CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134344	Bifidobacterium bifidum strain NCTC13001 genome assembly, chromosome: 1	2 crisprs	DEDDh,WYL,cas3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134344_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134344_1

863345-863450

Orphan

Consensus_repeat	Method
GCGTCACGCTGTGCGTCCACGCACACAGTGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134344_1

>merge|LR134344|1|863345-863450|CRISPRCasFinder
GCGTCACGCTGTGCGTCCACGCACACAGTGACGCAATGCCAGAAATCCTTATTTTCCAAAGGTTTTGTGGTATGCGTCACGCTGTGCGTCCACGCACACAGTGACG

>LR134344|1|1|863345-863450|CRISPRCasFinder
GCGTCACGCTGTGCGTCCACGCACACAGTGACG	CAATGCCAGAAATCCTTATTTTCCAAAGGTTTTGTGGTAT
GCGTCACGCTGTGCGTCCACGCACACAGTGACG

Protein	Signature genes	Signature genes Name	Protein_function
LR134344.1\|VEG17470.1\|869660_875543_+\|hyaluronidase	unknown	unknown	gnl\|CDD\|369423
LR134344.1\|VEG17462.1\|866491_867121_+\|protein	unknown	unknown	unknown
LR134344.1\|VEG17448.1\|855849_856824_-\|Lipoprotein	unknown	unknown	unknown
LR134344.1\|VEG17464.1\|867245_867335_+\|cytosolic-protein	unknown	unknown	unknown
LR134344.1\|VEG17471.1\|875655_877080_-\|pyridine-nucleotide-disulfide-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|180907
LR134344.1\|VEG17446.1\|854753_855590_-\|transposase	unknown	unknown	unknown
LR134344.1\|VEG17450.1\|856898_857927_+\|transcription-elongation-factor-NusA	unknown	unknown	gnl\|CDD\|237061
LR134344.1\|VEG17440.1\|850048_850951_+\|tRNA-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|211337
LR134344.1\|VEG17454.1\|861404_861989_+\|ribosome-binding-factor-A-RbfA	unknown	unknown	gnl\|CDD\|234787
LR134344.1\|VEG17442.1\|851136_853320_+\|protein	unknown	unknown	gnl\|CDD\|379601
LR134344.1\|VEG17466.1\|867502_868201_-\|ribose-5-phosphate-isomerase-A	unknown	unknown	gnl\|CDD\|234816
LR134344.1\|VEG17468.1\|868350_869430_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|260010
LR134344.1\|VEG17458.1\|863604_864864_+\|riboflavin-kinase/FMN-adenylyltransferase	unknown	unknown	gnl\|CDD\|235536
LR134344.1\|VEG17456.1\|862031_863324_+\|tRNA-pseudouridine-synthase-B	unknown	unknown	gnl\|CDD\|235113
LR134344.1\|VEG17438.1\|844953_849837_-\|beta-n-acetylhexosaminidase-NagZ	unknown	unknown	gnl\|CDD\|119334
LR134344.1\|VEG17473.1\|877460_879137_-\|phosphoglucomutase	unknown	unknown	gnl\|CDD\|100094
LR134344.1\|VEG17452.1\|858136_861103_+\|protein-translation-initiation-factor-2-(IF-2)-InfB	unknown	unknown	gnl\|CDD\|235401
LR134344.1\|VEG17444.1\|853441_854242_+\|transglutaminase	unknown	unknown	gnl\|CDD\|224224
LR134344.1\|VEG17475.1\|879141_879249_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134344.1\|VEG17460.1\|865005_866406_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994

Protein	Function_ID	Function_description	E-value
LR134344.1\|VEG17470.1\|869660_875543_+\|hyaluronidase	gnl\|CDD\|369423	pfam07555, NAGidase, beta-N-acetylglucosaminidase. This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.	8.18028e-114
LR134344.1\|VEG17471.1\|875655_877080_-\|pyridine-nucleotide-disulfide-oxidoreductase-family-protein	gnl\|CDD\|180907	PRK07251, PRK07251, FAD-containing oxidoreductase.	1.6215e-158
LR134344.1\|VEG17466.1\|867502_868201_-\|ribose-5-phosphate-isomerase-A	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	5.09209e-120
LR134344.1\|VEG17450.1\|856898_857927_+\|transcription-elongation-factor-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	1.82898e-152
LR134344.1\|VEG17440.1\|850048_850951_+\|tRNA-pseudouridine-synthase-A	gnl\|CDD\|211337	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.	5.15031e-93
LR134344.1\|VEG17454.1\|861404_861989_+\|ribosome-binding-factor-A-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.65448e-40
LR134344.1\|VEG17442.1\|851136_853320_+\|protein	gnl\|CDD\|379601	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2. Circularly permuted ATP-grasp prototyped by Roseiflexus RoseRS_2616 that is associated in gene neighborhoods with a GCS2-like COOH-NH2 ligase, alpha/beta hydrolase fold peptidase, GAT-II -like amidohydrolase, and M20 peptidase. Members of this family are predicted to be involved in the biosynthesis of small peptides.	0
LR134344.1\|VEG17468.1\|868350_869430_-\|ribonuclease-HI	gnl\|CDD\|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	3.60416e-57
LR134344.1\|VEG17458.1\|863604_864864_+\|riboflavin-kinase/FMN-adenylyltransferase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.21148e-73
LR134344.1\|VEG17456.1\|862031_863324_+\|tRNA-pseudouridine-synthase-B	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	8.09435e-99
LR134344.1\|VEG17438.1\|844953_849837_-\|beta-n-acetylhexosaminidase-NagZ	gnl\|CDD\|119334	cd06564, GH20_DspB_LnbB-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	2.0312e-113
LR134344.1\|VEG17473.1\|877460_879137_-\|phosphoglucomutase	gnl\|CDD\|100094	cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
LR134344.1\|VEG17452.1\|858136_861103_+\|protein-translation-initiation-factor-2-(IF-2)-InfB	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
LR134344.1\|VEG17444.1\|853441_854242_+\|transglutaminase	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	4.25788e-27
LR134344.1\|VEG17460.1\|865005_866406_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0

