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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LR134346 Taylorella equigenitalis strain NCTC11184 genome assembly, chromosome: 1 1 crisprs cas3,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh 0 5 4 2

Results visualization

1. LR134346
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR134346_1 194996-197549 TypeI NA
38 spacers
cas3,cas2,cas1,cas4,cas7,cas8c,cas5

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LR134346_1 1.30|196953|34|LR134346|CRISPRCasFinder,CRT,PILER-CR 196953-196986 34 CP024685 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence 288796-288829 7 0.794
LR134346_1 1.33|197152|34|LR134346|CRISPRCasFinder,CRT,PILER-CR 197152-197185 34 CP024685 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence 288796-288829 7 0.794
LR134346_1 1.30|196953|34|LR134346|CRISPRCasFinder,CRT,PILER-CR 196953-196986 34 NZ_CP012100 Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence 342046-342079 8 0.765
LR134346_1 1.30|196953|34|LR134346|CRISPRCasFinder,CRT,PILER-CR 196953-196986 34 NZ_CP029455 Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence 153352-153385 8 0.765
LR134346_1 1.33|197152|34|LR134346|CRISPRCasFinder,CRT,PILER-CR 197152-197185 34 NZ_CP012100 Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence 342046-342079 8 0.765
LR134346_1 1.33|197152|34|LR134346|CRISPRCasFinder,CRT,PILER-CR 197152-197185 34 NZ_CP029455 Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence 153352-153385 8 0.765
LR134346_1 1.36|197351|34|LR134346|CRISPRCasFinder,CRT,PILER-CR 197351-197384 34 NZ_CP026693 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP1, complete sequence 97774-97807 8 0.765
LR134346_1 1.4|195227|34|LR134346|CRISPRCasFinder,CRT,PILER-CR 195227-195260 34 MF403008 Agrobacterium phage Atu_ph07, complete genome 266155-266188 9 0.735
LR134346_1 1.8|195490|34|LR134346|CRISPRCasFinder,CRT,PILER-CR 195490-195523 34 MF403008 Agrobacterium phage Atu_ph07, complete genome 266155-266188 9 0.735

1. spacer 1.30|196953|34|LR134346|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 7, identity: 0.794

atattattttcaactaacaagtttt---taatctcag	CRISPR spacer
atattcatttcaactaacaagttttctataaatt---	Protospacer
*****  ******************   *** .*   

2. spacer 1.33|197152|34|LR134346|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 7, identity: 0.794

atattattttcaactaacaagtttt---taatctcag	CRISPR spacer
atattcatttcaactaacaagttttctataaatt---	Protospacer
*****  ******************   *** .*   

3. spacer 1.30|196953|34|LR134346|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagttttt----aatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatt----	Protospacer
*****  ******************.    ***.    

4. spacer 1.30|196953|34|LR134346|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagtttttaatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatg	Protospacer
*****  ******************. **    *

5. spacer 1.33|197152|34|LR134346|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagttttt----aatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatt----	Protospacer
*****  ******************.    ***.    

6. spacer 1.33|197152|34|LR134346|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 8, identity: 0.765

atattattttcaactaacaagtttttaatctcag	CRISPR spacer
atattcatttcaactaacaagttttctatgaatg	Protospacer
*****  ******************. **    *

7. spacer 1.36|197351|34|LR134346|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026693 (Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP1, complete sequence) position: , mismatch: 8, identity: 0.765

gagaattaatcagacagcccgaat---ctattcaagc	CRISPR spacer
aagaattaatcaaacagccagaatcggctatttt---	Protospacer
.***********.****** ****   *****.    

8. spacer 1.4|195227|34|LR134346|CRISPRCasFinder,CRT,PILER-CR matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 9, identity: 0.735

ccaattagtgctttttctattcgatgttttttac	CRISPR spacer
ccaattaatgatttttctattcgatcacctgtga	Protospacer
*******.** **************  ..* *. 

9. spacer 1.8|195490|34|LR134346|CRISPRCasFinder,CRT,PILER-CR matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 9, identity: 0.735

ccaattagtgctttttctattcgatgttttttac	CRISPR spacer
ccaattaatgatttttctattcgatcacctgtga	Protospacer
*******.** **************  ..* *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 220927 : 228788 11 Synechococcus_phage(28.57%) NA NA
DBSCAN-SWA_2 235486 : 243063 9 uncultured_marine_virus(16.67%) NA NA
DBSCAN-SWA_3 303951 : 315022 9 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_4 988387 : 995233 7 uncultured_Mediterranean_phage(33.33%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
LR134346.1|VEG32009.1|1212899_1213340_+|Uncharacterised-protein 1212899_1213340_+ 146 aa aa 86 NA NA No NA
LR134346.1|VEG32167.1|1324138_1324579_-|Uncharacterised-protein 1324138_1324579_- 146 aa aa 86 NA NA No NA