CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134348	Bifidobacterium breve strain NCTC11815 genome assembly, chromosome: 1	3 crisprs	cas3,WYL,c2c9_V-U4	1	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134348_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134348_2

2008985-2009131

Orphan

Consensus_repeat	Method
AATCTCCTAAAATCCTGTCACTAAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR134348_2

>merge|LR134348|2|2008985-2009131|CRISPRCasFinder
TTCGTCCTAAAATTCTGTCACTGAGTCAAAGCCAATGACAGATATTTAGGAAACCAACCCCAATCTCCTAAAATCCTGTCACTAAGACTCACTTAGCGACAGTAATTTAGGACGACTGGGATAATCTCCTAAAATCCTGTCGCTAAG

>LR134348|2|2|2008985-2009131|CRISPRCasFinder
TTCGTCCTAAAATTCTGTCACTGAG	TCAAAGCCAATGACAGATATTTAGGAAACCAACCCC
AATCTCCTAAAATCCTGTCACTAAG	ACTCACTTAGCGACAGTAATTTAGGACGACTGGGAT
AATCTCCTAAAATCCTGTCGCTAAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134348.1\|VEG22474.1\|2011971_2013177_-\|class-I-and-II-aminotransferase	unknown	unknown	gnl\|CDD\|235596
LR134348.1\|VEG22475.1\|2013318_2014581_+\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|213024
LR134348.1\|VEG22479.1\|2017947_2018256_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
LR134348.1\|VEG22469.1\|2007489_2008182_-\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
LR134348.1\|VEG22470.1\|2008197_2008629_-\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
LR134348.1\|VEG22473.1\|2011414_2011642_-\|Preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
LR134348.1\|VEG22480.1\|2018442_2021538_-\|ribonuclease-E/G-family-protein	unknown	unknown	gnl\|CDD\|273254
LR134348.1\|VEG22478.1\|2017673_2017925_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
LR134348.1\|VEG22468.1\|2006305_2007217_+\|regulator-of-polyketide-synthase-expression	unknown	unknown	gnl\|CDD\|225306
LR134348.1\|VEG22471.1\|2009437_2010199_+\|protein	unknown	unknown	unknown
LR134348.1\|VEG22466.1\|2003044_2003932_-\|biotin/lipoate-A/B-protein-ligase-family-protein	unknown	unknown	gnl\|CDD\|223417
LR134348.1\|VEG22465.1\|2002443_2003043_+\|BioY-family-protein	unknown	unknown	gnl\|CDD\|376871
LR134348.1\|VEG22467.1\|2004175_2006281_+\|protein	unknown	unknown	unknown
LR134348.1\|VEG22462.1\|1988926_1998409_-\|beta-ketoacyl-synthase,-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|227315
LR134348.1\|VEG22476.1\|2014676_2015777_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
LR134348.1\|VEG22463.1\|1998448_2000071_-\|carboxyl-transferase-domain-protein	unknown	unknown	gnl\|CDD\|227136
LR134348.1\|VEG22477.1\|2015915_2017607_-\|Obg-family-GTPase-CgtA	unknown	unknown	gnl\|CDD\|237045
LR134348.1\|VEG22461.1\|1987872_1988112_+\|flavin-reductase-domain-protein	unknown	unknown	unknown
LR134348.1\|VEG22472.1\|2010554_2011382_-\|transcription-termination/antitermination-factor-NusG	unknown	unknown	gnl\|CDD\|180161
LR134348.1\|VEG22464.1\|2000063_2001932_-\|acetyl/propionyl-CoA-carboxylase-alpha-subunit	unknown	unknown	gnl\|CDD\|227111

Protein	Function_ID	Function_description	E-value
LR134348.1\|VEG22474.1\|2011971_2013177_-\|class-I-and-II-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
LR134348.1\|VEG22475.1\|2013318_2014581_+\|polysaccharide-deacetylase	gnl\|CDD\|213024	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins. This family contains an uncharacterized protein yadE from Escherichia coli and its bacterial homologs. Although its molecular function remains unknown, yadE shows high sequence similarity with the catalytic NodB homology domain of outer membrane lipoprotein PgaB and the surface-attached protein intercellular adhesion protein IcaB. Both PgaB and IcaB are essential in bacterial biofilm formation.	1.49426e-61
LR134348.1\|VEG22479.1\|2017947_2018256_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	4.17736e-35
LR134348.1\|VEG22469.1\|2007489_2008182_-\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	1.72993e-143
LR134348.1\|VEG22470.1\|2008197_2008629_-\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	8.69761e-91
LR134348.1\|VEG22473.1\|2011414_2011642_-\|Preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	3.68916e-12
LR134348.1\|VEG22480.1\|2018442_2021538_-\|ribonuclease-E/G-family-protein	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	1.38642e-152
LR134348.1\|VEG22478.1\|2017673_2017925_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	5.68869e-49
LR134348.1\|VEG22468.1\|2006305_2007217_+\|regulator-of-polyketide-synthase-expression	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.51403e-16
LR134348.1\|VEG22476.1\|2014676_2015777_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	1.89649e-174
LR134348.1\|VEG22466.1\|2003044_2003932_-\|biotin/lipoate-A/B-protein-ligase-family-protein	gnl\|CDD\|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	9.24621e-32
LR134348.1\|VEG22465.1\|2002443_2003043_+\|BioY-family-protein	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	6.07077e-28
LR134348.1\|VEG22462.1\|1988926_1998409_-\|beta-ketoacyl-synthase,-N-terminal-domain-protein	gnl\|CDD\|227315	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].	0
LR134348.1\|VEG22463.1\|1998448_2000071_-\|carboxyl-transferase-domain-protein	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
LR134348.1\|VEG22477.1\|2015915_2017607_-\|Obg-family-GTPase-CgtA	gnl\|CDD\|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0
LR134348.1\|VEG22472.1\|2010554_2011382_-\|transcription-termination/antitermination-factor-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	3.58026e-66
LR134348.1\|VEG22464.1\|2000063_2001932_-\|acetyl/propionyl-CoA-carboxylase-alpha-subunit	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0