>LR134344.1|VEG17456.1|862031_863324_+|tRNA-pseudouridine-synthase-B
MGTVPEASGGEQAPIVATQAAPVAGSAAPATPTSGLLVVDKPRGVTSHDIVAAARGALHMKKVGHAGTLDPMATGVLVVGFGNATRLLNHIVEHDKTYEATIRLGQSTTTDDADGELLSATSPERWQELLALPVAGGPQSAGENGPVNAAKGSAVAAAKVADDGSAYHPHQEAFLPDGQQLWRDRIDDIIALQLTGSIEQVPNTFSAIKINGQRAYDLARDGKDVQLKARRITVSAFGVLDVRFGYAPTRQLGLPLVSAADGRATTERDDAEATPVIDVDVRVSCSAGTYIRALGRDLGAALGVGGHLIRLRRTRVGGFDVSSPNVITAHVETREYTDRNGNHQSRNRAVLDVIGDELAGKALTMLDAARGTMPLLAITDQDAVNLRYGRRIPYDIHGTAAAYLPQSGEVVALVERAKRGEAKPATVFGA
>LR134344.1|VEG17454.1|861404_861989_+|ribosome-binding-factor-A-RbfA
MAGTNPRAARVAALIQRVIASSMEAQLHDKRLASVTITDVRVTNDLQIAKVYWTQLGHDGREQGERKRAKQALDQAKGRLRSLVGSKAGLRLTPQLQFIYDEVPSEAHEIEDILAVAHKRDEEIAKARETAQYAGDADPYKHPEERDDDEFDDDDEYDEYADDLDDDDVEGNGIGVETLEDDAENAADEATGDR
>LR134344.1|VEG17452.1|858136_861103_+|protein-translation-initiation-factor-2-(IF-2)-InfB
MAKKRVYELAKDFGVDSKTVLDKLKDMGEFVKSASSTVEAPVARKLKNAFQKGEAKPGASAAERKTPAPAPSEHRAPAVKPAPVAKPGLGKKPAAAPRPAEPRSAAPAAHVPSSNRGTTPRDNRNESRGDMRDARPNREGGENRPSPAQRHNPHAPSGQRGAFPGPRSHQPGHGGNAGGRPQDSRGGSHQGQPRQGQQPGAGSAPSANGGARPSTPGPRPGNNPFSRKQGMHAPTPRDIPRPHPMARPTVNGNHNDNRGGRGGRPGAGQGGRGGFRGGRPGQGAQGAKPGQWGHNRPGQTGGARPAGGNRFGAGAGTGAGQGGGFQNNSNTSGTGPSRGGGRGRGGAAGAFGRQGGKSSKARKNRLAKRQEFQEMKAPVIGGVRIPTGNGQTVRLRQGASLADLAEKINVNPAALVTVLFHLGEMATATQSLDESTFQILGEEIGWNIQIVSAEEEDKELLQQFDIDLDSEELQEDADLKPRPPVVTVMGHVDHGKTRLLDTIRKTNVIAREAGGITQRIGAYQVTVDLEGEKRKITFLDTPGHEAFTAMRARGAELTDVAILVVAADDGVMPQTVEAINHAQAAKVPIVVAVNKIDKPGANPEKVRGQLTEFGLVPEEYGGDTMFVDISAKQGTNVDKLLEAVLLTADADLDLRANPDMDARGATVEARLDKGRGAVATVLVQQGTLRIGDAIVAGTSYGRVRAMLDENGNHMKEATPSTPVQVLGLTSVPTAGDLFLVASDDRTARQIAEKRQATERAAQLAKRRKIVSLESLKEQFAKSEVDMLNIVIKGDSSGSVEALEDSLMKIEVSDEVGIQVIHRGVGAITQNDVNLATVDKAVIIGFNVRPNRQVADLADREGVEIKYYSIIYKAIEDIEAALKGMLKPEYEEVVTSHSEIREIFRSSKFGNIAGVMVQDGEVKRGTKCRILRNGVATVNDLEISSLRRFKDDVQSVKEGYEAGINLGTFNDIELGDIIETFEMQEVERK
>LR134344.1|VEG17450.1|856898_857927_+|transcription-elongation-factor-NusA
MELDLAGMHQLAIEQGIDLEQLDAALEEALRLAYLKTPHAAKHARVELDTRAGTFTVWARKEIPVEPTEDDPHPAPELGEEYDDTPRNFGRLAAATARQVIGQLFRKAEDDKVFGAFSGQKGKLVTGIVQQDASDPTNVHVAIGDVEAILPRREQVPGERYRHGERLRVYVVNVARGVKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPKGALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVASALSPAVATGVQVISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESTEAHAKKVAAEGK
>LR134344.1|VEG17448.1|855849_856824_-|Lipoprotein
MQTRHWPDHGIPCRERNISSWCRRIVAALCITALCGALSACSAPRIDGRAESEHQPSACESAYWAADASTATMNGRHHIIMRYLAAKQAVGQWSEVAATCTQRFAQGTIRSAQAEHVAVTLGTRLGGNDTYRTVSDDSLRQVLGIDLDGATLGAMSLAEDRAGFVMEVLAARDTPGATLSRSDRHKTAGQLLFTASGLSRDPREKVYDIQKILASPTSMTDSTTGLSVPTTALTEIDCAREQLAAMADDGASAKSKHTDKTGNNTNGNGDTDSATDTTDVNATDTNTVGTENDARLRVLSTLISSHITSAFALGYPDMDAFLFS
>LR134344.1|VEG17446.1|854753_855590_-|transposase
MSFSPRGKRCAPGGGLDGVRTPSSKAKKCPACGRAMKKNGRTGKGTQRWKCRACRLSSTMPQRGRRRARTLEEFLSWLPGPSSQTASESTGDAHALRKRIAWCWSIRPRIAPPDAKRHTVMADGTYMGHGWRLIIAIDGESGEVLAFQWRAYEELRRCCRRLEKLFRAGDSSPFPGRRLPQVGRWRAPRTGWRAASTRSSRTCCATRGLPEEHMLRACEWVCYMKTAHPRPESFIPDDPLEDGKATSPEPEGDASPAYGIGIDWNEFHTGTRYPNGTD
>LR134344.1|VEG17444.1|853441_854242_+|transglutaminase
MKKLVFDYEMKLTFSSPVTDHRFQLRCVPATGPRQQVVDVEVAIEPDVELETTIDSFDSVVMTGFIPQPHTIFSYSVKGIAFVDNAHIKSEIYKPLYRFNSALTIPGPCIEAMIAACRARIAGLPADATPIDQAWEVMDEVYQAFTYTPASTTIRTTAEQALAQRKGVCQDYAHVMLSVCRHVGLTARYIAGLLGGEGATHAWVEIYHDGRWIGLDPTHNRMVDDNYITIAHGRDYRDCMLDIGIFSGYQVQQNQWVNASVHEQLL
>LR134344.1|VEG17442.1|851136_853320_+|protein
MTERSARQFAEELVNRRGDINRELSRNGVRFGVYKNGEYHDRLFPYDPIPRIIESDEFDELEAGLKQRVNALNAYLKDIYSDKRIIHDGVIPEEYVYTSAGYFPQVNGVTPPGGIFAHIAGEDLVQGEDGRWWVLEDNLRIPSGASYPLFARDIERRTNPKLFRDVHVRDNRDYPRLLRKAMDFVSTEGIAVVLTPGRYNSAFFEHAYLAEKTGAALAFPEDLEVVDNKLYFLDYAGNRHRVGAVYRRLSDEYLDPFAFNPDSVIGVPGLLSAYRSGNVAIINAPGNGAADDKAIYYFVPQMVRYYLNEEPILHNAPTYMPMFEKDRKEVLDRMGELVIKDVAEAGGYGVVFGSSLDKAAREDLADRIKEDPRRFIAQEVIQFRDIDVIDPDSGEVSPRKCDLRAFVVTGQNTHVWYSGLTRYSSVPGQMIVNSSQGGGFKDTWVLAPEDGSTDRQREESVASVNLIPHSKRHSLSLVTASKADNLYWLGRYTERAFTTLVQFFPFYDRVMDTDVDAFRPFAKALDLPQDFEDFDGFIHSFLYDGTNPDSVRSAIVAAFNNAVVLRPELTSRLLQYVELAVKNITEAAERSASADDIYSQRDIADDMLAFWGGIENSTADITLKAFVFIGKYIERIDLYTRFHLDNSELDAPLAKLETYSRTLDGMPLPSCFVSGISWLLGQLPSRGYPELTSRLNEFLTDFNSRAITGDPKDAGMLNAMNMDAKRP
>LR134344.1|VEG17440.1|850048_850951_+|tRNA-pseudouridine-synthase-A
MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTGVHASHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTVAPSGFDARFSALERTYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPNPGGTTIREVKTAYWRRIPTRPLVVDGMGERYRTPAAESDLLCFTIVADAFARNMVRSLVGGCIQVGMGKRSTDWFREKMAVPLRESSTGPIAPQGLTLEHVAYPADDELAERAERIRAKRTL
>LR134344.1|VEG17438.1|844953_849837_-|beta-n-acetylhexosaminidase-NagZ
MRLRRVKAAIGSVLAAVTLLSMSLTGVTAAQASDDNLALNQTVTASSYEVATTAPEKAVDGDLGTRWGTAQNKAANEWIEVGLGGTKTVKQINIDFERKDADQNITSFKVELKQGDTYTKVYQKDTRAKQQEIILLDQAQQASAVKVTVLSADGGTMNWVNVGINEISVYSAPKETVLDTADTNHMLGATMTASSNETATLTPDKAIDQNRTGRNNRWASGYETPSNIWLKAEFPRLTAVKDIRIYFFERDVNPKPTNVQSFDLSYTDSEGTEHTLKSGYAMTASGTGYVADVVIQLDQAVNARSLKLSNFAIKSSEYNNVSVAEWEAYSNDQAEPGATLDSVVSDLESNHLTIETDTDTLALPTVPDGYTVKFNGADYEQLIAADGTVNHPLVDKTVQVAYVVTDTATGNTKTTSDIPYVVKGTNQQQEGNNAKPTIIPEIAEWHSTSAAKLAASAVTKVVYDDDSLKAVVDEFVADYKDFTGIKLTAKKGAAEAGAFNFVKTDSTAAIAQLGDEGYTMNIQADRVVAKSSSVTGNMYAMQTILQMTKQDASGFVIGSMRDYPRFTTRGLLLDVARKPVSLEMMREITRTMRYYKMNDFQAHLSDNYIFLENYGKRDNEDEAFKAYDAFRLESSLTNDKGESPTAEDYSISKKTFKQFIQDERALGMNVVPEIDVPAHANSFTKIWPELMVKGRVSPINSNRPLIDHLDVSKPETIAKIKEIFDDYTKGDDPTFDSDTTVHIGADEFLYNYTAYRKFINEIVPYIKDTNTVRMWGGLTWINDHKTEITKDAIENVEMNLWSKDWADGLQMYNMGYKLINTIDDYGYMVPNGSYGRANAYGDLLNISRVFDSFEPNKVRSSGGYQAVPSGDDQMLGAAFAIWSDNIDKSASGLTESDLYWRFFDAMPFYAEKTWAATGKEKGTAAKLTALAAKQGTGPRTNPYYQATSKNSVYESYDFNDGLADASGNGRDLTIGDGSKAAVKDQSLKLAGGSSYATSKLDKLGNGNELTFDVTLQQAAKPGDILFEADAPYGTHDIRVMENGKLGFTRELYNYYFDYELPVGKTVTVTIKVDQQTTKLYVDGEFVSDATGKYIDKGIEKKTGITAATFALPLQRIGSKTSAINGVIDNVIVKKSEAETDQYNKSCWTGTTNSETQYNDTEGLLRYAFDNNPSTIWHSNWKGATDKLTGSNSFYAEIDMCQKYTINQFSFTPRTSQDSGQVTKADLYVKANANDEWKQVATDQVFEASRAKKTFMFDEQEVRYVKFVAKSSNDGWVAVSEFGVTNKPSSTVRVFVAAEPAEGGTVSVAAEGETGTDTAVDVASGASVTAKAVAADGYRFSGWFTTASETAVSTDATYTFAADGNTALTAKFTKDSTPDPGPKPTISSIAVTKPTVTDYKVGDTFDATGLAVTATMSDGSTKTLTAGEYTLAATQDGAAVALDEAFAKAGKVTVTVTANGKTATFDVTVTAKDPDPEPATLKSIKVTSRPDKATYTVDETFAKTGLAVTGTWSDGKTALLKDGEYKLSAVDADGKTVDLTKPFTAAGDVTVTVTSGKLTDSFTITVKAKTVTPTPGDNKPGENKPGADKPKPNTPDEVAKTGASVTAVVFSALLLLSAGYLLVRKRRI
>LR134344.1|VEG17458.1|863604_864864_+|riboflavin-kinase/FMN-adenylyltransferase
MKITTLAPDASGLVEWPTLSANRKSVVTVGVFDGMHRGHQAVIRRAVELAKADKAFSVVVMFDPRPGVVHAYAAAHDGQEPGDGFCDPMALTSVDQRLRTLENLGVDHVLIVRYTLAFATKSYRFFLGQMVGKLGMRTLVLGTDAAMGANRAGDVKAIGVLAQATGVFELEIVDDRGPGHVRVPADVTPQMPSEPGEPVDPTEGMTKAQLRAWSKKHQGREVRVWSSTNVRYLLAHGRIKAADEILGHAHAIEGTVVHGEERGRTIGFPTANLGSMIDGYIPVDGVYAGWLIDLGAAGAPADSDENASDGNSGSGNASVIPRVYDSGSSKARLAAESPYRWPAAISIGTKPTFNEETGLNERVVEAYAVTDEWLDLYGHDVRVEFAGFLRPQVKFDSADALKDELTRNVQETRELTSAR
>LR134344.1|VEG17460.1|865005_866406_-|DNA-repair-protein-RadA
MVKSATRYVCSECGWDGLKWVGRCPQCGQWGTVEEFHEARPAASSSRTAAPGRTSRTQAAASIVSAATPITQIDTSTASRLSTGFGEFDRVLGGGIVPGSVVLIAGEPGIGKSTLLLETAGNIAAGQPNGSVLYVSGEESQAQVRLRASRVNAMEQNLLLASTTDLATVLGLIERTRPTLAIVDSAQTIVSQDVDGISGGSTQVREVASALIDTAKTLNIPVLLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDPETALRMLRAVKNRFGPTDEVGCFDMSGEGIEEVSDPSGLFLSSADERVEGTCVTFTLDGHRSLPIEIQALVTSSVLPTPRRAVVGVETNRIAMLTAVLYRHGKVNLLANDLYVSTIAGGLAKEPACDLAIVAALASAARSKPIARDTCAIGEISLTGQIRPVPRLEHRLREAARLGFATAVVPPMRKRVTIEGLRIVEVTHLRDALESLGVV
>LR134344.1|VEG17462.1|866491_867121_+|protein
MAKTQSPSYPHGSSASRGKLIVVMIVAALVVVLALLSAFVWPGWALNKTDEVTKVQQQTATEPTKPSIKATALPDDASELLKAMPDSVLNYARTKAGASETWKSASPLEEYTLTYSTGKSAKDVTVIVAQWSDSDTVKKQYDELAKNLTGKELKSGDVKVSGKSTGSYTVRADSKDGKTATALWQNDTAVFEVTGSKESVLRFYEPFPL
>LR134344.1|VEG17464.1|867245_867335_+|cytosolic-protein
MGSVIKKRRKRMSKKKHRKMLRKTRHQRK
>LR134344.1|VEG17466.1|867502_868201_-|ribose-5-phosphate-isomerase-A
MDKAQQDALKKAAGIEAAKLIENGMIAGLGTGSTVRFLVDELGRRVKEEGLQFTGVTTSRRTQEQAEGYGIKIVDIDDVDHIDITIDGADEVDKNFNGIKGGGAALLWEKIVATNSNKIVWIVDESKVVDTIGKFPLPVEVIPFGAGHVIKQFEAKNYKPVLRLDADGKEVRTDENNFVVDLHLERIDHPQDLAEDLINTVGVVEHGLFLNMVDKVIVGDPNGPRVMTNGNK
>LR134344.1|VEG17468.1|868350_869430_-|ribonuclease-HI
MTITVSTDGSALGNPNGPMGWAWADHELNMAHSGGHEHGGDCDAGGATNGTNQIGELCAVLEALRAHPGAEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALIRAIDAELSRRAGSVKFVWVKGHAGNAGNEKVDDLARTYAGDCRSGVQEGYLPKEGWQSLLASEYAKGTDVPEDAQMLLDGKISTQEYHLGRGGESGEAGAEHESDGDNVAKRIRKPSLAELLAEPEGVPDYGETQSDTSSTTAMSTPTVPMTTESDATVALSSNSAQAEDTQSGSSTRSVAEPAAPRLSPTALTASGTLRFTPPPSTSPTYDGRPRIIHGLVRVDGYVNGDGTITLNNAAFYTDKQG
>LR134344.1|VEG17470.1|869660_875543_+|hyaluronidase
MRSKALGGLLAAALSLSPAVAIGVQTAYAAGGDTAATEYTLYPKPHSIRYDSGQYILRDINVIYDDDIDEATQDRLDEVAALKNLNVTESDAAVSGKTNVYVGVNGSDGKAETAIESKYSPDSAIFDKTDSYFLKSDNGTISVLGKDTDASFYGLTTLYQVLGQIDSLTIRNFTVTDYADVVSRGFIEGYYGNPWSTQDRINLMKWGGYYKLNSYFYAPKDDPKHNSQWRTLYTQDELDTKIKPLADAGNASKTRFVFALHPFMNNAIRFNSEANYQADLKVLQDKFAQTIGVGVRQIAILADDAANVGGNNYTKLLTDMVAWLKEMKKTYPDLKTTLPFVTQEYMGNGMSYFANFPKEVQIVMTGGRVWGEVSQNFTDTFTSNVGRGPYMWINWPCSDNSKSHLIMGGYDTFLHPGVDPSKIQGIVLNPMQQSEPSKVGIFGNATYSWNIWRSKSEADQAWQDSFSFVDHNSAVPTAASNALRELSKHTINQNMDSRVTALQESVDLAPALTAAKAKLADGTITAHDLTDIKAAFVTLQKAAKTYRAKGDAKMLGDIGKDYTGQDANEQIAPWIDCWDDTTKAALAYIAGIEAALNGDTSSTLKEYSDAQSAFAASKKHGFYYVNHTEYAEVGVQHIVPFIKAMDSYLSNKVQQEADPNVVTKTYISDVFTTPTSGSIEDIFDGKDSTVTVFQNPNYLHKGNYVGVKFSKATTLKSIRFAFNGGKNHFYHSKLQTTTDGENWTDVPDATFERPKGSEEPIKVTGLNITGVTGVRLIATADNGDDLWLGIKGIDVNKVEKETLAPYTATGVQLENLNATYSSTKEQMIDGNPSTITYLKDPNGDKIAAGAAVIVDLGSSKPIGEVTITGHASSPDDRPSQGVVEVSDDKATWTKLGDLSDDVTSTVSGNVTGRYVRIRNTAAKNVWWRVAEITVTPPETADPLKSVYTNKTQHGYTATLGANTAELFDKSHTMLDGGQYAGLDLLAIRDLTDVELNTGNANPSLQISDNGLVWTTVEPGNLTGKTARYVRVINDTDGAAFSVDKLKVGFSTVGKFGKLVSSDIQKRTDWGTDTRESGNAFDGDMTTVIKFAGQPRRGNTAVFDLGQPIDITSLRIYTQDTQYDYIRDTKVQMSVDGKTWVDAFEIGDGVSDTDTTTAFGDISDTNKKTDSNYPNVFYYGKDDIANGTGMRYLRLLTTADYPQRALAFNEFMVNQGAYVSTEANAAFSATKVEERGHAPSNMIDGDLTTTYKPSAADGSLTYKIDDPSDIKSFRIVQSGAASGATVTGTVYDAATGTTSGVTARTAARSTSEVTFGTLEQAINEFKVPDGKQLLSVKIAWGDAIPEISEFITLDSADTDADITTAKAALKEKIDATVDTSAWTANAKTAYDEAKATAQAVYGSPLVGKASIDAAASAVQSAIDAAQTKADAAAVAALRKLVDAAVTNDGHFYTTVTFTAYTDALDEVKEALKDTNNLSTADAASLKKAVDDALAALKDSTYQRELATIAVDSFATIDEADYTTNSYAAFKAAKEALDTLIAADGTKPATFKTKTAEYTTAKTALVNVAALKAQIAHESNYVEANYTADSWKAYSDALKAAKAKLVNGTTDSVAAALTALTAAENALVRTTTPPDTTVLDETIADMEKVNGSEYTTDSYKALTDAIAKAKSDKVKGDAGLNQQNIDAMKAAKEALVSTVELKAKVAEAGKVDSSKYTTASYEALSKLLAAKDDTTSDPVVKGLDTLYKSGTVKELAERVAAIDAAVAKLDARATGVKDYVDGIKLKDNDKGYYTDASYKAYSDAYKALKKLAAAGEGEVGIAEFTEAKEAFEAAEAKLAYKSADYGKIDDLLAKVPSDLSGYTADSVAKFEAAKKAVKRGLTIDQQSKVDAMADALEAAIKGLTLKSQAPGDNKGDGTQSGTHKGDDISKTGADVQVFAIIIALATCAGLGAVAYARRRREV
>LR134344.1|VEG17471.1|875655_877080_-|pyridine-nucleotide-disulfide-oxidoreductase-family-protein
MTSTSSTDVPSAISANALIIGFGKGGKTLAAKLASTGRTVVVAEASADMYGGTCINIGCLPSKSLILSADRARREGANRTAETREAAFEAAIREKRRVTAMLRDRNYHKLADQGNITVITGRARFTGAHSAEITTADGPVAVAADMMFINTGATPHIPDIPGIRTTPGVYTSTGLMDVDELPQRLVIIGAGFIGLEFASMFADFGTAVTVLQHSDEFLPREDEDVAAAIRAQLESQGVRFLFGADTKAITSADDGIRLSVSMRGTSDVGSEARLCLSTDAVLVATGRTPNVEGLNLEAAGVELTERGAVKVDDLLRTTADGIWALGDVNGGPQHTYISLDDYRVVWSQLNGSARPYTLSDRRNVPSSTFLHTPYSRVGLNEREAKAAGLDYVVKRLPVATVPKAQVMRRPEGMMKALVENGTDRILGAMLLAAESHEVINIVKLAMDMGAPASTLRDMMFTHPTMAEALNDLFA
>LR134344.1|VEG17473.1|877460_879137_-|phosphoglucomutase
MVANNAGKPATPADLINVDEVIGKYYDLVPDPAVPEQRVIFGTSGHRGSSLKTSFNEAHIVAITQAIAEYRKKAGVTGPLYLGRDTHALSGPAEKTAIEVLVANGVHVRVDSRGDFVPTPVVSQAILTHNRAADGTQRFEGEGLADGIVVTPSHNPPTDGGFKYDPVTGGPAPAETTNAIAARANELLGDFKSIKRVPYEEAIKSEYVEGFDFREHYVADLGNVIDFDVIRDSGVRLGIDPLGGASVNYWPLINEKYGLNIGVVRPEVDPTWRFMTIDHDGKIRMDPSSPYAMKGLVDQLNAGAWDKYDLVGGTDPDADRHGIVCPNWGVMNPNHYIAVCVEYLFGGNRPGWPEGTGIGKTLVSSSLIDRVASSINAKLVEVPVGFKWFVDPLFSGEVAFGGEESSGMSFLRRDGRVWTTDKDGLIPDLLAAEITAKTGKNPAQLHQDQVARFGESWYKRVDTPTTLEQKAKFAKLTGDDVAATQLAGEDITAKLTEAPGNHAKIGGLKVTTKDNWFAARPSGTENIYKVYAESFVSPEALDKVLDEAKLVVDKALGE
>LR134344.1|VEG17475.1|879141_879249_-|Uncharacterised-protein
MACAGSTPGNITNILEQKITISHKNVTQMTPVVAK

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Crispr_ID: LR134344_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134344_2

1380908-1380993

Orphan

Consensus_repeat	Method
CGTTTGCGTTCCTAAGTGCGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134344_2

>merge|LR134344|2|1380908-1380993|CRISPRCasFinder
CGTTTGCGTTCCTAAGTGCGCGCCGAACCGGCAAGTGCGCGCACATAGCAACGCAAATGGCCCTGTTTGCGTTCCTAAGTGCGCGC

>LR134344|2|2|1380908-1380993|CRISPRCasFinder
CGTTTGCGTTCCTAAGTGCGCGC	CGAACCGGCAAGTGCGCGCACATAGCAACGCAAATGGCCC
TGTTTGCGTTCCTAAGTGCGCGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134344.1\|VEG18272.1\|1374901_1375453_-\|membrane-protein	unknown	unknown	gnl\|CDD\|377672
LR134344.1\|VEG18298.1\|1384310_1384556_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|378873
LR134344.1\|VEG18282.1\|1377798_1378011_+\|macrolide-efflux-protein	unknown	unknown	gnl\|CDD\|340863
LR134344.1\|VEG18304.1\|1385945_1386584_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|379112
LR134344.1\|VEG18290.1\|1381150_1381846_-\|protein	unknown	unknown	gnl\|CDD\|376837
LR134344.1\|VEG18284.1\|1378291_1379254_-\|Co/Zn/Cd-efflux-system-protein	unknown	unknown	unknown
LR134344.1\|VEG18292.1\|1381950_1382544_-\|integral-membrane-sensor-signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|214643
LR134344.1\|VEG18286.1\|1379667_1380135_+\|lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|319923
LR134344.1\|VEG18302.1\|1385414_1385903_-\|GNAT-family-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134344.1\|VEG18270.1\|1374323_1374926_+\|NAD(P)H-oxidoreductase	unknown	unknown	gnl\|CDD\|376808
LR134344.1\|VEG18278.1\|1376888_1377110_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134344.1\|VEG18280.1\|1377127_1377850_+\|MFS-transporter-macrolide-efflux-protein	unknown	unknown	gnl\|CDD\|162098
LR134344.1\|VEG18276.1\|1375755_1376649_-\|protein	unknown	unknown	unknown
LR134344.1\|VEG18274.1\|1375677_1375833_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134344.1\|VEG18306.1\|1386781_1387150_+\|protein	unknown	unknown	gnl\|CDD\|225730
LR134344.1\|VEG18288.1\|1380050_1380749_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134344.1\|VEG18308.1\|1387221_1388073_+\|endonuclease-IV-Nfo	unknown	unknown	gnl\|CDD\|179214
LR134344.1\|VEG18294.1\|1382629_1383592_+\|acetyltransferase-family-protein	unknown	unknown	gnl\|CDD\|119345
LR134344.1\|VEG18296.1\|1383575_1383761_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134344.1\|VEG18300.1\|1385086_1385425_+\|transcriptional-regulator	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134344.1\|VEG18272.1\|1374901_1375453_-\|membrane-protein	gnl\|CDD\|377672	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV. CmpB is a family of membrane proteins that are likely to be part of a two-component type IV ABC-transporter system. Families can transport multiple drugs including ethidium and fluoroquinolones. UniProtKB:Q83XH0 is a member of TCDB family 3.A.1.121.4.	1.0422e-22
LR134344.1\|VEG18282.1\|1377798_1378011_+\|macrolide-efflux-protein	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.37103e-05
LR134344.1\|VEG18298.1\|1384310_1384556_+\|NUDIX-hydrolase	gnl\|CDD\|378873	pfam12535, Nudix_N, Hydrolase of X-linked nucleoside diphosphate N terminal. This family of proteins is found in eukaryotes. Proteins in this family are typically between 847 and 5344 amino acids in length. These enzymes hydrolyze the molecular motif of a nucleoside diphosphate linked to some other moiety, X.	1.0494e-23
LR134344.1\|VEG18304.1\|1385945_1386584_-\|acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.25276e-29
LR134344.1\|VEG18290.1\|1381150_1381846_-\|protein	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	1.57537e-58
LR134344.1\|VEG18292.1\|1381950_1382544_-\|integral-membrane-sensor-signal-transduction-histidine-kinase	gnl\|CDD\|214643	smart00387, HATPase_c, Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.	8.11157e-09
LR134344.1\|VEG18286.1\|1379667_1380135_+\|lactoylglutathione-lyase	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	8.16488e-43
LR134344.1\|VEG18302.1\|1385414_1385903_-\|GNAT-family-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.84946e-12
LR134344.1\|VEG18270.1\|1374323_1374926_+\|NAD(P)H-oxidoreductase	gnl\|CDD\|376808	pfam02525, Flavodoxin_2, Flavodoxin-like fold. This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.	8.18926e-39
LR134344.1\|VEG18280.1\|1377127_1377850_+\|MFS-transporter-macrolide-efflux-protein	gnl\|CDD\|162098	TIGR00900, multidrug_transporter, H+ Antiporter protein. [Transport and binding proteins, Cations and iron carrying compounds].	5.60482e-30
LR134344.1\|VEG18294.1\|1382629_1383592_+\|acetyltransferase-family-protein	gnl\|CDD\|119345	cd06553, ASCH_Ef3133_like, ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.	9.16497e-45
LR134344.1\|VEG18306.1\|1386781_1387150_+\|protein	gnl\|CDD\|225730	COG3189, COG3189, Uncharacterized conserved protein [Function unknown].	1.06978e-50
LR134344.1\|VEG18308.1\|1387221_1388073_+\|endonuclease-IV-Nfo	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	3.88657e-95

>LR134344.1|VEG18288.1|1380050_1380749_-|Uncharacterised-protein
MDVSDVIARREFMPTYIWLDVAFLIGFAALLVWRRKYMTLLVGLVMGGVYFAVGYGAFNLLTHSRSISGGSTFWVLLWMSVSYGFTNFSWLWLRLSRDRHLAEWSMLILVWWFCCPLMSQTFTARFASGMQPIVIQRTTGAYHGWMAVILSRRRMVDHAVCRRSAWIPADQARGRRRYPKHLMYECTGISPTLLYSRTTIVRTACQRWFSNHPAQSTTASMLLPSGSSTNAE
>LR134344.1|VEG18286.1|1379667_1380135_+|lactoylglutathione-lyase
MISDNKRIEYCCHVTYAARTVAGMLDHITLHVRDVGRSIAFYEHALAPLGYIVKAHHEPTLGFGVDDGTPHSDFYVSPLDDAALAPPPTHIAFLAPNREAVRGFHAAALAVGGRDNGAPGPRPYHPGYYSAFVLDPDGNNIEAVVDWAGWFENHR
>LR134344.1|VEG18284.1|1378291_1379254_-|Co/Zn/Cd-efflux-system-protein
MRRTVIIVAVMLCAAIALFASIPRLMRFVWPASGPEPRRASDAYCSATLSSGDNKEMLSVEQALNAEIITRAAVKRGLPDHAATVAIATAMQETRLMNLSYGDRDSVGLFQQRPSQGWGAKEQLMDETYAANRFYDELVKVPNWQSVPVEDAAQSVQRSQYPDRHADWTNLARTWAAGLTGETGAGVACALEPAQPSDADMDGLTSDFRNEFPTVMVSQPSSLEPSSKTQDDGGDKAADNSAANDGSGKTTSKTLTFTMSAGTDTENGKRLCRQATAWLVVHARRYGIDSLRANGMRWNRTDGVWAGTETGDLTITATLA
>LR134344.1|VEG18282.1|1377798_1378011_+|macrolide-efflux-protein
MQKESDVSLQGRVLGLLISVSAFGVPAGMLVFGPLADVVDVRLLFVVGGLMTVPIGAYVMRSARRNRVAE
>LR134344.1|VEG18280.1|1377127_1377850_+|MFS-transporter-macrolide-efflux-protein
MHCIGRQTVEQTLSLFGSSVVQYAIFWYLVLRSNSGMVMTGAMVAAALPQAIVSVFGGVWADRWNRKLLVMLPDAVIAAVTICLSASMAVGWGDTGLILVVLVIRSAGGGIQTPAVQSFIPQIVPEAWLLRVNAINGTLQTAISIASPAIAAALVNLMPLWMIMLVDVSTAIVGIGFVALIRLDDARLRRPGESSDDALRATSISVSSCSPISLTGLPRPRTRSCKRRATCPCRGGYWVC
>LR134344.1|VEG18278.1|1376888_1377110_-|Uncharacterised-protein
MSFLFRRRNPGSRHVYRYGPLRITCVDRDVPIDVRVNAHLMYKVVLSWEDKARCATPFDMIARDLGEFWLLDQ
>LR134344.1|VEG18276.1|1375755_1376649_-|protein
MEAAIGMEIREHKSSFAVYVVLRVLVIAVAVLEFFNGDYEAVFLCILTLLLLLAPAFVQVRFRIELPSALEVIVLVFVFAAEILGEISSFYEIFPFWDTVLHTMNGFLAAAIGFSLVDLLNRSDRAKFELSPLYLAIVSFCFSMTIGVVWEFFEFSMDMLFGFDMQKDAVVHSISSVMLDPAHANRAIHINDITQVAVNGRDLGLGGYLDIGLIDTMEDLIVNFIGAVVFSVIGFIYVKNRGKGVSVISRFVPRRKSHDRDYLRLAGGDGDASLAPGAQAHQTQHQSQHDPHHHDHP
>LR134344.1|VEG18274.1|1375677_1375833_+|Uncharacterised-protein
MLAIAAELVIIGVQVLPFSPAALKPASWVIVVVWIVLGLVLRLMSLRSRRE
>LR134344.1|VEG18272.1|1374901_1375453_-|membrane-protein
MAIVIALRRIDRGWKVVLVGGLAGGMLEFAMSLIQQYLLGSRSWNYANEPLNIGGRTTVPFMLFWGLLCYLIVRFILPLVLWLVHLIDDTWHTRLATILLAWILIDSVVTPPAIFLYGQRANGAVFDNWFAQHIGQLSMTTSCACISRTCACESHRGSSGTIYRPPARSAVMAYGRHARLAPS
>LR134344.1|VEG18270.1|1374323_1374926_+|NAD(P)H-oxidoreductase
MSNNILVITSNPEKDSMTDAVGAAFAAGAVERGASADVLDLYDEGFNPVYSAADRAHYLGHAPMPEDVVPIQRRLAQADVIALVFPIYWYTMPAMVKGLFDRVICRGFAYHPDGTPGALADKTVRVIMLTGSSRQWYESDGIGESLDNQICRQTFAKYCGVKDVELVYVDNLSMGDDSSDKRKAAAAQLEGIRQLGASLA
>LR134344.1|VEG18290.1|1381150_1381846_-|protein
MCKRFALDLDWDAIAAQFSVAEEDVRGDVLPRPSYNIAPTQNIAVIAQGKDGHRHLTGAYWSLIPSWSPGKTLPYPTYNARVESAHVKSTFAESTRSRRTIIPASGYYEWRGRRPFYFSPEMESTALAMAGLYSWRRPSAASLWQLTATILTCPAVDGPATVHDRMPLLVPAGMTSEWLDPSIDGARLLAPMRKAGAELSARLHFHEVAPPEGDGPSLIRPINREEPMRLF
>LR134344.1|VEG18292.1|1381950_1382544_-|integral-membrane-sensor-signal-transduction-histidine-kinase
MSVAGRHAAEAGRRTVRRGCRPAAPVGQGEDPVDRPVEAGVFARLDDMLARPARPGGRGVHRFRGRVRVPKGQGHAPNPRLGEGAPQPHAITCTVQAGENHTIITIDSTTRPPENAADAEDLIQPFHRGDDTRMANRPGHGLGLSIAKACTDAMQATLAVSRPSPGTFRAEIKLPNRPTQRHCPQQKEHGHRPHARQ
>LR134344.1|VEG18294.1|1382629_1383592_+|acetyltransferase-family-protein
MRLTEVWRADPERTFELFSEFPADENGFENQAAGMDRERFAVYVHELEEQSRGIGLQPGWVPSSKYVLINDEGAYVGIFNLRHRLNDNLRVGAGHIGYGIAPQYRGRGYATVGLRLTLDKARELGIDEAYLSVHKDNRASLAVQQHCGARIDHEDGLEYYTRISTAPEPGNLPKAEFMFPGPERDRLVGLILAGTKTATAALMIEYEEDDEPLPQVGERSALVDSSERPVAILVTTAVDVIPLGKITDRHAIDEGEGDTTAAAWRHTHESFWNAPEYRNEFADPDFPLNDDSLVVFEHFKVVRLLDSMANKTADGYEQQV
>LR134344.1|VEG18296.1|1383575_1383761_+|Uncharacterised-protein
MNSKYEVIRQFVAAHGGRAELIEHETAIEDSYHTLAIDPRLVVECNVIAGCFNGEDFVKPL
>LR134344.1|VEG18298.1|1384310_1384556_+|NUDIX-hydrolase
MIAAGRTLLEQARELQALAQTGLAYCKDPFDRERYERIRAIAVDMLAMQADVPAEEMRRLLSAGYPTPKLDTRAAIATPTG
>LR134344.1|VEG18300.1|1385086_1385425_+|transcriptional-regulator
MLADAEQWRRLFDTGVTSDSPEAQRLAAQIMDKNIKAQVPQDAEEQAAMPLSDTLGVVRSALCGDPRFADPCGAALYGSKTCADFANEATRIHVQRLAQQLERQLDQRPASS
>LR134344.1|VEG18302.1|1385414_1385903_-|GNAT-family-acetyltransferase
MTTRIVPIEPQWFMQKAEVQSRTWRELNQGHIPQDIVDAITPAFALKLTRGHAADPNQVVLIALADDRVVGFIELLRTPRSPINRPEAAELASLYVLESEHRHGVGRALVEAGRQAVGNDRLVLWVVGFNTNAQGFYRHIGFHETGLTQTEDMGPELEMINY
>LR134344.1|VEG18304.1|1385945_1386584_-|acetyltransferase
MNTIETERLLLRPWKVDDAAEAASLFRYASDPEIGLRCGWPPHTSVEGSMHDIRNILAVENNWAITIKGGAPNSNAPVGSIALMPVSHYTADAVASDPELTKRYGKYLGDNALEVGYWIGRPFWGKGYMPEALTAVLGYAFDTLRKDAVWGGHFAENTQSERVQAKCGLHVVAESKQDYYPLIDRHYDRVYRIITAGEWRDAEHRQMARMIA
>LR134344.1|VEG18306.1|1386781_1387150_+|protein
MGRMGIAIKRIYESPEAPDGYRVLVDRLWPRGMTKERAALDLWMKDVAPSPQLRKWFGHDLARFAEFRAQYIAELDANAAAEELLRICAEYPDVTLLYAAKDPQVNHALVLRDYLEDATAAK
>LR134344.1|VEG18308.1|1387221_1388073_+|endonuclease-IV-Nfo
MKELYIGSHLSTAGGWSALLKRSHEEHGTTFAFFPRSPYGRPSKALNPSEADAFARQLTAEHYGPLVVHAPYVYNLAGKDPDKREFAIRALAEDIRLLTPIRETGQEIYINIHPGAHVGQGPDRGCSLISDGLNRVFGLEPGIMVLLETMAGKGTECGRNFEELATIIDGVDDKANVGVTVDTCHVLDAGYDLVNDFDGVMRQLDDVIGLERVKAVHVNDSQFGLSSHKDRHANIGDGRLGIPFFTRMVNDPRLSRLPMILETKELTETTHREEIALLRGLVQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

241871 : 368923

112

Enterobacteria_phage(13.04%)

transposase,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG16491.1\|241871_242159_+\|transposase	transposase IS3/IS911 family protein	NA	NA	NA	NA
VEG16493.1\|242209_242920_+\|transposase	ISSdy1 family transposase	NA	NA	NA	NA
VEG16495.1\|242894_243140_-	KR domain-containing protein	NA	NA	NA	NA
VEG16497.1\|243155_244724_-	transporter, major facilitator family protein	NA	NA	NA	NA
VEG16499.1\|244897_245647_+	cathepsin L4	NA	NA	NA	NA
VEG16501.1\|245764_247072_-	DNA-binding protein	NA	NA	NA	NA
VEG16503.1\|247225_247540_+	type II restriction-modification system restriction subunit	NA	NA	NA	NA
VEG16505.1\|247850_250031_-	beta-galactosidase	NA	NA	NA	NA
VEG16507.1\|250502_252971_-	metallophosphoesterase	NA	NA	NA	NA
VEG16509.1\|253516_254272_+\|transposase	IS1557 family transposase	NA	NA	NA	NA
VEG16511.1\|254404_254653_-	glutaredoxin	NA	NA	NA	NA
VEG16513.1\|254782_255754_-	ribonuclease BN-like family	NA	NA	NA	NA
VEG16515.1\|255781_256339_+	thioredoxin peroxidase	NA	NA	NA	NA
VEG16517.1\|256413_256668_-	ABC transporter	NA	NA	NA	NA
VEG16519.1\|256833_257475_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
VEG16521.1\|257706_258186_+	SPOUT methyltransferase	NA	NA	NA	NA
VEG16523.1\|258202_261622_-	ABC transporter permease	NA	NA	NA	NA
VEG16525.1\|261630_262332_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-35	35.8
VEG16527.1\|262469_263039_+	tetR family transcriptional regulator	NA	NA	NA	NA
VEG16529.1\|263779_265276_+	amino acid permease	NA	NA	NA	NA
VEG16531.1\|265572_269451_+	evolved beta-galactosidase subunit alpha	L0N6M2	Herpes_simplex_virus	1.4e-95	35.0
VEG16533.1\|269481_269778_+	Uncharacterised protein	NA	NA	NA	NA
VEG16535.1\|269823_270813_+	protein	NA	NA	NA	NA
VEG16537.1\|271249_272302_-	ketol-acid reductoisomerase	NA	NA	NA	NA
VEG16539.1\|272720_273773_-	ketol-acid reductoisomerase	NA	NA	NA	NA
VEG16541.1\|274018_275389_-	transmembrane transport protein	NA	NA	NA	NA
VEG16543.1\|275978_277664_-	sucrose transporter ScrT	NA	NA	NA	NA
VEG16545.1\|277714_278146_-	sucrose phosphorylase ScrP	NA	NA	NA	NA
VEG16547.1\|278228_279275_-	LacI family transcriptional regulator	NA	NA	NA	NA
VEG16549.1\|279434_279803_-	family protein CrcB	NA	NA	NA	NA
VEG16551.1\|279804_280749_-	family protein CrcB	NA	NA	NA	NA
VEG16553.1\|280823_282110_-	adenylosuccinate synthetase	A0A285PX35	Cedratvirus	1.9e-65	35.4
VEG16555.1\|282399_283467_-	fructose-bisphosphate aldolase	NA	NA	NA	NA
VEG16557.1\|283605_284901_+	polysaccharide deacetylase	NA	NA	NA	NA
VEG16559.1\|285279_285621_+	XRE family transcriptional regulator	NA	NA	NA	NA
VEG16561.1\|285753_285864_-	Uncharacterised protein	NA	NA	NA	NA
VEG16563.1\|285931_286234_+	Uncharacterised protein	NA	NA	NA	NA
VEG16565.1\|286431_286800_+	Uncharacterised protein	NA	NA	NA	NA
VEG16567.1\|286802_287150_+	Uncharacterised protein	NA	NA	NA	NA
VEG16569.1\|287164_287548_+	Uncharacterised protein	NA	NA	NA	NA
VEG16571.1\|287544_288216_+	Uncharacterised protein	NA	NA	NA	NA
VEG16573.1\|288326_288647_-	mobilization protein	NA	NA	NA	NA
VEG16575.1\|289103_290789_-	DNA-binding protein	NA	NA	NA	NA
VEG16577.1\|291298_292237_-	endopeptidase HtpX	NA	NA	NA	NA
VEG16579.1\|292408_293824_-	putative ferredoxin/ferredoxin-NADP reductase	NA	NA	NA	NA
VEG16581.1\|294030_296232_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.0e-39	28.2
VEG16583.1\|296610_298533_-\|protease	Trypsin-like serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	1.1e-13	25.8
VEG16585.1\|298901_300203_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.8e-53	32.4
VEG16587.1\|300547_300715_-\|transposase	transposase for IS3509a	NA	NA	NA	NA
VEG16589.1\|301243_301780_+	phage lysin-like lysozyme M1	A0A0A1ERA5	Lactobacillus_phage	2.1e-31	47.2
VEG16591.1\|302157_302460_+	acm	NA	NA	NA	NA
VEG16593.1\|302531_302807_+	protein	NA	NA	NA	NA
VEG16595.1\|303021_304167_+	cytosine methyl transferase Dcm	R4TMW4	Halovirus	5.2e-27	31.5
VEG16597.1\|304163_305372_-	HindVP restriction endonuclease	NA	NA	NA	NA
VEG16599.1\|305474_305672_+	Uncharacterised protein	NA	NA	NA	NA
VEG16601.1\|306131_306311_-	Uncharacterised protein	NA	NA	NA	NA
VEG16603.1\|306933_307170_-	Uncharacterised protein	NA	NA	NA	NA
VEG16605.1\|307199_307454_-\|transposase	IS3520 family transposase	Q6H9S3	Enterobacteria_phage	7.7e-08	40.8
VEG16607.1\|307465_307816_-\|transposase	IS3520 family transposase	NA	NA	NA	NA
VEG16609.1\|308134_308413_-\|transposase	IS6110 family transposase	NA	NA	NA	NA
VEG16611.1\|308697_309174_-	acetyltransferase family protein	NA	NA	NA	NA
VEG16613.1\|309191_310010_-	hydrolase	NA	NA	NA	NA
VEG16615.1\|310131_310464_-	protein	NA	NA	NA	NA
VEG16617.1\|310899_311298_+	DivIVA domain	NA	NA	NA	NA
VEG16619.1\|311448_311964_+	MutT/nudix family protein	NA	NA	NA	NA
VEG16621.1\|311960_315146_+	DNA/RNA helicase	U3PFS7	Lactobacillus_phage	1.7e-19	26.0
VEG16622.1\|315495_315996_+	protein	NA	NA	NA	NA
VEG16624.1\|316000_317005_-	bifunctional methionine sulfoxide reductase A/B	NA	NA	NA	NA
VEG16626.1\|317106_317487_-	Uncharacterised protein	NA	NA	NA	NA
VEG16628.1\|317685_318441_-	protein	NA	NA	NA	NA
VEG16630.1\|318704_319679_-	permease	NA	NA	NA	NA
VEG16632.1\|319714_320764_-	lysophospholipase L2	NA	NA	NA	NA
VEG16634.1\|320922_321879_-	pip4 phage infection protein	NA	NA	NA	NA
VEG16636.1\|321885_323250_-	pip4 phage infection protein	NA	NA	NA	NA
VEG16638.1\|323246_326033_-	pip3 phage infection protein	NA	NA	NA	NA
VEG16640.1\|326296_328915_-	Xaa-Pro dipeptidase	NA	NA	NA	NA
VEG16642.1\|329067_329769_+	FHA domain-containing protein	NA	NA	NA	NA
VEG16644.1\|329796_330339_+	FHA domain-containing protein	NA	NA	NA	NA
VEG16646.1\|330345_332004_+	protein phosphatase 2C	NA	NA	NA	NA
VEG16648.1\|332000_333479_+	cell division protein ftsW	NA	NA	NA	NA
VEG16650.1\|333475_334942_+	penicillin-binding protein Pbp	NA	NA	NA	NA
VEG16652.1\|334938_335922_+	Serine/threonine protein kinase	T2AWK4	Cannes_8_virus	2.2e-18	29.9
VEG16654.1\|335924_337982_+	serine/threonine protein kinase	Q8JE84	Murine_leukemia_virus	2.0e-16	31.8
VEG16656.1\|338214_338859_-	para-aminobenzoate synthase glutamine amidotransferase component II PabA	A0A0P0IKJ1	Acinetobacter_phage	1.3e-35	40.7
VEG16658.1\|338954_340184_-	Sortase family protein	NA	NA	NA	NA
VEG16660.1\|340180_340969_-	protein	NA	NA	NA	NA
VEG16662.1\|341046_341487_+	septation inhibitor protein	NA	NA	NA	NA
VEG16664.1\|341612_342941_-	Methyltransferase	NA	NA	NA	NA
VEG16666.1\|343161_343899_-	Integrase	NA	NA	NA	NA
VEG16668.1\|343895_344681_-	rhomboid family protein	NA	NA	NA	NA
VEG16670.1\|344867_345089_+	secreted protein	NA	NA	NA	NA
VEG16672.1\|345807_348261_-	GlgP1 glycogen phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	4.5e-12	43.7
VEG16674.1\|348597_349005_+	protein	NA	NA	NA	NA
VEG16676.1\|349291_349555_+\|transposase	IS204/IS1001/IS1096/IS1165 family transposase	NA	NA	NA	NA
VEG16678.1\|349976_350291_-\|transposase	transposase	A0A2L1IVB6	Escherichia_phage	1.9e-08	48.1
VEG16680.1\|350360_350615_+	TnpB trasposase subunit B	Q8W6R2	Burkholderia_virus	2.5e-14	50.0
VEG16682.1\|351035_353087_-	efflux transporter protein	A0A2H4PQR6	Staphylococcus_phage	1.5e-05	25.7
VEG16684.1\|353317_353428_-	protein	NA	NA	NA	NA
VEG16686.1\|354058_354760_+	TetR family transcriptional regulator	NA	NA	NA	NA
VEG16688.1\|354916_356188_+	transporter, major facilitator family protein	NA	NA	NA	NA
VEG16690.1\|356526_357576_-	rhamnose biosynthesis dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.9e-78	48.8
VEG16692.1\|357713_359468_+	Uncharacterised protein	NA	NA	NA	NA
VEG16694.1\|359471_360107_+	mutt1	NA	NA	NA	NA
VEG16696.1\|360165_361344_-	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	4.7e-92	44.2
VEG16698.1\|361634_362813_-\|transposase	mutator type transposase	A0A220NQR7	Corynebacterium_phage	4.4e-37	32.7
VEG16700.1\|362954_364277_+	beta-galactosidase	NA	NA	NA	NA
VEG16702.1\|364286_364868_-\|transposase	ISXoo11 transposase	A0A0N9SJT9	Paenibacillus_phage	1.2e-06	37.5
VEG16704.1\|365191_365431_-	Uncharacterised protein	NA	NA	NA	NA
VEG16706.1\|365457_365685_-	Uncharacterised protein	NA	NA	NA	NA
VEG16708.1\|366063_366438_+\|transposase	IS3/IS911 family transposase	B6ETC4	Enterobacteria_phage	5.7e-07	36.7
VEG16710.1\|366437_367385_+\|transposase	transposase	A0A0N7C1X7	Escherichia_phage	4.6e-37	40.9
VEG16712.1\|367657_368923_+\|transposase	transposase IS116/IS110/IS902 family protein	NA	NA	NA	NA

DBSCAN-SWA_2

1512913 : 1614855

121

Bifidobacterium_phage(83.08%)

capsid,portal,holin,transposase,terminase,tRNA,integrase,tail

attL 1556208:1556267|attR 1615884:1615946

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG18517.1\|1512913_1513459_+\|integrase	phage integrase	NA	NA	NA	NA
VEG18519.1\|1513427_1514078_-	cytosolic protein	NA	NA	NA	NA
VEG18521.1\|1514081_1514357_-	hydrolase	NA	NA	NA	NA
VEG18523.1\|1514367_1514715_-	protein	NA	NA	NA	NA
VEG18525.1\|1514838_1517397_-	helicase	M1GXN2	Acanthocystis_turfacea_Chlorella_virus	8.2e-65	33.4
VEG18527.1\|1517505_1517832_-	protein	NA	NA	NA	NA
VEG18529.1\|1517836_1519774_-	transcriptional regulator	NA	NA	NA	NA
VEG18531.1\|1519911_1521378_-	UTP-glucose-1-phosphate uridylyltransferase	A0A1V0SLA1	Klosneuvirus	1.1e-37	32.1
VEG18533.1\|1522204_1522696_+	Aldo/keto diketogulonate reductase	A0A2H4PQR8	Staphylococcus_phage	2.1e-25	38.1
VEG18535.1\|1522739_1523501_-	carboxymuconolactone decarboxylase	NA	NA	NA	NA
VEG18537.1\|1523803_1525600_+	sugar kinase	NA	NA	NA	NA
VEG18539.1\|1525760_1526390_+	haloacid dehalogenase	NA	NA	NA	NA
VEG18541.1\|1526597_1527530_+	LysR family transcriptional regulator	NA	NA	NA	NA
VEG18543.1\|1527583_1528084_-	Uncharacterised protein	NA	NA	NA	NA
VEG18545.1\|1528220_1528796_-	tetR family transcriptional regulator	NA	NA	NA	NA
VEG18547.1\|1528896_1529103_-	Uncharacterised protein	NA	NA	NA	NA
VEG18549.1\|1529099_1529378_-	Trans-aconitate methyltransferase	NA	NA	NA	NA
VEG18551.1\|1529438_1529699_+	XRE family transcriptional regulator	NA	NA	NA	NA
VEG18553.1\|1529695_1530841_+	HipA domain-containing protein	NA	NA	NA	NA
VEG18555.1\|1530945_1531314_+	cytosolic protein	NA	NA	NA	NA
VEG18557.1\|1531339_1532335_-	transporter	NA	NA	NA	NA
VEG18559.1\|1532341_1532866_-	family transcriptional regulator PadR	NA	NA	NA	NA
VEG18561.1\|1532912_1533629_-	DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA
VEG18563.1\|1533631_1534342_-	short-chain dehydrogenase/reductase sdr	A0A0K0KVL6	Prochlorococcus_phage	1.9e-11	27.8
VEG18565.1\|1534497_1535856_-	Na+ driven multidrug efflux pump	NA	NA	NA	NA
VEG18566.1\|1535929_1538437_-	excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	3.7e-110	34.9
VEG18568.1\|1538737_1539049_-	serine/threonine protein kinase	NA	NA	NA	NA
VEG18570.1\|1539202_1539382_-	Uncharacterised protein	NA	NA	NA	NA
VEG18572.1\|1539651_1540803_+	protein	NA	NA	NA	NA
VEG18574.1\|1540992_1542036_-	alcohol dehydrogenase	NA	NA	NA	NA
VEG18576.1\|1542105_1542249_-	MerR family transcriptional regulator	NA	NA	NA	NA
VEG18578.1\|1542399_1543098_-	orotate phosphoribosyltransferase PyrE	NA	NA	NA	NA
VEG18580.1\|1543119_1544067_-	dihydroorotate dehydrogenase, catalytic subunit	NA	NA	NA	NA
VEG18582.1\|1544069_1544900_-	dihydroorotate dehydrogenase electron transfer subunit PyrK	NA	NA	NA	NA
VEG18584.1\|1545032_1545998_-	orotidine 5'-phosphate decarboxylase PyrF	NA	NA	NA	NA
VEG18586.1\|1546068_1547493_-	dihydroorotase PyrC	NA	NA	NA	NA
VEG18588.1\|1547601_1548021_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
VEG18590.1\|1548020_1549016_-	aspartate carbamoyltransferase	M1HQL8	Paramecium_bursaria_Chlorella_virus	2.2e-53	44.7
VEG18592.1\|1549123_1552222_-	glutamate-ammonia-ligase adenylyltransferase glnE	NA	NA	NA	NA
VEG18594.1\|1552303_1552636_+	Uncharacterised protein	NA	NA	NA	NA
VEG18596.1\|1552752_1553601_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA
VEG18598.1\|1553658_1555965_-	5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	NA	NA	NA	NA
1556208:1556267	attL	NA	NA	NA	NA
VEG18600.1\|1556456_1556603_+	Uncharacterised protein	NA	NA	NA	NA
VEG18602.1\|1556670_1556814_+	Uncharacterised protein	NA	NA	NA	NA
VEG18604.1\|1556810_1557005_+	Helix-turn-helix	NA	NA	NA	NA
VEG18606.1\|1557063_1557897_-	bacteriophage endolysin	I3NL82	Bifidobacterium_phage	2.9e-128	98.3
VEG18608.1\|1557880_1558306_-\|holin	phagic holin Spp1 family protein	I3NL83	Bifidobacterium_phage	1.6e-66	98.6
VEG18610.1\|1558536_1558944_-	phage minor structural protein	I3NL84	Bifidobacterium_phage	3.0e-70	100.0
VEG18612.1\|1558936_1559755_-\|tail	tail type measure protein	I3NL85	Bifidobacterium_phage	4.0e-82	100.0
VEG18614.1\|1559810_1561643_-\|tail	tail fiber protein	I3NL86	Bifidobacterium_phage	2.8e-208	96.2
VEG18616.1\|1561639_1562035_-	major factor subunit	I3NL87	Bifidobacterium_phage	1.4e-64	97.7
VEG18619.1\|1562045_1563908_-	gp4 phage minor structural protein	I3NL88	Bifidobacterium_phage	0.0e+00	98.1
VEG18621.1\|1563909_1564689_-	3-hydroxy-3-methylglutaryl CoA synthase	I3NL89	Bifidobacterium_phage	7.9e-144	97.2
VEG18623.1\|1564685_1567820_-\|tail	TP901 family phage tail tape measure protein	I3NL90	Bifidobacterium_phage	0.0e+00	98.9
VEG18625.1\|1567830_1568127_-\|terminase	phage terminase protein large subunit-like protein	I3NL91	Bifidobacterium_phage	6.4e-54	100.0
VEG18627.1\|1568189_1568696_-	DNAase primase	I3NL92	Bifidobacterium_phage	3.8e-83	98.2
VEG18629.1\|1568790_1569333_-	gp28	I3NL93	Bifidobacterium_phage	1.0e-94	99.4
VEG18631.1\|1569406_1569817_-	transcriptional regulator	I3NL94	Bifidobacterium_phage	8.5e-73	100.0
VEG18633.1\|1569813_1570242_-	Uncharacterised protein	I3NL95	Bifidobacterium_phage	1.4e-73	100.0
VEG18635.1\|1570231_1570666_-	phage associated protein	I3NL96	Bifidobacterium_phage	1.4e-44	98.9
VEG18637.1\|1570662_1571160_-	Uncharacterised protein	I3NL97	Bifidobacterium_phage	4.9e-91	99.4
VEG18639.1\|1571173_1571608_-	Head fiber protein	I3NL98	Bifidobacterium_phage	2.0e-64	98.6
VEG18641.1\|1571607_1572564_-\|capsid	major capsid subunit gp9	I3NL99	Bifidobacterium_phage	3.6e-175	99.4
VEG18643.1\|1572593_1573157_-	Uncharacterised protein	I3NLA0	Bifidobacterium_phage	8.4e-79	86.7
VEG18645.1\|1573464_1573725_-	Uncharacterised protein	I3NLA1	Bifidobacterium_phage	1.8e-44	100.0
VEG18647.1\|1573721_1574936_-	gp4 phagic protein	I3NLA2	Bifidobacterium_phage	2.2e-241	100.0
VEG18649.1\|1574919_1576326_-\|portal	portal gp5	I3NLA3	Bifidobacterium_phage	5.2e-279	99.4
VEG18651.1\|1576319_1578122_-\|terminase	phage terminase protein large subunit TerL	I3NLA4	Bifidobacterium_phage	0.0e+00	100.0
VEG18653.1\|1578121_1578511_-	gp25	I3NLA5	Bifidobacterium_phage	1.4e-69	100.0
VEG18655.1\|1578530_1579118_-	gp60	I3NLA6	Bifidobacterium_phage	1.5e-115	100.0
VEG18657.1\|1579403_1579772_-	gp4	I3NLA7	Bifidobacterium_phage	1.5e-36	98.6
VEG18659.1\|1579881_1580010_+	Uncharacterised protein	I3NLA8	Bifidobacterium_phage	8.0e-14	92.9
VEG18661.1\|1580074_1580233_+	Uncharacterised protein	I3NLA9	Bifidobacterium_phage	8.7e-18	90.4
VEG18663.1\|1580222_1580426_+	g28 phagic protein	I3NLB0	Bifidobacterium_phage	7.2e-33	100.0
VEG18665.1\|1580578_1580746_-	transcriptional regulator	I3NLB1	Bifidobacterium_phage	4.6e-25	100.0
VEG18669.1\|1580747_1581158_-	phage protein	I3NLB2	Bifidobacterium_phage	3.5e-74	99.3
VEG18674.1\|1581154_1581370_-	YcfA-like protein	I3NLB3	Bifidobacterium_phage	2.0e-33	98.5
VEG18679.1\|1581384_1582134_-	Uncharacterised protein	I3NLB4	Bifidobacterium_phage	2.2e-143	97.2
VEG18684.1\|1582177_1582375_-	Uncharacterised protein	I3NLB5	Bifidobacterium_phage	4.7e-29	100.0
VEG18690.1\|1582377_1582683_-	Uncharacterised protein	I3NLB6	Bifidobacterium_phage	6.8e-51	100.0
VEG18694.1\|1582679_1582958_-	Uncharacterised protein	I3NLB7	Bifidobacterium_phage	4.9e-48	100.0
VEG18696.1\|1582954_1583536_-	oligoribonuclease Orn	I3NLB8	Bifidobacterium_phage	4.2e-110	99.5
VEG18698.1\|1583532_1583937_-	gp77 phage protein	I3NLB9	Bifidobacterium_phage	5.8e-82	100.0
VEG18700.1\|1583933_1584125_-	Uncharacterised protein	I3NLC0	Bifidobacterium_phage	3.3e-27	100.0
VEG18702.1\|1584121_1585015_-	cryptic prophage protein	I3NLC1	Bifidobacterium_phage	5.7e-146	87.9
VEG18704.1\|1585011_1586409_-	chromosome partitioning protein ParB	I3NLC2	Bifidobacterium_phage	3.1e-276	99.8
VEG18706.1\|1586427_1586958_-	Ssb Single-strand DNA-binding protein	I3NLC3	Bifidobacterium_phage	2.5e-93	99.4
VEG18708.1\|1586957_1587302_-	Uncharacterised protein	I3NLC4	Bifidobacterium_phage	3.3e-54	94.7
VEG18710.1\|1587579_1587816_-	Uncharacterised protein	I3NLC5	Bifidobacterium_phage	3.6e-36	96.1
VEG18712.1\|1587812_1588028_-	Uncharacterised protein	I3NLC6	Bifidobacterium_phage	1.3e-19	98.0
VEG18714.1\|1588056_1588290_-	Uncharacterised protein	I3NLC7	Bifidobacterium_phage	8.0e-36	97.4
VEG18716.1\|1588409_1588652_+	Uncharacterised protein	I3NLC8	Bifidobacterium_phage	6.4e-28	96.9
VEG18718.1\|1588933_1589389_+	Uncharacterised protein	I3NLC9	Bifidobacterium_phage	2.5e-65	99.1
VEG18720.1\|1589536_1590331_-	phage antirepressor protein	I3NLD0	Bifidobacterium_phage	1.6e-123	85.8
VEG18722.1\|1590355_1590847_+	Uncharacterised protein	I3NLD1	Bifidobacterium_phage	1.5e-15	69.8
VEG18724.1\|1590690_1591191_-	Uncharacterised protein	NA	NA	NA	NA
VEG18726.1\|1591231_1591477_-	the helix-turn-helix motif	I3NLD2	Bifidobacterium_phage	4.2e-35	98.8
VEG18728.1\|1591600_1592002_+	Uncharacterised protein	I3NLD3	Bifidobacterium_phage	5.0e-17	67.6
VEG18730.1\|1592046_1593075_+	protein	Q9JMN3	Wolbachia_phage	2.4e-71	42.6
VEG18732.1\|1593199_1593706_+	Domain of uncharacterised function (DUF955)	I3NLD5	Bifidobacterium_phage	8.7e-51	83.8
VEG18734.1\|1593769_1594261_-	Uncharacterised protein	NA	NA	NA	NA
VEG18736.1\|1594257_1594785_-	Domain of uncharacterised function (DUF955)	Q854W5	Mycobacterium_virus	1.6e-18	38.9
VEG18738.1\|1594874_1596095_-\|integrase	integrase/recombinase	I3NLE2	Bifidobacterium_phage	4.6e-239	98.0
VEG18740.1\|1596350_1596908_-	phosphohistidine phosphatase	NA	NA	NA	NA
VEG18743.1\|1597027_1598128_-\|tRNA	tRNA (adenine-N(1)-)-methyltransferase	NA	NA	NA	NA
VEG18745.1\|1598368_1599289_+	lipase	NA	NA	NA	NA
VEG18747.1\|1599394_1599631_+	chloramphenicol-sensitive protein RarD	NA	NA	NA	NA
VEG18749.1\|1599691_1600210_+	RarD protein	NA	NA	NA	NA
VEG18751.1\|1600471_1600669_-	gp2 phage-like protein	A0A097BY73	Enterococcus_phage	4.6e-16	65.2
VEG18753.1\|1600734_1603212_-	Type I restriction-modification system DNA methylase	NA	NA	NA	NA
VEG18755.1\|1603369_1604269_-	Type IV secretory pathway, VirB4 components	NA	NA	NA	NA
VEG18756.1\|1604591_1605263_-	Domain of uncharacterised function DUF87	NA	NA	NA	NA
VEG18758.1\|1605265_1606288_-	Uncharacterised protein	NA	NA	NA	NA
VEG18760.1\|1606427_1607405_+	Uncharacterised protein	NA	NA	NA	NA
VEG18762.1\|1607401_1607737_+	type III restriction system endonuclease	A0A2H4UUH6	Bodo_saltans_virus	1.1e-17	45.6
VEG18764.1\|1608077_1608365_+	type III restriction system endonuclease	F2Y298	Organic_Lake_phycodnavirus	1.1e-07	32.5
VEG18766.1\|1608364_1611724_+	type III restriction system endonuclease	NA	NA	NA	NA
VEG18768.1\|1611808_1612069_-	Uncharacterised protein	NA	NA	NA	NA
VEG18770.1\|1612120_1612339_-	Uncharacterised protein	NA	NA	NA	NA
VEG18772.1\|1613592_1613784_+\|transposase	IS1557 family transposase	NA	NA	NA	NA
VEG18774.1\|1613850_1614855_+\|transposase	IS1557 family transposase	NA	NA	NA	NA
1615884:1615946	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134344

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection