaatgcgcttcgaggtactgagaatgatt	CRISPR spacer
tcaatgcgcttcgaggtagtgtccgccctg	Protospacer
****************** **   ..  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

33059 : 44295

Synechococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF78149.1\|33059_35213_+	competence factor transporting ATP-binding protein/permease ComA	W8CYL7	Bacillus_phage	2.3e-44	28.1
VEF78150.1\|35225_36575_+	competence factor transport protein ComB	NA	NA	NA	NA
VEF78151.1\|36742_37450_+	phosphoribosylaminoimidazole-succinocarboxamide synthetase	A0A1D8KNF0	Synechococcus_phage	1.0e-41	38.8
VEF78152.1\|37506_41232_+	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)	A6N228	Microbacterium_phage	5.6e-38	26.0
VEF78153.1\|41244_42687_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.3e-54	34.9
VEF78154.1\|42730_43753_+	phosphoribosylaminoimidazole synthetase	R9TMC7	Synechococcus_phage	1.5e-62	42.4
VEF78155.1\|43749_44295_+	5'-phosphoribosylglycinamide transformylase 1	M4QRX9	Synechococcus_phage	2.0e-24	35.9

DBSCAN-SWA_2

306892 : 357159

Lactobacillus_phage(28.57%)

tRNA,holin,protease,integrase

attL 314994:315009|attR 324304:324319

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF78379.1\|306892_308317_+\|holin	choline binding protein J	M4QQM4	Ostreococcus_lucimarinus_virus	1.0e-40	29.6
VEF78380.1\|308328_309018_+	response regulator	NA	NA	NA	NA
VEF78381.1\|309117_310002_+\|holin	choline binding protein J	NA	NA	NA	NA
VEF78382.1\|310019_311039_+\|holin	choline-binding protein Cbp9	NA	NA	NA	NA
VEF78383.1\|311156_312035_+	mevalonate kinase	NA	NA	NA	NA
VEF78384.1\|312016_312970_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA
VEF78385.1\|312956_313964_+	phosphomevalonate kinase	NA	NA	NA	NA
VEF78386.1\|313947_314949_+	isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2	NA	NA	NA	NA
314994:315009	attL	NA	NA	NA	NA
VEF78387.1\|315087_316218_-\|integrase	phage integrase family site specific recombinase	D6PSS4	Lactobacillus_phage	9.6e-42	31.3
VEF78388.1\|316270_316612_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEF78389.1\|316676_317912_-	replication protein RepA	S5TMW6	Circoviridae_11_LDMD-2013	7.6e-16	27.8
VEF78390.1\|318056_318674_-	Uncharacterised protein	NA	NA	NA	NA
VEF78391.1\|318670_319840_-	FtsK/SpoIIIE family protein	NA	NA	NA	NA
VEF78392.1\|319843_320203_-	Uncharacterised protein	NA	NA	NA	NA
VEF78393.1\|320432_320972_+	Uncharacterised protein	NA	NA	NA	NA
VEF78394.1\|320997_321345_-	XRE family transcriptional regulator	NA	NA	NA	NA
VEF78395.1\|321552_324072_+	transposon related peptidoglycan linked protein (LPXTG motif)	NA	NA	NA	NA
VEF78396.1\|324425_325124_+	transporter	NA	NA	NA	NA
324304:324319	attR	NA	NA	NA	NA
VEF78397.1\|325120_326119_+	signal transduction histidine kinase	NA	NA	NA	NA
VEF78398.1\|326129_326762_+	response regulator	NA	NA	NA	NA
VEF78399.1\|326762_327419_+	DNA alkylation repair enzyme	NA	NA	NA	NA
VEF78400.1\|327509_328793_+	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	NA	NA	NA	NA
VEF78401.1\|328840_331210_-	recombinase D	A0A0K2FLP8	Brevibacillus_phage	6.9e-58	27.9
VEF78402.1\|331339_331954_-	signal peptidase I	NA	NA	NA	NA
VEF78403.1\|331957_332839_-	ribonuclease HIII	NA	NA	NA	NA
VEF78404.1\|332925_333228_+\|tRNA	seryl-tRNA synthetase	NA	NA	NA	NA
VEF78405.1\|333224_333773_+	colicin V production protein superfamily protein	NA	NA	NA	NA
VEF78406.1\|333873_336210_+	mismatch repair ATPase (MutS family)	Q94M10	Lactobacillus_phage	5.1e-21	49.1
VEF78407.1\|336556_337879_+	Na+/alanine symporter	NA	NA	NA	NA
VEF78408.1\|338009_338558_+	macrophage infectivity potentiator protein	NA	NA	NA	NA
VEF78409.1\|338668_339568_+	exfoliative toxin	NA	NA	NA	NA
VEF78410.1\|339591_340866_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.0e-92	48.9
VEF78411.1\|341079_341451_-	ManO	NA	NA	NA	NA
VEF78412.1\|341453_342818_-	aspartate kinase	NA	NA	NA	NA
VEF78413.1\|343100_343886_+	enoyl-CoA hydratase	NA	NA	NA	NA
VEF78414.1\|343976_344411_+	MarR family transcriptional regulator	NA	NA	NA	NA
VEF78415.1\|344410_345385_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA
VEF78416.1\|345442_345667_+	acyl carrier protein	NA	NA	NA	NA
VEF78417.1\|345784_346759_+	putative enoyl-(acyl-carrier-protein) reductase II	NA	NA	NA	NA
VEF78418.1\|346751_347672_+	ACP S-malonyltransferase	NA	NA	NA	NA
VEF78419.1\|347717_348449_+	3-oxoacyl-ACP reductase	W8CYX9	Bacillus_phage	2.0e-08	40.9
VEF78420.1\|348477_349713_+	3-oxoacyl-(acyl carrier protein) synthase II	NA	NA	NA	NA
VEF78421.1\|349715_350204_+	AccB acetyl-CoA carboxylase, biotin carboxyl carrier protein	NA	NA	NA	NA
VEF78422.1\|350200_350623_+	(3R)-hydroxymyristoyl-ACP dehydratase	NA	NA	NA	NA
VEF78423.1\|350634_352002_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
VEF78424.1\|352037_352904_+	acetyl-CoA carboxylase beta subunit	NA	NA	NA	NA
VEF78425.1\|352900_353668_+	acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit	NA	NA	NA	NA
VEF78426.1\|353814_354516_+\|protease	CAAX amino terminal membrane protease family protein	NA	NA	NA	NA
VEF78427.1\|354563_354986_-	transcription antitermination protein NusB	NA	NA	NA	NA
VEF78428.1\|354978_355368_-	general stress protein, Gls24 family	NA	NA	NA	NA
VEF78429.1\|355389_355950_-	Translation elongation factor P	NA	NA	NA	NA
VEF78430.1\|356031_357159_-\|protease	band 7 domain superfamily protein; membrane protease	NA	NA	NA	NA

DBSCAN-SWA_3

629805 : 637056

Streptococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF78678.1\|629805_630300_+	acetyltransferase, GNAT family protein	M1PSC3	Streptococcus_phage	5.5e-42	52.8
VEF78679.1\|630296_630812_+	methylated-DNA-[protein]-cysteineS- methyltransferase	M1PFU9	Streptococcus_phage	4.5e-39	46.9
VEF78680.1\|630824_631181_+	ArshC family protein	M1PLC0	Streptococcus_phage	1.3e-32	55.6
VEF78681.1\|631337_632138_+	aspartate/glutamate ABC transporter permease	NA	NA	NA	NA
VEF78682.1\|632137_632881_+	aspartate/glutamate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.0e-28	39.6
VEF78683.1\|632958_633183_+	membrane associated protein	NA	NA	NA	NA
VEF78684.1\|633248_634160_+	thioredoxin reductase	G3MA85	Bacillus_virus	4.5e-90	50.8
VEF78685.1\|634196_634925_-	TrmH family RNA methyltransferase group 3	NA	NA	NA	NA
VEF78686.1\|634969_635581_-	peptide deformylase	E3SLL2	Synechococcus_phage	3.8e-16	43.2
VEF78687.1\|635736_637056_+	poly-gamma-glutamate biosynthesis protein	A0A0N9SJ77	Staphylococcus_phage	5.2e-31	27.7

DBSCAN-SWA_4

690754 : 699175

Streptococcus_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF78747.1\|690754_691663_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	4.0e-06	27.0
VEF78748.1\|691659_692127_+	signal peptidase II (lipoprotein signal peptidase)	NA	NA	NA	NA
VEF78749.1\|692110_693010_+	23S rluA family pseudouridine synthase	NA	NA	NA	NA
VEF78750.1\|693111_694221_+	gamma-glutamyl kinase	A0A1X9I5D0	Streptococcus_phage	2.6e-116	59.5
VEF78751.1\|694230_695493_+	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	3.1e-142	65.7
VEF78752.1\|695496_696294_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	8.5e-61	52.1
VEF78753.1\|696414_697053_+	thymidylate kinase	M1PSC7	Streptococcus_phage	1.2e-76	68.1
VEF78754.1\|697049_697940_+	DNA polymerase III, delta' subunit	M1NSC1	Streptococcus_phage	1.3e-73	51.7
VEF78755.1\|697976_698294_+	DNA replication intiation control protein YabA	M1PFV3	Streptococcus_phage	3.8e-28	60.0
VEF78756.1\|698296_699175_+	tetrapyrrole methylase	M1PLC5	Streptococcus_phage	1.3e-115	75.4

DBSCAN-SWA_5

1129057 : 1185707

Staphylococcus_phage(12.5%)

tRNA,integrase,transposase,holin

attL 1122907:1122923|attR 1181160:1181176

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1122907:1122923	attL	NA	NA	NA	NA
VEF79181.1\|1129057_1129591_+	DNA topology modulation protein	A0A097BYE2	Leuconostoc_phage	3.2e-27	38.2
VEF79182.1\|1129669_1129960_+\|transposase	transposase fragment	A0A0N7GFG6	Staphylococcus_phage	7.0e-21	52.0
VEF79183.1\|1130118_1130310_+\|integrase	integrase core domain protein	NA	NA	NA	NA
VEF79184.1\|1130296_1130758_+\|integrase	integrase	A0A0N9SIX5	Staphylococcus_phage	3.3e-33	64.5
VEF79185.1\|1131086_1131551_+\|transposase	IS200 family transposase	A0A1P8BMC0	Lactococcus_phage	2.0e-17	37.6
VEF79186.1\|1132020_1132731_-	RelA/SpoT domain-containing protein	NA	NA	NA	NA
VEF79187.1\|1132730_1133843_-	chromosome partitioning protein parA	Q7M293	Enterobacteria_phage	8.6e-27	32.6
VEF79188.1\|1133880_1135878_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SEZ7	Hokovirus	1.3e-81	30.0
VEF79189.1\|1136013_1137273_-	macrolide ABC transporter permease	NA	NA	NA	NA
VEF79190.1\|1137274_1137973_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-38	44.0
VEF79191.1\|1137956_1139141_-	efflux transporter	NA	NA	NA	NA
VEF79192.1\|1139407_1140754_+	glutathione-disulfide reductase	NA	NA	NA	NA
VEF79193.1\|1140897_1141434_+	BioY family protein	NA	NA	NA	NA
VEF79194.1\|1141520_1145930_-	putative collagen adhesin	NA	NA	NA	NA
VEF79195.1\|1146507_1147065_+	TetR family transcriptional regulator	NA	NA	NA	NA
VEF79196.1\|1147098_1147317_-\|tRNA	seryl-tRNA synthetase family protein	NA	NA	NA	NA
VEF79197.1\|1147420_1147741_+	Uncharacterised protein	NA	NA	NA	NA
VEF79198.1\|1147768_1148107_-	ATP cone domain-containing protein	NA	NA	NA	NA
VEF79199.1\|1148118_1148841_-\|tRNA	tRNA (guanine-N(1)-)-methyltransferase	NA	NA	NA	NA
VEF79200.1\|1148827_1149346_-	16S_rRNA processing protein RimM	NA	NA	NA	NA
VEF79201.1\|1149419_1149971_-	Uncharacterised protein	NA	NA	NA	NA
VEF79202.1\|1149960_1150305_-	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA	NA	NA	NA
VEF79203.1\|1150347_1150587_-	KH domain-containing protein	NA	NA	NA	NA
VEF79204.1\|1150606_1150879_-	30S ribosomal protein S16	NA	NA	NA	NA
VEF79205.1\|1151096_1151903_+	peptidyl-prolyl cis-trans isomerase	A0A1V0SCU1	Indivirus	2.0e-17	32.9
VEF79206.1\|1151930_1152170_+	Uncharacterised protein	NA	NA	NA	NA
VEF79207.1\|1152212_1153754_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	1.1e-53	28.4
VEF79208.1\|1153755_1154235_-	VanZ superfamily protein	NA	NA	NA	NA
VEF79209.1\|1154236_1155322_-	ribosomal RNA large subunit methyltransferase N	NA	NA	NA	NA
VEF79210.1\|1155342_1155873_-	transcriptional regulator	NA	NA	NA	NA
VEF79211.1\|1156028_1156634_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.7e-61	56.7
VEF79212.1\|1156703_1157741_-	DNA polymerase III subunit delta	NA	NA	NA	NA
VEF79213.1\|1157773_1158709_-	dihydroorotate dehydrogenase 1A	A0A1V0SH91	Hokovirus	7.9e-66	44.5
VEF79214.1\|1158914_1160261_+	glutamate dehydrogenase	NA	NA	NA	NA
VEF79215.1\|1160292_1160778_+	MarR family transcriptional regulator	NA	NA	NA	NA
VEF79216.1\|1160938_1161307_-	Uncharacterised protein	NA	NA	NA	NA
VEF79217.1\|1161369_1162272_-	metallopeptidase	NA	NA	NA	NA
VEF79218.1\|1162525_1166110_-	glutamate dehydrogenase	NA	NA	NA	NA
VEF79219.1\|1166369_1166738_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
VEF79220.1\|1166812_1167313_-	50S ribosomal protein L10	NA	NA	NA	NA
VEF79221.1\|1167548_1168808_-	chlorohydrolase	NA	NA	NA	NA
VEF79222.1\|1168907_1170656_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	4.8e-48	29.1
VEF79223.1\|1170657_1172382_-	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	4.1e-44	27.7
VEF79224.1\|1172441_1173380_-	bifunctional methionine sulfoxide reductase	NA	NA	NA	NA
VEF79225.1\|1173638_1174508_-	N-ethylammeline chlorohydrolase	NA	NA	NA	NA
VEF79226.1\|1174509_1175796_-	homoserine dehydrogenase	NA	NA	NA	NA
VEF79227.1\|1175942_1176683_-	adaptor protein	NA	NA	NA	NA
VEF79228.1\|1176805_1178284_+	putative teichoic acid flippase	NA	NA	NA	NA
VEF79229.1\|1178329_1180843_-\|holin	choline binding protein E CbpE	Q332C0	Clostridium_botulinum_C_phage	1.7e-09	22.8
VEF79230.1\|1181023_1181740_-	LPS biosynthesis protein	NA	NA	NA	NA
1181160:1181176	attR	NA	NA	NA	NA
VEF79231.1\|1181743_1183897_-	putative phosphotransferase LicD4	A0A1V0SAS8	Catovirus	2.0e-08	31.2
VEF79232.1\|1183905_1184874_-	putative glycosyl transferase	A0A1V0SAH6	Catovirus	4.1e-09	29.2
VEF79233.1\|1184870_1185707_-\|holin	phosphorylcholine transferase LicD3	NA	NA	NA	NA

DBSCAN-SWA_6

1354097 : 1363469

Streptococcus_phage(42.86%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEF79390.1\|1354097_1355066_+	thioredoxin reductase	Q9JRK7	Streptococcus_phage	2.2e-63	94.4
VEF79391.1\|1355097_1356009_-	putative sporulation transcription regulator whiA	Q7AWZ3	Streptococcus_phage	1.2e-146	90.8
VEF79392.1\|1356005_1356983_-	transporter	A1IMD5	Streptococcus_phage	1.5e-171	92.3
VEF79393.1\|1356979_1357870_-	P-loop-containing kinase	A0A0R8VB27	Thermobifida_phage	1.8e-06	30.6
VEF79394.1\|1357921_1358302_-	endoribonuclease L-PSP	NA	NA	NA	NA
VEF79395.1\|1358311_1358899_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
VEF79396.1\|1358907_1360116_-\|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.8e-132	59.2
VEF79397.1\|1360171_1360342_-	membrane associated protein	NA	NA	NA	NA
VEF79398.1\|1360341_1360848_-	dihydrofolate reductase	A0A0A8JB64	Ralstonia_phage	1.5e-18	33.6
VEF79399.1\|1360966_1361641_-	cytidylate kinase	NA	NA	NA	NA
VEF79400.1\|1361650_1362160_-	Teichoic acids export ATP-binding protein tagH	NA	NA	NA	NA
VEF79401.1\|1362500_1363469_-	Glycosyl transferase	V5USA4	Oenococcus_phage	1.3e-74	48.1

DBSCAN-SWA_7

1448761 : 1459499