>LR134348.1|VEG22470.1|2008197_2008629_-|50S-ribosomal-protein-L11
MAPKKKVSALIKLQIQAGKANPAPPLGPALGSHGVNIMDFCKAYNAQTQDKMGQVIPVEITVYEDRSFTFVLKTPPAAALLKKAAGIEKGTENPLTHKVGSVTKAQVREIAETKMEDLSARDIEAGMKIIEGTARSMGITVTD
>LR134348.1|VEG22469.1|2007489_2008182_-|50S-ribosomal-protein-L1
MVKRSKKYREAAERVDRNNLYTANEAIALLKSMPSYNFDQTVEAVFRLSVDPRKADQLVRGTVNLPHGTGKTAKVLVFARGPKATEATEAGADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPSTVKGRYLTKATITSTMNPGVPVDPNTLA
>LR134348.1|VEG22468.1|2006305_2007217_+|regulator-of-polyketide-synthase-expression
MPAESLSSAGTANARLVYMSDFLELLAADAANSSDFTDRSGISATDRARTVLFECLFNHLADDRVASLFTILGFEHDFTCYAIAGYPARSAARSRVDIEKIVADFGGTCLTAERPITGLTGADNGTGRTAVVALIRPVGAATPEIICNTIAPAFDADRPIALGPQRTGAEGAMRSVQATLYCLKAAPALAATAQSLPRPLRTDDALPERALIGDEDARDELIRVVYGSLTAAGPDDPTLLTVSTFLKYGGSLETCAKELNVHPNTIRYRLKRAAESTGWDATDPREAYVLITAIALGRMATAQ
>LR134348.1|VEG22467.1|2004175_2006281_+|protein
MTSPASSLPAAAAHPRLARVGAAARWTLAVLACLWLALCTAVGPLYWDFENGTIANWNWTNTAFFVLSFAIYLGLIVIMVRFAAGQRVLPRAISGRLSRAGQQHSNQDLKPSQSQSVVADSNVSKRHATAASRFATLGRWITRGTNRFWKLALVFFIGWLWVPTTLLSAFGADIRSQIREFSWAWNQWTGLQQPYIGFFSFVPMDIYPTAHYMWPPDSTYLTDQHNVVLTVFYGAVAAFSRYLTGSNDAGIVALAAGQMLLAVFCCAATANRFLNRPWMGVAQSTKDKNGSSTSTGSVSSTTSARIAQDSAPQLAGGRARFLILVFFLCCPLAVFATISITKSPLFAFSFVWWFGIWYELTQTWKPAGKRKGLTATAPIRLPRHSFVAFVLSTAVMLISAKYAWYIIALQIVLALIADRRRWTTYVVALLIPTMLIHGGISLAISSGAIIGGDPIESRGVQLQMIARVASRNPEGISEEAKKNLSDVFNLDQMADAYSQQDADPVKSSGIQAKKVSYKWRTVTPEDMTNFNKAWFEIVKDNPVIALDALLAKCFGYFNVTDQPYVSMDYYVTSDYVQKNSTWIKSYNHNWRERITGFTRSWGKIPVIGWITHGNFYVVMTLLIGAAEVIRRRWLTLMTHIPLLLLMGVMITAPANNFERHMLPVAFVFGFVVLTYWRESLAERRIARQAQSSASTTTTLPQ
>LR134348.1|VEG22466.1|2003044_2003932_-|biotin/lipoate-A/B-protein-ligase-family-protein
MMIALQAATPQLPRTKAVADQVVAVGETDSTNALAARMIGDGSLTLPECKGGTLAVGVVVTDWQSAGRGRNGHTWISQPGRCSTMSYAVRIPRAIATDESVNGWLQMIAGLVTLDALNGMIKEYGAAPNKQDCFLELKWPNDVFCHGLKLGGLLSELVLLPDGEADDDVVVVFGVGLNLALGASRLPTPQSTSLQLHVSGLPSFNEMRDAVAEREVEGFRERLAAFIADPHGQAEALREEMKAVCWARGRQVEAHFTDGTTLIGEAIGLNEDASLILRTEDGTDHTVRTADVGVL
>LR134348.1|VEG22465.1|2002443_2003043_+|BioY-family-protein
MQTSHTTSSTAATASLGRRIVAASWKPALFAVLMWLSAAAGAIPIPGTPVPITLQTFVVMLAGLMLPWRQAGSAVAAYLAAGAVGLPVFAGGASTMALVGPSAGFLFGFLPGVIVIALLRGKANTSSASAAALTAGRYLLTALVGGVVVVYALGFVIQSALTGVPIAAVALASMGFVAGDAIKAVVASLAAAGLSKLGR
>LR134348.1|VEG22464.1|2000063_2001932_-|acetyl/propionyl-CoA-carboxylase-alpha-subunit
MAHIVKKLLIANRGEIALRVVRTAKEMGISTVAVYSEQDRNSRYVDMADEAYLLSGDTYKDTYLNEDLLIDILHKTGADAVHPGYGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVALRAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGDLKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPAPFLPEEIVSTLEEYSRRLFTTVGYVGLGTCEFMVTPNGKVYFLEVNPRLQVEHTVSEEVSGLDLVREQLNIAAGGELTRAPEPRGHSFELRITSEDPATNLTPGSGTLEKIQWPAGPGVRIDTGVEQGDTISPKFDSMMGKVIVTAQNRLDAVARVRRVLDELVIEGVPTPIPLFKEIFRNDDFTAENGHPFSVSTKWLERTYLNRTPASASSGQPASLAGAAAPAAPDKSTSETFVIEMNNRRVKLTVPLDIVENITGSARARGAKRPTQPLRGAGLHNVASGAAKANDGAKSGVIASPMQAVVTRINVSEGQQVAKGDLLVVLESMKMENYVYAPAAGEVKKIFVGPADGVEAGDTLVTLDVAKAEDSKKEGGND
>LR134348.1|VEG22463.1|1998448_2000071_-|carboxyl-transferase-domain-protein
MTDIMDSPAVNAVTATSATNASQPPAHQPLRTAVVKAAELARAAEERARDKQHAKGKKTARERLDLLFDTGTFEEIGRFQGGNIAGGNAGAAVITGFGQVYGRKVAVYAQDFSVKGGTLGTAEGEKICRLMDMAIDLKVPIVAIVDSGGARIQEGVAALTQYGRIFRKTCEASGFVPQLSLILGPCAGGAVYCPALTDLIIMTRENSNMFVTGPDVVKASTGETISMADLGGGEVHNRVSGVAHYLGEDESDAIDYARTVLAYLPSNSESKPPVYAYAATRAERETAKRLATIVPANERQPYDMLEVIRCIVDYGEFVQVQELFGASALVGFACIDGKPVGIVANQPNVLAGILDVDSSEKVARFVRLCDAFNLPVVTLVDVPGYKPGSDQEHAGIIRRGAKVIYAYANAQVPMVTVVLRKAFGGAYIVMGSKAIGADLNFAWPSSQIAVLGAAGAVNIIHRHDLAKAKASGQDVDALRAKYIKEYETSTVNANLSLEIGQIDGMIDPEQTREVIVESLATLATKRRIKRTTKHHGNQPL
>LR134348.1|VEG22462.1|1988926_1998409_-|beta-ketoacyl-synthase,-N-terminal-domain-protein
MSTFFLNRLTTEPHALAFAGQSTPWPVALADQTTDPSLDEALRGHVAAANRLLSPAAADLLATTGRPVDLFGFTPNPAHLSAAADATASVEGVALTQLGALLDLEHLGYSVAAAKPVAVLGHSQGVLAVHMTRAIEAAGSIEAAGKTLDEILAVAALIGAAGTRRVRELGLNPKYGEASPMLSVKGATREQVEALVKRVNNARGPISIAVTNSDNHHVLSGYPEDLAALAFETEREHKHQAKLREQKLHGGTVFNPTLEYLEVTLPFHSPLMAEAVEQTVSWAGACGFDQDRTRALAEEVLLNHVDWNARVKALFNAADPAKLWIVDLGPGNTLGKLIGNVVQGTGIGVVEATTLAERSALSTLESEPERTQNWKALAPRVIETPAGAKLVTKFSKLTGKPPVLLPGMTPTTVEPEIVAAAANAGYWAELAGGGQVTAEVFDRHIAALEDELEEGRTVEFNAMFMDRYLWNLQFGSSRIVPKKRASGAPIDGVVVSAGIPELDEAVELIKNLQADGLPYVSFKPGTVDQIRQVVRIAKAVAPTTIMIQVEGGEAGGHHSWEALDDLLAATYAEVRACDNLVLVAGGGIGTPERAADYISGQWAHAYGLPDMPVDGVLIGTAAMTAKEAHTSPEVKQMLVKTPGIPADAKSDDVFAPQAAHWVPSGKSVGGMSSGLSHLHADIYELENDSAECGRLLVRVMKHPEELDSRRKEIIEALNKTAKPYFGDLASMTYLEWAQRFAELAFPWADPTYADRFQHLLQRIEARANDTDSGEFTSKLFAADGVSADEAAAAGLLTRDGILADPAPALEKLALAYPQTAELKVVPADVAWFPVLVREYPKPMPFVPVIDNDLLRWWGQDQLWQSEDQRYSADSVRAIPGPISVAGITTVDEPIADILGRFENAAIERVKAEQNASESNDFAALGEAVSAEDFIRKSPNISWVGHIADNPAYGTALGDQYYEIRAFDAAAGKYDLDIHLDTYWDNDPDGGTSKHAVRDIVIPLIVEGTEPGRVPVVDRERLIPDVYAMLAATAGIGNTAITGDKLTAMPTLSVPSDEGAVTANAVTEGETAQNRPFGTATATYTLSANLGFDHEAATGAALPAALQPSRIAPDALVGPAWPAIYTALGSVYVKGYPVIEGLLNAVHLDHLIELEVNEEDLLKHTGETITLKSWAEDYFESASGRVVTIHVTHTAADGTLLARETERFAIRGRVYSDALPADAPEFGDAEHAEVAPTPRRLLRRVKVVAPHDMTAFARTSGDFNPIHTSTRGARISGLAAPLVHGMWLSATAQHAVQALDEKGARYEIAGWTYNMYGMVQLDDTVEISVERVGKVRHGGMTLEVTCRIDGQLVSRGTALVRAPRAAFVYPGQGIQKQGMVLDERAKSAAARDVWERADKLTRAKLGFSILGLVRDNPKELTANGVTYRHPEGLLNLTQFTQVALATVAFAQTARLREAGADVWPAYFAGHSLGEYNALSAFADVIPLETVLELVFHRGSTMHHLIERDAQGRSNYRMGALRPNQFGVDDAHVKEYVESVAKASGEFLEIVNYNLAGQQYAIAGTIAGLKALKADSARRVAAFGGKPAFMLVPGIDVPFHSTLLRKGVPEFRDKLDALLPAYIDYRGRLVDRYIPNLVASPFEMTKEFAAKILEVVPSERIKAALDDPAVWDSYAADDQKLGRLLLTELLSWQFASPVRWIETQALLFGKREQGGLGVEEYVEVGLGNAPTLANLGAKTLRLPEFAGNNTVVYNVGRDEGRVYMTDTDSLVPDDEPEETAAPVETAPAGGSAVAKLGSSAAADAAPAAAAAPAPAAPVSAAPAGAPSGAAVADLPFKASDGIGVLMAYAAKVRLDQIGSNDTTDTLTNGVSSRRNQLLMDISSELGVASVDGAAEATLDKLAQIVNKAAPNYKPFGAVLSEALRDRLRSLFGAAGVKQQYIRDRVANVWQLGEGWVASVLAALLLDTREGSSSRGGDLAKLPTAAVQNKPEADKLIDAAVEVVAQLKGVAVALPSAGGAAGGAVVDSAALDAFAEKVTGSNGVLAATARFVLNELGVAAPAPEESEDENAAVVAAVEAELGSDWPKQVAPRFDANKAILFDDRWASAREDLARAYYDNDPAALNGSFIGLGKTIAAEAQWFADKSDNDELKDAFQKAASEALESVTSDKNASRYANDIAIVTGVSPNSIAAQVVEGLLAGGATVVATSHSFKPSIKAWAKQAYREHATGNAKLWLVPANLSSYRDVDALVDWVGHEQKKTSGATTTILKPAWEPTLFFPFAAPPVHGTLADSGDLFESQARLMLWGVERAIAGFSHIGADTNVQHKLHVVLPGSPNRGVFGGDGAYGEVKSAFDAIVNRARAEKVWSSRVTFAHPKIGWVRGTGLMGGNDPLVAVVERHGIHTYSTAQIAAKLLDLCTTESREQALKAPLDVDLTGGLGSEPIDIKALRAEAMADAEKEASSEKVAIEGEKPEGGAAGSTLKALPTPIVTKQASVDLADWQNVTAKPKDEIVIVSVGELGPWGSGRTRTQAELGIHPDGTVDLSAGAVLELAWNMGLLTWADSPKPGWYDTDGNLVPEEDIAERYHDEVVARSGIRPFEEGMGDDYKDGADEEEAEVFLDHDVTFSVPTRDVAAEYVKLDEAHTTIAPDEESGEWNVTRHAGSMIRVPRRATMTRTVGGQFPKGFDPTRWGIPASMVGDVDKIALWNIVTTVDAYLGAGFTPAEILESIHPSLVASTQGTGFGGMMSMRKLYLDRFLNHEIPTDILQEALPNVVAAHVMQSYIGGYGNMIQPVSACATAAVSLEEGVDKIALGKADFVVTGAIDDIGVESVIGFGNMNATANSEEMYGKGIDARFFSRANDRRRGGFLESQGGGTILVTRGDIAEKLGLPVAAVVGFIHSYADGAHTSIPAPGLGALAAGLGGKDSKLVHDLAKLGVSADDIAVVSKHDTSTNANDPNESELHNTLAHAIGRTDGNPLFVISQKTLTGHAKGGACIFQVNGLTQLFKSGVIPANASLDCVDPKLQRDDHMVWVRKPLRIGGGEDEFGRETAGRPVKAGLATSLGFGHVSGFVALVHPGAFEAAVAKADGEAALEAWRERANARLAAGQRHLEEGMMGRAALYEPIDNRRFHEDHRGYDHHEVEKSMLLNPDARLGADGYYEA
>LR134348.1|VEG22461.1|1987872_1988112_+|flavin-reductase-domain-protein
MVGKKVALSAAAGQSAGAGTLAKLNEVLGFGKTELLPTDKQVGVALAPEAWGTGKLTLSDEDEARLAAEADAFLALVAE
>LR134348.1|VEG22471.1|2009437_2010199_+|protein
MHLIRALAKVHPTWTFAGLSAACVYQYEHSYSLHNGTVDIVSPKGANCGGASGLNRIYMARCSQYRCQGILVTSPARTLIDCASLPFDKALAIYDSALRLQHVTKLDVETLIVQTDCNETNVKRLLRYANPLRENGGESWAYARIRQLGFAEPLFQTEFDNPANPEMPYRVDFCWKLHDGRIIVVEYDGIAKYRDTSNPNRANLMAKFEYERQRDTNLKTQGVTSIKHLFYEDVSDLKRLNALLTAIGIPKIR
>LR134348.1|VEG22472.1|2010554_2011382_-|transcription-termination/antitermination-factor-NusG
MSDELNLENLDAALENVDAAADEAPVADAPAEAVESAEPVAEAPVASPETVAESAEEESEVNESEQAEETDAGQKAVDEFSKSLRTLDGKWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPGYVLIRMWPDENARRVVRETEGVTGFVGPSKDPAPLSRQEVVAMMAPMIASEALKAAGDKPAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFHQVQKLD
>LR134348.1|VEG22473.1|2011414_2011642_-|Preprotein-translocase-subunit-SecE
MAKTSANEKAVKPNVFMRIGLFIKQIIDELRKVVTPTAKELFFWSLAVFIFVLLLMALVTGMDFGLGKATLGIFG
>LR134348.1|VEG22474.1|2011971_2013177_-|class-I-and-II-aminotransferase
MAQWQILSDRINTVAPSATLAVDSKAKAMKATGLDVIGFGAGEPNFPTPANVVKAAADACLDPKNYKYTPTPGLPELREAIAAKVLRDSGYEVSADQVVVTNGGKQAVYEAFQILLNDGDEVIIPTPYWTSYPEAVKLADGVPVEVFAGADVNFEPSLEALEAARTERTKAIIVNSPNNPTGAVWKPETVEAIGRWAVEHHIWIISDEIYEHLNYDDARTTYIGAAVPECRDQLLVLNGVAKTYAMPGWRVGWMVAPAEVAKAATKLQGHMTSNVANISQRAALAAVSGPLDEVYEMRKAFDVRRRAIVAALNDIEGVYCPTPTGAFYAFADITALLGKPLGSNGTVCATSADFAAALLDEAHVAAVPGEAFGAPGYLRFSYALADDDLAEGMKRFKDWAK
>LR134348.1|VEG22475.1|2013318_2014581_+|polysaccharide-deacetylase
MAKHHESHGSRGTRRSTVEPRVAYSRHAETHSAHGSQLHYGQHASHRSAAAIAAQRTRRIAVLVVAAVVAVALVITVGVVAHGWFVRQSAPSMQQQLPTTAHKSLTRKTVPQLDPGNIVIGVNGSETTYVLKGEQYVEGGAHAIEPEDGVLTGNIVTTGTVDTNTPGDYTVQYTVHDSTGHEASATRTVKVVDTMDKQTGGIPVLMYHYVYDPANPPADVDANWIPTTSLEPQLQYLTQNNFYYPSWPEVRAFIDGKHSLPKNSIVMTFDDGEPHFFQYGSPLLAKYKVPATSFIIGADGEALNKMKTYATPYLEYESHSFDMHRAGGTVGHGGRISAMSHQEIVDDLKQSEQVTGSLQAFAYPFGDTTPDAIEAVRETGTLAAFTTQYGWADVGADPMNLPRVRIQGTGSLDTFIAAIQ
>LR134348.1|VEG22476.1|2014676_2015777_-|glutamate-5-kinase
MIAAAGTIVVKVGSSSLTQPSGHLDPDKLDALTAALAQVRLMGARVVLVSSGAIAAGFGPLGFDERPADVATQQATAAVGQGLLMARYEAAFGRFGIRVGQILITAEDTIRATQYRNVERTLDRLLDLGVVPIINENDSLASNEIRFGDNDRLSALVANLVRAEALVLLTDVDALYTAPPAQPGSRRVEYVPNVIDALGDIQVSGSGSKVGTGGMVTKLEAARVAAVSGIPTVLTCASNAGPAMMGDPVGTVFAPVKARGSSRRLWIGFAAEPRGTIVVDAGAAKAIRGGRASLLAAGALDVHGDFSAGDPVWIDDESGTHLARGLAGFDSEEIPQTLGRNTAQLKRFLGDQYAHPLVHRDNLVLV
>LR134348.1|VEG22477.1|2015915_2017607_-|Obg-family-GTPase-CgtA
MSDFVDRVTVHVRGGDGGNGSAGIRREKYKPLAGPNGGNGGDGGSVVFVADRNATSLLDYRFMPHRTAGNGTMGLGDNKDGSKGEDLILPVPCGTVVFEARGEQGKTKHPGEQLADLRHEGDRVVVAQGGAGGLGNIALANKTRRAPGFALLGELGEERDVILELKSIADVALVGFPSAGKSSLIAAMSAAKPKIADYPFTTLVPNLGVVIAGDSRYTIADVPGLIPGASEGKGLGLEFLRHIERTEIIAHVIDCATLEPDRDPMSDYQALENELALYADKLELPLGAIPIPERPRIVILNKIDVPEAKELAEFVRPEFEKLGLKVFEISTASHEGLKELNFALAELVHEMREEVASREEAEEEARVVIKPLERTGRRPRRADEGGNALDFTVERRELGNGEVFYEVRGAKPERWVMQTNFDNDEAVGYLADRLAKLGVEDELRRKGARPGDEIRIGRGDRMVEFDWDPTISAGAEMLDGSNLGARGKDLRLEEQDPRAHRRSNAERRAQYHEMMDARAAVRDAMMAERKAGHWADPTVDDDRHDETSLFGHGESADDSASEE
>LR134348.1|VEG22478.1|2017673_2017925_-|50S-ribosomal-protein-L27
MAHKKGASSSRNGRDSSPQYLGVKKFGGEAVVAGNIIVRQRGTNFHAGQNVGMGKDHTLFALADGSVKFGVRRDRKVVDVIAA
>LR134348.1|VEG22479.1|2017947_2018256_-|50S-ribosomal-protein-L21
MYAIVKAGGHQEKVEVGDTILVNRLDAKKGDTVEFPVALLVDGAKVTLAAADLAKVSVKAEVVNDEAKGPKINIQKYKNKTGVARRKGHRQPLTIVKITAIA
>LR134348.1|VEG22480.1|2018442_2021538_-|ribonuclease-E/G-family-protein
MQRAARSIVPTENREGFVGDETDNSTVSNTESQASGASEPNAEASQPTRRRRGGRRVVRGTGAAGASLELQVQEHAAPLFEAPALPDADASASAETTDNNASDDEKHPARRTRSRRSADNADYEDRPTRRRAVADDDDEPRPVRRRRTVSDDLEEDDERPIRRRRVASDDFDEDNDRLVRRRRSVIDDLEDDDAPRSSRRRTAVDDSDEDGDRPVRRRRSTTNDRDDRDDEPRSARRTRSRRSSEDAREENPDERVLDVIDALPAGHESARRGKPMTSLLFQEPVLPDMRRDDRDDEEDDGEQRSRSSRRSRAREDEADYEERPSRSRRSNRSDHGDHDDRDDHDDRDDSRNNRRRNEAQDDFDADDQSDSRRSRRSRRLNAQERRAAAEVEQIEEDLELDDITYSPIAEEENDEESDSTRTRSRRRRRRGSRNESGASNNDSESSENNGDDSRRRRDDRDERDRDDDEEQTVTRRRRRRRGGKNAESGDEQDDQQLTRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARRENVDRLMVVREKEHHTQISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYGRIEEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTVSADYDDPYALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNTEEE

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Crispr_ID: LR134348_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134348_3

2130541-2130625

Orphan

Consensus_repeat	Method
CCTTCCCGAATATGTACCACTGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134348_3

>merge|LR134348|3|2130541-2130625|CRISPRCasFinder
CCTTCCCGAATATGTACCACTGACAACGTCGTAGCGTCACATATTCAGGAAACAACCCCACACCTCCCGAATATGTACCACTGAC

>LR134348|3|3|2130541-2130625|CRISPRCasFinder
CCTTCCCGAATATGTACCACTGAC	AACGTCGTAGCGTCACATATTCAGGAAACAACCCCAC
ACCTCCCGAATATGTACCACTGAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134348.1\|VEG22564.1\|2125775_2126660_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|238889
LR134348.1\|VEG22561.1\|2121879_2123340_+\|efflux-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
LR134348.1\|VEG22575.1\|2139061_2139355_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134348.1\|VEG22568.1\|2132747_2134658_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|224055
LR134348.1\|VEG22570.1\|2135365_2136682_-\|aaa+-superfamily-atpase	unknown	unknown	gnl\|CDD\|224292
LR134348.1\|VEG22573.1\|2138137_2138527_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173866
LR134348.1\|VEG22558.1\|2116944_2117904_-\|L,D-transpeptidase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|341130
LR134348.1\|VEG22560.1\|2120069_2121476_-\|cell-envelope-related-transcriptional-attenuator	unknown	unknown	gnl\|CDD\|367673
LR134348.1\|VEG22569.1\|2135078_2135249_+\|ATPase	unknown	unknown	unknown
LR134348.1\|VEG22566.1\|2129529_2130489_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
LR134348.1\|VEG22574.1\|2138528_2138981_+\|bleomycin-hydrolase	unknown	unknown	gnl\|CDD\|238328
LR134348.1\|VEG22557.1\|2116022_2116739_-\|L,D-transpeptidase-catalytic-domain-containing-protein	unknown	unknown	unknown
LR134348.1\|VEG22565.1\|2126919_2129331_-\|potassium-transport-protein	unknown	unknown	gnl\|CDD\|376906
LR134348.1\|VEG22571.1\|2137034_2137289_-\|family-43-glycoside-hydrolase	unknown	unknown	gnl\|CDD\|350118
LR134348.1\|VEG22562.1\|2123336_2124521_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
LR134348.1\|VEG22572.1\|2137702_2138110_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173866
LR134348.1\|VEG22559.1\|2118000_2119794_-\|glycosyl-hydrolase-family-25	unknown	unknown	gnl\|CDD\|119376
LR134348.1\|VEG22567.1\|2130742_2132548_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|224055
LR134348.1\|VEG22576.1\|2139864_2141652_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237029
LR134348.1\|VEG22563.1\|2124881_2125646_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|129396

Protein	Function_ID	Function_description	E-value
LR134348.1\|VEG22564.1\|2125775_2126660_-\|glutamine-amidotransferase	gnl\|CDD\|238889	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	3.76045e-38
LR134348.1\|VEG22561.1\|2121879_2123340_+\|efflux-ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	9.09529e-11
LR134348.1\|VEG22568.1\|2132747_2134658_-\|ABC-transporter	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.38011e-172
LR134348.1\|VEG22570.1\|2135365_2136682_-\|aaa+-superfamily-atpase	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	7.92634e-27
LR134348.1\|VEG22573.1\|2138137_2138527_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173866	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold. LpqW is one of key players in synthesis and transport of the unique components of the mycobacterial cell wall which is a complex structure rich in two related lipoglycans, the phosphatidylinositol mannosides (PIMs) and lipoarabinomannans (LAMs). Lpqw is a highly conserved lipoprotein that transport intermediates from a pathway for mature PIMs production into a pathway for LAMs biosynthesis, thus controlling the relative abundance of these two essential components of cell wall. LpqW is thought to have been adapted by the cell-wall biosynthesis machinery of mycobacteria and other closely related pathogens, evolving to play an important role in PIMs/LAMs biosynthesis. Most of periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the LpqW protein. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	5.0957e-35
LR134348.1\|VEG22558.1\|2116944_2117904_-\|L,D-transpeptidase-catalytic-domain-containing-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.65635e-18
LR134348.1\|VEG22560.1\|2120069_2121476_-\|cell-envelope-related-transcriptional-attenuator	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	6.32681e-37
LR134348.1\|VEG22566.1\|2129529_2130489_-\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	8.56499e-81
LR134348.1\|VEG22574.1\|2138528_2138981_+\|bleomycin-hydrolase	gnl\|CDD\|238328	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure with the active sites imbedded in the central channel. The bacterial homolog of BH, called pepC, is a cysteine aminopeptidase possessing broad specificity. Although its crystal structure has not been solved, biochemical analysis shows that pepC also forms a hexamer. .	1.68954e-74
LR134348.1\|VEG22565.1\|2126919_2129331_-\|potassium-transport-protein	gnl\|CDD\|376906	pfam02705, K_trans, K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members.	0
LR134348.1\|VEG22571.1\|2137034_2137289_-\|family-43-glycoside-hydrolase	gnl\|CDD\|350118	cd09004, GH43_bXyl-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 alpha-L-arabinofuranosidases (BT3675;BT_3675) and (BT3662;BT_3662); includes mostly xylanases. This glycosyl hydrolase family 43 (GH43) subgroup includes enzymes that have been annotated as xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase, EC 3.2.1.8) activities, as well the Bacteroides thetaiotaomicron VPI-5482 alpha-L-arabinofuranosidases (EC 3.2.1.55) (BT3675;BT_3675) and (BT3662;BT_3662). It belongs to the glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) which includes family 43 (GH43) and 62 (GH62) families. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	6.77542e-27
LR134348.1\|VEG22562.1\|2123336_2124521_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.03621e-22
LR134348.1\|VEG22572.1\|2137702_2138110_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173866	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold. LpqW is one of key players in synthesis and transport of the unique components of the mycobacterial cell wall which is a complex structure rich in two related lipoglycans, the phosphatidylinositol mannosides (PIMs) and lipoarabinomannans (LAMs). Lpqw is a highly conserved lipoprotein that transport intermediates from a pathway for mature PIMs production into a pathway for LAMs biosynthesis, thus controlling the relative abundance of these two essential components of cell wall. LpqW is thought to have been adapted by the cell-wall biosynthesis machinery of mycobacteria and other closely related pathogens, evolving to play an important role in PIMs/LAMs biosynthesis. Most of periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the LpqW protein. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	8.56457e-30
LR134348.1\|VEG22559.1\|2118000_2119794_-\|glycosyl-hydrolase-family-25	gnl\|CDD\|119376	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.	1.54318e-68
LR134348.1\|VEG22567.1\|2130742_2132548_-\|ABC-transporter	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	9.82787e-175
LR134348.1\|VEG22576.1\|2139864_2141652_-\|methionine--tRNA-ligase	gnl\|CDD\|237029	PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.	0
LR134348.1\|VEG22563.1\|2124881_2125646_+\|HD-domain-containing-protein	gnl\|CDD\|129396	TIGR00295, Uncharacterized_protein_MJ0778, TIGR00295 family protein. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters. [Hypothetical proteins, Conserved].	3.35054e-14

>LR134348.1|VEG22566.1|2129529_2130489_-|TatD-family-hydrolase
MSKHHHRDRSWAPAPEPLPQDAQTIDNHTHVASVIPFARAMSHEAQEKGQPEVPVYDVDQLLAQAQAVGIGGIIDCGCELPHLMTAVQMALDHPGNVHAALAIHPNESVLHGHRGVPGPDGLPLKYKPYHDTSFEDALAEVHRLATTYPEQVVAIGETGMDLFRTGEGAKELQREAFRAHIALAKELNLPMQIHDRDSHREVIETLLADGAPERTVFHSYSGDREMGEIAREHGWYLSFSGTVSYKGNDGIRESMRIVGLDHAMVETDAPYLTPMPYRGRTNAPYMIPYTLRAMADTLDLPIADVARGTRNTTRVVYGV
>LR134348.1|VEG22565.1|2126919_2129331_-|potassium-transport-protein
MAESDKQAERAQKAAKPQKAQKTNAKAGANKAKAKQEEEALLRADTFTNAPKVSRRTLTKEEREAIAKQREAETREAEKIASASSKGRLGRWWARLQSGPDKVTWGMAIVALGVVYGDIGTSPLYTAQTFLAGQGGFGNVDREAVLGMLSLVFWSITLITTVKYVLIAMRIDNNGEGGIFALYSLIRKYGAWLAIPAMLGGAAFLADSVLTPAVSISSAVEGLQTLPPLEQLFDENPSLTLMITVVIIVILFSVQSRGTESIGKVFGSMVLVWFSFLAVVGVVNLNNDWSVFAALNPVYGVKFLFSPHNAAGIALMGTVFLSTTGAEALYSDMGHVGRGNIYFTWPFIKIALVLNYFGQGAWMLNNARNPQFNTMKSLNPFFQMMTPNVRYLAVILSVTAGVIASQALITGAFTMVSEATRLNWMPHLQVRYPARTRGQLYIPVVNGVLCVSTLAVLAIFKDSEHISAAYGLALTITMITTTVLLGVYLWYDRKRVGAIVFTVLFLAIQIMFFIASMAKFLHGGWFTCLLTIAILFVMYTWNEGTKLERAQRRHMRPKDFLPALDKLHGDFRIPYFADNIVYLTSDSETKRLDTDIFFSIFADHPKRARAWWAVSVETTDEPFTREYSVENFGTNYIFRVRFRLGFKVSQSIPAYIHQIRHDLSKTGELPKQKSIYPRVDADPDIGTVRYVLVHKALMPESKVSARGALSLQAKYAIRHVAGSPVKWFGLAPYNPLIEVQPLFVSTRRPPRLKRTDGTKTVPAPTPTRSVADPAAVPDPMDTTAGLSRLVQELDAAMSAEEKK
>LR134348.1|VEG22564.1|2125775_2126660_-|glutamine-amidotransferase
MARVSYLTMCRLLGYATAGFNLSLNAVLGQGNVEDFRELSEIHNDGWGVAQLADPASAPYVRDGGAPTPETGTKIYKSTIAARADSTFEALASEPARGAIWHLRLASSNLPLIMENQHPFYANGLSFIHNGDISDANGRNIVTNRSYPVDHSVFLSTGGRSDSAIFFAVILEYVGFGFPLDEAVAQAVRELRQAYPKSSYNCMIQSEDQLIALCAAGREKTSPRIVEIYDEYGRGEQAADYRVMRYHALNDENGDPAGVVVSSSGYEQEGWDVLENDQMIIASNRNGTYRLRSI
>LR134348.1|VEG22563.1|2124881_2125646_+|HD-domain-containing-protein
MTGYIPTLEQIDELHRKIAPSEAAYELVHTHCVIVATIGCQIVRRQNALFTRRCTLPKDAPEWGSNRRTENTVDAAVSATPMPPTAGVTGGQVPPRLLDEHLVLIGGLLHDIGTYRVFKHDGSDGEPLKFSKKRYILHGLKGYEYLLDEGVDEYIAQFCRNHTGVGLTCEDVVKQELPLPPADYVPMNLEQEVVMYADKFHSKSVPPKFLQVEAYTARAERFGEDNKRRWLDLVAKYGVPDIPVLAEKYGMRVI
>LR134348.1|VEG22562.1|2123336_2124521_+|ABC-transporter-ATP-binding-protein
MSEKNEQELSKDEALKNTAESAMASKDAIKPAPADSIQFSVIFDDADGLDLEGADDADDNASGDIYSIMASAESAADVTEASDATAEDNAGAELSEAEADALASADTSAAATKRNADRVNETLNLAKSGGKDELVEHAAPAAKATEPTMTLASRIDRVLVGGGADDILLKTYPTFALNKVTVPGAKGKINVLDSVEFACYVGHAYALLITDDPDSGLTADTKRRALMGVMSGLVQPKSGTVMNKSANIAELEPVDLRGHRLGIVPQLHAVQPDLDAEQNVLYAMNASNRNFLKPKPVIARELLAKVGFSEATSGVAVSKLPVVQQRLVAIARAISTEAEVLILDEPTRGLNVDDTVTVFAALAKLAHSGDPKHCIIVLTASREIAEAADQMFEI
>LR134348.1|VEG22561.1|2121879_2123340_+|efflux-ABC-transporter-permease
MFVLSNAWRALMRSKGRTTLTAFITLAVTFGTVAGLAIVQENTTAHTTTYNSQKANMAIRPSAATWKKVSATDSATTKHYMTWSSYTDYASAIQTAGTTLDFTVTGTVPARVSGDLKALDGGSLGSASDDKTGGQLVWRAFWTKDAAKASDLGTFEIVDGKGLSYNNKSANPDTTGALVSEAFAKANNLKVGDTFKVATATSASDTAELKVRGIYKYTSESTVDNPVVAARNRENAIFTNYQTFSKAGLDPQYSNETASGWELPDLNVVFNVTDSATYDSLLKTLKKAKLPAKGYTISSPSLEAYTKSLEPLDTLAARAKTGVIVLLTVGGVLLLALVLLAAWTPKRNDEIGMALVSGVTRGRLGWQFMLEVFFATLPFYVIGLVGGAFAAKPIGAALISGHTTAVTSSLIWQMVWGGLGAILALAILAALRLAFFSAAKLFAADGDWGTVSEIETIEEADDEVAELGKAVTTTTTTSNDDAEAKA
>LR134348.1|VEG22560.1|2120069_2121476_-|cell-envelope-related-transcriptional-attenuator
MANRHAQNNLPNFGWQKVRGPHHIMAYRTSRKAAAAVSMAVIAVLVFVGTFAAATWADVSGAVSSQKVQVIQQKGAKKVDDSPVDPYANKVINILLIGQDTRDGAGNSAIGGSGSDVADLHNSDTTMILQIAADRKSMNLVSIPRDLMVSTPGCQTTNGEIAAQSSVMFNSIFANGYSQGGDVASAASCTMNEVNHLSGLDIQNFMVVDFGGLVNMIDAIGGVDICIPTQMTDVYTGLNLSPGMQHLTGGLATQYARMRHGTGTDGSDTMRTTRQQYLIRQLVKTALSKNYFTQTSELYQLAKSALDSVQMSEGLANVGTLAGLATSLKNFSMDNLYSMTIPITPWVEDPNRSQLADGADAVWEKLRKGQPLVDKAETAATVDGTTTTDGTTADGATADGTTADGTVTDSSTYNEKIGVITQADGTLIDAQTGGIIDPETGAIRSSVTGQFIGMNNRYIEVTYCGVTY
>LR134348.1|VEG22559.1|2118000_2119794_-|glycosyl-hydrolase-family-25
MSAKRMMSAVAVLASMTLVSAVCAAPASALSDVSVDALADASTDPFRTQTISDDTAADAMPDNPDAALPDQVSAAIPDDATVVSEDHAVTADGELKNITTGETVTDPALVGTQDSQPDPLAKTDGESFIPVQADEVKQKVAANGGDANAGAADAQTAPDTPDTQPEQPRPNDSSDSEQPNQSDSSAPSDSASTSDSGEAIGNASDSATATNGAAKATTKGSVRLAALQNNEYGAHWGSYNGTAAFFDASNNLFVQQAKGVIDVSAWQGNINWQAVKNSGVEGAIIRIGYGWDNGFDKQALRNISECRRLGIPFGIYLYSYAYDANTGAAEGSSLVNLLQKAGVSSSDLGYPVYYDLERWTWTGHEVPNDPGTYDGIVNAWYGRLQSAGYNNLAVYSYTSYLNTALNSGNIHSKTRWVAQYGSSMGYTAFPTNDRGWQYTSRGSVSGISGTVDLNAFGNQTATSSAPSVPVYRVYNPNSGLHHYTMNYNEVIMLVGKGWRYEKTAFRAGQSGIPVYRVYNPNDGNHLFTMNSYERDNLARLGWHDEGVSWYVPSGGSINVYRLYNPNNGEHVFTTEYGEYVLVGRAGWHQEGVAWTSL
>LR134348.1|VEG22558.1|2116944_2117904_-|L,D-transpeptidase-catalytic-domain-containing-protein
MRRTITKHAFVVIAVMAAFMAVLLSPIPQASADEGSRDMYRLYNPNSGEHFYTADSNERDHLTGVGWVYEGIGWRAPVQSSVPVYRLYNSNAGDHHYTLNSYERDMLVSKGWRYEGIGWYSSDTNRSYPLYRQYNPNAKAGAHNYTLNSNEKDMLVRAGWHDEGLAWYGVGPGEGAPVPQYQRPSGGTYPNLSVTPNLSINVSIADQRVYVKSGSNVIYTLIASTGVNNATPRGTFRIGNRGSSFYNAREGMGANYWVAFEPTNTYLFHSVPTNSSGQYIVSEGYKLGQPASHGCVRLSIPDAQWFYQQLPSGTVVHIF
>LR134348.1|VEG22557.1|2116022_2116739_-|L,D-transpeptidase-catalytic-domain-containing-protein
MRITMKRICAVISGLMMVLSIAMAVSGPAHVAYADEGSQEMYRMYNPNSGEHFYTANSYERDNLKSLGWHYEGVGWVAPVTSSVPVYRLYNSNAGDHHYTMNSYEKDMLVSKGWRYEGIGWYSADTTNEFPLYRQYNPNAKAGAHNYTLNSNERDALVRAGWRDEGLAWYALGLGGPAQSQPSTPSRPSGPATVPGAITPGAWCKKIEAGQYGRSEDGDLYQCSYQPGDKIPHWYRVQ
>LR134348.1|VEG22567.1|2130742_2132548_-|ABC-transporter
MAQRNTFREDEELEESINLHDIARVGKYLKLYISRIVRILAVVVSMSCIVVSVPYLTKIMIDDAIPNKDLGKLAMLAGGLFCLIVIYELALRYRTVDITRVGQLMLKDMRRDLFTYIQTLPFSYFDSRPHGKILIRVVNYVNTLSDTLSSGLINVFSDIFTFFVTLIVMFAIDWQLALWSLVLFPVLIIWVRVLQYFQRKAYQVLSNKQSNLNAFIHESIAGVKTTQTFAREKEQFDTFQQQQDDVRTAWMAAKHIEFLMWPGVQTISVMTIAFIYFVGITGFGGVSVTTGMLIAFVGYANNFWNPVINIGNFYNQLVTCSAYLERIFETLDVKPEIANKPGATELPAIQGKVDFNDVVFRYEDDGRNILNLVDFHVTPGKTIALVGPTGAGKTTIVSLLSRFYDVSEGSVTIDGHDVRDVTLESLRRQMGVMLQDTFIFSGNVRDNIRYGKLDATDEEIEAAAKAVHAHEFIMELPDGYDTTVEERGSTLSAGQRQLIAFARVLLADPRILILDEATSNIDTRTEEALQAGLRHLLKGRTSFIIAHRLSTIENADQIFYIDHGQIVEHGTHAELLEAKGAYYRLYESQYAMIRVATGATE
>LR134348.1|VEG22568.1|2132747_2134658_-|ABC-transporter
MYVDPGINTSASNLKWVLSYCKPDLPRVAGALLLFIVNNTMALTIPILSGIIVDRVIVGGHTDELPRLCGLMILMTIIRVGARYGYQMWMERFGQNSVYRLVSDEYEKLHELDFTYFNHTRTGDIMSRLTSDTDAIRHCLSWVSYQIADCVVMFIGALCVMFAIDWRLALALACVTPFIFVLTRGLSTHAHPLFFAIRNSLASLNSMVEENIEGNRVVKAFVREPYETEKFDEHNDDYMQRNMALAYNSRKYMPWLDGLGFSLQLITLGLGGFLVIKGYMTLGNLVSFNSFLWMIDGPVRASGWLINDWQRFNASCIKIRKLLTEQPRIVEKPDAAEAVKQAVTIVEQVKRDDEATGATGAPGASGTYGARQSAERKSCPLRIKGDIRFAHVSFAFPDDPETPILKDLDFTVPAGSKLGILGETGAGKSTLVSLISRFYDPTVGHVLIDGIDARDWPLATLRSQVCIVAQDTFLFSDTIGGNIGFGASDDSDDRYIQKMAQIAGADNFIRSMPQGYDTVVGERGVGLSGGQKQRLSLARALADDPSILIMDDTTSAVDMETEAEIQKHLKEMDSGKTIVTIAHRISSVKDSDLILVLEHGRIVERGTHAELVAAHGRYWGIYHKQLGLQSGAAQGF
>LR134348.1|VEG22569.1|2135078_2135249_+|ATPase
MPSGLQQLEVLRNRARLLHPETSHYMLFSKSGFDEHVAARAAQDGTVTLVDFADMD
>LR134348.1|VEG22570.1|2135365_2136682_-|aaa+-superfamily-atpase
MLKRHAYDQLLNWKNRKTKQGLLITGARQVGKTTLIEQFGADHYEHVAKVNFIEMPQAVETVSKAKDTEDLILRLSVLSGTEITPGKTLLFLDEMQACEDMLTWTKFLSGAKGLDVIVSGSLLGIDVFNVRSIPVGFLQTMRMYPLNFYEFCAACRLPQLALDTLRECYVDRREVPDYLHERLTDLWYKYLLIGGMPDAVQSFVDSADIVKVRNTQQAIFDTYEYDITKYVSDLVERRHIKSIYEAIPSQLNAENKRFKFSKLGKNIRFAHMQTAFDWLANAGIALPTSRVQDPEYPLTEHADENTFKLYMNDVGLLTSRLMRSVDLEIVNHRSSMNYGSIFENAAAQELFAQGLELHYFNQNRIGEVDFVVQQGLDDISLVEIKSGKDYTRHRAMNNLLDTDNYRFAHAYVFHDGNVETVGRTEYLPIYMLGCLSVI
>LR134348.1|VEG22571.1|2137034_2137289_-|family-43-glycoside-hydrolase
MCVLLEQDPARKLYATGHHNIVNVPGTDEWIIAYHRFAYNPAGRWAGGDGCHRGVVFAPLDYNPDGSLVPVRPQVGSYVRSLAF
>LR134348.1|VEG22572.1|2137702_2138110_-|ABC-transporter-substrate-binding-protein
MKKAGIKVKVVNVAESKFSDTVSSGNYQVLPMAWQATSAMTFVVSAPQLYTSDGSSNFSYVGNKKIDELVKKAGNLSDYDEQTKAVNAAEKEAFKLYGTIPVSNPASYLGAKKGLANYGPSGFAGNLPQDIGWQK
>LR134348.1|VEG22573.1|2138137_2138527_-|ABC-transporter-substrate-binding-protein
MTNSISVKDAQLRIGYSTKTRVLEYNGKSKPLDDLQVRKAITQAFDVNTYNNVQFQGLNWKAEQPGSELLLPFQKGYENNLPAEAKYNVDNAKKTLEADGYKMGKDGYYAKGGKTLEISFTFFGDDATQ
>LR134348.1|VEG22574.1|2138528_2138981_+|bleomycin-hydrolase
MPLDVFKKAALDQLTAGHPIWFACDCTQFALRKDGFFDQSVVRVDQLFGTEFTGDKAHGLEYGDSPSNHAMTFTGVNLSEDGKPNRWKVENSWGKDAGKDGYYVMSDAWFDRFVTELIIRKEYLDDATRALLTTEPVELDPWLPLTRRCR
>LR134348.1|VEG22575.1|2139061_2139355_-|Uncharacterised-protein
MYSVTFPGNLTQAESALVKRGTIQIAALLAAKITGRGLIINDGDIEYSWDFILVDASNDEQNTFDERLLRMLSDYIHAGFPDAVVRYTKHEAPKLSK
>LR134348.1|VEG22576.1|2139864_2141652_-|methionine--tRNA-ligase
MPSDVYARYERMKGNDVLMVSGTDEHGTPILVEAEKEGLTAQELANRYNRVIAKDLCDLGLSYDLFTRTTTGNHEHVVQEMFKQCLENGYIYKGTQQVAISPSTGRTLPDRYIEGECPICHAEGARGDQCDACGNELDPDELINPVSKINGETPRFEQTEHYFLDLPALAEANKAWLETRKGWRTNVINFSLGLFKEVKPRAITRDIDWGIPVPVKGWIDNPNKKLYVWFDAVIGYLSASIEWARRQGDPEKWREWWNDPKCPAYYFMGKDNITFHSQIWPSEMLAYNGKGSKGGETGPMGPLNLPEQVVASEFMTMEGKKFSSSRGIVIYVKDILARYPVDAVRYYISVAGPESSDSDFTWAEFVRHNNEELASSWGNLVNRVANLINKNFGEIPPLDEDSMTNEDRGLLEETSAAFDVVGSSIETHHQKHALSEAMRVVGDINKYISATEPWKIKDDQARLGTVLHVAAQAVADANHLLAPFLPHSAQKVWEALGGAGTFSPLPELKEVEDLDKPGFTYPIITGNYELGVNVHPWKSEAIEVGAVVPKPTPIFAKIPTEAVKEELARFDEALAARRAVEAERLAAEKAKLAAE

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Crispr_ID: LR134348_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134348_4

2159246-2159322

Orphan

Consensus_repeat	Method
GCAAATCCCCCAACCAATCGAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134348_4

>merge|LR134348|4|2159246-2159322|CRISPRCasFinder
GCAAATCCCCCAACCAATCGAAGAACCACCCCGTCCACGGACCCTCAACGGGGCAAATCCCCCAACCAACCGAAGAA

>LR134348|4|4|2159246-2159322|CRISPRCasFinder
GCAAATCCCCCAACCAATCGAAGAA	CCACCCCGTCCACGGACCCTCAACGGG
GCAAATCCCCCAACCAACCGAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134348.1\|VEG22588.1\|2160976_2161582_-\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|377412
LR134348.1\|VEG22587.1\|2159452_2160925_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
LR134348.1\|VEG22591.1\|2163799_2164816_+\|bacterial-regulatory-protein,-LacI-family	unknown	unknown	gnl\|CDD\|224525
LR134348.1\|VEG22593.1\|2166772_2167324_-\|phosphoglycerate-mutase-family-protein	unknown	unknown	gnl\|CDD\|366010
LR134348.1\|VEG22584.1\|2152724_2154248_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
LR134348.1\|VEG22578.1\|2143096_2144116_-\|uroporphyrin-III-C/tetrapyrrole-(Corrin/Porphyrin)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
LR134348.1\|VEG22590.1\|2162574_2163429_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
LR134348.1\|VEG22582.1\|2149210_2151079_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|224055
LR134348.1\|VEG22595.1\|2168030_2168798_+\|putative-nitroreductase	unknown	unknown	gnl\|CDD\|380322
LR134348.1\|VEG22594.1\|2167557_2167935_+\|protein	unknown	unknown	gnl\|CDD\|379422
LR134348.1\|VEG22581.1\|2147249_2149079_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|224055
LR134348.1\|VEG22596.1\|2168963_2171711_+\|ABC-2-type-transporter	unknown	unknown	gnl\|CDD\|224428
LR134348.1\|VEG22589.1\|2161732_2162575_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
LR134348.1\|VEG22585.1\|2154501_2158260_-\|efflux-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274008
LR134348.1\|VEG22579.1\|2144776_2146195_-\|transporter,-major-facilitator-family-protein	unknown	unknown	gnl\|CDD\|340890
LR134348.1\|VEG22577.1\|2141967_2142639_+\|protein	unknown	unknown	unknown
LR134348.1\|VEG22586.1\|2158269_2158971_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
LR134348.1\|VEG22592.1\|2165023_2166370_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379175
LR134348.1\|VEG22580.1\|2146299_2147241_+\|ApbE-family-protein	unknown	unknown	gnl\|CDD\|376782
LR134348.1\|VEG22583.1\|2151262_2151784_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670

Protein	Function_ID	Function_description	E-value
LR134348.1\|VEG22588.1\|2160976_2161582_-\|integral-membrane-protein	gnl\|CDD\|377412	pfam04854, DUF624, Protein of unknown function, DUF624. This family includes several uncharacterized bacterial proteins.	1.29089e-07
LR134348.1\|VEG22587.1\|2159452_2160925_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
LR134348.1\|VEG22591.1\|2163799_2164816_+\|bacterial-regulatory-protein,-LacI-family	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	7.7199e-77
LR134348.1\|VEG22593.1\|2166772_2167324_-\|phosphoglycerate-mutase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.24793e-32
LR134348.1\|VEG22584.1\|2152724_2154248_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	4.24587e-155
LR134348.1\|VEG22578.1\|2143096_2144116_-\|uroporphyrin-III-C/tetrapyrrole-(Corrin/Porphyrin)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	8.88393e-106
LR134348.1\|VEG22590.1\|2162574_2163429_-\|ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.2199e-52
LR134348.1\|VEG22582.1\|2149210_2151079_-\|ABC-transporter	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.52193e-142
LR134348.1\|VEG22595.1\|2168030_2168798_+\|putative-nitroreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	1.55485e-77
LR134348.1\|VEG22594.1\|2167557_2167935_+\|protein	gnl\|CDD\|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	4.09412e-11
LR134348.1\|VEG22581.1\|2147249_2149079_-\|ABC-transporter	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.75794e-178
LR134348.1\|VEG22596.1\|2168963_2171711_+\|ABC-2-type-transporter	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	4.04757e-89
LR134348.1\|VEG22585.1\|2154501_2158260_-\|efflux-ABC-transporter-permease	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	5.23198e-20
LR134348.1\|VEG22579.1\|2144776_2146195_-\|transporter,-major-facilitator-family-protein	gnl\|CDD\|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.54925e-45
LR134348.1\|VEG22589.1\|2161732_2162575_-\|ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.68174e-62
LR134348.1\|VEG22586.1\|2158269_2158971_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.59092e-99
LR134348.1\|VEG22592.1\|2165023_2166370_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|379175	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	7.00175e-35
LR134348.1\|VEG22580.1\|2146299_2147241_+\|ApbE-family-protein	gnl\|CDD\|376782	pfam02424, ApbE, ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. It acts as an FAD:protein FMN-transferase, catalyzing the attachment of an FMN residue to a threonine residue of a protein via a phosphoester bond in such bacterial flavoproteins.	2.68138e-23
LR134348.1\|VEG22583.1\|2151262_2151784_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.75867e-15

>LR134348.1|VEG22586.1|2158269_2158971_-|ABC-transporter-ATP-binding-protein
MAYIEFDKVVKEYPSGGTSIRALDEASFTADQGELTVILGQSGAGKTTALNILGGMDTATSGRVVVGERDITGLRKRDLITYRRNDVGFVFQFYNLVPNLTALENVELASQICPDHFDPAETLRKVGLGERMNNFPGQLSGGEQQRVSIARAIAKKPKLLLCDEPTGALDYETGKEVLQLLQDICRDEGMTVMIITHNSALAPMAHKVIHFRSGTVTSEEINTAPQPIADIEW
>LR134348.1|VEG22585.1|2154501_2158260_-|efflux-ABC-transporter-permease
MATARHSHTGFPGGRPVKHLVKQRSQSVKRPVKQSESDDRGSSVSAVFVKDALRCWLRSWKRFVSIAVITLLGVAVLTGIYAGCRDAFLAASRFYGQQGLHDVQVLSTYGLTSDDAAALRRVEGVETVQPERSQTVTATVKGTKKTVTMQEIGTEGLDQPYLQQGDMPSKAGEVAVTQQFLNDSGLEIGDDLTVTPRSASSTVLVGAEDKSNRGSSKSSDGDTGTVGAAEDATTSNNEKEQSPQFPTELTITAVVLDPSDLNNPAGYSGMTAFRSTSSEDYVFFAPSDGVTGNVYTAISIAVAGASQYDTFSDDYDAAIKTVADRIESQIQTQRQKARRQQIVTSAQNTLDAAKADALKQLDEGQQQIDSNRAELEANETKLAESRTQLEQNKASITDGERQIAEGRAQIASARQQIAQGRQQIADARAQLESGKAQLTSARQQLDAAQAELTANRSKVEQGIAQIDQGVAQLDQMLQLIQQADDLLSQLDPNIDIDSSTWQTVKQLLTSLGITVPDVPSISSLRQQLDAKQNELQSQRSDAIKKKTELQQTLDGTIAPAQNTLDQQNAQLTAKEQEAAAGEAELNAKLAELESNAAQLETRSAQLEAQAAQLAGGKQQLEEGEKQLKDGEQQLEDGKQQLEDAQQELDEKRSEAESEFAKQQRCIDDVANARWYVQTRSSIDGFSSLKSDVSSIESIGRAFPVVFLLVAVLMSLTTMTRMVEEDRGLIGTYLGLGYGGMVVSLRYLLFALLACLVGGGIGLLVGFLGIPAFLLIVIKGLYILPDVRLEYDWGYGTAGILLFVVGVGVATALACRSEIRHTPAALMRPKAPKAGARILLERIRPVWNRLSFLGKVTARNIFRFKSRLLMTVGGVAGCTALIICGFAINDTVDTIGVKQYGQIYQYDLMVVSNDDDAAVMRKQVKKDGRTTETLNLRVDSAEMSNAAQESETIQLMAVPNNSLNKLNDMVTLEEAGDEGWFGLPNFFGASGGGTVTLDDSGVIVAQSAANSLGVHAGDTVTVSNGGSSRAKIKVAAVVRSLIGSDVYISERLYDQKFAAHDIDSSASDGESSTLTWNAMLAKLKGPDGEQAEYADRLGEESSVVKAVSCAHLEATFKFDLMAAVVALIVGLAGGLALVVLFTLANTNVSERVREMATLKVLGFYDREVHNYVNREMMILTGMGVVVGLPLGRWIGGLLTAALNMPSLYFEVEVHWYSYAIAVAVTLAFALLVQLFTNPVLDRIEPVSSLKSVE
>LR134348.1|VEG22584.1|2152724_2154248_-|amino-acid-permease
MADTNANGNAQQSGSKLKSVESLDQTNAMERGLSNRHVQFIAIGGTIGTGLFLGSGKSISLTGPSIVFVYILVGVIMFFLMRAIGEMMYRDPSQHTFINFITRYLGNGWGHFAGWTYWAALVLLGMTEITAVSTYFITFFDTFGIDLTHWKWLIELCFLVSLVSVNLIAVKVFGEVEFWFSMIKITLIGAMIVTAVVMIVIGYQYPAARIHGVDHVSPAGHAGLDNLFAGFSFAPNGWMAFLMSFQMVFFAYELLEFVGVTVSETKNPREVLPKAVNEIIVRVLIFYVGALVAIMCIVPWTSFKPNEDGSFASPFIMVFQYAGLNWASALVFFVVITAASSSLNSLLYSAGRHLYQLAEESPSPMLNKIGQVSDRKVPARAILVSAVLILLSPIVNAIPGVSGAFVLFSSASSAVFLFIYILTLVAHRKYRRSDDFIPDGFVMPVWKVLNTVAIAFFVFIYLTLFLADDTRNSAIAGLVWLIGFGGFSLLRERYRSRDLKAALEHKE
>LR134348.1|VEG22583.1|2151262_2151784_-|MarR-family-transcriptional-regulator
MGFEQEAVGELYASVWGNRSKMQREFTRGAHGEQFVLRELSFKGTQTPSQLATALQASSGRISTVLSSLEKKGWITRDIDSNDRRIIRVSLTDSGREESRRMIDEMRSAICWIFSQMGERRTREFVDLLSEFTTYMSICHPGQPRPTPEQVRGAFAERDKRVAEHMAAKHAEG
>LR134348.1|VEG22582.1|2149210_2151079_-|ABC-transporter
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVCCAIITGYIAARVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVATAIAVVILLVAVVILMALVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAIMMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTEPIVKNGTKRAADIAKTGQTGTVEFKNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQVLVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTSAGRKREALQLATDAANDGKLTDEQMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAKEAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHRELLENCEVYRQIAESQLSESELTA
>LR134348.1|VEG22581.1|2147249_2149079_-|ABC-transporter
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNSIDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRITNDVDAIGQTLGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKASQKYFTRQQVALGDVNGHVEEMYAGHTIVKAYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPLSQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQVLLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVAIVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNDTVRENIAYSKPGVTDEQIISACKAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG
>LR134348.1|VEG22580.1|2146299_2147241_+|ApbE-family-protein
MTGLTEQLPHTAAFPNALGTGLLLHTASALGGDLHQHIEDLISDYENVLSRFKGDSIVGQMRVATHGGTFDFPDWTLNLFDLYDHLFSATNGAIDPCVGEDLIRLGYDKSYSSVNEPNADEHTGAIHGRATWDHAIEHHGTTLVTHGPVALDFGACGKGYLVDLIAERLGVAQSDLRYVIDAGGDLLVHTSEPITIALEDPSDPANAVGVAEISQGAFCASSPSRRHWTDAAGHQLHHLLNAIDGVPVNSVAATWVAATPPSLATAQADGLATALFTSPAAQLRAHFPFECAILTADRSAAQSPDFPGSFFMR
>LR134348.1|VEG22579.1|2144776_2146195_-|transporter,-major-facilitator-family-protein
MDNATAVSATNVSGGSLQSTIKDLPIAKVWAFAVGQFGWALLSGIISNWLVYFYQPDQETISQGQTVFVPQGLVVLGLVTVVGGITAFARFFDAFVDPAVASLSDRCDSKAGRRMPFLKFAALPLAVVTVLVFWSPINGTSWVNAAFLFVTVIGYYIALTFYCTPYNALIAELGHDSKQQLTISTAISFTWVAGTAIAYVAPVIWGAFVPMMGRITAIRVTFTIMAAVAFACMLVPPLAIREKDYVNSQPTSESTIESLKQTFSDGEFRKFVCSDVVYWVAITTFQTGLPFFVTSLLKLPETTTTIYFVLMTGVSVLFYLPVNILANRVGKKRLLLIAFVIFTCAFAFAGALGSGVLALMPAMAQGLTLSVVGAIPMAAFGILPQAIVANIADASSKTTGQDRQGMFYAARTFAMKMGQSVAMLLFTGVSTIGMASGAGYRIAAVCAAVLCGLGGIVFAFYNEKKVLHVLGA
>LR134348.1|VEG22578.1|2143096_2144116_-|uroporphyrin-III-C/tetrapyrrole-(Corrin/Porphyrin)-methyltransferase
MTSADELNEQRDAEQSVAQVFERNDGNDGIDAGGPAASQTRESAVTIPAGTVVLAATPIGNVGDASARLVAFLERADIVAAEDTRRLFDLARRLGVYVNGRVVAYHDHNERDKADGLLDQVETGATVLVVSDAGMPTINDPGLAIVRRAIERGLPVTCAPGPSAVLDALALSGLPTDRFCYEGFLPRKHAERVQYLRTLLGERRTIVFYETPHRIADSMDDLLDAFGPNRPMALCRELTKDYEQIRRGPIGEIRQSVIDDPPRGEMVLVIGGASSEEAEAAAPSTLSVEDMAVLAIDRALEDGLRIKDAIAQVVQEHPLADGSLANRKQVYAAVLEIKG
>LR134348.1|VEG22577.1|2141967_2142639_+|protein
MRMVGHMNAPNRSMTSTIANAGTARHTTVSLSVPPVLFTKDLPGPLSLSRLETFGTIRKFDESAGYWNEHANTLYGRAMIVSTVAPFGTVACALTAAWVWLGGPDFPRTIDVISTSHFRSTSAGRRIRVFRRVTSPEHIIRLGNLPVTTPQRTACDLVMGMDDAPDPSAINTLVCRLMTAYSFRASECLQIIKEHRHHKHAGRARIFFESLQRESEPALGQCA
>LR134348.1|VEG22587.1|2159452_2160925_+|amino-acid-permease
MSTTDAPKKPRETDDVPVPATLRKSLKNRHIQLIALGGAIGTGLFYGSSESIALAGPSILLAYLIGGFAIFMIVRALSEMSVEDPKAGAFSYYATRYWSKRAGFISGWNYWFNYILVSMVELAVVGSFVNYWFPAIPTWVSAAVFLVLITAANLLGVSKFGEFEFWFAIIKIVAVIAMIIGGLAVIIFALPTASGIKASFANWFTVGGGFFPNGLMGHTDNGWTGLLMALVVVMFSFGGTELIGITAGETEDPRTTIPRATNDIIWRILVFYIGALGVIMAVVPWNTIDGKSSPFVQIFDSVGIHAAAGILNFVCLTAVMSVYNSGLYANSRMLYSLAKQGNAPAYLGKLNSKGVPVAGVLTSAVITAIAVVVVFVWPEFAFNYLMSIATIAGIINWTMIMFTEMKFRKVVEAGGAPEDSNLAGKSGQEALDAIHFKLPFAKVTPWVVLVFLALVVVLMCFSASYRIAVIAGVIWLAILFVAYQITQAKK
>LR134348.1|VEG22588.1|2160976_2161582_-|integral-membrane-protein
MNWLAPDSKFMRAWSNLIDGVWVNILMLVTSIPIITIGAALTAGHDACRRSIEGEGKGVTANYFRSFKANFVKATLLWLPFLVVLIALAWSWIVLQFTPLLIIKFALTIIWLIGFEWVFALQARFENTVAGTLKNAFIFGISHIAMTAALVVVDAVFVALLVGSWFYMPGGLFLLVILGYGTMLMLHIPVTERVFKPYLQQ
>LR134348.1|VEG22589.1|2161732_2162575_-|ABC-transporter-permease
MNENKPVKHGALWTVLFAVVSLFWIFPIVLVLINSFKQKAYISKNAFSLPAGKAFVGFENYVRGVETTQFFASFGWTLLITVGSVILILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIVPFQMVMFTLSKIADMLKLNTPWGLCIVYLGFGAGLAVFIFTGVIKGIPAELEESAMIDGASVPRIFFQIVVPIMKPSIVSVAILEAMWIWNDYLLPYLTLDLGKYKTISVAVQYLKGGYGSVDMGAMMACLVLAIIPIIVFYLVCQKYIVSGVMAGAVKG
>LR134348.1|VEG22590.1|2162574_2163429_-|ABC-transporter-permease
MISMAGKAIRRWWALFALPTFAAFIIGFLVPFIMGVYLSFCEFTTVTDGEWIGLKNYTKALKDKEFLHALGFSTAFTIVTTIVINVIAFAIAYMLTKAIKGSTLFRSVFFMPNLIGGIILGYIWLLLLNGVLAHWGRALTYKASYGFWGLVILVCWQQIGYMMIIYIAGLQALPTDVLEAAAVDGANGRQTMFRIIIPLMMPSITVCSFLTVTNGFKLYDQNLALTNGAPSNMSEGLALNITRTFYGRMGWEGVGQAKAVLFFILVAVIALIQNKLTTSKEVAA
>LR134348.1|VEG22591.1|2163799_2164816_+|bacterial-regulatory-protein,-LacI-family
MTTSIQDVAQKAGVSISTVSRSFTRPDLVSTKTRERVLAIADELNFSLFRSAAALKSGRSLRIAVLMSGHIRLWFTASVIEGLNEVLHAAGYDISVFQISSIEERREFFEMLPVRRNADAVIVVSFDIDNNEITQLASADVPIIGINSVDPEVRGFTAAVNINDVQGSTLAARHLINLGHRDIAYISTDRDVSLNFSVQNRFGAFTECCRNEGIEPQVIVCKVDDAGRYQISDVVTQLMSLPKLPTAIACQEDGIALPLMFQLERNGLSVPGDVSLIGYDDSFYTDDIGLTTIRQNPVGMARKAAHMTLDLIEEKPVDEPYVVAPAHLVVRSSTAKIR
>LR134348.1|VEG22592.1|2165023_2166370_-|ABC-transporter-substrate-binding-protein
MKEKGSMMNRTVKSAVAVAAIAAMSLGTLAACGSSTSGDDSKGKVYYLNFKPEAADQWAALAKEYTKEKGVEVKVQTAASGTYEQTLKSEIAKTEAPTLFQVNGPVGYQNWKKYTADMSKTDVYKELTNQDVALKDGDKVVGVPYVMETYGLIYNKDILNKYFALDGAKATSMDEIDNFDTLKAVADDMQSRKDELGIKGAFTSAGFDSSSDWRFKTHLANLPLYYEFKDDNVTEQPAKIKGTYLPNYKKIFDLYITDSTTEPTQLSAKTGDDANSEFALGEAAFYQNGTWAWTDLQKAGMKAESVGMMPIYIGVKGEEKQGLATGSENYWCINDKASDADKKATEDFLSWVITSDAGKKALSQDMGFTTPFKTFDDVKSDNPLTEAAVEDQKSGKTQVSWNFTMMPSEEWKNKIGQALLEYAQGTGNWDAVKATFVDGWASEYEASH
>LR134348.1|VEG22593.1|2166772_2167324_-|phosphoglycerate-mutase-family-protein
MDAGARLREAFPEGFDPECVFSSPLKRACQTAELAGFAQHGILDGIAEWDYGRAEGRTRQQVSEASGFSWDVWRDGPRSLTPTLEGDWVDTLPDGEQVNVHSGAGETLDEVAARARTAIEEVTPLLQSGRNVLLVAHAHILRILTSQWLNVDPQFARLLRLDTAHYSVLSVYKGDNVIERWNA
>LR134348.1|VEG22594.1|2167557_2167935_+|protein
MSDETSTGIASDADRVVEGLHRIDQKVDDLRNQRLNDPDSLGDKLVKSAVPALAGLVAGKLFQIAWDKGAARRNVIKGLAADAPQGLAMSLAFAAISAAFGAIVSQLSNQGSQAFVERRHRKASR
>LR134348.1|VEG22595.1|2168030_2168798_+|putative-nitroreductase
MATNATIETLLNRRSIRKFKDEPIDDDATATLETVAQHAASSQFLNDWSAIRVSDPAIKARLAEIGNQPYIATAPLLYVFVIDEHRNAHIAQRKGIDPTSDEFHLKYSYRFTQAQNDAVLALHAMETAAYSLGLGGVILGSLLNDIPALIDLLNLPEYTYPVLGLALGKPDQEPTLKPRMPRSMQFFDNTYPADDDGMLEQLPDFDNKVHQYYDLRQTDRPVDAFSDQIASVSRQGVSGKTLLDKAAAQGFQLDK
>LR134348.1|VEG22596.1|2168963_2171711_+|ABC-2-type-transporter
MRTVWQVFLRDCKRILRNPVAAVVTLGVAVLPSLYAWFNILANWDPYSATGNLQVAVANEDRGTTNDLVGHLNAGKQVVIKLKHNDQLGWRFVSNEEQAVQGVQTGDYYAAIVLPKDFSASLVDSLTGTSKQPKIKYYVNEKKNAIAPKITDTGATTIDEQINSTFVTTVSNTVAAAISQAGDDLDQATNSTQNNVVADLGSVLSTIATVQDALTDLRTTLDQSDTALADARSTTASLQRSITAAQQASQQSGALLAETQDGSKVFAASLVSALDTSSAQLSGLTVNVNNAAGTINQSFNTAQNSVDTITNALNSPLDKTATSLDTLKDALNKAGISADTTDPTGKRIWDHINAIDDAISTQQAKINTFHEDTTRFIDSGKSATTNLSGAMSGTATGGIAALNTARSSLTGTVMPSLTSSLNSFAALNGTLNGTLTSLSGTLDQTNGLFDQLSSTIAQTRTTIGSAQDSLNQIIDDVSTVRTDVATLDSSAVYQKIRDTMHLDDKGFGEFMGSPVTLTTKVVYAIDNYGSAVTPFYTNLALWVGGFVLIAIYKLEVDRESIRRINAKQAYLGRWMLLVTIGFLQAIIATVGDLVLGIQCEHPLLFILAGIFCSFIYINIIYALAVAFRHIGKAIAVILVIVQIPGASGLYPIEMMPDFFRKLHPWLPFTYGINAMRGPIAGTYSNHYWLDMLHLFWYLPAALFVGLVVRRYAMNLNALFDRRLGDTDLMITEHNSMVNEQVSLASVFRTVSDSKELKAIITRRAHRFFARYPMMIVAGLALLTILPFVFLILLFVTQEKIAMLTSWILSIILIDAYLIVVEYTRESYAMQLGVSAMNADEFRDVMLNGYVWRRFRSHGRHEAASAESAVDTDPDIGEVTEQLTPFERTGSTDSSDSSKSSESTITDTNPAQGGAR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134348_2	2.1\|2009010\|36\|LR134348\|CRISPRCasFinder	2009010-2009045	36	LR134348.1	2010347-2010382	1	0.972

1. spacer 2.1|2009010|36|LR134348|CRISPRCasFinder matches to position: 2010347-2010382, mismatch: 1, identity: 0.972

tcaaagccaatgacagatatttaggaaaccaacccc	CRISPR spacer
tcaaagccaatgacagatatttaggaaatcaacccc	Protospacer
****************************.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

432675 : 490838

Staphylococcus_phage(42.86%)

transposase,integrase,tRNA

attL 486308:486325|attR 497567:497584

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG21086.1\|432675_433452_+\|tRNA	tRNA nucleotidyltransferase	NA	NA	NA	NA
VEG21087.1\|433573_434347_+	Ham1 family protein	NA	NA	NA	NA
VEG21088.1\|434472_435474_-	transporter, auxin efflux carrier domain protein	NA	NA	NA	NA
VEG21089.1\|436348_438049_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
VEG21090.1\|438561_439980_-	nitrate/sulfonate/bicarbonate family ABC transporter ATPase	G3M9Y6	Bacillus_virus	4.2e-34	37.8
VEG21091.1\|440101_441892_-	ABC transporter permease	NA	NA	NA	NA
VEG21092.1\|442806_443256_+	50S ribosomal protein L19	NA	NA	NA	NA
VEG21093.1\|443424_444348_+	signal peptidase I	NA	NA	NA	NA
VEG21094.1\|444375_445233_+	ribonuclease HII	NA	NA	NA	NA
VEG21095.1\|445394_446510_+	LacI-type transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.2e-28	30.8
VEG21096.1\|446670_446817_-	Uncharacterised protein	NA	NA	NA	NA
VEG21097.1\|447062_448886_-	AMP-binding protein	A0A1V0SBX8	Catovirus	4.7e-46	26.1
VEG21098.1\|449233_449500_+	transport protein	NA	NA	NA	NA
VEG21099.1\|449533_449737_+	transport protein	NA	NA	NA	NA
VEG21100.1\|450509_450659_+	Uncharacterised protein	NA	NA	NA	NA
VEG21101.1\|450619_454681_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.2e-17	28.7
VEG21102.1\|456012_457362_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
VEG21103.1\|457597_458545_+	ABC transporter permease	NA	NA	NA	NA
VEG21104.1\|458597_459596_+	ABC transporter permease	NA	NA	NA	NA
VEG21105.1\|459763_461896_+	beta-galactosidase	NA	NA	NA	NA
VEG21106.1\|461938_462994_+	bacterial regulatory protein, LacI family	NA	NA	NA	NA
VEG21107.1\|463053_463602_+	2,5-diketo-D-gluconic acid reductase A	NA	NA	NA	NA
VEG21108.1\|463601_464360_+	protein	NA	NA	NA	NA
VEG21109.1\|464780_466106_+	manganese transport protein	NA	NA	NA	NA
VEG21110.1\|466146_467745_-	putative permease	NA	NA	NA	NA
VEG21111.1\|468046_469888_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
VEG21112.1\|470006_471758_-	undecaprenyl-phosphate sugar phosphotransferase	NA	NA	NA	NA
VEG21113.1\|471979_472585_+	putative low molecular weight protein-tyrosine-phosphatase	NA	NA	NA	NA
VEG21114.1\|472700_474074_+	protein	NA	NA	NA	NA
VEG21115.1\|474015_474171_+	Uncharacterised protein	NA	NA	NA	NA
VEG21116.1\|474192_475299_-\|integrase	integrase, catalytic region	W5R8L2	Staphylococcus_phage	3.7e-38	33.6
VEG21117.1\|475519_476650_+	glycosyltransferase, group 1 family protein	NA	NA	NA	NA
VEG21118.1\|476685_477753_+	glycosyltransferase, group 1 family protein	NA	NA	NA	NA
VEG21119.1\|477761_479006_+	oligosaccharide repeat unit polymerase Wzy	NA	NA	NA	NA
VEG21120.1\|479002_480148_+	polysaccharide pyruvyl transferase	NA	NA	NA	NA
VEG21121.1\|480163_481624_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
VEG21122.1\|481633_482635_+	glycosyltransferase, group 2 family protein	NA	NA	NA	NA
VEG21123.1\|482681_484472_+	putative 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase	NA	NA	NA	NA
VEG21124.1\|484728_485208_-\|transposase	transposase, mutator type	A0A0N9STL0	Staphylococcus_phage	3.7e-11	33.6
VEG21125.1\|485776_485995_-	Uncharacterised protein	NA	NA	NA	NA
VEG21126.1\|485997_486210_-	M22 peptidase	NA	NA	NA	NA
486308:486325	attL	NA	NA	NA	NA
VEG21127.1\|486390_486534_+\|integrase	integrase, catalytic domain protein	NA	NA	NA	NA
VEG21128.1\|486588_487260_+\|transposase	transposase	NA	NA	NA	NA
VEG21129.1\|487580_488366_+	Uncharacterised protein	NA	NA	NA	NA
VEG21130.1\|488362_488944_+	protein	NA	NA	NA	NA
VEG21131.1\|489595_490030_-\|transposase	mutator type transposase	NA	NA	NA	NA
VEG21132.1\|490130_490838_-\|transposase	mutator type transposase	A0A0N9STL0	Staphylococcus_phage	5.0e-20	35.7
497567:497584	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1257081 : 1300570

Paenibacillus_phage(33.33%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG21807.1\|1257081_1258125_-\|protease	putative glycoprotease GCP	A0A0R6PI74	Moraxella_phage	7.8e-54	39.3
VEG21808.1\|1258121_1258721_-	ribosomal-protein-alanine acetyltransferase	NA	NA	NA	NA
VEG21809.1\|1258735_1259617_-\|protease	metal-dependent proteases-like protein	NA	NA	NA	NA
VEG21810.1\|1259673_1260240_-	hydrolase, P-loop family	NA	NA	NA	NA
VEG21811.1\|1260248_1261220_-	DNA polymerase III subunit delta	NA	NA	NA	NA
VEG21812.1\|1261298_1263005_-	competence protein	NA	NA	NA	NA
VEG21813.1\|1263001_1263427_-	comea	NA	NA	NA	NA
VEG21814.1\|1263854_1266818_-\|tRNA	leucyl-tRNA synthetase LeuS	A0A2H4PQS0	Staphylococcus_phage	1.1e-198	42.3
VEG21815.1\|1266860_1267742_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
VEG21816.1\|1267754_1268705_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA
VEG21817.1\|1268884_1269730_-	phosphoglycerate mutase family protein	NA	NA	NA	NA
VEG21818.1\|1269798_1271070_+	sam-dependent methyltransferase	NA	NA	NA	NA
VEG21819.1\|1271151_1271556_-	putative flavin-nucleotide-binding protein	NA	NA	NA	NA
VEG21820.1\|1271790_1272726_+	EamA-like transporter family protein	NA	NA	NA	NA
VEG21821.1\|1272800_1273499_+	nitroreductase	NA	NA	NA	NA
VEG21822.1\|1273670_1274870_+	protein	NA	NA	NA	NA
VEG21823.1\|1274866_1275052_+	Uncharacterised protein	NA	NA	NA	NA
VEG21824.1\|1275345_1276644_+	protein	NA	NA	NA	NA
VEG21825.1\|1276710_1277946_+	N-acylglucosamine 2-epimerase	NA	NA	NA	NA
VEG21826.1\|1277991_1278702_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.3e-41	42.6
VEG21827.1\|1278727_1279375_-\|transposase	IS3 family transposase	NA	NA	NA	NA
VEG21828.1\|1279710_1280796_-	bacterial regulatory protein, LacI family	NA	NA	NA	NA
VEG21829.1\|1280973_1282251_-	protein	NA	NA	NA	NA
VEG21830.1\|1282266_1283094_-	ABC transporter permease	NA	NA	NA	NA
VEG21831.1\|1283083_1284073_-	ABC transporter permease	NA	NA	NA	NA
VEG21832.1\|1284072_1285296_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
VEG21833.1\|1285727_1288877_-	glycoside hydrolase family protein	NA	NA	NA	NA
VEG21834.1\|1289007_1292127_-	glycosyl hydrolase family 38, N-terminal domain protein	NA	NA	NA	NA
VEG21835.1\|1292287_1292776_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
VEG21836.1\|1292938_1293553_-	protein	A0A292GAU5	Xanthomonas_phage	1.2e-25	37.2
VEG21837.1\|1293696_1294125_-	protein	NA	NA	NA	NA
VEG21838.1\|1294220_1294514_+\|transposase	transposase IS3/IS911 family protein	A0A0C5AJ30	Paenibacillus_phage	3.9e-11	42.4
VEG21839.1\|1294896_1295343_+	Integrase, catalytic region	NA	NA	NA	NA
VEG21840.1\|1295710_1297279_+	transporter, major facilitator family protein	NA	NA	NA	NA
VEG21841.1\|1297294_1297588_+	KR domain-containing protein	NA	NA	NA	NA
VEG21842.1\|1297708_1297999_+	Uncharacterised protein	NA	NA	NA	NA
VEG21843.1\|1298252_1298888_+	tetR family transcriptional regulator	NA	NA	NA	NA
VEG21844.1\|1298836_1299385_-	phosphopantetheinyl transferase	NA	NA	NA	NA
VEG21845.1\|1299447_1299894_-	Integrase, catalytic region	NA	NA	NA	NA
VEG21846.1\|1300276_1300570_-\|transposase	transposase IS3/IS911 family protein	A0A0C5AJ30	Paenibacillus_phage	1.1e-10	41.3

DBSCAN-SWA_3

1482333 : 1494345

Propionibacterium_phage(33.33%)

head,portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG22010.1\|1482333_1485195_-	phage tale measure protein	K4JW62	Streptococcus_phage	4.6e-56	57.7
VEG22011.1\|1485229_1485556_-	Uncharacterised protein	NA	NA	NA	NA
VEG22012.1\|1485552_1485975_-	Uncharacterised protein	NA	NA	NA	NA
VEG22013.1\|1486075_1486351_-	Bacterial Ig-like domain (group 2)	NA	NA	NA	NA
VEG22014.1\|1486347_1486947_-	Uncharacterised protein	NA	NA	NA	NA
VEG22015.1\|1486960_1487392_-	Uncharacterised protein	NA	NA	NA	NA
VEG22016.1\|1487391_1487679_-	Uncharacterised protein	A0A1P8VV83	Rathayibacter_phage	6.0e-17	48.9
VEG22017.1\|1487683_1488082_-	Uncharacterised protein	A6N202	Microbacterium_phage	3.1e-11	39.6
VEG22018.1\|1488078_1488597_-	Uncharacterised protein	A0A1D8ETD3	Propionibacterium_phage	6.9e-11	31.1
VEG22019.1\|1488611_1488959_-	Uncharacterised protein	NA	NA	NA	NA
VEG22020.1\|1488967_1490170_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A1D8ETI2	Propionibacterium_phage	1.4e-112	52.7
VEG22021.1\|1490184_1490931_-\|head	Phage Prohead Protease	A0A0E3XB56	Gordonia_phage	3.1e-28	38.5
VEG22022.1\|1490927_1492334_-\|portal	phage portal protein, HK97 family	A0A222ZFM5	Arthrobacter_phage	6.1e-46	34.5
VEG22023.1\|1492355_1493969_-	phage Terminase	A0A1D8ETA8	Propionibacterium_phage	6.6e-137	52.1
VEG22024.1\|1493982_1494345_-	Uncharacterised protein	A6N1Z4	Microbacterium_phage	2.9e-08	40.5

DBSCAN-SWA_4

1497885 : 1505712

Lactococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG22034.1\|1497885_1498344_-	phage N-6-adenine-methyltransferase	A0A126HBP0	Lactococcus_phage	2.7e-35	51.6
VEG22035.1\|1498375_1498552_-	Uncharacterised protein	NA	NA	NA	NA
VEG22036.1\|1498548_1498878_-	Uncharacterised protein	NA	NA	NA	NA
VEG22037.1\|1498874_1499156_-	Uncharacterised protein	NA	NA	NA	NA
VEG22038.1\|1499152_1499350_-	Uncharacterised protein	NA	NA	NA	NA
VEG22039.1\|1499346_1499850_-	Uncharacterised protein	NA	NA	NA	NA
VEG22040.1\|1499852_1500245_-	Uncharacterised protein	NA	NA	NA	NA
VEG22041.1\|1500374_1500875_-	Single-strand DNA-binding protein	A6N1Y1	Microbacterium_phage	1.2e-41	63.0
VEG22042.1\|1500874_1501045_-	Uncharacterised protein	NA	NA	NA	NA
VEG22043.1\|1501044_1501890_-	P33	Q858E1	Salmonella_phage	7.9e-49	48.3
VEG22044.1\|1501892_1502855_-	putative phage-type endonuclease	I4AZN3	Saccharomonospora_phage	1.3e-23	27.8
VEG22045.1\|1502851_1503010_-	Uncharacterised protein	NA	NA	NA	NA
VEG22046.1\|1503006_1503654_-	Uncharacterised protein	NA	NA	NA	NA
VEG22047.1\|1503825_1504047_-	Helix-turn-helix domain	NA	NA	NA	NA
VEG22048.1\|1504039_1504819_-	phage antirepressor protein	I3NLD0	Bifidobacterium_phage	9.4e-105	73.6
VEG22049.1\|1504815_1505712_-	DNA-cytosine methyltransferase	A0A2I7RFJ9	Vibrio_phage	1.1e-29	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134348

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection