CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134350	Actinomyces howellii strain NCTC11636 genome assembly, chromosome: 1	14 crisprs	WYL,cas4,DEDDh,cas1,csb3,cas3,csb2gr5,csb1gr7,csa3	7	22	3	1

1. LR134350

CRISPR-Cas detection and classification

Crispr_ID: LR134350_2

• CRISPR_ID: LR134350_2
• CRISPR_location: 1052713-1053321
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 8 spacers
• Cas_protein_info: cas1,csb3,cas3,csb2gr5,csb1gr7

Consensus repeat of LR134350_2

Consensus_repeat	Method
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CRISPRCasFinder
CCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	PILER-CR
GCAACCCCCGAAGGGGCTGCAAC	CRT

spacers of LR134350_2

>2.1|1052749|38|LR134350|CRISPRCasFinder
TGCGGCCAGGAGGAGGTCGTTGTCGAGGCGGCCTATGA
>2.2|1052823|36|LR134350|CRISPRCasFinder
CCTCCGCGGCGGCGACCTGGGCCGCCGGTTCATGAT
>2.3|1052895|34|LR134350|CRISPRCasFinder
ATCTCATTCGACCCGACCAAGATGAGTGGTGAGC
>2.4|1052965|37|LR134350|CRISPRCasFinder
TCGCAATCTGGATGTTGCGTGCCTGCTCCTCGCCGTC
>2.5|1053038|35|LR134350|CRISPRCasFinder
TCGTCCACCCGGGCGCCGCGGCACAGCGTGCGGCT
>2.6|1053109|35|LR134350|CRISPRCasFinder
ACGTCCTTCGTCGTCGCCTCCAGGTAACCCTCCCG
>2.7|1053180|36|LR134350|CRISPRCasFinder
CGTCGTCCTGACCGCAGCGATGTGGCTCATCGGACG
>2.8|1053252|33|LR134350|CRISPRCasFinder
GGCGGAGATCGACAAGCTCCAGTCTGACGGCGT
>2.9|1052749|39|LR134350|PILER-CR
TGCGGCCAGGAGGAGGTCGTTGTCGAGGCGGCCTATGAG
>2.10|1052823|37|LR134350|PILER-CR
CCTCCGCGGCGGCGACCTGGGCCGCCGGTTCATGATG
>2.11|1052895|35|LR134350|PILER-CR
ATCTCATTCGACCCGACCAAGATGAGTGGTGAGCG
>2.12|1052965|38|LR134350|PILER-CR
TCGCAATCTGGATGTTGCGTGCCTGCTCCTCGCCGTCG
>2.13|1053038|36|LR134350|PILER-CR
TCGTCCACCCGGGCGCCGCGGCACAGCGTGCGGCTG
>2.14|1053109|36|LR134350|PILER-CR
ACGTCCTTCGTCGTCGCCTCCAGGTAACCCTCCCGG
>2.15|1053180|37|LR134350|PILER-CR
CGTCGTCCTGACCGCAGCGATGTGGCTCATCGGACGG
>2.16|1053252|34|LR134350|PILER-CR
GGCGGAGATCGACAAGCTCCAGTCTGACGGCGTG
>2.17|1052749|51|LR134350|CRT
TGCGGCCAGGAGGAGGTCGTTGTCGAGGCGGCCTATGAGCCTCAATGAAGT
>2.18|1052823|49|LR134350|CRT
CCTCCGCGGCGGCGACCTGGGCCGCCGGTTCATGATGCCTCAATGAAGT
>2.19|1052895|47|LR134350|CRT
ATCTCATTCGACCCGACCAAGATGAGTGGTGAGCGCCTCAATGAAGT
>2.20|1052965|50|LR134350|CRT
TCGCAATCTGGATGTTGCGTGCCTGCTCCTCGCCGTCGCCTCAATGAAGT
>2.21|1053038|48|LR134350|CRT
TCGTCCACCCGGGCGCCGCGGCACAGCGTGCGGCTGCCTCAATGAAGC
>2.22|1053109|48|LR134350|CRT
ACGTCCTTCGTCGTCGCCTCCAGGTAACCCTCCCGGCCTCAATGAAGC
>2.23|1053180|49|LR134350|CRT
CGTCGTCCTGACCGCAGCGATGTGGCTCATCGGACGGCCTCAATGAAGC
>2.24|1053252|46|LR134350|CRT
GGCGGAGATCGACAAGCTCCAGTCTGACGGCGTGCCTCAATGAAGC

CRISPR arrays and Neighbor proteins around LR134350_2

CRISPR arrays

The CRISPR arrays of LR134350_2

>merge|LR134350|2|1052713-1053321|CRISPRCasFinder,PILER-CR,CRT
ACCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACTGCGGCCAGGAGGAGGTCGTTGTCGAGGCGGCCTATGAGCCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAACCCTCCGCGGCGGCGACCTGGGCCGCCGGTTCATGATGCCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAACATCTCATTCGACCCGACCAAGATGAGTGGTGAGCGCCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAACTCGCAATCTGGATGTTGCGTGCCTGCTCCTCGCCGTCGCCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAACTCGTCCACCCGGGCGCCGCGGCACAGCGTGCGGCTGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACACGTCCTTCGTCGTCGCCTCCAGGTAACCCTCCCGGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCGTCGTCCTGACCGCAGCGATGTGGCTCATCGGACGGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACGGCGGAGATCGACAAGCTCCAGTCTGACGGCGTGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACT

>LR134350|2|2|1052713-1053321|CRISPRCasFinder
ACCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGCGGCCAGGAGGAGGTCGTTGTCGAGGCGGCCTATGA
GCCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAAC	CCTCCGCGGCGGCGACCTGGGCCGCCGGTTCATGAT
GCCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAAC	ATCTCATTCGACCCGACCAAGATGAGTGGTGAGC
GCCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAAC	TCGCAATCTGGATGTTGCGTGCCTGCTCCTCGCCGTC
GCCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAAC	TCGTCCACCCGGGCGCCGCGGCACAGCGTGCGGCT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	ACGTCCTTCGTCGTCGCCTCCAGGTAACCCTCCCG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGTCGTCCTGACCGCAGCGATGTGGCTCATCGGACG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GGCGGAGATCGACAAGCTCCAGTCTGACGGCGT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACT

>LR134350|2|1|1052714-1053320|PILER-CR
CCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGCGGCCAGGAGGAGGTCGTTGTCGAGGCGGCCTATGAG
CCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAAC	CCTCCGCGGCGGCGACCTGGGCCGCCGGTTCATGATG
CCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAAC	ATCTCATTCGACCCGACCAAGATGAGTGGTGAGCG
CCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAAC	TCGCAATCTGGATGTTGCGTGCCTGCTCCTCGCCGTCG
CCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAAC	TCGTCCACCCGGGCGCCGCGGCACAGCGTGCGGCTG
CCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	ACGTCCTTCGTCGTCGCCTCCAGGTAACCCTCCCGG
CCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGTCGTCCTGACCGCAGCGATGTGGCTCATCGGACGG
CCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GGCGGAGATCGACAAGCTCCAGTCTGACGGCGTG
CCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC

>LR134350|2|1|1052726-1053320|CRT
GCAACCCCCGAAGGGGCTGCAAC	TGCGGCCAGGAGGAGGTCGTTGTCGAGGCGGCCTATGAGCCTCAATGAAGT
GCAACCCCCGAAGGGGCTGCAAC	CCTCCGCGGCGGCGACCTGGGCCGCCGGTTCATGATGCCTCAATGAAGT
GCAACCCCCGAAGGGGCTGCAAC	ATCTCATTCGACCCGACCAAGATGAGTGGTGAGCGCCTCAATGAAGT
GCAACCCCCGAAGGGGCTGCAAC	TCGCAATCTGGATGTTGCGTGCCTGCTCCTCGCCGTCGCCTCAATGAAGT
GCAACCCCCGAAGGGGCTGCAAC	TCGTCCACCCGGGCGCCGCGGCACAGCGTGCGGCTGCCTCAATGAAGC
GCAACCCCCGAAGGGGCTGCAAC	ACGTCCTTCGTCGTCGCCTCCAGGTAACCCTCCCGGCCTCAATGAAGC
GCAACCCCCGAAGGGGCTGCAAC	CGTCGTCCTGACCGCAGCGATGTGGCTCATCGGACGGCCTCAATGAAGC
GCAACCCCCGAAGGGGCTGCAAC	GGCGGAGATCGACAAGCTCCAGTCTGACGGCGTGCCTCAATGAAGC
GCAACCCCCGAAGGGGCTGCAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG27134.1|1036144_1037410_-|Type-IV-secretion-system-protein-virB11	unknown	unknown	gnl|CDD|227297
LR134350.1|VEG27167.1|1065349_1067623_-|diadenosine-tetraphosphatase	unknown	unknown	gnl|CDD|370539
LR134350.1|VEG27143.1|1042086_1045674_-|ATP-dependent-DNA-helicase-pcrA	unknown	unknown	gnl|CDD|223288
LR134350.1|VEG27138.1|1040107_1040590_+|Ribose-5-phosphate-isomerase-B	unknown	unknown	gnl|CDD|376799
LR134350.1|VEG27136.1|1037860_1039846_+|Acetyl-coenzyme-A-synthetase	unknown	unknown	gnl|CDD|234677
LR134350.1|VEG27132.1|1035293_1036145_-|Flp-pilus-assembly-protein-TadB	unknown	unknown	gnl|CDD|227300
LR134350.1|VEG27165.1|1063779_1064958_-|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl|CDD|378223
LR134350.1|VEG27161.1|1059529_1062217_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas3	cd09696_cas3_CAS-I-U	gnl|CDD|274235
LR134350.1|VEG27141.1|1040649_1042026_+|Phosphotransferase-enzyme-family	unknown	unknown	gnl|CDD|270701
LR134350.1|VEG27159.1|1058518_1059523_-|Uncharacterised-protein	csb3	cd09764_csb3_CAS-I-U	gnl|CDD|187733
LR134350.1|VEG27149.1|1050689_1051049_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG27155.1|1055606_1055738_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG27157.1|1056751_1058359_-|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
LR134350.1|VEG27171.1|1068408_1068891_+|Excalibur-calcium-binding-domain	unknown	unknown	gnl|CDD|377566
LR134350.1|VEG27163.1|1062213_1063776_-|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl|CDD|274005
LR134350.1|VEG27153.1|1053508_1054306_+|Transposase-DDE-domain	unknown	unknown	gnl|CDD|372577
LR134350.1|VEG27151.1|1051095_1052199_+|Zeta-toxin	unknown	unknown	gnl|CDD|368892
LR134350.1|VEG27145.1|1045670_1049216_-|DNA-helicase-IV	unknown	unknown	gnl|CDD|378929
LR134350.1|VEG27169.1|1067880_1068105_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG27147.1|1050126_1050342_+|Protein-of-uncharacterised-function-(DUF3107)	unknown	unknown	gnl|CDD|378634

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
LR134350.1|VEG27157.1|1056751_1058359_-|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	8.1e-87	285.9	0.0
LR134350.1|VEG27165.1|1063779_1064958_-|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	csb1gr7	pfam09617_csb1gr7_CAS-I-U	2.7e-21	71.0	0.0
LR134350.1|VEG27161.1|1059529_1062217_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas3	cd09696_cas3_CAS-I-U	7.3e-89	293.3	3.4
LR134350.1|VEG27159.1|1058518_1059523_-|Uncharacterised-protein	csb3	cd09764_csb3_CAS-I-U	3.2e-74	244.9	0.1
LR134350.1|VEG27163.1|1062213_1063776_-|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	6.7e-76	250.9	8.9

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG27134.1|1036144_1037410_-|Type-IV-secretion-system-protein-virB11	gnl|CDD|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	5.26968e-90
LR134350.1|VEG27167.1|1065349_1067623_-|diadenosine-tetraphosphatase	gnl|CDD|370539	pfam09511, RNA_lig_T4_1, RNA ligase. Members of this family include T4 phage proteins with ATP-dependent RNA ligase activity. Host defense to phage may include cleavage and inactivation of specific tRNA molecules; members of this family act to reverse this RNA damage. The enzyme is adenylated, transiently, on a Lys residue in a motif KXDGSL. This family also includes fungal tRNA ligases that have adenylyltransferase activity. tRNA ligases are enzymes required for the splicing of precursor tRNA molecules containing introns.i.	3.26917e-28
LR134350.1|VEG27143.1|1042086_1045674_-|ATP-dependent-DNA-helicase-pcrA	gnl|CDD|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.28109e-65
LR134350.1|VEG27138.1|1040107_1040590_+|Ribose-5-phosphate-isomerase-B	gnl|CDD|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	3.20691e-51
LR134350.1|VEG27136.1|1037860_1039846_+|Acetyl-coenzyme-A-synthetase	gnl|CDD|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
LR134350.1|VEG27132.1|1035293_1036145_-|Flp-pilus-assembly-protein-TadB	gnl|CDD|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	7.74121e-10
LR134350.1|VEG27165.1|1063779_1064958_-|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	gnl|CDD|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.37431e-32
LR134350.1|VEG27161.1|1059529_1062217_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	gnl|CDD|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	1.84832e-82
LR134350.1|VEG27141.1|1040649_1042026_+|Phosphotransferase-enzyme-family	gnl|CDD|270701	cd05152, MPH2', Macrolide 2'-Phosphotransferase. MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported as a mechanism for bacterial resistance in clinical samples. MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	1.47928e-59
LR134350.1|VEG27159.1|1058518_1059523_-|Uncharacterised-protein	gnl|CDD|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	6.29729e-69
LR134350.1|VEG27171.1|1068408_1068891_+|Excalibur-calcium-binding-domain	gnl|CDD|377566	pfam05901, Excalibur, Excalibur calcium-binding domain. Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognized and the evolution of EF-hand-like domains is probably more complex than previously appreciated.	2.35337e-14
LR134350.1|VEG27157.1|1056751_1058359_-|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.82402e-96
LR134350.1|VEG27163.1|1062213_1063776_-|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl|CDD|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.56987e-67
LR134350.1|VEG27153.1|1053508_1054306_+|Transposase-DDE-domain	gnl|CDD|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.30507e-29
LR134350.1|VEG27151.1|1051095_1052199_+|Zeta-toxin	gnl|CDD|368892	pfam06414, Zeta_toxin, Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.	2.31805e-15
LR134350.1|VEG27145.1|1045670_1049216_-|DNA-helicase-IV	gnl|CDD|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	5.51559e-27
LR134350.1|VEG27147.1|1050126_1050342_+|Protein-of-uncharacterised-function-(DUF3107)	gnl|CDD|378634	pfam11305, DUF3107, Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.	2.49697e-28

Protein sequences

>LR134350.1|VEG27151.1|1051095_1052199_+|Zeta-toxin
MAPGTDPAGSAQDAAARHYAVLQALRDRAGGDPLRADAPTATINNPRWFSHANGMLVPRHARSRLHQRLAAEITSAGQPAPPGARPVAILLAGPPGSGKSTSIDDVFSRGDRAITGGLTRSEFTVIDADSIKGRLIDVARADGSLEAEIKPAAVRALEAHGEHFHDLDLSSLVHEESSMIARLARSDAIAQRKNILLDQVCSSPTKTADVVSQLDAAGYSVRVVEIHATREFSLESTFGRYVAAAAQDGSARRVPTEVVESVFNPDGSSRPREAIESLVACRPSKVSEYRRYEARVLARPPVLVETGTRTSDGRVVRRRVDAPAPERSTSRPRRTKDEVLAGQRDRARALVDGARRARPAGRHGPAR
>LR134350.1|VEG27149.1|1050689_1051049_+|Uncharacterised-protein
MPRDYDCTRPWRDQLDEQAIEQMISTYAPRALERLGVERLLTVKRMIDEYRAGNLSRDELVVLAAHYDGLTVAPTPVGEDPEPAPAEGSCGWDVYMAGSHDLIDGELYDELLSSMKSDG
>LR134350.1|VEG27147.1|1050126_1050342_+|Protein-of-uncharacterised-function-(DUF3107)
MQVTIGIKHSPRELTVETSASQAEVLAALAGASAQDVTLTDDKGSKVFIPAGSLAYVEIGEATPRRVGFGI
>LR134350.1|VEG27145.1|1045670_1049216_-|DNA-helicase-IV
MDNDSAPLAPRLLPALPHSPLPEPDAAARAVLKRSAQGGNLVVLGAPGTGKTSLALRLLVQAVTAGREALLLAPTRARADAARQRSAHLLREAGAGGGAPRVRTPAGFAFTVLTTSLTRRPDPLPAPVLLAGAEEDAALAALIRPEQWPDLPPEAVASRAFRSELRNLLARAGELDVDAQTLAELGRSLDVPVWGPAAALLHLWDAQGRPTAGTRSLTRRLDTARIQDRAVEALATWDADAVAEPRPVPDLVVVDDYQDCTAATARLLAALATPDAAGHRAQVVVLGDPDVAVETFRGGAPSLLVEAEDRSGLAAQRLTLTTSHRGNPALAAVWADQAQRLPVTGTASHRLPEPPSAPASPAPSGVLPVIASTPAQEAAHVARALRAEHIHHDTPWEQMAVIVRSAGHLQRVSRELRRRGVPLGTSTPAVLLRAEPAAAALLEVARAALQGRLGQVGRPPERPAALNLLTSPLIGLTALDLRRLRRRLRGDDPTAPSADHQLLEALASPSAAQGLADRLTGQPLAEQAAALLRAATVIDALRTALGTPPGAQDGTAPGQEPAPGQEPVPEDPEVPSPETDHTEDQADDHTEDQATDIETLLWAAWEASGCATRWRALALGGGGTGEHTDPVLAEAAERDLDVVTALFKRAEVWSERNPGSPAGAFLTELAEEVLPSDSVAPQGQRPPGVAVLTPAAAAGCQWEVVAVMGLNRDAWPDLRLRDSITRSGLLVEAVMDRLPTDDAGLRTALKDSAAARAQVRADERRMLLAALSRASRRLIVTAASDEDTAPSTFHAEIAQAAGLPVTDADGSPLTSPDVGDLTLRGLVGELRHAAVTGHLPGATDPERRRAEHAAGLLARLAQEGVPGAHPSDWQGLEGPTSCAPLVGPTAPVRVSPSDVEALTTCPLQWFLRRQGADSGPSPAQGLGVLIHALAEEAQREGLRGQALMDRLEQRLPELAYPDTWLGRQATERAREMVRRLDAYLASVPGDVEVEQPVDVLLDLPRPAQGDAAPRDPAGDDTGDPAGHDPQDGTGTRLQVRVHGRVDRIEHLDAPADGPQRVRVIDLKTGARKPTDPAHHPQLATYRLALEAQGRQVAGAGLVLLGKNPTRTDPGASLEPSGAALAPSPDPDTGQDWAAELLAAAAVSACGPLLEARTGPHCTHCEVKDSCPAVPEGRSAHR
>LR134350.1|VEG27143.1|1042086_1045674_-|ATP-dependent-DNA-helicase-pcrA
MSTAPTPQELASALGLHAPTDEQARVIAHRLSPLLVVAGAGSGKTATMSQRVVHLVARGAVRPDQVLGLTFTRKATAELAQRVSARLEALGSTGVLEADPDAPEPTIATYNSFAASLVRDHGLRIGIDPEATLITEARAWQIASEIVQARTDPLPVQTLSSAVAAVLRLDAALSENLLTIEQAARDLEDLTALFEGLAAVRGLKTALGQAPARTAERLGMLEAVAAFQERKRSHALITFGDQIALACRIAENVPEAAAQVRAQYPAVLLDEFQDTSVAQVRLLSALFAGSGVTAVGDPNQAIYGWRGASAGALDSFHTHFNPAGTAALDAGADPRQATPVLPLSTAWRNDLAVLEAANVVSAPLRHHVPAPGDAQVTHIPVEPLRPRPAEAGVARGQVHAAFTSDPLAEAEVVADFMAERWRPDAELAVLARVRSAFPVLAQALEARGIPYEIVGLGGMLTVPEVADVRALVTVAADPERGDRLMRLLTGAGLGATDLRALSAHARTLARGGARTPARAQEPEAGPAEAAGHAGPTGPAEAAGPAGPAGARTASDRSGEPGAGAREDTPLLAEAVDAVARHADAARDAAGTTGPAQRPRGGQPRAVEGLSPAGARAVDRIARAVRRVRGALTLALPDVLVLAEQALGLDVEVAARVGNPMGRRALDALRTIAEQYAADVPDATVVGFLTWLDVAADQENGLDAPVVEPEPGAVQLLTVHAAKGLEWDAVAVVGLSEKSFPSYSTEPRSDLSVSDSSWMTRLDEFPHPMRSDAATLPPFEIGALEPPNVDKEEVKVALADYRLALGRHGLAEERRLAYVAITRARHEVLLTGSHLTGTATKPRPMSRFLAELWRRDLLSPLGPGLTDLDPEAANPLAGHSLTATWPPPDPQDDMTRARRAAARAVSQASAHLPGQAHRPPTGTAAPRDATGPDDTDATGPDDTQVSDGPGQVGGPRPQAGEGAPPPGPTDPLVARWREETELLLAERARRRAERPTVVLPDHLAATKVDDLRADPDRFALDLRRPLPPQPRAAGRLGTVFHEALATRLAEQGELISLTEAGVPDSLSRRDRDRVERWLTTAEELPLLAGHVLTDTETELELTLAGTTLRCRLDAVFWNPATSTWLIVDWKTGRRRVPVDQLSVYVHAWAAAHGVGTQAVRAAYVYVDPPGGQVDELRAEALLSLDQIEALLRLENG
>LR134350.1|VEG27141.1|1040649_1042026_+|Phosphotransferase-enzyme-family
MSQPPTGPTDTSPQEASSPEAAQEPAARVPARSPLALAAMAAVAVPGLDPARLALPQTESPTLRVVGVVDTQGRHWEVLEARDDATGADLDAEAEVLRRIGRVVDDGRLSFDVPRPAGTLRSEGRHVQVRSHLAGRPVDVDALRPGPGLSAGVGKALGELHELPVSVVSEAGLPVYDAQDVRGRWLGLLDDAAATGRVPPALLARWEAALEDTSLWRFRPVVVHGDLDAENILTAGGAVVGMLGLSQAHVGDPAEDMAWVYSSVPVDSLDSIEGAYDMARAEGVDKHLRDRAELVSELSLARWLLHGVRSEQEEVVEDAVAMLRDLADQVGDEPLVERREPRLAPVPGERVAASPSAATSEVKMVVVRDEDDAEDPGGSGRPAGPVDAAGSGRSPSSGRSAGSATSGRSAGSAGSGGSADAAGSADAAGGQEAGEARRTDGERGPEGGGVIGFPTQGA
>LR134350.1|VEG27138.1|1040107_1040590_+|Ribose-5-phosphate-isomerase-B
MRIALASDHAGFALKREIAGWLESQGHSTEDFGAPGTDPADLSDHVYPAALAVATGRADRGVFVDGVGYGSALIANRIRGVTAVVCQDPFCGRLAREHTDSNVLCLGGKIIGSAIALEVVRVWMTTEFLDEPKYRARVAKVEQISQRHLVALEDLDLGLS
>LR134350.1|VEG27136.1|1037860_1039846_+|Acetyl-coenzyme-A-synthetase
MTATTPQHPTAPEEARRTAQAPQAPQAPQAPQAPEGTEMIHPGPQVLDKAWVADWKEQEERAGADLEGYWARRAAELEWSEPWTAVLEDSEAPFYRWFVGGRTNIVTNAVDRHLTNAHRNKLALIWVGEDVEQVRTFSYFDLGIEVERMANVLKAMGVGKGDVVTIYLPRIPEVFFAMLACAKLGAVHSVVFAGYSSEALGARIDDSESKVVITADGSWVNGKVFPLKRIVDEAVRFSPTVQNVIVVRNTGSEVVMDPIRDHWYHELCKLPIAKGRCETVQVDAEDPLFILYTSGSTGRPKAILHSHGGYMVGTYVTLHDCFDIHDEDRWWCTSDPGWITGHSYLVYGPLLNGATVFMYEGNPTFPYPDRWWNLIERYGITSFYTAPTAIRTLMRFGEAWVRRHDLSSLRLLGSVGEPLNPEAWRWFHHVVGADRCPIIDTWWQTETGMFQITTVPSMPQKPGAAGRPVFGQEAAVVDEEGREVPDGVEGHLVLKRPWPAMMRTLYRDPQRYVDTYWSRYPGMYLTGDSAKRDADGWFWIIGRTDDVIKVSGHRLGTAEIESALVSHPAVAEAAAIGLPHEVKGHAVHVAVILATGVEPSRQLEAELRQHVAATLSPIAKPESFDFPESLPKTRSGKILRRVLRARALGQDEGDLSTLDGD
>LR134350.1|VEG27134.1|1036144_1037410_-|Type-IV-secretion-system-protein-virB11
MDAPTLLRDEVRELVRRRGVDPLHDTAALEALVAEASGDYLRRADAGLVPPLVDPDAVGAEVVDSLAGLGPLQPYLDDDSIEEVWCNAPGRVFVARSGRPELTTTILEDEDLRVLVERMLRASGRRLDLSSPFVDAQLPGGERLHVVIPPITSRHWAVNIRKHTARAQRTADLVRMGSLTERAGAFLDASVQAGLNILVSGATQAGKTTMVRALAGAVPAGQRVITCEEVFELSLRNRDCVAMQTRPANLEGVGEINLRRLVKEAMRMRPDRLLIGEVREAEALDLLIAMNSGLPSMSTLHANSAREAVVKICTLPLLAGENVSAAFVVPTVAAAVDLVVHLDLDSTGRRRVREIAALSGRVENGVIELSDVFHRDGADRLVRGPGMPPDPARFARAGHDLAALLADRRAPALRARTGEGS
>LR134350.1|VEG27132.1|1035293_1036145_-|Flp-pilus-assembly-protein-TadB
MGAVAGLFAGTGLVLLWLAATTDPPAWRSERQRRLSDLLVQAGVGRTSPAVFVAGSLVLGLVVALGFLGASGAWSIAIAFGTIAAGAPFAAVSSRARARRTSLREVWPEAIDTLVSGVRAGMSLPEALANLAERGPEAVREELRAFAVDYATTARFDLALDRLKARFADPVADRIVEALRLAHEVGGSDLGALLRSLSRMLREDLRTRGELEARQSWTVNGARVAVAAPWLVLALLSTRPQAAAAYATTAGALVLLVGAVTSVVAYRLMLRLGRLPEEDRVLR
>LR134350.1|VEG27153.1|1053508_1054306_+|Transposase-DDE-domain
MLSYRATLDVPSATARTVSAWLAAHRRWHDIRPHQRAATPWVQAVMVLRWLNEATSMRTLARDAGISIATAYRYLHEALQVISSQAPDLIEVITQLRHKGEPFVCLDGTLIRTDRVAARTERGNHSWYSGKHKAFGGNVQVITDHTGFPVWVSPVEPGSTHDLTAARAHALPALYKAASQGMPTLADKGYIGAGIGVLTPVKGARPCPDDATYNHLHASLRSPAERANAMLKHFKALQHVTLDPHTITHITATALVIISLNKQPR
>LR134350.1|VEG27155.1|1055606_1055738_+|Uncharacterised-protein
MKRNIGALAVAVAQAIQQSAGCASMKRNPRRGCNSETLKASRT
>LR134350.1|VEG27157.1|1056751_1058359_-|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO
MEARLSVDPIPISLVIHSVYCPRRAWLESVGENTDTMQMQAGRDAHRRADRREDSRPSEHRAVDVRSEELGLSGRCDVVEGVTGGPVTVVEYKATPVRRRPEVTRANRLQLALQVLCLKEMGFEIDGTEVYFTGHRRRVEVALTDADYLEARNAVEHTRHIVAQNRAPAPLENSRQCEWCSHASVCLPDERRYEAVRRRVVVQDPDSQIVHAATAGSRASLRAGRLEVTKSGEELLSVPIERVLGLVVHGNVDVSSALIRELCWRNRTLVWCSWSGRVVGWANGADSPNGLQRVQQHVASAEGRLDIAQQFVSAKIANQATLLRRNGDALEAVERMRELQRKVLRSGSLVEVMGAEGEAAGLYFGAFGTMLSGNTASFAAARWSGRHRRPAPDPVNAALDYTYALLLGDCVRACVSCGLDPHAGFLHSSSRNKPALALDLMEEFRAPVADSVVVRSLRNGELGEDDFVDMMGACRLSDRGRKQLIAGFERRVETSFRHPVFGYHVTWRRAIEVQARLVLGCIDGSQPSYRGVTVR
>LR134350.1|VEG27159.1|1058518_1059523_-|Uncharacterised-protein
MYIAGSINSALTTFAGLGLAHILEHSGVEGVRLGWTDAEEPRLAIEAEHLTTLDICEHVRRHAVECMNPESWVQQDLDAAPWKGKAAVLSPRIKQPGRDSEWLSLQDERNEVIDATIESAGCAGALDLIGALGEPSYWSHRNGVQCPDYGASRWEMKTRNRGEDFVRNRMRSLVSIVSQRDTEAVCDGLTGKVVRDEAYREKRSSDSRTATGLTRPQFTDSALAWCGLWGLASFPTVPRLEHCAVTAGAIPVGEYRVKSIVLPLMVGGYSLARWRAVLASGQLVNAVANEGRSARAWLVRHGARALALHRVHYIGSSNAPERYLGVGDVLVIAG
>LR134350.1|VEG27161.1|1059529_1062217_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)
MIAVEEFADFFEAVHGPGIRPFSWQTALLEALVTEGAWPEQIAAPTGAGKSSVVEIHVFATAMAALGLAPRLPRRLAVVVNRRAITDAHAQRAHDLLSLLEQTPDGETSVVGRVRDALVGLRPPEAQDRRPLVVTTMRGALVSDSQWLNAPEACAILCMTPAMWVSSLLFRSYGASRFARPRLAGLLSTDAVVVLDEAHLNRQVLVTARRVAALAANGAEALGVPGLAVVEMTATPSSRAASTAGVTRASIEDDERLARRMRCRKEITYLPYGEEAWPPGRGRQECAFYDRVVEQVSAEVERVRAQADPAPRTVGCVVNRVSTAVEVAKTLRSQGLRCTVWVGRMRPWDLERLRREVPGLFTTAGAEGVDVLVATQTVEVGVDIDLAGMVTELASGSAIAQRLGRVNRLGLRERSRVVVIGPSEDMKLTKDALPYRATDLDKGRRWVLARQVAGSASPLDIAENPPDPEAPTRVLWQRPEPWDVDLWSKTSMDLVAEPELDLWIRDDLEREVENVGVVVRDLLALVDGSSVLELVKKVPPEDCEAFPIPIGEARSLVKRILDDPDLARTASVLWRGGEPVAQWELAVASHMMAHETSQEAERLLRPGDTLIVDATIPFLTEGVARADGRDCAEPVPASVLAGVVDVVTDPERLGQLAQLSEEEREEHFPDCLWEWATPSDGSDEPQWLVVRRGLVVDDDSDERSTCSPVAGVLLADHNRDVADRAHRLAQLIGTGADVREILKEAGGWHDIGKRDDRFQRLLEADGEARAKSRLRPGRPVRRAWVEAGLPAGWRHEVASAAAYWEATVPGTGVPRDTRDLVARLIGTSHGRGRPLFDHDPTTAGPHHETALGELLGEGEWEALIARTDRVWGHWGCAYMEALLRAVDCSISAEGK
>LR134350.1|VEG27163.1|1062213_1063776_-|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MSPVGITARFILGVYHGHAADGSPETLPSPSRLFSALVSAALTGSRATENGGPDPAHLHALRWLEANPPTGMRLPEALPVSSSQGDRVAYRETGTIANNTKAPKKQATTVSDGAAVGSAITWTWDLMPGEVRHGLETLCEDVPCLGENDSPVVMEICEVEPTWRLDTGATAFTPGGLRVHVAAPGRIDALQRAHDLARPPKPPTAPQDRFRPSADEVRVFPVTTECLRTLRYEPISCDPGGSPWGEVLLVSIEEDTDEADIAPHRRLGWCVAFHRALVKRIGDGAPAVVTGRYPADARIPSNRLAIQYLSPSSLVLSRHRGLVGDRGAFAVMLPRDISDDDAEVVRRALAGMSFLRSRWGGAVVRPVDAVVEAGSFWTPSPPGTVRLWSPTPAAVPEVTKQRGDWTFEDAILLSLGFVYRDDLGVAERGGRAYRELVSRVRDHGASVMWYKRLTARPADYAHRMPEGMVAQPYSALLSAGDLIAPTALVVMGQSRHLGGGLLIPVDLPEELAAVAQGRRP
>LR134350.1|VEG27165.1|1063779_1064958_-|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system
MPALTFQQLLAACRAGGPSVLTSVTRLEPAAGPHASVAPAKFVERDKSVFAYERRFWEGRAVEAVLIDSKQSQNNRLEAAIATAIADGDPVLSTMPRIELRFDNGLSLTDVQLPHRAFDGQLRAGTINGSPTTSVPEYRELRDATASHARPLLERSPMTLLLGGWDASRKSHQGRYRSILVGEIIGILADQEEGPSRHSMRGGARIDPVGMRIDLSEEQRKKIAQAQKDELSASTYKNAGKKKASVLGLGGIPPALDQLGGVACQAIIRSHVLSFSALRGLRFDSESPEGDAACRAVLAALAINGLARSDAELLLRANCDLVEAEPAVVTLDKRYGDKERVDALSVDEASSLLAEAIDYAREHGGLVWDGSALVVEGNPDVLRAAGDEQQDE
>LR134350.1|VEG27167.1|1065349_1067623_-|diadenosine-tetraphosphatase
MTKGGARMRTLFILRGAPGSGKSTLIRHHRLSELALGLDDFRRLYSTPFTDLDGQPTLSMAYGAERKVVAAYKDAVETRLQMGATLLLDATNPNRRSWGAYAEFAERCGYTVHVINVQGDLDDDELLARNATRRGTIDYVTPQAVTSIAAKVRGAGALREPVVGFEDVRRLNTLVERDLTGVYDRLVLIGDVQSCAGALDKVRRHYGGWASDTLFVLTGDLFDRGPDAAGVLDVLGEPVPDNVVLVEGNHDEHLRHVVGGLPGARWSHTRTSLEQILASGRTKRDVTDLLGRMRPALALRFAGRSWLVTHAGLDAVTLERVMSVDEATGLRSYDLTTVPMRQLLLGSSSREQTYLGRSDYDRDVEALLSHAEVVQVHGHRNGTRDQGPGPERAAPNVVTLEHGVENGGHLSVLEVRADGVETILTFTDEPLAGGERAQGGWCTEPGSLMARMVAHPEVRIRDVEGLPGVVACNFTRRAFVKGVWDETSCKARGLFLQARSSRVVARGYDKFFNLGQAPGPADLGAVVRAGEGMPLTVRRKWNGFLAIVAVVDGSLRVLSKAGVTPYAQLAHEMLLAHLGPGEEELAGLLEEAGASLTFEVISRRDPHIVDEGEDKVVLLDAVRNQEQMELIEPLRLEVAERFGFISPQVEVISQAAGREDVEALAARARASEEARDEGFVISYGQGLMTKYKSRYYSEVKAFRALLERSLAGREVRPGSRGWSLYERYLDHGETSEFLVPDPMRPGAVDIPALVRSL
>LR134350.1|VEG27169.1|1067880_1068105_-|Uncharacterised-protein
MFVRREAIAVRCDHEGCDRMVAHRVVDTVHDPDGTAIERVLALSYTERDALRAAERDGFKIIASHVFCEKHDRV
>LR134350.1|VEG27171.1|1068408_1068891_+|Excalibur-calcium-binding-domain
MAALGACSAPTPVTVVETGTVAPVAFADTATTASSSPSPTGPSAAEASASAEASRLAAEAAASASAEASRLAAEEQAAAEAQRQAEEQTAAEAQRQAEEQAAAEAQRQAEEQAAQAPAAQQDTYYANCSEARAAGVYPLYVGEPGYRAELDRDDDGIACE

Crispr_ID: LR134350_3

• CRISPR_ID: LR134350_3
• CRISPR_location: 1054311-1056274
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 27 spacers
• Cas_protein_info: cas1,csb3,cas3,csb2gr5,csb1gr7

Consensus repeat of LR134350_3

Consensus_repeat	Method
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CRISPRCasFinder
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CRT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACC	PILER-CR
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	PILER-CR
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CRISPRCasFinder

spacers of LR134350_3

>3.1|1054347|37|LR134350|CRISPRCasFinder,CRT
CCGACCACATCACTCCGGTTGCCGAGGGAGGAGCCAT
>3.2|1054420|34|LR134350|CRISPRCasFinder,CRT
CCGGCGCAGACGGCGACACGATGCGGGCGGCGTC
>3.3|1054490|39|LR134350|CRISPRCasFinder,CRT
CTGGGGAGCGGACGGACAGTCCCATCAGGGTGTCGTTGA
>3.4|1054565|33|LR134350|CRISPRCasFinder,CRT
GGGTGACGGCGCCCTTTATGCGGAGTGCGAGGT
>3.5|1054634|34|LR134350|CRISPRCasFinder,CRT
CGAGCCACGCGACGCAGATCCGGGGCGTGTAGTC
>3.6|1054704|34|LR134350|CRISPRCasFinder,CRT
ATGCGTGGGACTGCTCTGGCCTGGTGCAGGCAGC
>3.7|1054774|37|LR134350|CRISPRCasFinder,CRT,PILER-CR
CGGCGGACCTGTGCGCCCTGTGCGACAGTGAGGCGCT
>3.8|1054847|36|LR134350|CRISPRCasFinder,CRT,PILER-CR
CGCGAGGACGTCCACCACATAGGCGTACACCGTGTA
>3.9|1054919|37|LR134350|CRISPRCasFinder,CRT,PILER-CR
TGTGGTGGCCGCTCAGGACGCTGCCGACACGATGGTC
>3.10|1054992|38|LR134350|CRISPRCasFinder,CRT,PILER-CR
AGGTTGGCGATGGTGGCGTACGTGGCGTTAGCGGTCGC
>3.11|1055066|38|LR134350|CRISPRCasFinder,CRT,PILER-CR
GCCGCGGATCGCATGAACGCCGGCTTGACCGTGACTCC
>3.12|1055140|35|LR134350|CRISPRCasFinder,CRT,PILER-CR
GACGACGGCTTGACCGAGAACGTGGACTGGCCGAT
>3.13|1055211|36|LR134350|CRISPRCasFinder,CRT,PILER-CR
GCGGCGGTCCCACGTCCCGGACGCGTCGTGCGCGGA
>3.14|1055283|34|LR134350|CRISPRCasFinder,CRT,PILER-CR
GCCTGAGAGCCTACGAGGAGCAGATCATGGCTTC
>3.15|1055353|35|LR134350|CRISPRCasFinder,CRT,PILER-CR
TGGGCCTCCGACACCTCGGGCAGCTCGAGGAACAG
>3.16|1055424|34|LR134350|CRISPRCasFinder,CRT,PILER-CR
TGGGCGACGCTCGCCTAGTCCCGGCGTGCGGCTT
>3.17|1055494|36|LR134350|CRISPRCasFinder,CRT,PILER-CR
CTGTACGGCCCACGAGGGGCCGTGAGAGGTGGGCCG
>3.18|1055566|35|LR134350|CRT,PILER-CR
GTGGATCTCGACTTCCTCAACAGTCAGCAGGCTGT
>3.19|1055637|36|LR134350|CRT
GCCGTGGCTCAGGCCATTCAACAGTCAGCAGGCTGT
>3.20|1055709|35|LR134350|CRT,CRISPRCasFinder
AGCGAGACACTGAAGGCCTCGCGGACATAGAGCTC
>3.21|1055780|34|LR134350|CRT,CRISPRCasFinder
CAGATCGCATGAACGCCGGCTTGACCGTGGACCT
>3.22|1055850|35|LR134350|CRT,CRISPRCasFinder
TGCTCGGGCGGGAGGTACCTGCCTGCCCCGCGGCC
>3.23|1055921|35|LR134350|CRT,CRISPRCasFinder
ACCATCGTAGGTGCGCCCCATACAGACCGGTCCGT
>3.24|1055992|33|LR134350|CRT,CRISPRCasFinder
AGATGACGCGGGGGCGTACGTCAGCGGGAGCGG
>3.25|1056061|35|LR134350|CRT,CRISPRCasFinder
CCAAGGGTGACTCCGTGTTCTGGTTCGCCCGCGAA
>3.26|1056132|36|LR134350|CRT,CRISPRCasFinder
CCCGGCGGCGATCGCGGAGCACTTAGAGGACTTGGT
>3.27|1056204|35|LR134350|CRT,CRISPRCasFinder
CAGATCGAGAAGTACCAGAACAAGCCGTCTCAAGG
>3.28|1054350|36|LR134350|PILER-CR
CGACCACATCACTCCGGTTGCCGAGGGAGGAGCCAT
>3.29|1054423|33|LR134350|PILER-CR
CGGCGCAGACGGCGACACGATGCGGGCGGCGTC
>3.30|1054493|38|LR134350|PILER-CR
TGGGGAGCGGACGGACAGTCCCATCAGGGTGTCGTTGA
>3.31|1054568|32|LR134350|PILER-CR
GGTGACGGCGCCCTTTATGCGGAGTGCGAGGT
>3.32|1055637|54|LR134350|PILER-CR
ATCGGCGCGCTGGCAGTCGCCGTGGCTCAGGCCATTCAACAGTCAGCAGGCTGT
>3.33|1055727|35|LR134350|PILER-CR
AGCGAGACACTGAAGGCCTCGCGGACATAGAGCTC
>3.34|1055798|34|LR134350|PILER-CR
CAGATCGCATGAACGCCGGCTTGACCGTGGACCT
>3.35|1055868|35|LR134350|PILER-CR
TGCTCGGGCGGGAGGTACCTGCCTGCCCCGCGGCC
>3.36|1055939|35|LR134350|PILER-CR
ACCATCGTAGGTGCGCCCCATACAGACCGGTCCGT
>3.37|1056010|33|LR134350|PILER-CR
AGATGACGCGGGGGCGTACGTCAGCGGGAGCGG
>3.38|1056079|35|LR134350|PILER-CR
CCAAGGGTGACTCCGTGTTCTGGTTCGCCCGCGAA
>3.39|1056150|36|LR134350|PILER-CR
CCCGGCGGCGATCGCGGAGCACTTAGAGGACTTGGT
>3.40|1056222|35|LR134350|PILER-CR
CAGATCGAGAAGTACCAGAACAAGCCGTCTCAAGG

CRISPR arrays and Neighbor proteins around LR134350_3

CRISPR arrays

The CRISPR arrays of LR134350_3

>merge|LR134350|3|1054311-1056274|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRISPRCasFinder
AGCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAACCCGACCACATCACTCCGGTTGCCGAGGGAGGAGCCATGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCCGGCGCAGACGGCGACACGATGCGGGCGGCGTCGCCTCAATGAAGCGCAACCCCCGAAGGAGCTGCAACCTGGGGAGCGGACGGACAGTCCCATCAGGGTGTCGTTGAGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACGGGTGACGGCGCCCTTTATGCGGAGTGCGAGGTGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCGAGCCACGCGACGCAGATCCGGGGCGTGTAGTCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACATGCGTGGGACTGCTCTGGCCTGGTGCAGGCAGCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCGGCGGACCTGTGCGCCCTGTGCGACAGTGAGGCGCTGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCGCGAGGACGTCCACCACATAGGCGTACACCGTGTAGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACTGTGGTGGCCGCTCAGGACGCTGCCGACACGATGGTCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACAGGTTGGCGATGGTGGCGTACGTGGCGTTAGCGGTCGCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACGCCGCGGATCGCATGAACGCCGGCTTGACCGTGACTCCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACGACGACGGCTTGACCGAGAACGTGGACTGGCCGATGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACGCGGCGGTCCCACGTCCCGGACGCGTCGTGCGCGGAGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACGCCTGAGAGCCTACGAGGAGCAGATCATGGCTTCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACTGGGCCTCCGACACCTCGGGCAGCTCGAGGAACAGGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACTGGGCGACGCTCGCCTAGTCCCGGCGTGCGGCTTGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCTGTACGGCCCACGAGGGGCCGTGAGAGGTGGGCCGGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACGTGGATCTCGACTTCCTCAACAGTCAGCAGGCTGTGCCTCAATGAAGCGCAACATCGGCGCGCTGGCAGTCGCCGTGGCTCAGGCCATTCAACAGTCAGCAGGCTGTGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACAGCGAGACACTGAAGGCCTCGCGGACATAGAGCTCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCAGATCGCATGAACGCCGGCTTGACCGTGGACCTGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACTGCTCGGGCGGGAGGTACCTGCCTGCCCCGCGGCCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACACCATCGTAGGTGCGCCCCATACAGACCGGTCCGTGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACAGATGACGCGGGGGCGTACGTCAGCGGGAGCGGGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCCAAGGGTGACTCCGTGTTCTGGTTCGCCCGCGAAGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCCCGGCGGCGATCGCGGAGCACTTAGAGGACTTGGTGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCAGATCGAGAAGTACCAGAACAAGCCGTCTCAAGGGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC

>LR134350|3|3|1054311-1055566|CRISPRCasFinder
AGCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAAC	CCGACCACATCACTCCGGTTGCCGAGGGAGGAGCCAT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CCGGCGCAGACGGCGACACGATGCGGGCGGCGTC
GCCTCAATGAAGCGCAACCCCCGAAGGAGCTGCAAC	CTGGGGAGCGGACGGACAGTCCCATCAGGGTGTCGTTGA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GGGTGACGGCGCCCTTTATGCGGAGTGCGAGGT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGAGCCACGCGACGCAGATCCGGGGCGTGTAGTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	ATGCGTGGGACTGCTCTGGCCTGGTGCAGGCAGC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGGCGGACCTGTGCGCCCTGTGCGACAGTGAGGCGCT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGCGAGGACGTCCACCACATAGGCGTACACCGTGTA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGTGGTGGCCGCTCAGGACGCTGCCGACACGATGGTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	AGGTTGGCGATGGTGGCGTACGTGGCGTTAGCGGTCGC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCCGCGGATCGCATGAACGCCGGCTTGACCGTGACTCC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GACGACGGCTTGACCGAGAACGTGGACTGGCCGAT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCGGCGGTCCCACGTCCCGGACGCGTCGTGCGCGGA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCCTGAGAGCCTACGAGGAGCAGATCATGGCTTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGGGCCTCCGACACCTCGGGCAGCTCGAGGAACAG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGGGCGACGCTCGCCTAGTCCCGGCGTGCGGCTT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CTGTACGGCCCACGAGGGGCCGTGAGAGGTGGGCCG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACGTGGATCTCGACTTCCTCAACAGTCAGCAGGCTGTGCCTCAATGAAGCGCAACATCGGCGCGCTGGCAGTCGCCGTGGCTCAGGCCATTCAACAGTCAGCAGGCTGTGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	AGCGAGACACTGAAGGCCTCGCGGACATAGAGCTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CAGATCGCATGAACGCCGGCTTGACCGTGGACCT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGCTCGGGCGGGAGGTACCTGCCTGCCCCGCGGCC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	ACCATCGTAGGTGCGCCCCATACAGACCGGTCCGT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	AGATGACGCGGGGGCGTACGTCAGCGGGAGCGG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CCAAGGGTGACTCCGTGTTCTGGTTCGCCCGCGAA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CCCGGCGGCGATCGCGGAGCACTTAGAGGACTTGGT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CAGATCGAGAAGTACCAGAACAAGCCGTCTCAAGG


>LR134350|3|2|1054311-1056274|CRT
AGCTCAATGAAGTGCAACCCCCGAAGGGGCTGCAAC	CCGACCACATCACTCCGGTTGCCGAGGGAGGAGCCAT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CCGGCGCAGACGGCGACACGATGCGGGCGGCGTC
GCCTCAATGAAGCGCAACCCCCGAAGGAGCTGCAAC	CTGGGGAGCGGACGGACAGTCCCATCAGGGTGTCGTTGA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GGGTGACGGCGCCCTTTATGCGGAGTGCGAGGT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGAGCCACGCGACGCAGATCCGGGGCGTGTAGTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	ATGCGTGGGACTGCTCTGGCCTGGTGCAGGCAGC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGGCGGACCTGTGCGCCCTGTGCGACAGTGAGGCGCT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGCGAGGACGTCCACCACATAGGCGTACACCGTGTA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGTGGTGGCCGCTCAGGACGCTGCCGACACGATGGTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	AGGTTGGCGATGGTGGCGTACGTGGCGTTAGCGGTCGC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCCGCGGATCGCATGAACGCCGGCTTGACCGTGACTCC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GACGACGGCTTGACCGAGAACGTGGACTGGCCGAT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCGGCGGTCCCACGTCCCGGACGCGTCGTGCGCGGA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCCTGAGAGCCTACGAGGAGCAGATCATGGCTTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGGGCCTCCGACACCTCGGGCAGCTCGAGGAACAG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGGGCGACGCTCGCCTAGTCCCGGCGTGCGGCTT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CTGTACGGCCCACGAGGGGCCGTGAGAGGTGGGCCG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GTGGATCTCGACTTCCTCAACAGTCAGCAGGCTGT
GCCTCAATGAAGCGCAACATCGGCGCGCTGGCAGTC	GCCGTGGCTCAGGCCATTCAACAGTCAGCAGGCTGT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	AGCGAGACACTGAAGGCCTCGCGGACATAGAGCTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CAGATCGCATGAACGCCGGCTTGACCGTGGACCT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGCTCGGGCGGGAGGTACCTGCCTGCCCCGCGGCC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	ACCATCGTAGGTGCGCCCCATACAGACCGGTCCGT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	AGATGACGCGGGGGCGTACGTCAGCGGGAGCGG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CCAAGGGTGACTCCGTGTTCTGGTTCGCCCGCGAA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CCCGGCGGCGATCGCGGAGCACTTAGAGGACTTGGT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CAGATCGAGAAGTACCAGAACAAGCCGTCTCAAGG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC

>LR134350|3|2|1054313-1054634|PILER-CR
CTCAATGAAGTGCAACCCCCGAAGGGGCTGCAACCCG	ACCACATCACTCCGGTTGCCGAGGGAGGAGCCATGC
CTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCCG	GCGCAGACGGCGACACGATGCGGGCGGCGTCGC
CTCAATGAAGCGCAACCCCCGAAGGAGCTGCAACCTG	GGGAGCGGACGGACAGTCCCATCAGGGTGTCGTTGAGC
CTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACGGG	TGACGGCGCCCTTTATGCGGAGTGCGAGGTGC
CTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCGAGCCACGCGACGCAGATCCGGGGCGTGTAGTCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACATGCGTGGGACTGCTCTGGCCTGGTGCAGGCAGCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGGCGGACCTGTGCGCCCTGTGCGACAGTGAGGCGCT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGCGAGGACGTCCACCACATAGGCGTACACCGTGTA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGTGGTGGCCGCTCAGGACGCTGCCGACACGATGGTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	AGGTTGGCGATGGTGGCGTACGTGGCGTTAGCGGTCGC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCCGCGGATCGCATGAACGCCGGCTTGACCGTGACTCC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GACGACGGCTTGACCGAGAACGTGGACTGGCCGAT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCGGCGGTCCCACGTCCCGGACGCGTCGTGCGCGGA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCCTGAGAGCCTACGAGGAGCAGATCATGGCTTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGGGCCTCCGACACCTCGGGCAGCTCGAGGAACAG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGGGCGACGCTCGCCTAGTCCCGGCGTGCGGCTT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CTGTACGGCCCACGAGGGGCCGTGAGAGGTGGGCCG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GTGGATCTCGACTTCCTCAACAGTCAGCAGGCTGT
GCCTCAATGAAGCGCAACATCGGCGCGCTGGCAGTC	GCCGTGGCTCAGGCCATTCAACAGTCAGCAGGCTGTGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACAGCGAGACACTGAAGGCC	TCGCGGACATAGAGCTCGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACCAGATCGCATGAACGCCG	GCTTGACCGTGGACCTGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACTGCTCGGGCGGGAGGTAC	CTGCCTGCCCCGCGGCCGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACACCATCGTAGGTGCGCCC	CATACAGACCGGTCCGTGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACAGATGACGCGGGGGCGTA	CGTCAGCGGGAGCGGGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACCCAAGGGTGACTCCGTGT	TCTGGTTCGCCCGCGAAGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACCCCGGCGGCGATCGCGGA	GCACTTAGAGGACTTGGTGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACCAGATCGAGAAGTACCAG	AACAAGCCGTCTCAAGGGCCTCAATGAAGCGCAAC


>LR134350|3|3|1054738-1056274|PILER-CR
	ACCACATCACTCCGGTTGCCGAGGGAGGAGCCATGC
CTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCCG	GCGCAGACGGCGACACGATGCGGGCGGCGTCGC
CTCAATGAAGCGCAACCCCCGAAGGAGCTGCAACCTG	GGGAGCGGACGGACAGTCCCATCAGGGTGTCGTTGAGC
CTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACGGG	TGACGGCGCCCTTTATGCGGAGTGCGAGGTGC
CTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACCGAGCCACGCGACGCAGATCCGGGGCGTGTAGTCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACATGCGTGGGACTGCTCTGGCCTGGTGCAGGCAGCGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGGCGGACCTGTGCGCCCTGTGCGACAGTGAGGCGCT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGCGAGGACGTCCACCACATAGGCGTACACCGTGTA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGTGGTGGCCGCTCAGGACGCTGCCGACACGATGGTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	AGGTTGGCGATGGTGGCGTACGTGGCGTTAGCGGTCGC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCCGCGGATCGCATGAACGCCGGCTTGACCGTGACTCC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GACGACGGCTTGACCGAGAACGTGGACTGGCCGAT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCGGCGGTCCCACGTCCCGGACGCGTCGTGCGCGGA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCCTGAGAGCCTACGAGGAGCAGATCATGGCTTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGGGCCTCCGACACCTCGGGCAGCTCGAGGAACAG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGGGCGACGCTCGCCTAGTCCCGGCGTGCGGCTT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CTGTACGGCCCACGAGGGGCCGTGAGAGGTGGGCCG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GTGGATCTCGACTTCCTCAACAGTCAGCAGGCTGT
GCCTCAATGAAGCGCAACATCGGCGCGCTGGCAGTC	GCCGTGGCTCAGGCCATTCAACAGTCAGCAGGCTGTGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACAGCGAGACACTGAAGGCC	TCGCGGACATAGAGCTCGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACCAGATCGCATGAACGCCG	GCTTGACCGTGGACCTGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACTGCTCGGGCGGGAGGTAC	CTGCCTGCCCCGCGGCCGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACACCATCGTAGGTGCGCCC	CATACAGACCGGTCCGTGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACAGATGACGCGGGGGCGTA	CGTCAGCGGGAGCGGGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACCCAAGGGTGACTCCGTGT	TCTGGTTCGCCCGCGAAGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACCCCGGCGGCGATCGCGGA	GCACTTAGAGGACTTGGTGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAACCAGATCGAGAAGTACCAG	AACAAGCCGTCTCAAGGGCCTCAATGAAGCGCAAC
CCCCGAAGGGGCTGCAAC

>LR134350|3|4|1055673-1056274|CRISPRCasFinder
	CCGACCACATCACTCCGGTTGCCGAGGGAGGAGCCAT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CCGGCGCAGACGGCGACACGATGCGGGCGGCGTC
GCCTCAATGAAGCGCAACCCCCGAAGGAGCTGCAAC	CTGGGGAGCGGACGGACAGTCCCATCAGGGTGTCGTTGA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GGGTGACGGCGCCCTTTATGCGGAGTGCGAGGT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGAGCCACGCGACGCAGATCCGGGGCGTGTAGTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	ATGCGTGGGACTGCTCTGGCCTGGTGCAGGCAGC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGGCGGACCTGTGCGCCCTGTGCGACAGTGAGGCGCT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CGCGAGGACGTCCACCACATAGGCGTACACCGTGTA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGTGGTGGCCGCTCAGGACGCTGCCGACACGATGGTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	AGGTTGGCGATGGTGGCGTACGTGGCGTTAGCGGTCGC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCCGCGGATCGCATGAACGCCGGCTTGACCGTGACTCC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GACGACGGCTTGACCGAGAACGTGGACTGGCCGAT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCGGCGGTCCCACGTCCCGGACGCGTCGTGCGCGGA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	GCCTGAGAGCCTACGAGGAGCAGATCATGGCTTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGGGCCTCCGACACCTCGGGCAGCTCGAGGAACAG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGGGCGACGCTCGCCTAGTCCCGGCGTGCGGCTT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CTGTACGGCCCACGAGGGGCCGTGAGAGGTGGGCCG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAACGTGGATCTCGACTTCCTCAACAGTCAGCAGGCTGTGCCTCAATGAAGCGCAACATCGGCGCGCTGGCAGTCGCCGTGGCTCAGGCCATTCAACAGTCAGCAGGCTGTGCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	AGCGAGACACTGAAGGCCTCGCGGACATAGAGCTC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CAGATCGCATGAACGCCGGCTTGACCGTGGACCT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	TGCTCGGGCGGGAGGTACCTGCCTGCCCCGCGGCC
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	ACCATCGTAGGTGCGCCCCATACAGACCGGTCCGT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	AGATGACGCGGGGGCGTACGTCAGCGGGAGCGG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CCAAGGGTGACTCCGTGTTCTGGTTCGCCCGCGAA
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CCCGGCGGCGATCGCGGAGCACTTAGAGGACTTGGT
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC	CAGATCGAGAAGTACCAGAACAAGCCGTCTCAAGG
GCCTCAATGAAGCGCAACCCCCGAAGGGGCTGCAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG27134.1|1036144_1037410_-|Type-IV-secretion-system-protein-virB11	unknown	unknown	gnl|CDD|227297
LR134350.1|VEG27167.1|1065349_1067623_-|diadenosine-tetraphosphatase	unknown	unknown	gnl|CDD|370539
LR134350.1|VEG27143.1|1042086_1045674_-|ATP-dependent-DNA-helicase-pcrA	unknown	unknown	gnl|CDD|223288
LR134350.1|VEG27138.1|1040107_1040590_+|Ribose-5-phosphate-isomerase-B	unknown	unknown	gnl|CDD|376799
LR134350.1|VEG27136.1|1037860_1039846_+|Acetyl-coenzyme-A-synthetase	unknown	unknown	gnl|CDD|234677
LR134350.1|VEG27141.1|1040649_1042026_+|Phosphotransferase-enzyme-family	unknown	unknown	gnl|CDD|270701
LR134350.1|VEG27165.1|1063779_1064958_-|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl|CDD|378223
LR134350.1|VEG27161.1|1059529_1062217_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas3	cd09696_cas3_CAS-I-U	gnl|CDD|274235
LR134350.1|VEG27159.1|1058518_1059523_-|Uncharacterised-protein	csb3	cd09764_csb3_CAS-I-U	gnl|CDD|187733
LR134350.1|VEG27149.1|1050689_1051049_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG27173.1|1068934_1069585_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|205967
LR134350.1|VEG27153.1|1053508_1054306_+|Transposase-DDE-domain	unknown	unknown	gnl|CDD|372577
LR134350.1|VEG27171.1|1068408_1068891_+|Excalibur-calcium-binding-domain	unknown	unknown	gnl|CDD|377566
LR134350.1|VEG27175.1|1069985_1071662_+|DEAD-box-ATP-dependent-RNA-helicase-CshA	unknown	unknown	gnl|CDD|223587
LR134350.1|VEG27163.1|1062213_1063776_-|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl|CDD|274005
LR134350.1|VEG27157.1|1056751_1058359_-|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
LR134350.1|VEG27151.1|1051095_1052199_+|Zeta-toxin	unknown	unknown	gnl|CDD|368892
LR134350.1|VEG27145.1|1045670_1049216_-|DNA-helicase-IV	unknown	unknown	gnl|CDD|378929
LR134350.1|VEG27169.1|1067880_1068105_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG27147.1|1050126_1050342_+|Protein-of-uncharacterised-function-(DUF3107)	unknown	unknown	gnl|CDD|378634

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
LR134350.1|VEG27157.1|1056751_1058359_-|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	8.1e-87	285.9	0.0
LR134350.1|VEG27165.1|1063779_1064958_-|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	csb1gr7	pfam09617_csb1gr7_CAS-I-U	2.7e-21	71.0	0.0
LR134350.1|VEG27161.1|1059529_1062217_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas3	cd09696_cas3_CAS-I-U	7.3e-89	293.3	3.4
LR134350.1|VEG27159.1|1058518_1059523_-|Uncharacterised-protein	csb3	cd09764_csb3_CAS-I-U	3.2e-74	244.9	0.1
LR134350.1|VEG27163.1|1062213_1063776_-|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	6.7e-76	250.9	8.9

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG27134.1|1036144_1037410_-|Type-IV-secretion-system-protein-virB11	gnl|CDD|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	5.26968e-90
LR134350.1|VEG27167.1|1065349_1067623_-|diadenosine-tetraphosphatase	gnl|CDD|370539	pfam09511, RNA_lig_T4_1, RNA ligase. Members of this family include T4 phage proteins with ATP-dependent RNA ligase activity. Host defense to phage may include cleavage and inactivation of specific tRNA molecules; members of this family act to reverse this RNA damage. The enzyme is adenylated, transiently, on a Lys residue in a motif KXDGSL. This family also includes fungal tRNA ligases that have adenylyltransferase activity. tRNA ligases are enzymes required for the splicing of precursor tRNA molecules containing introns.i.	3.26917e-28
LR134350.1|VEG27143.1|1042086_1045674_-|ATP-dependent-DNA-helicase-pcrA	gnl|CDD|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.28109e-65
LR134350.1|VEG27138.1|1040107_1040590_+|Ribose-5-phosphate-isomerase-B	gnl|CDD|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	3.20691e-51
LR134350.1|VEG27136.1|1037860_1039846_+|Acetyl-coenzyme-A-synthetase	gnl|CDD|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
LR134350.1|VEG27141.1|1040649_1042026_+|Phosphotransferase-enzyme-family	gnl|CDD|270701	cd05152, MPH2', Macrolide 2'-Phosphotransferase. MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported as a mechanism for bacterial resistance in clinical samples. MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	1.47928e-59
LR134350.1|VEG27165.1|1063779_1064958_-|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	gnl|CDD|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.37431e-32
LR134350.1|VEG27161.1|1059529_1062217_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	gnl|CDD|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	1.84832e-82
LR134350.1|VEG27159.1|1058518_1059523_-|Uncharacterised-protein	gnl|CDD|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	6.29729e-69
LR134350.1|VEG27171.1|1068408_1068891_+|Excalibur-calcium-binding-domain	gnl|CDD|377566	pfam05901, Excalibur, Excalibur calcium-binding domain. Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognized and the evolution of EF-hand-like domains is probably more complex than previously appreciated.	2.35337e-14
LR134350.1|VEG27173.1|1068934_1069585_-|Uncharacterised-protein	gnl|CDD|205967	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like.	2.4309e-25
LR134350.1|VEG27153.1|1053508_1054306_+|Transposase-DDE-domain	gnl|CDD|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.30507e-29
LR134350.1|VEG27175.1|1069985_1071662_+|DEAD-box-ATP-dependent-RNA-helicase-CshA	gnl|CDD|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	4.26393e-152
LR134350.1|VEG27163.1|1062213_1063776_-|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl|CDD|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.56987e-67
LR134350.1|VEG27157.1|1056751_1058359_-|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.82402e-96
LR134350.1|VEG27151.1|1051095_1052199_+|Zeta-toxin	gnl|CDD|368892	pfam06414, Zeta_toxin, Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.	2.31805e-15
LR134350.1|VEG27145.1|1045670_1049216_-|DNA-helicase-IV	gnl|CDD|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	5.51559e-27
LR134350.1|VEG27147.1|1050126_1050342_+|Protein-of-uncharacterised-function-(DUF3107)	gnl|CDD|378634	pfam11305, DUF3107, Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.	2.49697e-28

Protein sequences

>LR134350.1|VEG27153.1|1053508_1054306_+|Transposase-DDE-domain
MLSYRATLDVPSATARTVSAWLAAHRRWHDIRPHQRAATPWVQAVMVLRWLNEATSMRTLARDAGISIATAYRYLHEALQVISSQAPDLIEVITQLRHKGEPFVCLDGTLIRTDRVAARTERGNHSWYSGKHKAFGGNVQVITDHTGFPVWVSPVEPGSTHDLTAARAHALPALYKAASQGMPTLADKGYIGAGIGVLTPVKGARPCPDDATYNHLHASLRSPAERANAMLKHFKALQHVTLDPHTITHITATALVIISLNKQPR
>LR134350.1|VEG27151.1|1051095_1052199_+|Zeta-toxin
MAPGTDPAGSAQDAAARHYAVLQALRDRAGGDPLRADAPTATINNPRWFSHANGMLVPRHARSRLHQRLAAEITSAGQPAPPGARPVAILLAGPPGSGKSTSIDDVFSRGDRAITGGLTRSEFTVIDADSIKGRLIDVARADGSLEAEIKPAAVRALEAHGEHFHDLDLSSLVHEESSMIARLARSDAIAQRKNILLDQVCSSPTKTADVVSQLDAAGYSVRVVEIHATREFSLESTFGRYVAAAAQDGSARRVPTEVVESVFNPDGSSRPREAIESLVACRPSKVSEYRRYEARVLARPPVLVETGTRTSDGRVVRRRVDAPAPERSTSRPRRTKDEVLAGQRDRARALVDGARRARPAGRHGPAR
>LR134350.1|VEG27149.1|1050689_1051049_+|Uncharacterised-protein
MPRDYDCTRPWRDQLDEQAIEQMISTYAPRALERLGVERLLTVKRMIDEYRAGNLSRDELVVLAAHYDGLTVAPTPVGEDPEPAPAEGSCGWDVYMAGSHDLIDGELYDELLSSMKSDG
>LR134350.1|VEG27147.1|1050126_1050342_+|Protein-of-uncharacterised-function-(DUF3107)
MQVTIGIKHSPRELTVETSASQAEVLAALAGASAQDVTLTDDKGSKVFIPAGSLAYVEIGEATPRRVGFGI
>LR134350.1|VEG27145.1|1045670_1049216_-|DNA-helicase-IV
MDNDSAPLAPRLLPALPHSPLPEPDAAARAVLKRSAQGGNLVVLGAPGTGKTSLALRLLVQAVTAGREALLLAPTRARADAARQRSAHLLREAGAGGGAPRVRTPAGFAFTVLTTSLTRRPDPLPAPVLLAGAEEDAALAALIRPEQWPDLPPEAVASRAFRSELRNLLARAGELDVDAQTLAELGRSLDVPVWGPAAALLHLWDAQGRPTAGTRSLTRRLDTARIQDRAVEALATWDADAVAEPRPVPDLVVVDDYQDCTAATARLLAALATPDAAGHRAQVVVLGDPDVAVETFRGGAPSLLVEAEDRSGLAAQRLTLTTSHRGNPALAAVWADQAQRLPVTGTASHRLPEPPSAPASPAPSGVLPVIASTPAQEAAHVARALRAEHIHHDTPWEQMAVIVRSAGHLQRVSRELRRRGVPLGTSTPAVLLRAEPAAAALLEVARAALQGRLGQVGRPPERPAALNLLTSPLIGLTALDLRRLRRRLRGDDPTAPSADHQLLEALASPSAAQGLADRLTGQPLAEQAAALLRAATVIDALRTALGTPPGAQDGTAPGQEPAPGQEPVPEDPEVPSPETDHTEDQADDHTEDQATDIETLLWAAWEASGCATRWRALALGGGGTGEHTDPVLAEAAERDLDVVTALFKRAEVWSERNPGSPAGAFLTELAEEVLPSDSVAPQGQRPPGVAVLTPAAAAGCQWEVVAVMGLNRDAWPDLRLRDSITRSGLLVEAVMDRLPTDDAGLRTALKDSAAARAQVRADERRMLLAALSRASRRLIVTAASDEDTAPSTFHAEIAQAAGLPVTDADGSPLTSPDVGDLTLRGLVGELRHAAVTGHLPGATDPERRRAEHAAGLLARLAQEGVPGAHPSDWQGLEGPTSCAPLVGPTAPVRVSPSDVEALTTCPLQWFLRRQGADSGPSPAQGLGVLIHALAEEAQREGLRGQALMDRLEQRLPELAYPDTWLGRQATERAREMVRRLDAYLASVPGDVEVEQPVDVLLDLPRPAQGDAAPRDPAGDDTGDPAGHDPQDGTGTRLQVRVHGRVDRIEHLDAPADGPQRVRVIDLKTGARKPTDPAHHPQLATYRLALEAQGRQVAGAGLVLLGKNPTRTDPGASLEPSGAALAPSPDPDTGQDWAAELLAAAAVSACGPLLEARTGPHCTHCEVKDSCPAVPEGRSAHR
>LR134350.1|VEG27143.1|1042086_1045674_-|ATP-dependent-DNA-helicase-pcrA
MSTAPTPQELASALGLHAPTDEQARVIAHRLSPLLVVAGAGSGKTATMSQRVVHLVARGAVRPDQVLGLTFTRKATAELAQRVSARLEALGSTGVLEADPDAPEPTIATYNSFAASLVRDHGLRIGIDPEATLITEARAWQIASEIVQARTDPLPVQTLSSAVAAVLRLDAALSENLLTIEQAARDLEDLTALFEGLAAVRGLKTALGQAPARTAERLGMLEAVAAFQERKRSHALITFGDQIALACRIAENVPEAAAQVRAQYPAVLLDEFQDTSVAQVRLLSALFAGSGVTAVGDPNQAIYGWRGASAGALDSFHTHFNPAGTAALDAGADPRQATPVLPLSTAWRNDLAVLEAANVVSAPLRHHVPAPGDAQVTHIPVEPLRPRPAEAGVARGQVHAAFTSDPLAEAEVVADFMAERWRPDAELAVLARVRSAFPVLAQALEARGIPYEIVGLGGMLTVPEVADVRALVTVAADPERGDRLMRLLTGAGLGATDLRALSAHARTLARGGARTPARAQEPEAGPAEAAGHAGPTGPAEAAGPAGPAGARTASDRSGEPGAGAREDTPLLAEAVDAVARHADAARDAAGTTGPAQRPRGGQPRAVEGLSPAGARAVDRIARAVRRVRGALTLALPDVLVLAEQALGLDVEVAARVGNPMGRRALDALRTIAEQYAADVPDATVVGFLTWLDVAADQENGLDAPVVEPEPGAVQLLTVHAAKGLEWDAVAVVGLSEKSFPSYSTEPRSDLSVSDSSWMTRLDEFPHPMRSDAATLPPFEIGALEPPNVDKEEVKVALADYRLALGRHGLAEERRLAYVAITRARHEVLLTGSHLTGTATKPRPMSRFLAELWRRDLLSPLGPGLTDLDPEAANPLAGHSLTATWPPPDPQDDMTRARRAAARAVSQASAHLPGQAHRPPTGTAAPRDATGPDDTDATGPDDTQVSDGPGQVGGPRPQAGEGAPPPGPTDPLVARWREETELLLAERARRRAERPTVVLPDHLAATKVDDLRADPDRFALDLRRPLPPQPRAAGRLGTVFHEALATRLAEQGELISLTEAGVPDSLSRRDRDRVERWLTTAEELPLLAGHVLTDTETELELTLAGTTLRCRLDAVFWNPATSTWLIVDWKTGRRRVPVDQLSVYVHAWAAAHGVGTQAVRAAYVYVDPPGGQVDELRAEALLSLDQIEALLRLENG
>LR134350.1|VEG27141.1|1040649_1042026_+|Phosphotransferase-enzyme-family
MSQPPTGPTDTSPQEASSPEAAQEPAARVPARSPLALAAMAAVAVPGLDPARLALPQTESPTLRVVGVVDTQGRHWEVLEARDDATGADLDAEAEVLRRIGRVVDDGRLSFDVPRPAGTLRSEGRHVQVRSHLAGRPVDVDALRPGPGLSAGVGKALGELHELPVSVVSEAGLPVYDAQDVRGRWLGLLDDAAATGRVPPALLARWEAALEDTSLWRFRPVVVHGDLDAENILTAGGAVVGMLGLSQAHVGDPAEDMAWVYSSVPVDSLDSIEGAYDMARAEGVDKHLRDRAELVSELSLARWLLHGVRSEQEEVVEDAVAMLRDLADQVGDEPLVERREPRLAPVPGERVAASPSAATSEVKMVVVRDEDDAEDPGGSGRPAGPVDAAGSGRSPSSGRSAGSATSGRSAGSAGSGGSADAAGSADAAGGQEAGEARRTDGERGPEGGGVIGFPTQGA
>LR134350.1|VEG27138.1|1040107_1040590_+|Ribose-5-phosphate-isomerase-B
MRIALASDHAGFALKREIAGWLESQGHSTEDFGAPGTDPADLSDHVYPAALAVATGRADRGVFVDGVGYGSALIANRIRGVTAVVCQDPFCGRLAREHTDSNVLCLGGKIIGSAIALEVVRVWMTTEFLDEPKYRARVAKVEQISQRHLVALEDLDLGLS
>LR134350.1|VEG27136.1|1037860_1039846_+|Acetyl-coenzyme-A-synthetase
MTATTPQHPTAPEEARRTAQAPQAPQAPQAPQAPEGTEMIHPGPQVLDKAWVADWKEQEERAGADLEGYWARRAAELEWSEPWTAVLEDSEAPFYRWFVGGRTNIVTNAVDRHLTNAHRNKLALIWVGEDVEQVRTFSYFDLGIEVERMANVLKAMGVGKGDVVTIYLPRIPEVFFAMLACAKLGAVHSVVFAGYSSEALGARIDDSESKVVITADGSWVNGKVFPLKRIVDEAVRFSPTVQNVIVVRNTGSEVVMDPIRDHWYHELCKLPIAKGRCETVQVDAEDPLFILYTSGSTGRPKAILHSHGGYMVGTYVTLHDCFDIHDEDRWWCTSDPGWITGHSYLVYGPLLNGATVFMYEGNPTFPYPDRWWNLIERYGITSFYTAPTAIRTLMRFGEAWVRRHDLSSLRLLGSVGEPLNPEAWRWFHHVVGADRCPIIDTWWQTETGMFQITTVPSMPQKPGAAGRPVFGQEAAVVDEEGREVPDGVEGHLVLKRPWPAMMRTLYRDPQRYVDTYWSRYPGMYLTGDSAKRDADGWFWIIGRTDDVIKVSGHRLGTAEIESALVSHPAVAEAAAIGLPHEVKGHAVHVAVILATGVEPSRQLEAELRQHVAATLSPIAKPESFDFPESLPKTRSGKILRRVLRARALGQDEGDLSTLDGD
>LR134350.1|VEG27134.1|1036144_1037410_-|Type-IV-secretion-system-protein-virB11
MDAPTLLRDEVRELVRRRGVDPLHDTAALEALVAEASGDYLRRADAGLVPPLVDPDAVGAEVVDSLAGLGPLQPYLDDDSIEEVWCNAPGRVFVARSGRPELTTTILEDEDLRVLVERMLRASGRRLDLSSPFVDAQLPGGERLHVVIPPITSRHWAVNIRKHTARAQRTADLVRMGSLTERAGAFLDASVQAGLNILVSGATQAGKTTMVRALAGAVPAGQRVITCEEVFELSLRNRDCVAMQTRPANLEGVGEINLRRLVKEAMRMRPDRLLIGEVREAEALDLLIAMNSGLPSMSTLHANSAREAVVKICTLPLLAGENVSAAFVVPTVAAAVDLVVHLDLDSTGRRRVREIAALSGRVENGVIELSDVFHRDGADRLVRGPGMPPDPARFARAGHDLAALLADRRAPALRARTGEGS
>LR134350.1|VEG27157.1|1056751_1058359_-|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO
MEARLSVDPIPISLVIHSVYCPRRAWLESVGENTDTMQMQAGRDAHRRADRREDSRPSEHRAVDVRSEELGLSGRCDVVEGVTGGPVTVVEYKATPVRRRPEVTRANRLQLALQVLCLKEMGFEIDGTEVYFTGHRRRVEVALTDADYLEARNAVEHTRHIVAQNRAPAPLENSRQCEWCSHASVCLPDERRYEAVRRRVVVQDPDSQIVHAATAGSRASLRAGRLEVTKSGEELLSVPIERVLGLVVHGNVDVSSALIRELCWRNRTLVWCSWSGRVVGWANGADSPNGLQRVQQHVASAEGRLDIAQQFVSAKIANQATLLRRNGDALEAVERMRELQRKVLRSGSLVEVMGAEGEAAGLYFGAFGTMLSGNTASFAAARWSGRHRRPAPDPVNAALDYTYALLLGDCVRACVSCGLDPHAGFLHSSSRNKPALALDLMEEFRAPVADSVVVRSLRNGELGEDDFVDMMGACRLSDRGRKQLIAGFERRVETSFRHPVFGYHVTWRRAIEVQARLVLGCIDGSQPSYRGVTVR
>LR134350.1|VEG27159.1|1058518_1059523_-|Uncharacterised-protein
MYIAGSINSALTTFAGLGLAHILEHSGVEGVRLGWTDAEEPRLAIEAEHLTTLDICEHVRRHAVECMNPESWVQQDLDAAPWKGKAAVLSPRIKQPGRDSEWLSLQDERNEVIDATIESAGCAGALDLIGALGEPSYWSHRNGVQCPDYGASRWEMKTRNRGEDFVRNRMRSLVSIVSQRDTEAVCDGLTGKVVRDEAYREKRSSDSRTATGLTRPQFTDSALAWCGLWGLASFPTVPRLEHCAVTAGAIPVGEYRVKSIVLPLMVGGYSLARWRAVLASGQLVNAVANEGRSARAWLVRHGARALALHRVHYIGSSNAPERYLGVGDVLVIAG
>LR134350.1|VEG27161.1|1059529_1062217_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)
MIAVEEFADFFEAVHGPGIRPFSWQTALLEALVTEGAWPEQIAAPTGAGKSSVVEIHVFATAMAALGLAPRLPRRLAVVVNRRAITDAHAQRAHDLLSLLEQTPDGETSVVGRVRDALVGLRPPEAQDRRPLVVTTMRGALVSDSQWLNAPEACAILCMTPAMWVSSLLFRSYGASRFARPRLAGLLSTDAVVVLDEAHLNRQVLVTARRVAALAANGAEALGVPGLAVVEMTATPSSRAASTAGVTRASIEDDERLARRMRCRKEITYLPYGEEAWPPGRGRQECAFYDRVVEQVSAEVERVRAQADPAPRTVGCVVNRVSTAVEVAKTLRSQGLRCTVWVGRMRPWDLERLRREVPGLFTTAGAEGVDVLVATQTVEVGVDIDLAGMVTELASGSAIAQRLGRVNRLGLRERSRVVVIGPSEDMKLTKDALPYRATDLDKGRRWVLARQVAGSASPLDIAENPPDPEAPTRVLWQRPEPWDVDLWSKTSMDLVAEPELDLWIRDDLEREVENVGVVVRDLLALVDGSSVLELVKKVPPEDCEAFPIPIGEARSLVKRILDDPDLARTASVLWRGGEPVAQWELAVASHMMAHETSQEAERLLRPGDTLIVDATIPFLTEGVARADGRDCAEPVPASVLAGVVDVVTDPERLGQLAQLSEEEREEHFPDCLWEWATPSDGSDEPQWLVVRRGLVVDDDSDERSTCSPVAGVLLADHNRDVADRAHRLAQLIGTGADVREILKEAGGWHDIGKRDDRFQRLLEADGEARAKSRLRPGRPVRRAWVEAGLPAGWRHEVASAAAYWEATVPGTGVPRDTRDLVARLIGTSHGRGRPLFDHDPTTAGPHHETALGELLGEGEWEALIARTDRVWGHWGCAYMEALLRAVDCSISAEGK
>LR134350.1|VEG27163.1|1062213_1063776_-|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MSPVGITARFILGVYHGHAADGSPETLPSPSRLFSALVSAALTGSRATENGGPDPAHLHALRWLEANPPTGMRLPEALPVSSSQGDRVAYRETGTIANNTKAPKKQATTVSDGAAVGSAITWTWDLMPGEVRHGLETLCEDVPCLGENDSPVVMEICEVEPTWRLDTGATAFTPGGLRVHVAAPGRIDALQRAHDLARPPKPPTAPQDRFRPSADEVRVFPVTTECLRTLRYEPISCDPGGSPWGEVLLVSIEEDTDEADIAPHRRLGWCVAFHRALVKRIGDGAPAVVTGRYPADARIPSNRLAIQYLSPSSLVLSRHRGLVGDRGAFAVMLPRDISDDDAEVVRRALAGMSFLRSRWGGAVVRPVDAVVEAGSFWTPSPPGTVRLWSPTPAAVPEVTKQRGDWTFEDAILLSLGFVYRDDLGVAERGGRAYRELVSRVRDHGASVMWYKRLTARPADYAHRMPEGMVAQPYSALLSAGDLIAPTALVVMGQSRHLGGGLLIPVDLPEELAAVAQGRRP
>LR134350.1|VEG27165.1|1063779_1064958_-|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system
MPALTFQQLLAACRAGGPSVLTSVTRLEPAAGPHASVAPAKFVERDKSVFAYERRFWEGRAVEAVLIDSKQSQNNRLEAAIATAIADGDPVLSTMPRIELRFDNGLSLTDVQLPHRAFDGQLRAGTINGSPTTSVPEYRELRDATASHARPLLERSPMTLLLGGWDASRKSHQGRYRSILVGEIIGILADQEEGPSRHSMRGGARIDPVGMRIDLSEEQRKKIAQAQKDELSASTYKNAGKKKASVLGLGGIPPALDQLGGVACQAIIRSHVLSFSALRGLRFDSESPEGDAACRAVLAALAINGLARSDAELLLRANCDLVEAEPAVVTLDKRYGDKERVDALSVDEASSLLAEAIDYAREHGGLVWDGSALVVEGNPDVLRAAGDEQQDE
>LR134350.1|VEG27167.1|1065349_1067623_-|diadenosine-tetraphosphatase
MTKGGARMRTLFILRGAPGSGKSTLIRHHRLSELALGLDDFRRLYSTPFTDLDGQPTLSMAYGAERKVVAAYKDAVETRLQMGATLLLDATNPNRRSWGAYAEFAERCGYTVHVINVQGDLDDDELLARNATRRGTIDYVTPQAVTSIAAKVRGAGALREPVVGFEDVRRLNTLVERDLTGVYDRLVLIGDVQSCAGALDKVRRHYGGWASDTLFVLTGDLFDRGPDAAGVLDVLGEPVPDNVVLVEGNHDEHLRHVVGGLPGARWSHTRTSLEQILASGRTKRDVTDLLGRMRPALALRFAGRSWLVTHAGLDAVTLERVMSVDEATGLRSYDLTTVPMRQLLLGSSSREQTYLGRSDYDRDVEALLSHAEVVQVHGHRNGTRDQGPGPERAAPNVVTLEHGVENGGHLSVLEVRADGVETILTFTDEPLAGGERAQGGWCTEPGSLMARMVAHPEVRIRDVEGLPGVVACNFTRRAFVKGVWDETSCKARGLFLQARSSRVVARGYDKFFNLGQAPGPADLGAVVRAGEGMPLTVRRKWNGFLAIVAVVDGSLRVLSKAGVTPYAQLAHEMLLAHLGPGEEELAGLLEEAGASLTFEVISRRDPHIVDEGEDKVVLLDAVRNQEQMELIEPLRLEVAERFGFISPQVEVISQAAGREDVEALAARARASEEARDEGFVISYGQGLMTKYKSRYYSEVKAFRALLERSLAGREVRPGSRGWSLYERYLDHGETSEFLVPDPMRPGAVDIPALVRSL
>LR134350.1|VEG27169.1|1067880_1068105_-|Uncharacterised-protein
MFVRREAIAVRCDHEGCDRMVAHRVVDTVHDPDGTAIERVLALSYTERDALRAAERDGFKIIASHVFCEKHDRV
>LR134350.1|VEG27171.1|1068408_1068891_+|Excalibur-calcium-binding-domain
MAALGACSAPTPVTVVETGTVAPVAFADTATTASSSPSPTGPSAAEASASAEASRLAAEAAASASAEASRLAAEEQAAAEAQRQAEEQTAAEAQRQAEEQAAAEAQRQAEEQAAQAPAAQQDTYYANCSEARAAGVYPLYVGEPGYRAELDRDDDGIACE
>LR134350.1|VEG27173.1|1068934_1069585_-|Uncharacterised-protein
MTEPSLPAQQSPSRYLEAVIGVACLSCTIASTRYAKDADKAPAMEQRVELLRMSAERVEAFEVLAAVGGEAGVEVYAAAQGFVGMLDDVDSRLRPLDWQERLVKTYLTFGMLVDFSMALADGLPQPVRTRVLDALSVDRFGGFAARELEEGIAADPQLAARLGLWGRRVVGEEIGTLQRVIAREPDLVAGGADAASLRTVLSQGATSRMRGLGLRM
>LR134350.1|VEG27175.1|1069985_1071662_+|DEAD-box-ATP-dependent-RNA-helicase-CshA
MSDDNQTETTDPEPSQTASGIIETAGAHAPVLDEATPDITDEGAQADLTRRTFADFGVEPEICEALAAKGITHPFPIQALTLPVALDGQDIIGQAKTGTGKTLGFGLPLLMDTLGPGEEGWDEDPAAGSPQALVVLPTRELAKQVAEELTMAAAKRTVRITQVYGGRAYEPQIEALAQGAEIVVGTPGRLIDLMDRGLLDLTHVTTVVLDEADEMLDLGFLPDVEKILARTRTDRQTMLFSATMPGAVVALARRYMTKPTHIRAQDPGDEGMTVKTVQQVVYRTHALNKVEVVSRILQASGRERTIIFARTKRTAARVAEDLASRGFATAALHGDLGQGAREQALRAFRKGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDDIPRWRIIAKALGLPVTEPVETYHTSEHLYSDLSIPEGVTGQLPRDQRTLEGLDAEEIEDLGETGRRPRDARAGRGGGRTGRGARSGRGGRSGRGQDEGRGSTSRSGRGRSGSPEDAGTQEQAGRPRRTRQRTRGGRPIATRNPDSAGD

Crispr_ID: LR134350_4

• CRISPR_ID: LR134350_4
• CRISPR_location: 1080399-1080498
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134350_4

Consensus_repeat	Method
GCCACACGCATGAGCCCCTGTCACACGCATGACTTCC	CRISPRCasFinder

spacers of LR134350_4

>4.1|1080436|26|LR134350|CRISPRCasFinder
AGTCGGAGGCACCGCCCTCAGTCGAG

CRISPR arrays and Neighbor proteins around LR134350_4

CRISPR arrays

The CRISPR arrays of LR134350_4

>merge|LR134350|4|1080399-1080498|CRISPRCasFinder
GCCACACGCATGAGCCCCTGTCACACGCATGACTTCCAGTCGGAGGCACCGCCCTCAGTCGAGGCCACACGCATGAGCCCCTGTCACACGCATGAGTTCC

>LR134350|4|5|1080399-1080498|CRISPRCasFinder
GCCACACGCATGAGCCCCTGTCACACGCATGACTTCC	AGTCGGAGGCACCGCCCTCAGTCGAG
GCCACACGCATGAGCCCCTGTCACACGCATGAGTTCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG27189.1|1077549_1079124_+|Xaa-Pro-aminopeptidase-1	unknown	unknown	gnl|CDD|238520
LR134350.1|VEG27179.1|1072675_1073203_-|Major-membrane-immunogen,-membrane-anchored-lipoprotein	unknown	unknown	gnl|CDD|226484
LR134350.1|VEG27183.1|1074857_1075487_-|membrane-protein,-MarC-family	unknown	unknown	gnl|CDD|225006
LR134350.1|VEG27204.1|1084398_1085544_+|antiporter-inner-membrane-protein	unknown	unknown	gnl|CDD|378455
LR134350.1|VEG27208.1|1085647_1086745_-|sec-independent-translocase	unknown	unknown	gnl|CDD|179287
LR134350.1|VEG27199.1|1083697_1084309_+|Predicted-membrane-protein	unknown	unknown	gnl|CDD|377629
LR134350.1|VEG27226.1|1088706_1089897_-|Succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl|CDD|237264
LR134350.1|VEG27173.1|1068934_1069585_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|205967
LR134350.1|VEG27195.1|1081543_1082281_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG27214.1|1086759_1087395_+|Putative-O-methyltransferase-MSMEG_5073	unknown	unknown	gnl|CDD|226607
LR134350.1|VEG27191.1|1079250_1080300_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG27175.1|1069985_1071662_+|DEAD-box-ATP-dependent-RNA-helicase-CshA	unknown	unknown	gnl|CDD|223587
LR134350.1|VEG27224.1|1087886_1088651_-|LOG-family-protein-yvdD	unknown	unknown	gnl|CDD|224527
LR134350.1|VEG27181.1|1073309_1074716_-|bifunctional-nitric-oxide-dioxygenase/dihydropteridine-reductase-2	unknown	unknown	gnl|CDD|99795
LR134350.1|VEG27177.1|1071704_1072679_-|thiamine-biosynthesis-lipoprotein-ApbE	unknown	unknown	gnl|CDD|376782
LR134350.1|VEG27187.1|1076458_1077553_+|Uncharacterized-oxidoreductase-ycjS	unknown	unknown	gnl|CDD|223745
LR134350.1|VEG27220.1|1087517_1087685_-|Protein-of-uncharacterised-function-(DUF3117)	unknown	unknown	gnl|CDD|371461
LR134350.1|VEG27197.1|1082412_1083705_+|Magnesium-transporter-mgtE	unknown	unknown	gnl|CDD|225148
LR134350.1|VEG27193.1|1080678_1081536_-|Hydroxypyruvate-isomerase	unknown	unknown	gnl|CDD|224007
LR134350.1|VEG27185.1|1075546_1076392_-|error-prone-DNA-polymerase	unknown	unknown	gnl|CDD|223686

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG27189.1|1077549_1079124_+|Xaa-Pro-aminopeptidase-1	gnl|CDD|238520	cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.	1.71418e-89
LR134350.1|VEG27179.1|1072675_1073203_-|Major-membrane-immunogen,-membrane-anchored-lipoprotein	gnl|CDD|226484	COG3976, COG3976, Uncharacterized protein conserved in bacteria [Function unknown].	5.21431e-08
LR134350.1|VEG27181.1|1073309_1074716_-|bifunctional-nitric-oxide-dioxygenase/dihydropteridine-reductase-2	gnl|CDD|99795	cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.	8.71202e-49
LR134350.1|VEG27208.1|1085647_1086745_-|sec-independent-translocase	gnl|CDD|179287	PRK01371, PRK01371, Sec-independent protein translocase protein TatB.	5.1653e-21
LR134350.1|VEG27199.1|1083697_1084309_+|Predicted-membrane-protein	gnl|CDD|377629	pfam06210, DUF1003, Protein of unknown function (DUF1003). This family consists of several hypothetical bacterial proteins of unknown function.	8.2684e-43
LR134350.1|VEG27224.1|1087886_1088651_-|LOG-family-protein-yvdD	gnl|CDD|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	3.37965e-56
LR134350.1|VEG27173.1|1068934_1069585_-|Uncharacterised-protein	gnl|CDD|205967	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like.	2.4309e-25
LR134350.1|VEG27204.1|1084398_1085544_+|antiporter-inner-membrane-protein	gnl|CDD|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	8.30131e-115
LR134350.1|VEG27214.1|1086759_1087395_+|Putative-O-methyltransferase-MSMEG_5073	gnl|CDD|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	1.12237e-38
LR134350.1|VEG27175.1|1069985_1071662_+|DEAD-box-ATP-dependent-RNA-helicase-CshA	gnl|CDD|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	4.26393e-152
LR134350.1|VEG27185.1|1075546_1076392_-|error-prone-DNA-polymerase	gnl|CDD|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	2.31901e-33
LR134350.1|VEG27183.1|1074857_1075487_-|membrane-protein,-MarC-family	gnl|CDD|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	7.53424e-42
LR134350.1|VEG27177.1|1071704_1072679_-|thiamine-biosynthesis-lipoprotein-ApbE	gnl|CDD|376782	pfam02424, ApbE, ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. It acts as an FAD:protein FMN-transferase, catalyzing the attachment of an FMN residue to a threonine residue of a protein via a phosphoester bond in such bacterial flavoproteins.	1.18605e-37
LR134350.1|VEG27226.1|1088706_1089897_-|Succinyl-diaminopimelate-desuccinylase	gnl|CDD|237264	PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase; Reviewed.	2.55191e-170
LR134350.1|VEG27187.1|1076458_1077553_+|Uncharacterized-oxidoreductase-ycjS	gnl|CDD|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.22913e-45
LR134350.1|VEG27220.1|1087517_1087685_-|Protein-of-uncharacterised-function-(DUF3117)	gnl|CDD|371461	pfam11314, DUF3117, Protein of unknown function (DUF3117). This family of proteins with unknown function appears to be restricted to Actinobacteria.	3.42178e-22
LR134350.1|VEG27193.1|1080678_1081536_-|Hydroxypyruvate-isomerase	gnl|CDD|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	2.72226e-21
LR134350.1|VEG27197.1|1082412_1083705_+|Magnesium-transporter-mgtE	gnl|CDD|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	6.55019e-32

Protein sequences

>LR134350.1|VEG27191.1|1079250_1080300_-|Uncharacterised-protein
MDAYPTPPSIPTVTLSAASSLRHLPSRPELLHLMRGVYYRPTESAEVWRQKHEISLARCRGAWETRRSAVALSHESAALVHGLWVRDAEPDVWTAMPRRSSPAVIALPPLDFRRGRTPRPAQAGGGSRVVSMRRRRLVIPEESLVVVQGIVVTDILRTAVDCAFDLPACRSVTIIDSAMRALVRPDRRDPVGAGRRWAQTRARFLDAVEAEGPRRGAVRAGAVARIASPFSESPGESVVRWQVDALGLPSAVLQQRVDLPEHRRSFFLDLAWPDLRVAAEYDGRDKYAATGTVWEEKVRQDLIQGASDWSFSRFTAEHLRDASRLREDVLAMFPAAVVAQARRRRGLWD
>LR134350.1|VEG27189.1|1077549_1079124_+|Xaa-Pro-aminopeptidase-1
MTESHDNASLTVEDEAQPVSERGSNRSHRPSNEAFRDFIASGWGPRPDRLPELSESAPWAAARRDALGALFPTERLVIPAGPLVTRNNDCDYRFRPHSAFAHLTGTGTDFEPDAVLVLDPLTVPGQETAAGEPTHEAVLYFRPRASRSSEEFYADARYGELWVGVRPSIEEVEALTGIRCAHIDTLSDRLAKDAGPGAVGLRVVAQADAAVTALVDQVRQGAGLAHGQEARQADDALAEATSELRLVKDAWEVDQLQRAVDATAAGFEELIRSIPRATGHWRGERVLEGAFGARAREEGNGLGYDTIAAAGDHANTLHWISNDGPVRPGQLVLVDAGVEVDSLYTADVTRTIPVDGRFTEPQRRVYQAVLDAADAAFARANEPGCLFRDVHAAAMEVIAARLEAWGLLPQGVSAADSLGPDGQYHRRWMVHGTSHHLGLDVHDCAQARREMSMDAPLRPGMVFTIEPGLYFRADDLLAPAELRGIGVRVEDDVVVRADGSVEYLTAAIPRTVEEVEAWVSGLIA
>LR134350.1|VEG27187.1|1076458_1077553_+|Uncharacterized-oxidoreductase-ycjS
MSDSTGTVSSGTDGPVRFAVVGTGFIAGWFMEAVAAVPQAEVVAVTSGRPERAAAFAAEHGIGAAWPSLEVLLRQCGPEGSSPADVVYVASTNVLHAEQSLAALEAGFHVLVEKPFAVTPEQADAMVEAAQRHDRVLMEAWLTAFEPGTRVLREALQRLAADGPGPHRAVLVKEQLSSRMPAYRAGELPAVLDPARAGGSVMDLGVYPVSLAIHLFGPPARVHATARLLSSGVDSHGAIILDYDVLPDGSSTDLEVVCLHSKTSRASTGSAIASDTMSLGFDDCQWPRRITLRSPEGQEDLSVTSTGPVLARELAEVCRLVSTGARHSPLHPPSASAACVRVLAEARRLTGIRLPGDPGAKMGA
>LR134350.1|VEG27185.1|1075546_1076392_-|error-prone-DNA-polymerase
MRIDPHTHSSCSDGTDSPAALMARAAEAGLDVVGLTDHDTTAGWAEAAGAVGSTGVALLRGTEVSCAVDGVTLHLLAYLFDVEAPGLTEAFEHARTSRSTRARQMVELLAADYPITWEDVEAQAAGAVTIGRPHIADALVAAGSFDSRGVAFAGPLATASPYYVRHWALDPVRACELVRAAGGVPVAAHPRAASRQRRLVPDAVFADMTDAGLAALEVDHRDHGPAEREQARELARYLGIGTSGSSDYHGAGKPNRLGENLMPPALLEQIVGEGSIPLVTA
>LR134350.1|VEG27183.1|1074857_1075487_-|membrane-protein,-MarC-family
MLDSVLDLTLLATSFTTILVIQDPLGAIPIFLSLTSRQTDAERRRSAWHATLVSFAVILLFAIFGRYILMFLGITVPALQISGGLLLLLVALELLTGKIEETPDSEGANTNAALVPLGTPLLAGPGAIVAAMVAVESARTPVIGWMSITAAIIVTHVVIWLTLRFSVGLHRLLGDSAIRVLTRIFGLLLAAIAVQMMADGVFAYIGTEL
>LR134350.1|VEG27181.1|1073309_1074716_-|bifunctional-nitric-oxide-dioxygenase/dihydropteridine-reductase-2
MTSSAAGLSAASAVPTASATAAVRARRPPARVREDRATALVASLAGLGLGVVLGAALLTLGPLEASWTWATTAVGRVSAVVGTYGMLWMIVLVARVPPVERALGHDRLVAVHKRVAPWTIWLILVHIVFSVLAWSGQEGVSWPVELWRMTLTEPWILAADVAVILLVAAGVTSYRRARRRLRREVWWTVHLYTYLAVALAFAHQITVDGPFLSGWARWVWIGLYLVVAELVVVHRVALPLIRSLRHDLRVERVVPEAEGVVSVWMRGRDLNALGVRPGQFANWRFMAPRLAYEAHPYSFSAPVYEDLMRITVKNLGDASALTARLVPGTRVLMEGPYGTMTAANLGSAGHTVLVAAGVGLAPARALAEDLSDAGVRVDLVVRVPSPSALPLDPELRVLERRPGVRVHRLVGHRDAHPMDAAQLLSLVPDLREADLYVCGPEAFNHLVLDSARAAGLSRDRLHHEELAM
>LR134350.1|VEG27179.1|1072675_1073203_-|Major-membrane-immunogen,-membrane-anchored-lipoprotein
MRPTTTGAITAGATILGVAAVIACSPTPQGTSVATTAGSGSVGSETTAADQAQSGSEQATTEASGSAQTSAQATTDSATGTSSGASGTFQGETYESPYGPMQVEITVADGTITEITWIQLPSDGHSERINESAAPTLVEEGLAAQSADVASVSGATYTSEAFTTSLQSAMTQAGL
>LR134350.1|VEG27177.1|1071704_1072679_-|thiamine-biosynthesis-lipoprotein-ApbE
MTPSHAPTVLGPAGGPALLDEAGVRLTGRGTLVRVVEAWGTVITLEAALRPGTPVDAELAARAGKAFDACQAEMARIDRLLSTYRSDSLITALRTGGCREEDLALEGDELAVRSVLEECRRLRALTGGSFDPWSVPGGVDPSAYVKGWGAGGFALILTQALGGDPAWSGPVTGVCVNAGGDVSVRGTRADGSPWTVGVRDPGDPSRILRVIEATEGHVATSGLYERGEHIVVAPLRQGRAESGRVPRSATVWGPDDGMADALATALFVDGRAGADWLRRVMDSDLGVGRRRSRWGAWVVEECGAWRLGETDSLVQAAGPRPHGA
>LR134350.1|VEG27175.1|1069985_1071662_+|DEAD-box-ATP-dependent-RNA-helicase-CshA
MSDDNQTETTDPEPSQTASGIIETAGAHAPVLDEATPDITDEGAQADLTRRTFADFGVEPEICEALAAKGITHPFPIQALTLPVALDGQDIIGQAKTGTGKTLGFGLPLLMDTLGPGEEGWDEDPAAGSPQALVVLPTRELAKQVAEELTMAAAKRTVRITQVYGGRAYEPQIEALAQGAEIVVGTPGRLIDLMDRGLLDLTHVTTVVLDEADEMLDLGFLPDVEKILARTRTDRQTMLFSATMPGAVVALARRYMTKPTHIRAQDPGDEGMTVKTVQQVVYRTHALNKVEVVSRILQASGRERTIIFARTKRTAARVAEDLASRGFATAALHGDLGQGAREQALRAFRKGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDDIPRWRIIAKALGLPVTEPVETYHTSEHLYSDLSIPEGVTGQLPRDQRTLEGLDAEEIEDLGETGRRPRDARAGRGGGRTGRGARSGRGGRSGRGQDEGRGSTSRSGRGRSGSPEDAGTQEQAGRPRRTRQRTRGGRPIATRNPDSAGD
>LR134350.1|VEG27173.1|1068934_1069585_-|Uncharacterised-protein
MTEPSLPAQQSPSRYLEAVIGVACLSCTIASTRYAKDADKAPAMEQRVELLRMSAERVEAFEVLAAVGGEAGVEVYAAAQGFVGMLDDVDSRLRPLDWQERLVKTYLTFGMLVDFSMALADGLPQPVRTRVLDALSVDRFGGFAARELEEGIAADPQLAARLGLWGRRVVGEEIGTLQRVIAREPDLVAGGADAASLRTVLSQGATSRMRGLGLRM
>LR134350.1|VEG27193.1|1080678_1081536_-|Hydroxypyruvate-isomerase
MTVPVGLSTSSVYPGGAEATFALAAELGYDGVEVMVWSEKATQDARVLEGLARRYDQPVLAIHAPTLLLTRSVFGVDPWDKVDRSIELARALGAPNVVLHPPFFWQTRYARGFVRGVERREAITGMHLCVENMFTWRPRNAHSTRDFQAYSPTWDPVGQGYRSVTLDISHAATSGSDALAMTRSLGPTLRHLHLTDGVPGFLDDHLLPGQGTQDCAGVLTYLAATGFEERGGQVVVEVNTRTMSPAQRREGLASALAFAREHLEGQGRTQDVHVPAPTRRRYNRA
>LR134350.1|VEG27195.1|1081543_1082281_-|Uncharacterised-protein
MPRGTEVASFATYPEAQAAVDALSDDGFPVQHLAIIGTDLRQVEHITGRRSWGRAIASGAGSGLWIGIFFAAMMMFLRPSNSTGVTAGAAVFMGVVWGIFFQVVSYGLTRGKRDFTSFSQVVASRYSILASAHAQEAAQALVDVPGNLTRGGEVARRAQERRAARAEARGDGPTAFGSRPDEKPRFGVRLAQGEDPSRYTADGPDAPGADEAGAQDPGREEAEDKAAGTPGATGGSQGPSTAAGE
>LR134350.1|VEG27197.1|1082412_1083705_+|Magnesium-transporter-mgtE
MENTRTRSTSRVFIARLVGTTVFDPLGDAVGKVHDVVALIALRGEPRAVGLVIEVAGRRRVFLPLSRVTAIEPGAVITTGLVNIRRFEQRHVETLVFGELFDRVVTMRDGTGQVTIRDVAIERDRGMDWKVTRLFVQRAASGPLGLRRGETFMVRPEEVSGLAGSADQQSATALLATLEDLKAADLADVLSDLPLARQLEVAAELSDERLADAVEELSDDDAVALLSGLDASRAADVLDAMQPDDAADLVAELPQIKATELLGLMQPEEAEDVRRLLTYDEYTAGGLMTTEPIILPPEATVAGFLAQARKAEMTPALAAVAFVCRPPLETPTGRYLGMVHFQRALRERPQKMVGSLLDKALDGVHAEDSIGTVTRLLATYNLTALPVVDDADRLLGAVSVDDVLDHLMPDDWREADEAVTDEMIERSANG
>LR134350.1|VEG27199.1|1083697_1084309_+|Predicted-membrane-protein
MAEQLDQPLSEGRSRRLRWARPRRTTRSDTSGRVAEAIARFSGTPTFLIWLTVFVALWMAWNSWGPGPLRFDKAELGFTALTLMLSLQASYSAPLILLAQNRQDDRDRVTAEQDRQRAERNLEDTEFLTREIASLRYAMNDVATRDFVRSELRGMLEEILAEERRTREQIHDERGEERRDGRRSEARAPGAEPPAGGSSGSQD
>LR134350.1|VEG27204.1|1084398_1085544_+|antiporter-inner-membrane-protein
MPTPSTDAVYEALGKVIDPELRRPITELGMVDSVEVAQDGTVTVGVLLTVAGCPLKDTITADTRAAVGDVEGVTGVEVHLGVMTDEQRAELRTRLRGGSAEPVIPFTQPGNLTRVYAVTSGKGGVGKSSVTASLAAAMAAQGLSVGVVDADIYGFSIPRMLGVNQVPTQLDGMLVPPVAHGVKVISIGMFVEERQPVVWRGPMLHRAVQQFLTDVFWGDLDVLLLDLPPGTGDVTISVAQLLPSAEVLVVTTPQTAAAEVAERTGLIATQTHQRVVGVIENMSWLSQPDGSRIEVFGSGGGQAVSESLSQALGYEVPLLAQLPLDVALREGSDSGVPAVIAQDGQPRDDAPAAAELVAVARRLGHRARGLAGRNLGVSPVG
>LR134350.1|VEG27208.1|1085647_1086745_-|sec-independent-translocase
MESSAGVWGTAEHLRQGAALAPIVPGPGRRGVYRRWRCVPGPGGTACRRVSGPPYTDRVFGISGAEFFVIVLVAVLVVGPQRLPEYTRKLTQAVRRLRVFLDDAKVQIAEEVGPELGDLDLSDLDPRNYDPRKIVRDALGEDLDAIRRDLANPFQSVAKTVKETSDDAVAAAAGARGSKSLSTMINDKAEETRRANASRQAAAAARQDETPESSEPSETTEAPGTSEEPGTDPVEGTTGTEAAEAAEATEAADATEAAEAAEATTDPGSTSGPDLVRAEAEAQAVTAEIPEVEQAGTVEVSDNAGPEEPEASDGPADPAAVPSSLSEDDARAPEPVRPISPRDIVRAARAAARTRAEAAEAVVEV
>LR134350.1|VEG27214.1|1086759_1087395_+|Putative-O-methyltransferase-MSMEG_5073
MSADKTLSWSYTEEFPREGEQAAQARLRGIELGISPVSPATGAALRMLAASVAAKSIAEIGTGTGVSGLWLLDGMGADGMLTTIDVEAELQREARRAFDAAGHPGSRTRVIRGRASDVMPRMAERSYDMVVLDVEPDEAAALADPAVRMLRVGGVLAVTHALWKDHVADPARRDALTVAARELGKSLRDREDLLTSLLPVEDGLLVSIRQA
>LR134350.1|VEG27220.1|1087517_1087685_-|Protein-of-uncharacterised-function-(DUF3117)
MAAMKPRTGDGPLEVVKEGRSIIMRVPLEGGGRLVVEITPDEIKELQEALASVKV
>LR134350.1|VEG27224.1|1087886_1088651_-|LOG-family-protein-yvdD
MTRETYRKGPVLLRGTQIPEQTTDARLLDRRGDTDWLHSDPWRVLRIQSEFVEGFGALAELGPAISVFGSARTPASDPAYALAEQVGAGLARSGYAVMTGGGPGMMEAANKGAHEAGGVSVGLGIELPHEQGMNEYVDLGVNFRYFFARKTMFLKYSDGFVVMPGGLGTLDELFEALTLVQTQKVSSFPIVLVGTRFWEGLVSWIRSTLVDSGVISNGDPGLVHLVDTAEEAVSYVVGAAQRMRADEARAAGRI
>LR134350.1|VEG27226.1|1088706_1089897_-|Succinyl-diaminopimelate-desuccinylase
MRTTTTPPQPGRAATSVVLPDLLGDLGALTLALVDTPSVSGSEAPLADAVEAALAGCSHLEVARHGNTVVARTHLGRAERVLVAGHLDTVPVSERTTNVPGRMEERDGRQVVWGRGSVDMKGGVAVGLHLAAALTAPSRDVTWVFYDNEEVNGDLNGLGLALDAHPEWFAADLAVLCEPTGAAIEGGCNGTLRLVLEVPGTAAHSARSWRGANAVHAAGELIARAAAAPVRTVEVDGLAYRESFNVVLIEGGVAMNTIPDSCRLHVNYRYAPDLGPREALSRALRIMAGIDPRDEEEDPAVEVSTGTVAVRVDDLCDAARPGLDSPLAAGLVAVVRARGGGVGPKLGWTDVARFSAAGVPAINLGPGDPMLCHTDDEHCPVSQIEEVASILREWLS

Crispr_ID: LR134350_8

• CRISPR_ID: LR134350_8
• CRISPR_location: 1762311-1762401
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134350_8

Consensus_repeat	Method
GACCGAGCCCCACCCCCGGAGGGCCGGGAC	CRISPRCasFinder

spacers of LR134350_8

>8.1|1762341|31|LR134350|CRISPRCasFinder
AGCGCCACCACCAGAGAAGCAGCCTCAGTCC

CRISPR arrays and Neighbor proteins around LR134350_8

CRISPR arrays

The CRISPR arrays of LR134350_8

>merge|LR134350|8|1762311-1762401|CRISPRCasFinder
GACCGAGCCCCACCCCCGGAGGGCCGGGACAGCGCCACCACCAGAGAAGCAGCCTCAGTCCGACCGAGGCCCACCCCCGGAGGGCCGGGAC

>LR134350|8|8|1762311-1762401|CRISPRCasFinder
GACCGAGCCCCACCCCCGGAGGGCCGGGAC	AGCGCCACCACCAGAGAAGCAGCCTCAGTCC
GACCGAGGCCCACCCCCGGAGGGCCGGGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG28400.1|1755650_1758656_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28425.1|1774798_1776169_+|Major-Facilitator-Superfamily	unknown	unknown	gnl|CDD|340883
LR134350.1|VEG28404.1|1760602_1761073_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|371210
LR134350.1|VEG28417.1|1768004_1768298_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|379422
LR134350.1|VEG28392.1|1753254_1753995_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28413.1|1764783_1766535_-|Molybdenum-transport-system-permease-protein-modB	unknown	unknown	gnl|CDD|224099
LR134350.1|VEG28415.1|1766531_1767581_-|Thiamine-binding-periplasmic-protein-precursor	unknown	unknown	gnl|CDD|270263
LR134350.1|VEG28394.1|1754229_1754757_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28419.1|1768981_1771120_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28407.1|1761074_1761509_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|371210
LR134350.1|VEG28396.1|1754795_1754942_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28423.1|1772205_1774689_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl|CDD|223325
LR134350.1|VEG28411.1|1763521_1764787_-|Fe(3+)-ions-import-ATP-binding-protein-FbpC-2	unknown	unknown	gnl|CDD|226361
LR134350.1|VEG28388.1|1750799_1751099_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28429.1|1777029_1782783_-|putative-ATP-dependent-helicase-Lhr	unknown	unknown	gnl|CDD|137505
LR134350.1|VEG28398.1|1754875_1755523_-|Protein-of-uncharacterised-function-(DUF541)	unknown	unknown	gnl|CDD|377344
LR134350.1|VEG28402.1|1758717_1760586_-|High-temperature-protein-G	unknown	unknown	gnl|CDD|237603
LR134350.1|VEG28427.1|1776202_1777033_-|uracil-DNA-glycosylase,-family-4	unknown	unknown	gnl|CDD|381681
LR134350.1|VEG28421.1|1771396_1771960_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|379427
LR134350.1|VEG28390.1|1751131_1753255_+|Uncharacterised-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG28417.1|1768004_1768298_+|Uncharacterised-protein	gnl|CDD|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	7.01956e-12
LR134350.1|VEG28404.1|1760602_1761073_-|Uncharacterised-protein	gnl|CDD|371210	pfam10722, YbjN, Putative bacterial sensory transduction regulator. YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabilizer for some other unstable proteins. This family was expanded to subsume other related families: DUF1790, DUF1821 and DUF2596.	6.99008e-09
LR134350.1|VEG28413.1|1764783_1766535_-|Molybdenum-transport-system-permease-protein-modB	gnl|CDD|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	5.70854e-76
LR134350.1|VEG28407.1|1761074_1761509_-|Uncharacterised-protein	gnl|CDD|371210	pfam10722, YbjN, Putative bacterial sensory transduction regulator. YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabilizer for some other unstable proteins. This family was expanded to subsume other related families: DUF1790, DUF1821 and DUF2596.	1.84847e-09
LR134350.1|VEG28421.1|1771396_1771960_+|Uncharacterised-protein	gnl|CDD|379427	pfam14025, DUF4241, Protein of unknown function (DUF4241). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 205 and 315 amino acids in length. There is a conserved GDG sequence motif at the C-terminus.	5.52175e-29
LR134350.1|VEG28425.1|1774798_1776169_+|Major-Facilitator-Superfamily	gnl|CDD|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.98758e-08
LR134350.1|VEG28411.1|1763521_1764787_-|Fe(3+)-ions-import-ATP-binding-protein-FbpC-2	gnl|CDD|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	5.62686e-101
LR134350.1|VEG28429.1|1777029_1782783_-|putative-ATP-dependent-helicase-Lhr	gnl|CDD|137505	PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional.	0
LR134350.1|VEG28398.1|1754875_1755523_-|Protein-of-uncharacterised-function-(DUF541)	gnl|CDD|377344	pfam04402, SIMPL, Protein of unknown function (DUF541). Members of this family have so far been found in bacteria and mouse SwissProt or TrEMBL entries. However possible family members have also been identified in translated rat (Genbank:AW144450) and human (Genbank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerization. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.	3.20012e-17
LR134350.1|VEG28402.1|1758717_1760586_-|High-temperature-protein-G	gnl|CDD|237603	PRK14083, PRK14083, HSP90 family protein; Provisional.	0
LR134350.1|VEG28427.1|1776202_1777033_-|uracil-DNA-glycosylase,-family-4	gnl|CDD|381681	cd10031, UDG-F5_TTUDGB_like, Uracil DNA glycosylase family 5, includes Thermotoga maritima TTUDGB and similar proteins. Uracil DNA glycosylase family 5 includes Thermus thermophilus HB8 TTUDGB (also called UDGb) which is not only a UDG acting on double-stranded uracil-containing DNA, but also a hypoxanthine DNA glycosylase acting on double-stranded hypoxanthine-containing DNA (except for the C/I base pair), as well as a xanthine DNA glycosylase acting on both, double-stranded and single-stranded xanthine-containing DNA. TTUDGB also excises thymine from G:T mismatched DNA, and removes analogs of uracil from DNA, including 5-hydroxymethyluracil (hmU) and 5-fluorouracil (fU). This subfamily also contains Bradyrhizobium diazoefficiens family 5 homolog Blr5068 (UdgB) which has been found to efficiently excise uracil from ssDNA and dsDNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Similar to family 4 UDGs, members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	2.74002e-116
LR134350.1|VEG28423.1|1772205_1774689_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl|CDD|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	5.88247e-68
LR134350.1|VEG28415.1|1766531_1767581_-|Thiamine-binding-periplasmic-protein-precursor	gnl|CDD|270263	cd13545, PBP2_TbpA, Substrate binding domain of thiamin transporter, a member of the type 2 periplasmic binding fold superfamily. Thiamin-binding protein TbpA is the periplasmic component of ABC-type transporter in E. coli, while the transmembrane permease and ATPase are ThiP and ThiQ, respectively. Thiamin (vitamin B1) is an essential confactor in all living systems that most prokaryotes, plants, and fungi can synthesized thiamin. However, in vertebrates, thiamine cannot be synthesized and must therefore be obtained through dietary absorption. In addition to thiamin biosynthesis, most organisms can import thiamin using specific transporters. After binding thiamine with high affinity, TbpA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The thiamine-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.65807e-101

Protein sequences

>LR134350.1|VEG28407.1|1761074_1761509_-|Uncharacterised-protein
MSAQPKVTIARVEAWLKSEDLNYELDEDGDVLTGFENCMVSIIDRGGDFLSVATTWRGELGEVEEAALRVEVDEHNHSKYGPRAAVRATDDGAVLSADMSVVTTEGMSDAQLADFLGTAFATVLSFYAEVEENYPALVTWTEED
>LR134350.1|VEG28404.1|1760602_1761073_-|Uncharacterised-protein
MAWWNKPAAGQTPKVTVDRIAAWFDKNDLNYDRHESGEAIISGFGEYGYVVAIPETTMLQVHARFYTNLAVDDASRAQLRELLGEFNTSQVMPTLSTFVDEDGAQVSADVVASITEGLNDEQLDDLLDTAAHVVLRTFEEIGEALGIEPASDEDDE
>LR134350.1|VEG28402.1|1758717_1760586_-|High-temperature-protein-G
MSTDAPSPGQSAFQVDLRGMVDLLSRHLYSGPRVYVRELLQNAVDAVAARQAIEPGCARRVVLTVGEGTLSCRDTGIGLTLAEASSLLSTIGASSKRDELGLARGDYLGQFGIGLLSCFMVSPEIVVRSLSARPGASSTTASWVGRTDGTYSVEPVSEPGRALSEPGTVIELRSLPGEAWLQADTVRSLVDEFGSLLPIDVEVRAADGVTYHGGASGPWEMSRHEARDWCVEELGTQPFDLIDLAVPVSGLQGVAVVVAQAHPTATAHHTAYVKRMLVSRSAEDLAPPWAYFVRVVANSDHLRLTASREQLMDDDLLESTREAVGDAVRSWLERTARLAPARFAEFVAAHAVGLRSVALADEQMLGLVVRHLPVETTEGGRTLTELAEMAAQGRTVRYTRTVDQYRALADVASSQGLVLVNAGYSFEEEVLGAFLARPDLAGADPGISLVDPGELLEAFTPCSPAEEAEAVDLLMVAAAAIDSEDCEVVLRRFEPATLPALYLPDPDLAGRVAARSSRKAASGVWAEVLGVTDPFATSSVPRLVLNRTSSLVARLVVTAAKTGSAGAAPDDTVVQVLRGLYIQCLLAGRQPLGPKERAWASQALTSLLDASLPPLSGSRPGT
>LR134350.1|VEG28400.1|1755650_1758656_-|Uncharacterised-protein
MTTHDDVLERLALARAHAWGPARSNLVAEAVTWADALEDEQLAVDTRLALAEAYNQGNEEWKALAPFVWLLNRHAERPDLFDASRIHDMNWNYKWAIHVAADNPGVSVAQLRELENGLEEFYRSQGASMHVVHGERHHAAVMLGLDEEAETELAAWRATPRDSSSDCEGCDPMRQVSWATNHGDWELAVATAVPVLDEEVGCAIQPATMQAAALMALLHSGRPKAAWDAHVRSYRSLKGRPQFLGDMGRHMEYLALTGRVTRGLRILRETLPMSDQCESAVVLSGLLAGATLVLREAERAGMGQEALGVSVPAESVWCPGPGLEPGTTVSQAYAEVGAWVRKVASLYDARNGNTTVSQRLEARLAAAPVVDAGEVAARGALAAAGAELLEAREELPEGIRIGGGEEETEAEAFLEGITAMPSILGGSEPGSPEPAPEAGTESAGQEPEADPYPVVDLRVPEPPRDVEDALRRIEATLARPGGSLESLYVGCQTISRGLLPDPEKVDPEHARMAWTILSATAEIAWDYETAVEHRLRGRALLPEGDELGTILCDLRVIKLEHGADELAERVTVESRQERLERAGALAERLAGIVEELLAAPEGRQKDLVRAFDASMILVDLLPELNEYDGAQESLDQARRISGLVAHLVDPVDGRLDDQLDLASAELDLARGKVYEACILAEEVLRRHNPCPVVTALGARRILALGSTQVEEHGETVVQMRECLNIYLATGMTPLTGGVFGGLASALGMSGRALEAAEVLETALGSDVPETVADRLRSVLVAVLDNLDEEEGVRSNALAVAERALSRGEVERASEYLVRAANAAYNLDENTQAAALFQRVAELEDVSENAGRVRRSRLLRRAARAVVDDRTLAMSRARLDEAREIMARALELIEDVPTSRRYSAEYEIGDWHDDMAWILWRTDENAEAVDHCEAAFTGYMSTKDRDSAARPLTLLVRLHAEREEKDAARATIARVRELLAHRRWENHPALATVANIEESLED
>LR134350.1|VEG28398.1|1754875_1755523_-|Protein-of-uncharacterised-function-(DUF541)
MTTIKVQGIAEHEQPPERATANLRVGLRGPKQSSVHDEVAAVLRELRASIESLHDPGRGPVTWFSVSGVSGWSYKEDKRTVYTEQIRIQVKFCDFTVLGAWLNEVLGWRGVSMFRIDWSVTEVRRKELEKGLRLQAVRVAREKAEQYASAVGLSITDVSSIRDFGPGVDTAAFIAGASVRGRGGRAGSAPADDSYSFAPEDVTLRAAVVAKFVAE
>LR134350.1|VEG28396.1|1754795_1754942_+|Uncharacterised-protein
MPRRPRRLGASVPNCAEVPESVRARSSYSATNFATTAARRVTSSGAKE
>LR134350.1|VEG28394.1|1754229_1754757_+|Uncharacterised-protein
MPDRTSVCDLLDSTDLEQRTGLQIAWYSLSRESGTDFPRQSCQIDFAQPDDDIADTIMISYAVASHPERSLVEDRRSYAASSKVDSIAMDGLPGEAVSYVEAENEKIVWRSPVGGEVTIGFISNDSTLAAKDPEGAHELLLHILEEVVPIIDEVAAGPQHPVIYFPASPPARRTS
>LR134350.1|VEG28392.1|1753254_1753995_+|Uncharacterised-protein
MVRDLQNWLRARTRRQHIVSSLVVALILCSAVGLTKAHDVYLEHKKAEVASSASAAVASAYASAQASATQAVPDGTKICDLLDSTDLEQRTGRQILSYQFSRYHDTSIPTQDCSIDFDQPNPHIADQLVLYYTEMPSPEMSLTDDRVRFADNSVVHSVSMNDLPGEAVSYMNRGNEMITWRSPKGANLHIWFVSANSYLGAGDPLGTHELLLHILYEVVPIIDEVAAGPPQPLTYYPSTPTTTPTP
>LR134350.1|VEG28390.1|1751131_1753255_+|Uncharacterised-protein
MVTLYMNPDRLQEAIDCLDNLAAEGDSIRQSIDTEFNHEGDPIDPTVDLNNISAACTAVRNRATEIRTCRQTIIDLNENGVASMNADGTITCTVPDTVDINNSSDLTSWAQAETDAHDLDVLLDGGEPATGRTYDEVVASMSTNNENGTYAAAFIDAAGPENLTSLPGLAREHNERTLQYGVTYDPNNSAETLAGLLGEILAQASSTWDATEAQAASDAIVSSVDDPSEHTRIPALNAMMGGHDANGDHVNDLKFGNDFLLAMATGLEEVDLEAIEQYRDSRRSYDSSSGYDVQSSSNTTGISDPCYDPLAGVLDAMGNNPDAAAAFLAPPASGDATDPQADMTRMKTLAARDWDPTGFAGLTAAVAAASSIHTTTTDSSAATRSWQLAGTAVHQVALHGEESLYNDDAKARVGILLANCSGAVTSLWKSGTATDMVTDRKLPDATEDDVDALAYIVADSPEAVATISAGLAAHASELSDHLVEHWQQRGDDGAQQTYCIGLAHGNGIEAAARLAGIADRKAADLTATNKQASEDATQAANTAAAVFAAVATAPMGPWAAAATTVGATVFTHELISNVVGADITDAESPLEDNPKQAYVAAAVQDASDAGLITQEALQSESAKYSWIQQDPNGIYYVDLSNLPPSRHNEVVTWLDRVASLTEDETLMELNTSANGRYGDGHSTGSSVHPSNNPSSSSQLTPSAAEEE
>LR134350.1|VEG28388.1|1750799_1751099_+|Uncharacterised-protein
MSLMLEPTNPRWISLNDLLEFVAGKKDGFGVSTLFGYTSSGKASYVDINSTDVWTGNLADQEAESAGAEVDAIFTALEAMEATIQSARDSTDMYEEDEH
>LR134350.1|VEG28411.1|1763521_1764787_-|Fe(3+)-ions-import-ATP-binding-protein-FbpC-2
MSTGLSLRGLTVVYPGTTAVQDVDLDLADGEVLALLGASGSGKSSLLRAVAGLEDVASGQVRWDGRDVVTVPVHRRGFGLMFQDGQLFPFRDVGGNVAYGLAGTPRSSREAVVRRMLHLVGLPGFERRAVSTLSGGQAQRVALARALAPRPRLLLLDEPLSALDRALREQLATDVRTILREQGTTALYVTHDQDEAMTVADRVGIMEGGRLVRVDTPEGLWSDPGSAFVARFLGFGPLLAREEVVALGWGQAWARAAGRAAAGPGGRPGGPAAAGLGGRPGGPAAAGTGGSPEGSALLALAPGALSALAPGSRPDLPRARVTGVRLRRGDRLVEVDLPGPGATAVSSAAAATGSGGPAGSAEPEAATAPATPTAAATGVAGAPASRTATAVLAASAGAVEPGDQVALLLDADRTALVRSDP
>LR134350.1|VEG28413.1|1764783_1766535_-|Molybdenum-transport-system-permease-protein-modB
MSAPGAPGPSRARGRPAGPRPSTGQRVGWVLAAGVPLVFLAVLFAWPVTTLVLRGLAPDGAIDLSGAAEVMARPRTWRAVRQTLLQATAGTAVCLLLGVPGAAVLYRRRFPGRNLLRAVVIVPFVLPSVVVGLAFHALVTTGGPLGGSVLGLRLDGSTALVVAALVFFNYGLVVRTVGTMWSRLDPRAVEAARALGASPWRAFRTVTLPSLLPTIASAGALTFLFCATAYGVVLVLGGTGAGTIETEIYTLTAQYLDLRAAAVLSLVQLLVVAAGLWATERARRAGQAHLNLRVDVPATPLRRGDLPALALTLATVAVLLIGPVAVLVARSLRRAGTWTIANYTDLSTTGGRNALVVTVWEAAANSLRVALAAAVISLVVGGAVSLVVSRSPRSRTAARGLALVDSVFMLPLGVSAVTVGFGFLITLTRPPLALTRSWWILPLAQAVVAVPLVVRTLLPALRAIDPRQREVAAALGAGPGRVLATVDGPHLLRAGGLAAGLALATSLGEFGATSFLARPQTPTLPVVVYRLIGSPGAQNQGMGLAAGVVLALGAAGIMLACEWLQTAWNRPAGPLGPRDEEDR
>LR134350.1|VEG28415.1|1766531_1767581_-|Thiamine-binding-periplasmic-protein-precursor
MTTISRRALLAGAGTTALGLGLAACGSSGSSQDTVTVVTHDSFTLPDELVAAFEKDTGQTLSIVASGDGGELVNKLVLTKDAPLGDAVFGVDNSFASRVLTEGVIDLSTEITLPEGADQYVVDGSPALAPIDFGEVCVNVDTAWFSVSGLTPPASFEDLLKPEYKNFFVAINPTTSSTGMAFLLATVGHFGVAGFADYWKGLVANGTRIDEGWSDAYYTDFTAGGEGGAYPIVVSYSSSPAATLTEDGTASTTAALHATATRQVEYAGVLAGAANPEGAKTFVEWMLSTPVQAAIPESMYMYPVNPEAQVPEELQRFGAPSESPIVVDAAAIAANRESWLATWTEAVGA
>LR134350.1|VEG28417.1|1768004_1768298_+|Uncharacterised-protein
MPTKDLAWTATSALTMVAAGFVANKIVSTGWRAVTGRAAPKDQDELLTAGLAEVVVFAVVSGALVSLTRELALRQAAVWYDRSAVSARFGPRTTIEA
>LR134350.1|VEG28419.1|1768981_1771120_+|Uncharacterised-protein
MEYPYAFNQFRLALHTAATSPDPDERTRGARRAMRWARALAAIARGKVRVGSRSPVKGLPVWVTPEVLRGGFATGRALAEVPLSEEETRRLERLGLPATREALLVSWLTDEGMAELGAMLDERAYIVEIPEDGAVLLAAALLRAGHEHAALTALSEISPLAGRLRLTPTPAPPASHAPETCFRRSAAQVSDSLRRMRPSTAVEAQREALGLWLPLTDQVVSFWSTRHSTAWSAEDVAEARRLLAAYEDACLQGTLCRKYRHPKENLPILVSALRAGVTGELDEAWRRRVAHVLGCVQAKRGLPGDEAAQALRREQRRVAGRASHSDVARVAARRLDDLPPREGIDDVENATRPISPQEATEGAAAGTPLPAAVRRRIEMGRAGSLPQLVEQGAVPSAEVLAELVPQVTAARLAAGYEDPALGAAVAATYAAFRRRRTLLLLDYASQFRFEELPWIQAADAARRSSPSRDAAEVGRQVAATALEAFPGTILPNALISELRTLWDAGGIRTTLTEELAADIFMGGFSTRFVASAQEAARLLRGTLYERYYGLDYDAVLTLPVTHAGPDSAFTTMCSAGGSGLSGTAVTGAIIERQQILTTHNLAAMVIAGVEPASGWAELAVRASERTATLLGRARAHGESRSYARLRSMKNAAYAWRQAVFFLSIADGASQDLRPRTTFPARVEESMSRLVADLDRSRSTPVRPFLGWGTWDV
>LR134350.1|VEG28421.1|1771396_1771960_+|Uncharacterised-protein
MPSGRVEACDPFVTLGEGPVYAVEPGDYPVRVTVADVSPAQDGSHLREAYLSIVLADGEAASVEEAETVNGDDGGVGVDAGTVGFADHEAVSTAMPSDGVDWYEELFDSGEPDSWFELMDSTEHFRAGAANIVMPLAENGENVVLSHSGWGDGFYPVVLTRDADGSPLGLHIDLQVVGRSADHEDED
>LR134350.1|VEG28423.1|1772205_1774689_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MSPLAIVHTVCVVIVVLATVVGVAVFARACCTIVNRMRVGRPAPERVRPVARRAWLSLWAALNHSAFRNRPWIRAAHWLVMVSFPLLFLTLVTGYGQVLGDSRFELPWLGHQAWWAWVVEVIAWASLVGIIGLVAVRRRLTRGGAAAPPFPDAESGPSRPRTSRFSGSSAWQARFVEGVVTGVVACVLVLRMLEHAQLAVSDDPAARALASWTHFPLTAWTGPLLEPLGAQPLAIAITVVATIKVLISMSWFVVVGLQPSMGVAWHRFLAFVTMYARRETDGSKALGPLQPLVFDGPQGPTELTAQTLDDLEAAMESAEEGGTELRLGAGRIEDFTWKGLLDFSTCTECGRCQDLCPAWNTGKPLSPKLLVMALRDHHAAAAPYLRAARALGTDPEEITDEELAARRAAGPVGRLVGMRDGLALGATAGQVPGSAHSGDVLGALLAAQASPSDTGVATRPAPLAGEVIPPEVLWSCTTCGACVDQCPVDIEHVDRVVDIRREQVLMASAFPKELGQMFRKMESKGNPWGLPARKRMEWTKGLGFEVPVVGVDVESAEEVDYLLWVGCAGAYEDRAKKTTRAVAELLDIARVSFAVLGDAETCTGDPARRAGNEILFQTLAAQNVETLNEVGARRIVVTCAHCFNTLAREYPQVGGSYEVLHHTQLLNALVREGRLRPVAPGAGAGAAGGRPGAPEPEGAGTAGATAPAAPVVTYHDACYLGRHNQVYTAPRELLEATGATALEMPRSRERALCCGGGGARAFMEESIGTRIAAERAREAVGTGAQIVATACPFCTTMLSDGVAGQDGDVRVTDVATLMLEAVKRGQG
>LR134350.1|VEG28425.1|1774798_1776169_+|Major-Facilitator-Superfamily
MPESGLRVYASLLRMPHVARSAVFGVVGQFPLPLLGMGLLIGIRDGYGSYTLAGTVSAVMALTSAVTGPIVGRLIDAHGQRRVGLPVAGLWIASIGFMSVALAWRLPSGVVIAAGVLLGTSVPFSSMLRARWRHVLADQPGQLNSALSLTSILEEMMWVIGNPLATVLATSVAMLAPLAAAVTAIVLAVIGFLLDSSIEPPATGRAGRRPGWRLIGPHGPRSAARGERGTDAVDAGPAGEAVTGQTSDATDQTRAPQARERMLTLGYVSLLTITVAYGAFIAATNVSIVALATELGRPGTAGSVIACFSGASMLGALGYGARAWRSPLWVRFYAGMVVVAAGSSMLLWVDSLGAAAIVLAVAGLAQAPTVVNVNQLLIRMTPASRFTEAMALLGAMFVIGMAVSNLVTGRMVDLMGSHGGFLSLAGFASAALLIGVCSARPIRATTRPRVEDLLTS
>LR134350.1|VEG28427.1|1776202_1777033_-|uracil-DNA-glycosylase,-family-4
MTEPHPLTGQRVASPVPPGTGWPGDPADATTHTARSAAGVVRLARAARDLDHLDAAVSVCCACPRLVAWREEVATTGRRASFSREPYWGRPVPSFGPADARILVVGLAPAAHGANRTGRVFTGDRSGDWLFAAFHRAGLASLPTSVGAGDGQELTGLRVAAAVRCAPPANQPTTQEKAACAPWLVREIALMPELRVLLALGGIAWDTTLGVARTAGWGVPRPKPRFGHGASAVLTRPDGERVTLLGSYHPSQQNTFTGRLTEDMLDEVLRAALAYP
>LR134350.1|VEG28429.1|1777029_1782783_-|putative-ATP-dependent-helicase-Lhr
MTADRAAVPQAWGAFAPATRAWFANAFPGGPTPVQDRAWAAIGRGENTLVIAPTGSGKTLAAFLSAIDRIIGGTVPKATRASGPEAFGVAGGEQGGGALVDGAGQVDDGGTVLARAWGDGSGGTGAHQTARRTGTLPGGARSDRRGVRVLYISPLKALGTDVERNLRRPLDGITEAAAHLGAPVRPVSVGVRSGDTPAAERRRLRTRPPDILITTPESLYLMLTSAVRETLRTVETVIVDEIHSFAGEKRGSHLALSLERLDDLLERPAQRIGLSATVSPREEIARFLGGPHPVSVIADDGRTAPEITVTVPVDDMAQVPATADRRTRMERATAGSLRQGRPPDPTRVWRSDRALRRALAGAEGGPRADGASGARPASALAGGSSHEDSSGVVDVPRSEDSSSSGPPPAPEAPQPSGSLGLTTAGVGRTGTAPQTSGSIWPHIEEAVLDQVLAHRSTLVFVNSRGVCERLTARLNEAYAMRVLSGAGSGAGPGAGSGAALGAGPDAGPDAGSGAGSGAALGAGPDAGPDAGSDAGSGAGSGAGPDAGPGAGSGAGPGSAPSSGLRTHCEPVMHRESWEMGDANHAQAAPVIAKAHHGSVSKEQRLTVERELKSGELRCVVATASLELGIDMGSIDLVLQVAPPPSVASGVQRVGRADHRVGGRPRGVIYPVQRTQLIDAAVVAEGMRTGAIERTALVPNALDVLAQQTVAAASVEDLEVDAWYRTVRRAAPYRDLPRSSYDSVLELLTGGYSTADLADLAPRLIWDRQAGTLVARPGAQRLAVTASGTIPDRGTFPVLLPEGADDGGRRRVGELDEEMVNETSVGDVITLGTTSWRVREITGDRVVVDPAPGRSSRLPFWRGDGPGRPAATGAARGAFLREAAAGLDDAAARLAAGAPEAAPAPAPAAAPAPGAVLAAGEVLVPTPERAPEVRPALLDRLAAAGLDARARANLVDLLREQKAATGVVPSDTTLVLERNEDVSGSLRLILHSPFGRRVHEPWAMAIRERVRTTMGFEPQLVVAYDGIVLQVPVPVGPPPGPELVAFDAAELTSLVRSRIDETALFSSRFRECAARALLMPRPHPGRRVPLWLQRLKSGQLLQAARQFHDFPILIEAARECLQDVYDLDALASLMGRIAAGTVRVVDVTTRTPSPLAAPLLFGYTAALLYEEDLPHAERRAHLLSLDPDAVAALLGDDVAAELLDEDTLNEVEADLQRLSPPRRVRADVEGVADLLRELGPLTVAELTVRCRGGRDDEAAVRAALGELEQSRRALQVPVGTRRCWSRLEDAPVLRAALGATVPDWVEEQARGHPRASHRSPLGELVLRYARTHARVTGRDVADAFGLGEAVAEDALAHLADAGELVRLGGGDADARWMAPEVLRRVRSRSLARAREAVEPVSPYALQRLVLSRAGLAEPRTGVDALAEAIAALEGVWLPAAQWEEQVLPARVADYRPTMLDDLIASGDVVWQSRTGAVTAGDPGEPGGGAPLAAPGTVPAPGPDSTSLVPEEIAFFPSDSPLAPVVGESLEAEALSVDRTWRLTLSGSATARSFEPVRRALAPRPAAAPRRRVRSRRGRGRYAGLLGTSAPADPLSWSTRTVPVTPDNTGGAAVPGATGRGPAGSAAGSSAGSPAGSAVGGPAGSVGGGPATAAIVTGAVWYHLHAPQVGDAEAALASVESLIDRYGIITPDLALAAGTPGGFGHLLPLLRRMEDTGALMRGRFVEGFGPAQFAERETVDALRALDADGGAGRGADPRDGAGPEADGRGGPGCRDCVVVDLKDPACLVGRGVPWPEPALPPGLQGRQAPSTPTRRRGTSVVLLDGRPVLYAAETMRALVSYTAEPAELEAALRALVGAQRRAMTRQAAGAVRRRLVESLNGIPAVDRAVSELLAGAGLVRDPRGMRLTVDPSWRDTMGG

Crispr_ID: LR134350_9

• CRISPR_ID: LR134350_9
• CRISPR_location: 1823407-1823493
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134350_9

Consensus_repeat	Method
CCCCGGGCGGCCCGGACGCCGCAGC	CRISPRCasFinder

spacers of LR134350_9

>9.1|1823432|37|LR134350|CRISPRCasFinder
CTTCCGCCTCCTCGGCACCGCTGAGGGCTCGGACCCG

CRISPR arrays and Neighbor proteins around LR134350_9

CRISPR arrays

The CRISPR arrays of LR134350_9

>merge|LR134350|9|1823407-1823493|CRISPRCasFinder
CCCCGGGCGGCCCGGACGCCGCAGCCTTCCGCCTCCTCGGCACCGCTGAGGGCTCGGACCCGCCCCGGGCGGCCCGGGCGCCGCAGC

>LR134350|9|9|1823407-1823493|CRISPRCasFinder
CCCCGGGCGGCCCGGACGCCGCAGC	CTTCCGCCTCCTCGGCACCGCTGAGGGCTCGGACCCG
CCCCGGGCGGCCCGGGCGCCGCAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG28459.1|1804246_1805155_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|380141
LR134350.1|VEG28496.1|1836435_1837371_-|Prephenate-dehydratase	unknown	unknown	gnl|CDD|237013
LR134350.1|VEG28492.1|1834285_1835224_+|Morphology-and-auto-aggregation-control-protein	unknown	unknown	gnl|CDD|176103
LR134350.1|VEG28478.1|1823701_1825105_+|Maltose-binding-periplasmic-proteins/domains	unknown	unknown	gnl|CDD|270453
LR134350.1|VEG28465.1|1810195_1811440_+|Cystathionine-gamma-synthase/O-acetylhomoserine-(thiol)-lyase	unknown	unknown	gnl|CDD|223699
LR134350.1|VEG28471.1|1815549_1816371_-|Shikimate-5-dehydrogenase-like-protein-HI_0607	unknown	unknown	gnl|CDD|183587
LR134350.1|VEG28461.1|1805562_1807662_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|176048
LR134350.1|VEG28474.1|1820671_1822021_-|Uncharacterized-sugar-isomerase-yihS	unknown	unknown	gnl|CDD|369267
LR134350.1|VEG28469.1|1813398_1815351_+|Tripeptidyl-aminopeptidase-precursor	unknown	unknown	gnl|CDD|312032
LR134350.1|VEG28490.1|1832811_1834134_-|Serine--tRNA-ligase	unknown	unknown	gnl|CDD|235461
LR134350.1|VEG28494.1|1835390_1836383_+|Lipid-kinase-YegS	unknown	unknown	gnl|CDD|224513
LR134350.1|VEG28472.1|1816648_1820164_-|Minor-extracellular-protease-vpr-precursor	unknown	unknown	gnl|CDD|173814
LR134350.1|VEG28480.1|1825104_1826031_+|Inner-membrane-ABC-transporter-permease-protein-ycjO	unknown	unknown	gnl|CDD|224096
LR134350.1|VEG28476.1|1822180_1823404_+|Making-large-colonies-protein	unknown	unknown	gnl|CDD|224851
LR134350.1|VEG28486.1|1830093_1831680_-|Maltose-binding-periplasmic-proteins/domains	unknown	unknown	gnl|CDD|224567
LR134350.1|VEG28488.1|1831679_1832810_-|Uncharacterized-phosphatase-YwpJ	unknown	unknown	gnl|CDD|223635
LR134350.1|VEG28463.1|1808747_1810079_+|Cystathionine-beta-lyase-PatB	unknown	unknown	gnl|CDD|224090
LR134350.1|VEG28483.1|1826898_1829946_+|Mannosylglycerate-hydrolase	unknown	unknown	gnl|CDD|223460
LR134350.1|VEG28482.1|1826032_1826881_+|Inner-membrane-ABC-transporter-permease-protein-ycjP	unknown	unknown	gnl|CDD|223472
LR134350.1|VEG28467.1|1811570_1813016_-|Inosine-5'-monophosphate-dehydrogenase	unknown	unknown	gnl|CDD|181127

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG28459.1|1804246_1805155_-|Uncharacterised-protein	gnl|CDD|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	0.000518357
LR134350.1|VEG28496.1|1836435_1837371_-|Prephenate-dehydratase	gnl|CDD|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	5.06408e-102
LR134350.1|VEG28492.1|1834285_1835224_+|Morphology-and-auto-aggregation-control-protein	gnl|CDD|176103	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily. OxyR senses hydrogen peroxide and is activated through the formation of an intramolecular disulfide bond. The OxyR activation induces the transcription of genes necessary for the bacterial defense against oxidative stress. The OxyR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The C-terminal domain also contains the redox-active cysteines that mediate the redox-dependent conformational switch. Thus, the interaction between the OxyR-tetramer and DNA is notably different between the oxidized and reduced forms. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.86349e-64
LR134350.1|VEG28478.1|1823701_1825105_+|Maltose-binding-periplasmic-proteins/domains	gnl|CDD|270453	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold. This group represents the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.19852e-84
LR134350.1|VEG28465.1|1810195_1811440_+|Cystathionine-gamma-synthase/O-acetylhomoserine-(thiol)-lyase	gnl|CDD|223699	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism].	1.28691e-156
LR134350.1|VEG28471.1|1815549_1816371_-|Shikimate-5-dehydrogenase-like-protein-HI_0607	gnl|CDD|183587	PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed.	2.60335e-159
LR134350.1|VEG28461.1|1805562_1807662_-|Uncharacterised-protein	gnl|CDD|176048	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology.	0.00370377
LR134350.1|VEG28474.1|1820671_1822021_-|Uncharacterized-sugar-isomerase-yihS	gnl|CDD|369267	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase). This family contains a number of eukaryotic and bacterial N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) enzymes (EC:5.3.1.8) approximately 500 residues long. This converts N-acyl-D-glucosamine to N-acyl-D-mannosamine.	1.17487e-95
LR134350.1|VEG28469.1|1813398_1815351_+|Tripeptidyl-aminopeptidase-precursor	gnl|CDD|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	3.49531e-13
LR134350.1|VEG28490.1|1832811_1834134_-|Serine--tRNA-ligase	gnl|CDD|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
LR134350.1|VEG28494.1|1835390_1836383_+|Lipid-kinase-YegS	gnl|CDD|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	3.33461e-30
LR134350.1|VEG28472.1|1816648_1820164_-|Minor-extracellular-protease-vpr-precursor	gnl|CDD|173814	cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	4.42347e-54
LR134350.1|VEG28480.1|1825104_1826031_+|Inner-membrane-ABC-transporter-permease-protein-ycjO	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.16736e-68
LR134350.1|VEG28476.1|1822180_1823404_+|Making-large-colonies-protein	gnl|CDD|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.15032e-33
LR134350.1|VEG28486.1|1830093_1831680_-|Maltose-binding-periplasmic-proteins/domains	gnl|CDD|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	1.23293e-18
LR134350.1|VEG28488.1|1831679_1832810_-|Uncharacterized-phosphatase-YwpJ	gnl|CDD|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.74772e-44
LR134350.1|VEG28463.1|1808747_1810079_+|Cystathionine-beta-lyase-PatB	gnl|CDD|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	2.05418e-164
LR134350.1|VEG28483.1|1826898_1829946_+|Mannosylglycerate-hydrolase	gnl|CDD|223460	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism].	9.79499e-153
LR134350.1|VEG28482.1|1826032_1826881_+|Inner-membrane-ABC-transporter-permease-protein-ycjP	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.16748e-64
LR134350.1|VEG28467.1|1811570_1813016_-|Inosine-5'-monophosphate-dehydrogenase	gnl|CDD|181127	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein.	0

Protein sequences

>LR134350.1|VEG28476.1|1822180_1823404_+|Making-large-colonies-protein
MRRGSNLPHVSSFNRAVVLEAIRHSGDGLTRAQLGRVTGLSAQTVSNVTRTLLDRHLVRETRVVAQEGRGRPGTALELDPAGGFAVGIHIDPSALGTAVVDLTGEVVVQNHGPLPSPTDPGALIEHLHHEVRRMVAEARVPSSRLLGIGVAAPGPIDDEAGSVSPPLLPDWGTVPLRPLLARATGVDVVLDKDVIAAAKAVLWTGDAPDRENFLVVYVGAGAAIIPVIRGQVFRGTSGNAGETMHLPGDPASGSPHRWTLGGCLGERELVAHAHRLGIDLPGAVGSWDPHVVSEGFSHLVGLAHDGQDRAVEVFDAAGRVLGTAALVVTELLDITAIVMTGPRWESMRPLCEPALLSVIDDHAVHGQPRPLTLHTSRLATCSGTVGAACLVLDRLFSPHHSRLLITQ
>LR134350.1|VEG28474.1|1820671_1822021_-|Uncharacterized-sugar-isomerase-yihS
MGLGWFGAPEHNRWLADETHALLRFARGAAVPAGFGWIGSDGEVDTSHPVELWITGRMTFAFSLGALMGIPGCRRFADHGVRSLSKVMRDHERGGWYSAVRHDLDAEGRGVPVDPDGRKECYQHAFVMLAAATATAADRPGAHELLREAMAAQDRYWWDDTYGMPVESYAADFTDPEAYRGINAAMHTVEAYLAATDVTGDITWLTRAVQIIDFAVNVQARANGWRLPEHYDTSWHPRPDYNKDEPAHPFRPYGVTPGHGLEWARLTVQARGALVARSLPVPDWMLDAAEELFERARLDGWRVDGAPGFVYTTDFNGEPVVHERMHWVVCEGVSAAAAIRRALLDDGRGEIEVEHYEHCYRSWLDYAEEFLIASPGVWTHELDRDNRPSTRTWAGHPDVYHALQTTLIPRLPVWPAMGQALAEARLDKPAAHIPIKAQPARRRGLFGRP
>LR134350.1|VEG28472.1|1816648_1820164_-|Minor-extracellular-protease-vpr-precursor
MRTIPARPRLLAAAATALAACLLMAPVSSAAPSDPGAATDPSSKITRALTLADGSRAENVPGRWFVELAEPAQSAGGSAARIDREQEALVEAIDDAGIDADVRTQYATLWNGVALDVDETELEALAALDEVVAIQPVVVIPSPGSEESEETEESEETDPSGGTAAGDGADQSTPQMTSSLGLTGADVAQSRLGYTGDGVRIAVIDTGVDYDLPEFGGTGTPGAEPATGDGSTSFPTAKVTAGYDFVGDAFGDPAAPIATRYATSPDAYPDDCNGHGTHVAGIAAADGQPGTEQIRGVAPDAELAVYRVFGCQGSTGADIMAAAMERAATDGADVVNISIAAEFVVFSDYPTAVAAENLASKGVIVTTSQGNVGQYGRWTMGAPAAAEHVLAVGSVDNTAEMSFYLSVSTTPGRQVHYTVASGSTAQVVRDDDVAVDLVASGDPAADGADEPTDASVLCQAPQDGSLTGKTVLVRAGACSFRDKVLNAQRAGASGVILDNDVEGSLAAVLEGDDGAVISVPVVGISLSDGEAVRAGLSASSTVTFSEGYAEFDVATAGLVSAFSSWGLNDDLALKPDLVAPGGLIWSTWPIENGGPRRTRSGTSMAAPHVAGAVALILQAHPEIKDAQGLQAFEEAAWRLRSTATPVTWTQAAGDTALLEPVARQGAGLIAVDRAIEAGLEASPGVLNLGQSQDHPAGRTQTVTLTNHSSSAVTYGLSHTDAVTVTGDSWTPVRGTSSPATVSTDGSSVTVPAGGSATIDVTISAPAGIDDGDFYGGWIVLTPASGDAQGVVRIPFSGVGGNLAQAEVIGPYTTVVDADGLPVDTSTYVFGRSTRTTEGMYEDRPGVVIEPLVPFRGAQLEVIAVAADGTVTDLGEATVDESWYVRSDAPMLVWTGSYLDATGAVRQAPTGQYQLRVRVLPVGEDGQDEEDWATWTSPTMSIDWRTEGYVDQSGLSVVSSTEASALVDDNVFTTVNQDQGAAYDIDLGAVYDLTRVHYTPDQGVASTHATSWTVRTSMDGVTWTEAASGQIDPARWAPAVLELPAPVTARYLRVEPANAQGGATTVGAAEIRVAGELAAEQPSVPPVAPTGGTADPSTTATPSDPAGSGGPIGSASTGASGASGQGVSGAGVSARGGGGTSLARTGASVGIGVVAAGLLLAGALLAVRRRRD
>LR134350.1|VEG28471.1|1815549_1816371_-|Shikimate-5-dehydrogenase-like-protein-HI_0607
MRDISKDTRLCISLSARPTNIGTRFHNHLYELLDLDFVYKAFTTTDIAAAIGGVRALGIRGCSVSMPWKEDVIALVDEMTPSATAIESVNTIVNDDGRLIAYNTDFIAIRTLLDTHEVPRTSCAVLGAGGMAKACVAALTDAGFGPGTVVARNATSGPALAEQYGWAWVASPEELADGAAELVLNATPVGMAGGPAENDLPVGPELMEAARTVFDVVAFPSRTPLVRAAEAAGKPVISGAEVIALQAAEQFALYTGVRPTPEQVAEASRISRA
>LR134350.1|VEG28469.1|1813398_1815351_+|Tripeptidyl-aminopeptidase-precursor
MRRMRRSLTCALTTAACLTLTATACQPLSPSTSTDPATAAATEPAAAASTSPSQPTPQVDSPSASPSPAAEAASSAPAEPAPSPSPAAEAASSAPAEPVASPSPAEPTSQPSSQPTSQPSSQVPSGLETFYAQELAWGECSDGSSGYQCATLTVPLDYSDPSGQTITVALKRLPASDGHAENGSLFLNPGGPGGSGLSYLTEVTPFLPADLLASYDVIGFDPRGVGASTPITCWSSEDLASVEAGTPGYAPVDDGALTEAPELDTSPQSEAEAETAPAAAGDTAEAAVSDGREAAALCEQHSEVPELLDHMDATTVARDMDVMRDVVGDERLAYLGVSYGTYLGSVYAEQFPGNVGRFVLDSAMDPALTRAEIHEGNMSSKESTVHAYVESCLGSGQCPLSGTTQEAVAQLTAFLDGLDASPLSVAGSATGLNRATTVSLIHAFTTDDPQYWPHLTQALTPALTEHNGTELVTQANLLASAGQNEADDSEATRPIEDVLTAMWNSEYALLAVHCSDYPETGDLASWDAQAAELRAAYPISYDKTGAYMDAFCHGWGHGSGAREPAAVSAEGSGPILVVGNTLDHRTPYAWAEDLVGQLDNGHLLTVEAAIHGQLGANTCSTGQMSEFLVTGALPEAGQTCPADPLPPLEG
>LR134350.1|VEG28467.1|1811570_1813016_-|Inosine-5'-monophosphate-dehydrogenase
MQFLNGMTPTFDLTYDDVFMVPSRSAVHSRTAVDLSTQDGSGTTIPLVVANMTAVAGKRMAETVARRGGLTVIPQDIPLDVVADTVSRVKSSHLLYDTPVVVKPHHTCGYALGLIPKRAHGAAVVIDPDTGVPVGLVDVGDVSDVDRFTQVREVMSTELLTLPEGIDPREAFARLKSAHRRLAPVVDASGRLVGLLTRSGAVRATIYAPAVDASSRLRVGAAIGMNGDVARKAADLVEAGVDVLVVDTAHGHQDRMVEAVTAVRAALPEGLPVVAGNVVSAAGVRDLVEAGASIVKVGVGPGAMCTTRMQTGVGRPQFSAVLECAEEADRLGAHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTHESPGDIQHDAQGRAYKESFGMASARAVQHRTAGEDAFERARKGLFEEGISAGRMYLDPARPGVEDIIDSIIAGVRSALSYAGAESIEQFRSKAVIGIQSASGYREGAPVPVSW
>LR134350.1|VEG28465.1|1810195_1811440_+|Cystathionine-gamma-synthase/O-acetylhomoserine-(thiol)-lyase
MSHSPQHTVPSNPAYDDRSGCRSAPIHHHPSWASWAEQSESWGTDTVLAHVGTSTDPTTGAITTPIHLSTAFGHPGMRQSTGYDYTRTAAPTRDVLQDALARLDGGAAGFALTSGMAAVQLAVTTLAPPGSRIVALEDLYGGTFRYLAVLAEQGVYEVDFVVGPEGLREALERPASLVLIETPTNPMMVQIDIAEAARWAHDAGALLAVDNTFYTPVICRPLELGADIAVYSATKYLGGHNDLMAGTLVVADPALGERLQYMLNTTGANLGPFDAFLLLRGLKTLALRMERHESNAARVVSFLESSPHVTRVLYPGRSGMVSFELAEDVDVSVFLESVRVFTFAESLGGVESLVTCPSVQTHADVPPEVRAAYGLSDRLMRLSVGIEDPKDLVADLRQALETARATETSSGQRA
>LR134350.1|VEG28463.1|1808747_1810079_+|Cystathionine-beta-lyase-PatB
MHSAHRPSPSCPQARPDTASEAAATAAPSGSPTLTCPSAFDLVHDRTGTGSLKWDFAAQRGRPASALPLWVADMDHQAPACVTSALLWRVRHGIFGYSEPDDAYDAALVGWFSRRYDWEIDPGWNVVTPGVVPALALAVRALSDPGEAIVIEEPVYYPFREVVEDNGRTVVSVPLVRGADGVYRRDAAALEEALSSTGARLLLLCNPHNPVGRVWSRAELCELAEITGRHAVRVVADEIHADLALPGRRTTPFASLGPEIAARTITCTSPSKAFNLAGLQVANILIADPDLREAFSRELAATGYSQPNALGLTACRAAYESGDAWLDELREHIAEARRHVVERLETIPGVEAGPCEGTYLLWLDCSGLLEASRLQAGELDAFLTQEAGLWLDDGAIFGAGGAGFTRINVACPRATLDQALDRLAAGVEVLLSRRDGRPVPLSA
>LR134350.1|VEG28461.1|1805562_1807662_-|Uncharacterised-protein
MATLFMNPGKLSDKIKALRDFGDDAGSAKNNIDRTSFDLNDPMSGSGVDSFLTLISRRIDDLRATADRVESCKNTILRISDNQIAPMNADGEIEIDVHEGVRIDSPADLENWGAAMVDAKDLKDLKERKSSGRLPSGRRYEELLESIKKHKKNKAYANGLVFEIGPENLTQIPLSIKRAYTARDPVSGREDEAIPNSGLDMAKHLGGVLATASTTWDKKRSKEVSEALVNSVRNEKDWGRITVLNAMLGRQDANRDGVNDLSFGREFLVNLGRGMEELPWKDIKAASAREANGQIGGLGDHLPAQSSEPLQGVLDAMGADPGAAVEFLGGREGNAKDVARVRELMSRHDLGENEWTDTWSGLAASTSNKYARQVVDDDHPPTLESKQAAVIASGVVNGIGESGVKVSDRTQGNLSETLANYPYAADAAARQADDPRDMGPDLPDQKQSSGAPAWTAGTSYQPNFSTKGLAGVVREVSRDEGHLKTVADSVADLQRARMMFAAANYRTGGGASLEVAIEANSATRAFFLGASRAGVEGDAAETDKRNKIIIDALCAGSGFLPGPGEEVAKIWGYGIGRAADAGRTAMSEQLTQNLARALNESEGMMRDGNRASVVSTVVQLVSMGVIPAEQANAAVPGLVTEKGVDPTKLSPEALDRLYTKFVEDPDGQFDGAIRDSLGDAGTNYEVSYQRGNSSAGGSG
>LR134350.1|VEG28459.1|1804246_1805155_-|Uncharacterised-protein
MWAQRREVALARCVAAVHCVPSAVALTHEAAALVHGLWLWDGEPDVRVAVPATPGRTVRPLEPIVFRPDRLPCESTSGRSCSIRKRRSSLGEQETTVVNGLPVSTLMRTAVDCAFDLPARESICVLDAAMRALCRPDRFRPEVGAARWRRARAELLAAVEAQGPRRGAARARAVAAIASPYAESPGESVLRRFVLTLGLPAPVLQRPVTPSGPGGRMSEFFIDLAWPDLRLAVEFDGRAKYERNNDLWEEKRRQDLVTALGWRFERVTWEDLRDEAALAGRLMTHFPDHVVRSASRVRGLWE
>LR134350.1|VEG28478.1|1823701_1825105_+|Maltose-binding-periplasmic-proteins/domains
MIIPSPSPGALRRPCPLTASRRSFLVGAGLGAAAAALAACSGSSGERSSTTLTIAYQKTSTFFQLDDLLHKAKEEFEAANSEVTIKLSPIEAEQDQYFTKLALMNGSSDTAPDIIYEDTFQIRSDAAAGYLMPIDEYLEGWEDWSQFVDSAKEAGVGDDGKTYGVSMGTDTRGIYVNKTILAQAGLPADWQPTTWEEILAAARAVKEKVPDVIPLNIYAGKAGGEQTTMQGFEMLLYGTDDVLYDDSTQKWFTGSTGMLDSLTFMKTVYDEGLGPDLDLALDATIGSRVSSSLLPEGKLAIAVDGSWLPGFWISGDNEWPQWQETIGLAKMPTQNGQGAGFTSMSGGWTLAIGSQCANPEAAFQFISIALNQENSLKYATENAAIAVRTDVAESEEYLGYNPSFEFFSGLVEYTHFRPATPDYSQISANIQTACESVITGQATPQEACDTYDAGLVKIVGDDKVQEA
>LR134350.1|VEG28480.1|1825104_1826031_+|Inner-membrane-ABC-transporter-permease-protein-ycjO
MSPTATGAATRTGKGAARRRAGRTLGRLAPILPAVLLLASFLLGPIVYSLYGSLTNRAMSGYRAASPEFVGLDNYVSLLSDPGFLRSVVLTAVFVLASAIVGQNVLGMVLAVLMRHAPRPLPSVVGGIVVVAWVLPEIVAAFACYAFFSSDGTLNAVLGALGLPEPSWLLNLPMLSVILANVWRGTAFSMMVYHAALAEVPPEVIESAQIDGAGPLQRLTRITLPMIRRSIATNLMLITLQTLGVFTLIWVMTGGGPGTSSSTLPVLAYQEAFKFSQVGYGTAIATVTLVVGAVFSLVYMRVLRPEVD
>LR134350.1|VEG28482.1|1826032_1826881_+|Inner-membrane-ABC-transporter-permease-protein-ycjP
MPASLSLASPRRRGVTVAASASLALIGLAFVLPLAWIVLAAFDADATVSVKPPSSWTLENFAAIMSVDGTLRPLWNSALISLGTAALCVIVSVLAAYPLSRFQMRFNRAFLYTILFGSCLPITAMMVPVYALFVSFRLLDSLPGTVLFMAATSLPMAVWMMKNFMDSVPISLEEASWVDGASGMAALWHVVVPLMKPGIAVVFIYVFTAAWGNFFVPFVLLMSPENQPAAVAVYTFFGAHGEIAYGRLAAFSIFYSLPVLLLYVLVQRRSGGGFAMAGAVKG
>LR134350.1|VEG28483.1|1826898_1829946_+|Mannosylglycerate-hydrolase
MHTFPLLTEQRAERMLREHVSAAIHRETLPLTLSAWEVPDEPVPFAEAVAQDFTPTSVGTAWGAPWRTLWLRATGSVPPRWRQEADAEVELVVDLGFTGTQPGFQAEGLLMRADGSIVKAVSPRNRTAPWTAEPDRIEVYIEAAANPDVAGGFGFAPTPYGRKSTAGQDPLYRLRRVDVALRDLEVDALAADMGVLLELAAALPPDSTRRARIDAALDRATDHLDPRDIAGTAARARAELVEVLASPAHASAHHVLAVGHAHIDSAWLWPTRETVRKCVRTFSSVLALMDTDPDFVFACSSAQQYLWVKEARPDLYARIKERVAEGRFVPVGGMWLESDTNMPGSEALARQMIEGKGFFLEEFGVETLDAWLPDSFGYTGSLPQIIRAAGSRWFLSQKMSWNEVNRFPHHTFTWEGIDGSRVLTHFPPADTYGARLSVAELRHAESNFADKRVASSSIVPFGYGDGGGGPTREMLAAAHRLASLEGVPTVELGSPNTFFERTESQPGGTAGLPVWSGEMYLEFHRGTYTSQLRTKQGNRRSEHLLREAELWATTATVREGVPYPYEEIKECWRTVLRNQFHDILPGTSIGWVYEQTEKEYAEVARVLKEVIEASAAALVGRGTRRLRLNAAPVEVASVPSLGIGPGAPVAGRTRVERHGGGAVLDNGLLRVTVDEAGLLTSVVDLRADREVLSPGARGALLQLHRDVPRQWDAWDIDAEYRRVVDDVVDVEGLTVEQDGADGLVRLRRTLGEASSLSQEIRLPAGAAQVVLDLDVDWHERQRLLKLAFPLDLMAETSTSEMQFGHVSRPTHQNTSWDAARYEICAHRWIHVAEPGYGTAVLNDSTYGHDVTRGQDAEGRPSTVVRLSLLRAPLFPDPEADQGRHRLRVALRPGARIEDAVAEGYVFNLPERVVTGDHGVDPLVSVEGRGVVVEAVKLAEDRSGDVVVRLYEAHGARTRARVEPGFPAGPVRTVDLLERDLPGPVLTEVSAGPGGGKATALELRPFQIVTLRIPRA
>LR134350.1|VEG28486.1|1830093_1831680_-|Maltose-binding-periplasmic-proteins/domains
MSRSPWAPLGPRSTVARSGSRALPRSAARSASVLAVLALAASATTACSPGGGGTEATDGAGCEQLEAYGTVAQGQTVTVGTVFSGNEAARFEASLARFEECTGIDVVHSGSDQLESVLRDAAASGSPSADPSLPDLAVVPQSGLVTELIDAGAVSALPDTVGANIELGWDRAWSDVGAVDGTLYAAPLMASVKSFVWYSPAAFEASGYQVPRTWEELVELTDQVVADHPDGAVTPWCMGVADGEATGWPATDWLEDALLATQGTGAFDSWADHEAPLDSDSAVEALDAVGDLVLADGHVPGGRAAAATTTVEEAGQQLVSGTCLMLHASSSYETVLPTGTLVTDANGEHGVKVSPTTTASAAPTTGQGGPAAEQGSPAATGTASAQASPTVAVPGAVSAFLLPSRGDDDGGTPVLVGGDYLVALRTSEAAVAVMGYLTSAEWAQERVELGGMASANRGVDASDIESDVARRATELLQSRQTVIRLDGSDTMPSAVGTDALWTALTQWTAGELSSEEALAQAEEAWPSD
>LR134350.1|VEG28488.1|1831679_1832810_-|Uncharacterized-phosphatase-YwpJ
MTDDDLLRSGDEPRPRTGGPGVIAPAPGVPADLALASSGPVPAAVPAAMPSAGPPDPVLGASSEVSAIGATTPGPLTHDDYHALVRRRMADLDAIDPPGAAGTRLAPGPALLVALDVDGTILDLGGRVSERVMAAIARLRTYGVQVVIATGRGIEAALPVARHVGLTTGWMVCANGAVTLRMDPERPGGYEIVEQITFDPAQAIDALHEAVPGGILAVETPGQPFRVSRPFPDGELIEDSVVRPLEELRSVPVSRVILRAPGMDVDRFAEIVRGSGLHSVEYAIGWTAWLDVAPQGVTKASALEALAARLGTDAGHALAVGDGANDVEMLQWAGAGVVMGSAPQWVKDRGDVLTEPVWHDGCAAVLDALVERTRRI
>LR134350.1|VEG28490.1|1832811_1834134_-|Serine--tRNA-ligase
MAKATVGAPAALATLCPMIDLRALRDDPEPFRASQRARGADVSLVDRLIAADEARRSSLGAFEALRAEQKTVSRSVGAASPEERPAVLARAKELAERVRAAEGASAQAATELDELMMQFANLIEGAPSGGEEDYVVLRHEGPEPRDFTAEGFEPADHLALGEALDIIDTRRGAKVSGSRFYFLKGWGMRLELALMTAALDRATAYGFVPMTTPTLVTPQVMGGTGFLGAHSDEIYYLPADDLYLTGTSEVALAGYHTDEILDLSDGPRRYLGWSTCYRREAGAAGKDTRGIIRVHQFNKAEMFAYVRPEDAVEEHERLLALEEEMLALVDLPYRVIDTAAGDLGSSAARKFDCEAWLPTQNRWMEVTSTSNCTTFQARRLSIRERREGRTSPVATLNGTLATTRWIVAILENHQRPDGSVVVPEGLRPYLGGLELIEPVA
>LR134350.1|VEG28492.1|1834285_1835224_+|Morphology-and-auto-aggregation-control-protein
MPPSSLPSFSQLRAFVALCDHQHFGEAATTLGVSQPSLSQAITALEKRIGGELVERTTRRVLVTPLGETLLPYARDAVLAAESFNEAVVSQGAALTGMLRLGLIPTLAPYLAPVILDGLPSELPLLQPELREMVTGDVLDMLNQGRLDAAIIAIDVDLHRAVAIPMYDEPLVILVPPNHPWAGRDDIVPSDLDSQDLLLLDEGNCLRDQTLALCQRYGTVPPVAVATTLLTVVRMVTHGVGITVIPEGALPMLGTEPHAVARFAEPTPVRRIGLVHRSSSSRATDFARLAHVITGLTREAGLPALSLTDRED
>LR134350.1|VEG28494.1|1835390_1836383_+|Lipid-kinase-YegS
MACVVLNPSKPAVTPAVRAHLARALSAAGYASPVWMETTPTETGATQARLALASGASLVVAVGGDGTVRSVAAGLAGAQADMAIVPLGTANLAARNLGVPVGRPAEAIELAAHGAALATDLAWVSTEPGEDSPAPPGGWARPTLGAEHACMIVAGLGFDAGLVASTRPALKARIKWGAYALAAFQNLSSPRMELVLGLEAEDDPHRVERLRARCLLIANGGRLPAGITLLPGARMDDGVLDVAAIDTVAGVVGWSSLARQVLAPRTSVPRTVQDDRLLRPTGRVLRRLGRTVTVRLAEPALVQVDGDLLAPTRGVRVRLQPGALRIRRPA
>LR134350.1|VEG28496.1|1836435_1837371_-|Prephenate-dehydratase
MTSTWAFLGPSGTFCEMALQQVAPDNARLEPCQDVATALDRVRERVADSAVVPIENSVEGGVNATLDNLVASAPLVIAAEVAVPVTFVLAGRPGTSLDRVRAISTHPHAWAQCRGWVHLNLPEASYVAGTSTSAPARALAESDDPLSFEAVLCNPLAAQRYGLEVLAGGVADNPDAVTRFVQVTRPGRVGEPTGADKTTLMVQAPHDRAGALLDMLEQFSARGVNLSRIESRPVGDSLGRYRFSIDVEGHIREERVQAAFIGLHRTCPMVRFLGSYPRLDARPVVVPAGTSDKDFIVARAWVADILAGRTI

Crispr_ID: LR134350_10

• CRISPR_ID: LR134350_10
• CRISPR_location: 1893898-1893981
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134350_10

Consensus_repeat	Method
ACCTCCCCGTGCGCCCGGCGCCC	CRISPRCasFinder

spacers of LR134350_10

>10.1|1893921|38|LR134350|CRISPRCasFinder
GGCCCGCGAGTCCCGGACACATCCCGGCTCGAGTCGGC

CRISPR arrays and Neighbor proteins around LR134350_10

CRISPR arrays

The CRISPR arrays of LR134350_10

>merge|LR134350|10|1893898-1893981|CRISPRCasFinder
ACCTCCCCGTGCGCCCGGCGCCCGGCCCGCGAGTCCCGGACACATCCCGGCTCGAGTCGGCACCTCCCCGTGCGCCCGGCGCCC

>LR134350|10|10|1893898-1893981|CRISPRCasFinder
ACCTCCCCGTGCGCCCGGCGCCC	GGCCCGCGAGTCCCGGACACATCCCGGCTCGAGTCGGC
ACCTCCCCGTGCGCCCGGCGCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG28593.1|1895363_1895771_+|Membrane-protein-of-uncharacterised-function	unknown	unknown	gnl|CDD|377198
LR134350.1|VEG28602.1|1901662_1902421_+|Iron-import-ATP-binding/permease-protein-IrtA	unknown	unknown	gnl|CDD|99790
LR134350.1|VEG28589.1|1892713_1893868_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|379525
LR134350.1|VEG28606.1|1904517_1905972_+|sensory-histidine-kinase-UhpB	unknown	unknown	gnl|CDD|226951
LR134350.1|VEG28581.1|1885777_1886908_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28587.1|1890273_1892442_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28594.1|1895977_1898107_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28596.1|1898117_1898330_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28577.1|1882857_1883253_-|Enamine/imine-deaminase	unknown	unknown	gnl|CDD|129116
LR134350.1|VEG28571.1|1879981_1880575_-|Transposase-and-inactivated-derivatives,-IS30-family	unknown	unknown	gnl|CDD|225382
LR134350.1|VEG28579.1|1883498_1885178_+|Phosphoglucomutase	unknown	unknown	gnl|CDD|236050
LR134350.1|VEG28583.1|1886964_1888944_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28573.1|1880653_1882000_-|Transposase-and-inactivated-derivatives	unknown	unknown	gnl|CDD|307151
LR134350.1|VEG28598.1|1898571_1900287_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|226089
LR134350.1|VEG28604.1|1902845_1904306_+|Adenylosuccinate-lyase	unknown	unknown	gnl|CDD|236452
LR134350.1|VEG28600.1|1900283_1901033_-|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA	unknown	unknown	gnl|CDD|224054
LR134350.1|VEG28591.1|1894045_1895137_-|Putative-phenylalanine-aminotransferase	unknown	unknown	gnl|CDD|179559
LR134350.1|VEG28575.1|1881999_1882518_-|Transposase-and-inactivated-derivatives,-IS30-family	unknown	unknown	gnl|CDD|225382
LR134350.1|VEG28585.1|1888940_1890245_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28608.1|1906002_1906215_+|Uncharacterised-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG28602.1|1901662_1902421_+|Iron-import-ATP-binding/permease-protein-IrtA	gnl|CDD|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	2.20351e-29
LR134350.1|VEG28589.1|1892713_1893868_+|Uncharacterised-protein	gnl|CDD|379525	pfam14256, YwiC, YwiC-like protein. The YwiC-like protein family includes the B. subtilis YwiC protein, which is functionally uncharacterized. This domain family is found in bacteria, and is approximately 130 amino acids in length. There is a single completely conserved residue G that may be functionally important.	2.29283e-29
LR134350.1|VEG28593.1|1895363_1895771_+|Membrane-protein-of-uncharacterised-function	gnl|CDD|377198	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV. These proteins are predicted transmembrane proteins with probably four transmembrane spans. The 1.E.40 is represented by the mycobacterial 4 phage holin, but it also contains many cyanobacterial. proteobacterial and firmicute proteins. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as in those of the bacteriophage of these organisms. The primary function of holins appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded the enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases.	4.981e-16
LR134350.1|VEG28604.1|1902845_1904306_+|Adenylosuccinate-lyase	gnl|CDD|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
LR134350.1|VEG28598.1|1898571_1900287_-|Uncharacterised-protein	gnl|CDD|226089	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane].	1.55693e-43
LR134350.1|VEG28571.1|1879981_1880575_-|Transposase-and-inactivated-derivatives,-IS30-family	gnl|CDD|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	8.29371e-62
LR134350.1|VEG28579.1|1883498_1885178_+|Phosphoglucomutase	gnl|CDD|236050	PRK07564, PRK07564, phosphoglucomutase; Validated.	0
LR134350.1|VEG28573.1|1880653_1882000_-|Transposase-and-inactivated-derivatives	gnl|CDD|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	4.87089e-119
LR134350.1|VEG28577.1|1882857_1883253_-|Enamine/imine-deaminase	gnl|CDD|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.49727e-56
LR134350.1|VEG28600.1|1900283_1901033_-|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.16257e-68
LR134350.1|VEG28591.1|1894045_1895137_-|Putative-phenylalanine-aminotransferase	gnl|CDD|179559	PRK03321, PRK03321, putative aminotransferase; Provisional.	5.97692e-142
LR134350.1|VEG28575.1|1881999_1882518_-|Transposase-and-inactivated-derivatives,-IS30-family	gnl|CDD|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	7.03137e-22
LR134350.1|VEG28606.1|1904517_1905972_+|sensory-histidine-kinase-UhpB	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.00094e-13

Protein sequences

>LR134350.1|VEG28589.1|1892713_1893868_+|Uncharacterised-protein
MTQQRPSDPSERHVEYVSGEPGAGPSAVSPASAADGPGDAAGPGGPGPGGAGGGRERAAIPHQQSRPGPEDDRLLATGERVRPSSARQGPPERRPRPTQEEIRRQPGRRAWVPRQHGAWSMLVLPPVMGWVVGGVSWVNLLLLPAWWGAYFAYWAWSQWLRTRSAGRRALLVLPLGVYTAWTAMLALLTVIAAPYLIQWAVPLAPLFAVAVHQVWRGHERSLASGLATTAAASLMAAVTYSAAVDGAGGFLGTGGTPGLPGASPNGELTGWAWTWLVTALTAAYFCGTVPYIKAMIRERFNIPLLVGTVLAHAAVAALTAWLAVGGYVSWALAALWVVLAVRSLVMPLIQWHLARSRHRPLRPGVMGVVEIVMCVLLLVTVAVS
>LR134350.1|VEG28587.1|1890273_1892442_+|Uncharacterised-protein
MSDELNDAREGADSLTAVGGGADGGAAASGDRTTGDRKGTSGDRTTGDRTGGREPADVLSPTAPSVRGHLAVRTLRALRLGCLLALAVAYGLSVLWGSGLPIDREALVPRAPVIPIAAAAWFLGLFVAWRPADGKEFHDTPAAVRWITVFYSVLVVVVIACAAIGSVHVARVWWEVHRYSSVDLAELLAVLIGIVGTGTFLVTDLLLRLVYRTRSRLVPAPPPGRWPLRHLRRPLHGATGWARPGLVAVALTPSLVLGTAAAITHAWPETPNRLTTEQALPDPLPVPGVLAPEAGWSLDVPDLLDVAAGAAGPIMLTPGGLTALDPRDGSTAWTLEREGASFASFRSSLTRISRYSPFIVTSPDRRYLAVRVEGPGDDVLLDEETTVVLTIDSLTGEVTGEHLLVDGGVQLTDSAVLCGETAYSLSTGAELWRMGGESTSGSGEEWEGFPDSYSGPAGHASFILSVDSTDTDIVGTTVDLHVVPDTDPSAGARVTGVMAHDDLEPLVVDGWVGLYTSSTGSAAEGWPAQAASLDALAGVPGVPDDRVDLGRTVGANEAASVAVQDFVVLPTGVPDDPGFEMRYRDCGWETTSMVQAVLDLDTMTVTPPERTPGLAAATIGGTLLDLGEAVAPALRIQPGDGGAATTIPVSLDPATGEPEESVLSNQLPAGPHDLCGAKTDDAPYRALSSPGVAVIVLQTTPSLDATDWNDTYRLYGVPGASS
>LR134350.1|VEG28585.1|1888940_1890245_+|Uncharacterised-protein
MRSAPIRRLFATVLSLTVLTACAADPVPEGAPTPGPPLEAQVGPGPGASALITRTTDSGSGTWEVELEMESRDHVGSTVPTPSGPIVVLTDRPDHEDLASWSTIVACLEAGTGRLLWSVSINSGLESPLNTYRAQGSQHEYVGVSPWYAYGAGAVVVSPDGRHVSLQLKANDYAAPADSRTTFVVLDTATGDTARVVEVSGLVLNQALTDTELVVQTAQDTVPAGSGRLLAASLTDPRAEPTSVRTDLWLAGSTTDSVLLSPVDLGTCSMANCAATTITRMTTSGRVIETIASVYRIHSAGRVERYIDPAAASPLINPVINTSGAAEQDVAWLSTRREVLDPATGTSVEITGREATRITLPTAPGLLLSTATAEDTDADGTLRVRATPTGWIAGPGDGEGQIHDGQPISVRFEYPDEAPKAVTVSASPESLDDQ
>LR134350.1|VEG28583.1|1886964_1888944_+|Uncharacterised-protein
MPDPAHLPRHPRGRAAHAARVVRALRLGALIAVAALVVLLVLTWPSSAPDLEGNNVNIVITGLWIGFVWAVARLQDDLRRVGTVIGILLTALPGLRVVRAVLGAWWESYRESSVDVPVLLVVAATTTGVIALITLDILLLHLRRSTGIGRTDPNDPARWRPLREPLPEEPGQAQGPGGTGGPRRWVTATATALPVVVFLLAATLPTAALRPVNQVIASPVPQAELPQRPTIPATEVSWTYRTDGLLAMAAGAAGPILVRDGEVEALNPDDGTTRWRYTRPGASFTDLRPRITENEEVLLVVSPDARHLALRIADYVKVLDMRTIVTVVLDAVTGEVVLERESTTLDTLQLTDSVLLDGYDAVSLDDGRTLWSLPRPEQDEDPEPQDPDDWTGPVAYSGPAGHSTLIVDVDYEDNGSSLTTNATLTLVPEGDPTATTEVPHVAVDPAADSVVVVDGWTGQYSAGAPVIQGYDGKDDVVPGWDMQAVNLDELASGADGSSRTIPLGQAPGIHGAASTAAGTLVTLAPVTAAGVEGRPATTGLWVGAVLDTITGAVSPGDQYPGLAAARLGTTRTVDNAEVTRWVTVELADGSPPVRLRIDPTTVVNAARFGGCSPQQISGWGYLDDCAAAMSAPGVIVIALDAGRYPENAHILYGLVGQSR
>LR134350.1|VEG28581.1|1885777_1886908_+|Uncharacterised-protein
MCLAALVLPVSACTQAKGPEQAVTVTQVQSLPSGNHDSDLLHLLPTAGGSIDVVTDCDEETEVCSSAVVSRDAVDDSLQWVVELTPAVHLSSSCPPPTGLYGEYHLGMDFYLSEAFGPAVVSPDGRHIAMVTCPALELDDDGWYVTDQRSGIVVLDAASGRMVRTIEVSGYVLGQVLTNDALVVQTAQDVNPALEGTLTIAPLTDTSAAPTTLPADQWLVGSADGSVLLSPRRAANDCRLDPCGPMAVTRMSTEGTVLETIPGVERVYPGGWVKRFTDPSAAVDLAVEDSTKDREERDRNARAALGREVLDLDSGATVDVTGMDVEPTALPTGPGLLVSQPADDEGDPAATSTPVLWLSAADDGRPHTEGLEAFSR
>LR134350.1|VEG28579.1|1883498_1885178_+|Phosphoglucomutase
MHSRAGLPAQPEDLIDVDEVVNAYYELVPDPSVPAQKVVFGTSGHRGSSLDTAFNEAHIVATTAAIVEYRRSQGTDGVLYIGRDTHALSEPAWRTAIEVLSGAGVTTAVDSRGSYTPTPAVSHSILLANGATTPEGVRTSGPGLADGIVVTPSHNPPRDGGFKYNPPHGGPADSDATGWIAARANELLADGWQDVPRVPIAEALDGNYVIKHDYLETYVADLENVVDMDAIREAGVRIGADPLGGASLDYWGAIGERYGLELTVVNPKADPAWPFMTLDWDGKIRMDCSSPYAMASLRGAMTPDAEGRTPYDVATGNDADSDRHGIVTPDGLMNPNHYLAVAIEYLFTHRPGWPAGAAVGKTLVSSSLIDRVVAAMGRELIEVPVGFKYFVPGLLDGSVGFGGEESAGASFLRKDGTVWSTDKDGIILALLASEIIAVTGKTPSQLHVEQVERFGASAYARIDAAATKEEKAKLGALSPEDVTATELAGEPITARLVRAPGNDAPIGGLKVTTANAWFAARPSGTEDVYKIYAESFKGEEHLALVQEEAKKVVSAALGS
>LR134350.1|VEG28577.1|1882857_1883253_-|Enamine/imine-deaminase
MPTAVSTTGAPAAVGPYSQGVSTGDEPGSLIFVSGQVPLDPSTGTLVDGDVAAQAQRVLTNVGAVLEAAGLGYGDVVKTTVLLADIADFAAVNEVYARFFTGPVLPARAAFAVAALPLGARVEIEAVAQRP
>LR134350.1|VEG28575.1|1881999_1882518_-|Transposase-and-inactivated-derivatives,-IS30-family
MVGTTRPAGRGRGGSGDGFEVMVRGTGHGRRLGAQGRGAIAAGLARGDSLASIARFLGVAVSTVSREVAAGGGRQAYDPQARHAQARAARARPKARVLDSNDQLRALVVQGLRQRWSPQQISRRLAADHPERDDLRVSHETIYQSLYVQGRGTLRAELGGVFNGLCKPSLKD
>LR134350.1|VEG28573.1|1880653_1882000_-|Transposase-and-inactivated-derivatives
MTVTDEKTGPAGGRGVVEDLVASGGLDGLFERIDSGEVGLTGADGLLPALLKEALERGLQAELTEHLGYDKGEQAPVARGNARNGTTVKTISSEVGSFEIEVPRDRAGSFTPRLVRKGQRRMDGLDSMIISLYAGGMTVREIRHHLESTLGVELSVGTISRITDAVAEAVLDWQRRPLEEFYPVVYLDAIRVKVRVDHRVTTRSAHIAVGVDMDGIKHVLGIWVQAEEGASFWAHVCAELANRGVKDVLIVCCDGLTGLPEAIEATWPDSMVQTCVVHLIRASMRFVAYQDRKKVAAALKQVYAAPSEEAALEALAAFSSSPLGDKYPETVATWDRAWERFTPFLAFPPMLRRVIYTTNSIESLNYQLRKISKNRGHFPSDEAAVKLLWLAICNIEDKRARERDKDRNLPADKRKAKPRVVEGRITTNWKQALAQLATAYPDRINPHL
>LR134350.1|VEG28571.1|1879981_1880575_-|Transposase-and-inactivated-derivatives,-IS30-family
MPRSALAGPLASRPWLADARISTRPAQVADRAVPGHWEGDLVMGAGNRTAMITLVERTTRLVLIAPLLTDHTATTVATVLETMIKGLPRSMARSLTWDQGGEMAQVARFRTATNLEVYFCDPHSPWQRGTNENTNGLIREFFPKGTDLSTYPLHAFEQAQHLLNTRPRQTLDWATPAEAFNRLLQKTEHDTTIALTT
>LR134350.1|VEG28591.1|1894045_1895137_-|Putative-phenylalanine-aminotransferase
MSAPSTPVRIRPSVASLPSYVPGARPGSQEVAKLSSNELPFAVQAPVLAALTEAAAGVNRYPEMTGQTLVEALASLHGLSPEQVVVGNGSVALIQHLLDTVCEPGDEVVMPWRSFEAYPICAAVAGAEPVTVPLTQAARHDVPAMIAAVTPRTRAVLACTPNNPTGPALSRAELRGLVEGVPGHVVVLVDEAYLDFVTDSRVGDALGLLEHHPNLVVARTFSKAHALAGMRVGYLMGEPGLIGAVRSVSTPFGVGLPSQAAALAALAPQARAETARRSAAVAAERDRVVAALRADGWEVPDAQGNFFWLGVGGRAEDLAAHFAGAGLLVRPFRNEGVRVSVGTPAENDRVLAAAAAYPHRGAV
>LR134350.1|VEG28593.1|1895363_1895771_+|Membrane-protein-of-uncharacterised-function
MEFIVRTIGNAAGLWLAVVLLDGMSVPGAPSTLLMIANLLVVGLVLALVNSLVKPVARFVAFPLYVLTFGLFALVVNGAMLLLTSRITDALVGVGAEAGVALGLHVGSFGTAVIGSLVISVVSSLIVSVLGPKEE
>LR134350.1|VEG28594.1|1895977_1898107_-|Uncharacterised-protein
MSPSQQVADPTPEPPPEPAERPVSSATPSSAPADPSEPAGSAGICRPGQLMWPGMQEGTKVFVSGGAYSVSTEDLDDFASTLTTAAQWLEDASVHAGAALAGVRDAVAGDQVSLGGSLAPGAGAQESSAAVSPATGIMPWAVAGAIHPAFYTLLNLAVSPLLTVPTAQPLTQLAFELRRLTAITQIETLTGSLDECAAALHDLASQVSAASETYGVAESAAGTTPTAISMWLSAARLLGYSPGWKTASSLLALAGVITRALGLTGPGLASEDQAAVVQNAQVLLQDADLADWVAEDLTVLVILAGLGARAQGPVSPTIEQYLAGIAEDIDEPISRKLPDQVQVGSRMVETSSLTPMQRVAYYLAMLSESTGEDWHGRRTGVTVTPRGGQGMTVPPGVEDPFGLGTTVTAMGAEDWRRGRTVTGGTFARSGHARSADSAGDPLTLDSVSGLIEYADSVKATDSDSGAISILRTTHEDGTNSWVVVIPGTSDWGVGSSNPQDQLTNFEAVSGRPTDMEAAVVTAMRQAGIQPGEPVGLYGHSQGGATAVNIASDPAIAEQFDITSVLTAGAPTAGAVLPSDVTAVHVEDVRDSVPALDGALTPRTTSRTVVTIDSNDSGIEGNPHGQSVYAQTTEGMAGHPSIDEYNEGLAALTGVGEDGAQTTEMIFDITRESAGVPDDPPVDPPTYPPGSYLPGAPLGQYYPYPANPSP
>LR134350.1|VEG28596.1|1898117_1898330_-|Uncharacterised-protein
MTATHISFARDDAETGVSMVPTLIPLGWTGLAASACQTDLDDAHVLLGGLDALLTAAYDAAAAVDDAAAD
>LR134350.1|VEG28598.1|1898571_1900287_-|Uncharacterised-protein
MSPAEPGGAEEPGGADTQPFVVGDRLAELLALAALARAMLLRELRGLLVWVLGMGALCWYSVDALSRSYRTEELRLAAGVMERTPSMAAFTGPGHGMEAVADGVAPSLAALVANELLVYVALGLAVLAIVLVVRHTRATEESGQAGLVRAGALRPGAEAWVVLLVLDICLTAVGLGVWAGLVLGGLGASGALAMTAGSVGVGLCLGAAALLAAQTAPSARSARGAALLALLAAFSLRAVGDVLHSLGQPGAWLSLLSPIGWAQAMRPWTGEAWGWAVVLVVVADGVALLALALAARRDLDSPVVAWPSRPGLGRPGPRGPWTLALRVQASAAAWWVVGAVAMAALYGCLTGSLEGSLGTIVQESEYLAAFLGGGFAARSYVSLVLTFLALVAAGAGVAVMGSAWRDELAGRAQALVAAPRPRGQRVLTAALAAAVGSLATLVAGAACLGLTSAATTGQRELALDSLLAAFGAWPACLALIGAGALATGLGRAVGPVAWGLFAWTAMLTLLADLLDLPQWLRDLSVLEHVPQVLTLGHASPSLSWTGALVLTGLAAVLLSAGAWLAGRRDLA
>LR134350.1|VEG28600.1|1900283_1901033_-|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA
MGSAASPAVEVEDLSKTFGRGRRAVRALDGLDLRVDPGEVVGFLGPNGAGKTTTIRILLGMIRAGSGTARVLGADPWSDAVRIHRRLAHVPARTALWPSLTGAQALDALEGLRGLTGPAPRRSELIERLDLDPSRRIRSYSTGNLQKVALVAAFSVDTELLVLDEPTTGLDPLMEEVFRQLVREAAGRGTAVLLSSHVLSEVTALASRATIVLRGRAVDDLALTPGTDLESVFLSHARTAAGTDAGTGA
>LR134350.1|VEG28602.1|1901662_1902421_+|Iron-import-ATP-binding/permease-protein-IrtA
MPRGVQGAVLRLLRAPEHVLAVTEVRELPPYTEVTVRCPTLLGASAATLPPTTWVRMWIPEGGREHQRAYTLTRVDRATATARILFLHHTPSGPASRWARTAEPGDTVPVQLLGGTSYRPPREDDSVLLVGDGASAPAVAEALSHAPAGCQTQVVLAAQAGHLPPGVSPGTGSHTLTLVDPGGGQERVLAAVSEVLADAGTPSWAWVAMGSGTTRAVRSRLLNAGVPRRSIQHQAYWVQGKAMGTSGPAQPG
>LR134350.1|VEG28604.1|1902845_1904306_+|Adenylosuccinate-lyase
MSREPRVDLSTLTPPVALGPLDGRYRAVAAPLTDHLSEAALNRARLHVEVEWLIHLTDNRVLPGTPVLSEAEKAYLRGVVETFGAAEIAELAEIEAETRHDVKAVEYLLKRRLTQAPTVPGLSGADSGPTVLPDLTEVVHIFCTSEDVNNLSYGVTIRDAVERIWLPQARGLVADLSSMAHEHADAAMLARTHGQPATPTTLGKELAVLAFRLSRQVRRVESTEYLGKINGATGTFGAHVVAVPGADWQAVARSFVESLGLTWNPLTTQIESHDWQAELYADVARFNRVAHNLATDVWTYISLGYFHQRLSAQGSTGSSTMPHKVNPIRFENGEANLEISCALLDSLAATLVTSRLQRDLTDSTTQRNIGVALGHSLLAIDNIRRGLAGLDVDRTRLAEDLDATWEVLGEAVQQAMRAAALAGATGMADPYERLKELTRGKKVTPEGMREFISGLGMPREVEARLLALTPATYTGLADRLVEHLDD
>LR134350.1|VEG28606.1|1904517_1905972_+|sensory-histidine-kinase-UhpB
MNTSVLSPASSSEHSPTPSPGPSAVRADRSPGAPSHRWAHRTVTGQQPELRSWPTHVPRWLHGVYLVIGVVLIVLCPWGAVGEPGGLLFLLASLALSVSVPATSWSPVPGSLMALVAFAVLAAAPQEATIVSTAVLLNAATLHARGVPHAFAWAFTLSQLLVFTVANRGASVVQDALLPWGLLTAVAVLAGTAVRIVRGNADHTRRRAARALTAQRQLMARELHDTSVHDITTMIMRAERARTHTTDPETLADLELIASVGHQAVGELRGLLHMMRLSDGASAWSTALPAVLVPFDELIGRAETELGQAGISLTTHVEADLEELPRQTRINLARILGELFANMGKYAVRGSSATVFIDLVPGHLRCVAINRVDPRALGGRHMRGSTSSQLGLVGIAERASALGGRSSFSEKDGVWMAQVTLPTPSCRAAQATGRDPHPGRPARPHRRRHRPRPTSCSPTDNNTDRNDNDRVEPVDVVDSSTSPA
>LR134350.1|VEG28608.1|1906002_1906215_+|Uncharacterised-protein
MKRLAVVSAIAMLALPVLVTAPASAATGLQTSPQESEISSSQTAAFGAVPTRFAPPCSYLTRVWCRFWLL

Crispr_ID: LR134350_11

• CRISPR_ID: LR134350_11
• CRISPR_location: 1939110-1939201
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134350_11

Consensus_repeat	Method
CGACCGCTCACCCAGCCGCCTGCGTGGGAC	CRISPRCasFinder

spacers of LR134350_11

>11.1|1939140|32|LR134350|CRISPRCasFinder
GGGGGACGCGGTTGGTCGCGGTGCGGTAGCCG

CRISPR arrays and Neighbor proteins around LR134350_11

CRISPR arrays

The CRISPR arrays of LR134350_11

>merge|LR134350|11|1939110-1939201|CRISPRCasFinder
CGACCGCTCACCCAGCCGCCTGCGTGGGACGGGGGACGCGGTTGGTCGCGGTGCGGTAGCCGCGACCGCTCACCGAGCCGCCTGCGTGGGAC

>LR134350|11|11|1939110-1939201|CRISPRCasFinder
CGACCGCTCACCCAGCCGCCTGCGTGGGAC	GGGGGACGCGGTTGGTCGCGGTGCGGTAGCCG
CGACCGCTCACCGAGCCGCCTGCGTGGGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG28654.1|1932074_1932890_+|Thiol-disulfide-oxidoreductase-D	unknown	unknown	gnl|CDD|239321
LR134350.1|VEG28664.1|1940989_1941832_-|GAD-like-domain	unknown	unknown	gnl|CDD|370173
LR134350.1|VEG28641.1|1926607_1927357_+|bifunctional-3-demethylubiquinone-9-3-methyltransferase/-2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl|CDD|379312
LR134350.1|VEG28648.1|1929375_1929804_+|camphor-resistance-protein-CrcB	unknown	unknown	gnl|CDD|223317
LR134350.1|VEG28678.1|1948916_1949387_-|Hydrogenase-transcriptional-regulatory-protein-hupR1	unknown	unknown	gnl|CDD|381126
LR134350.1|VEG28668.1|1943411_1944440_+|Ferric-enterobactin-transport-system-permease-protein-fepD	unknown	unknown	gnl|CDD|182464
LR134350.1|VEG28646.1|1928965_1929379_+|camphor-resistance-protein-CrcB	unknown	unknown	gnl|CDD|223317
LR134350.1|VEG28662.1|1939520_1940858_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|373962
LR134350.1|VEG28676.1|1947575_1948844_-|pheromone-autoinducer-2-transporter	unknown	unknown	gnl|CDD|223701
LR134350.1|VEG28674.1|1946534_1947440_+|Vibriobactin-utilization-protein-ViuB	unknown	unknown	gnl|CDD|99790
LR134350.1|VEG28658.1|1934269_1937578_+|Beta-galactosidase	unknown	unknown	gnl|CDD|236673
LR134350.1|VEG28644.1|1927500_1928976_+|Predicted-membrane-protein	unknown	unknown	gnl|CDD|370724
LR134350.1|VEG28666.1|1942362_1943415_+|Probable-siderophore-binding-lipoprotein-yfiY-precursor	unknown	unknown	gnl|CDD|238566
LR134350.1|VEG28672.1|1945533_1946538_+|Probable-siderophore-transport-system-ATP-binding-protein-YusV	unknown	unknown	gnl|CDD|224045
LR134350.1|VEG28670.1|1944436_1945537_+|Probable-siderophore-transport-system-permease-protein-yfhA	unknown	unknown	gnl|CDD|376439
LR134350.1|VEG28650.1|1929883_1930402_+|NfeD-like-C-terminal,-partner-binding	unknown	unknown	unknown
LR134350.1|VEG28680.1|1949383_1951405_-|Sensor-protein-ZraS	unknown	unknown	gnl|CDD|223715
LR134350.1|VEG28652.1|1930486_1931872_+|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl|CDD|259798
LR134350.1|VEG28660.1|1937619_1939056_+|Inner-membrane-symporter-yicJ	unknown	unknown	gnl|CDD|340890
LR134350.1|VEG28656.1|1932948_1933980_-|Lactose-operon-repressor	unknown	unknown	gnl|CDD|380488

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG28654.1|1932074_1932890_+|Thiol-disulfide-oxidoreductase-D	gnl|CDD|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	2.16644e-27
LR134350.1|VEG28664.1|1940989_1941832_-|GAD-like-domain	gnl|CDD|370173	pfam08887, GAD-like, GAD-like domain. This domain is functionally uncharacterized, but it appears to be distantly related to the GAD domain pfam02938.	2.93009e-30
LR134350.1|VEG28641.1|1926607_1927357_+|bifunctional-3-demethylubiquinone-9-3-methyltransferase/-2-octaprenyl-6-hydroxy-phenol-methylase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.28654e-10
LR134350.1|VEG28648.1|1929375_1929804_+|camphor-resistance-protein-CrcB	gnl|CDD|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	4.15772e-17
LR134350.1|VEG28678.1|1948916_1949387_-|Hydrogenase-transcriptional-regulatory-protein-hupR1	gnl|CDD|381126	cd17595, REC_TrxB, phosphoacceptor receiver (REC) domain a fused response regulator with a thioredoxin reductase output domain. This family is composed of uncharacterized fusion proteins containing a REC domain and a thioredoxin reductase domain. Thioredoxin reductase catalyzes the reduction of thioredoxin and is thus a central component in the thioredoxin system. Fusion proteins containing REC and thioredoxin reductase domains could play an important role in the environmental regulation of the cellular dithiol-disulfide ratio. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.51191e-23
LR134350.1|VEG28668.1|1943411_1944440_+|Ferric-enterobactin-transport-system-permease-protein-fepD	gnl|CDD|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	2.87777e-78
LR134350.1|VEG28646.1|1928965_1929379_+|camphor-resistance-protein-CrcB	gnl|CDD|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	8.4108e-22
LR134350.1|VEG28662.1|1939520_1940858_-|Uncharacterised-protein	gnl|CDD|373962	pfam15604, Ntox15, Novel toxin 15. A predicted RNase toxin found in bacterial polymorphic toxin systems. The toxin possesses a most all-alpha helical fold and a conserved HxxD motif. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 6, type 7 or Photorhabdus virulence cassette (PVC)-type secretion systems. This is shown to be a type IV secretion system protein that behaves as DNase.	1.38337e-14
LR134350.1|VEG28676.1|1947575_1948844_-|pheromone-autoinducer-2-transporter	gnl|CDD|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.91026e-51
LR134350.1|VEG28674.1|1946534_1947440_+|Vibriobactin-utilization-protein-ViuB	gnl|CDD|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.76397e-68
LR134350.1|VEG28658.1|1934269_1937578_+|Beta-galactosidase	gnl|CDD|236673	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed.	3.74601e-179
LR134350.1|VEG28644.1|1927500_1928976_+|Predicted-membrane-protein	gnl|CDD|370724	pfam09852, DUF2079, Predicted membrane protein (DUF2079). This domain, found in various hypothetical prokaryotic proteins, has no known function.	2.37417e-39
LR134350.1|VEG28666.1|1942362_1943415_+|Probable-siderophore-binding-lipoprotein-yfiY-precursor	gnl|CDD|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	7.57843e-47
LR134350.1|VEG28672.1|1945533_1946538_+|Probable-siderophore-transport-system-ATP-binding-protein-YusV	gnl|CDD|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	7.963e-132
LR134350.1|VEG28670.1|1944436_1945537_+|Probable-siderophore-transport-system-permease-protein-yfhA	gnl|CDD|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.30432e-62
LR134350.1|VEG28680.1|1949383_1951405_-|Sensor-protein-ZraS	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.88533e-27
LR134350.1|VEG28652.1|1930486_1931872_+|Uncharacterized-protein-conserved-in-bacteria	gnl|CDD|259798	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. The flotillin (reggie) like proteins are lipid raft-associated. Individual proteins of this SPFH family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. In addition, microdomains formed from flotillin proteins may be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and interact with a variety of proteins. They may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and in cancer invasion, and metastasis.	1.38464e-43
LR134350.1|VEG28660.1|1937619_1939056_+|Inner-membrane-symporter-yicJ	gnl|CDD|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.28512e-74
LR134350.1|VEG28656.1|1932948_1933980_-|Lactose-operon-repressor	gnl|CDD|380488	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.72421e-92

Protein sequences

>LR134350.1|VEG28660.1|1937619_1939056_+|Inner-membrane-symporter-yicJ
MNEKKYLRWYNKVGYGSGDVAGNVVYALLSAFTMIYLTDTAGLNAGVIGTLMMLSKFFDGFSDLVFGALLDKTQTRMGKARPWMLWAFVGCAAMIIAIFAIPTSLGDTAKYAWFFIAYTLLNAVFFTANNIAYSALTALITKNSSERVQMGSIRFMFAFGTSLVIQTVTVKGVELLGGGAEGWRAIAIIYALVGLAVNTLSVMSVRELSPAELAEAAEAADDEAGRAEGAAAPEKVTLRESGRLLLANRYYLIILVVFIMTQMFTATLNMGIYFMTYILGNANLLGGFAWAINIPLIVGLLFTPAVVARAGGMYRVNIVGYAVAVAGRLGVVAAGYMGNLWLMLFFSGVASLGMSPLQGTLNALIAEASEHTFLRSGKRIDGLMFSCTSLGVKIGSGLGTALAGWLLAASGYVANAPEQAGSVITMLYVMYLWIPAVANAIILALLWRLDVEKANARLRARALEADHGGDGAGSEAQA
>LR134350.1|VEG28658.1|1934269_1937578_+|Beta-galactosidase
MIVPRHYESLSVLHDNTLPARAYYVPASRPLTGGPSDREASDRLRLLSGTWGMRYSASIHDVLEQVREEDLVPGADLPGLEPVTVPGTWQHQGHDAHQYTNVRYPIPLDPPHVPHDNPAALYVKDFDHRPDPRAPRATLTFEGVDSCFYVWLNGSYVGYSQVSHATAEFDVTDLLRAGGNLLAVLVLKWCDGTYLEDQDKFRTSGIIRDVYLLVRPEAVLVDYTTTTELGDEGARVTVRGSFVGGPVPVGLELRDAEGRTVATGALAPLEPTGAGATREGTGDERAEATAGDAGADPADPANPAVPADPADPANPANLTVPADLADPADLADPADPANPAASAAPGPVHTHGAVLAVDHPHLWSAENPYLYTLVLTCPEEVITDRVGLREVRTEGAVLVLNGSPVTLRGVNRHDSDPVTGPVVDLEHMLRDLRLMKEHNVNALRTAHYPAQPQLYQLCDEYGFYVMSEADNESHGTQAQYLADESWDNVVEQWSPRIADNPEWTEATVDRVRLCVEREKNRPCVISWSAGNECAYGTTLEAALRWVKEADPTRVTHYESAYYRRSGRRDDYSCIDLYSRMYPALAEVRDYLASDPDKPFLLVEYCHAMGNGPGDLEDYWRLVRSDARLCGGFVWEWCDHAVRAGTTPEGRPVHLYGGDHGEAVHDSNFCVDGLVSPDRVPHPGARELWNVHRPVRLEDLDLEAGTVTIRNETDFTDLRDLVEIVSEVTCDGRVVSRARLPLERPVPPGTTAILPVNLSRPEHGRCHLLVSYRLASPRPLLSAGHELGFDEVALPTADPRHHEAARIIDAPVRGAVPRVEDSGRTITVRGERWTYRFDTRTGMPQELEVGGRRLLTRPMEVNTWRAPTDNDRDLRRRWERAGYDRAALSARGCAVSCSDTEVRISAEAVLAAAAVQPFLTLALRWTIRPDGVLGLRMDAMRDTAFPELPRLGLRLFLPPAVDRVVYDGLGPSESYVDKHRACRHGRFTAAVDELHEGYIRPQENGSRADCTYVLLSGGGMSLTAVGAAPLSFNASRYTQEQLTATAHDAELVPSGHTVLCLDAAMAGIGSASCGPELSPEYRVDDAELHLDLWLEPSCAPQHP
>LR134350.1|VEG28656.1|1932948_1933980_-|Lactose-operon-repressor
MGARGGARAGAASIGDVARLAGVSAQTVSRVSRGADNVRPDTRDKVLRAMDQLGYAPNRAARALRSGSFNVIGVLTQQIQRTGEAYTTSGVLEAAARAGYSVSLAQVEHPESQEVRDAVFRLQHQAIDGLVIVQSGRAGPEHLMLPAGLPVASSDSALVGHYPSASADQVQGVRDAVDHLLGLGHRTVHHVTGPRDSQSAVVRAAAWSRRLEESGIPVPAPVTGGWEARDGYEAGLRLAADPEVTAVFCANDEVALGLVRALHEAGRRVPEDVSVVGFDGLPLAEYTFPPLTTVRQDFQRAGAEMVRLVLEQAAGAVIDRGYQLVIPTELVVHASTAPPPPGS
>LR134350.1|VEG28654.1|1932074_1932890_+|Thiol-disulfide-oxidoreductase-D
MSVDSPAPVRQGNPLVVALLVVIAILLAVIAGILVTRDDRSAPAQTAATVSTDPSAAAATDPGAAASAAPTDPATSEPSQTDPAVLEILHAEVSRDPEDPRAQGAVDAPVVMVLYSDFSCPYCTQLAQEVEPELADLVEAGTLRIEWRDLAQVSATSPLAAQAGIAAANQGMFWEFHDAVYAAADPTGHPEYTEESLIELARAAGVPDIEQFTADMNDPATVQAVTEATQHAQQIGIDGTPFMIINDAYIPGYQPAEYVRATIEEQAAAAQ
>LR134350.1|VEG28652.1|1930486_1931872_+|Uncharacterized-protein-conserved-in-bacteria
MLIIAIVSVAVLVLLIGIYMLTRVVVVPSNMTGLISGSARNGEVKIIRPGGRDFVLPIIQSIQYLPFTQNTIGFKVRAEDENKINVNVSAVAAVKVGDSDEQVRAAAKRFLGKPNTDQAIADSARDALIGSLRSIIGHMTVTDLISDRDALQKNVFDDAKSVMANMGLEIDVLQISEITDDGGYIESLGVPELQRVEKDARIARANAEREAKDAEVTSRQQIAERERDLSLRQAQLKSETDKAQAEADSAGPLARAAKEREIAVIEQEAAEAKAVLTERELDSSVRRPADAARYQREQEAEAAKVEAIRKAEAEAERTRLDAEAQAAATVARAEAEARATAARAKAEAEAIAARGRAEAEAVRAAGEAEAKSMSDKADALAKYGQAATQQMVLDKAPEIARALAEPLAGIKDMSIISTEGASALPKAVAGNVEQLDAVMRSLTGSGLTDMVSRFTGTDTKA
>LR134350.1|VEG28650.1|1929883_1930402_+|NfeD-like-C-terminal,-partner-binding
MSPFLWCAVIGCGLLVLSLVLDGLLDGLDELLFEGALPVIACVIGVFGGVGLAVEALAGGSAPAVIALGVPVVGALASGVLTRRVWTRLRRSMPRNTVPMTPAELIGTEVRVLWWKDGRGEVAAVARGQQATLPARCDDPLRTGAVAWVTDTDDAVLILTDVAATDDTTSRS
>LR134350.1|VEG28648.1|1929375_1929804_+|camphor-resistance-protein-CrcB
MSPLAWLVLALAGGLGAMARFTVDSRVNAALRPRDGASDRHRVRPSLGTVVVNLSACLALGILSGAAAGAPQWVHAVVGTGFLGGYSTFSTACLEGARLWLDGRGAAGLVHGLAMTGGTLTAAALGVAAGSALPAVLGASAG
>LR134350.1|VEG28646.1|1928965_1929379_+|camphor-resistance-protein-CrcB
MSSSRRTSLAAVGAGGALGTLLRAAAEAAWPTPPGHLPVTTLVINLAGALCLGLLTGAWAVGQGRGSTLRLALGTGVMGGLTTHSTYVLEAHGLLTGGSPALGAAYLLGSLAAGLLASALGLLLGGSLRGRHHREGT
>LR134350.1|VEG28644.1|1927500_1928976_+|Predicted-membrane-protein
MKSRLLPGPMKSPLPLVLPAVPVVIGAWILVVYSVGQWRAMTVPSWDLAIFSELAKAYSRLEAPIVPIKGDGYNLLGDHFHPILVLLGPVWRLFPSPLALLIVQDLLIAVSAWPITRLAVRLLGGPAGTVLGLFYVLAWGFQGAVAAQFHEIAFAVPMLAWGSVAFVESRWRACVLWIAPLVLVKEDLGLTVFMAGLAIALRGWQDSPGGEPQPGRTSLSRPVVIGLGLAAFGAAAFALTVGVILPALSPTGTWEYGLSGDGAAGGNLLARLLTPSVKIATLAMVACTAGLIGLASPWAGLVLPTLAWRLASSKEFYWDWQYWHYNAILIPVAVGALLDVVARLKGRSSTGTWMGAPVRYRWAVALAVAVPLATGAATASQLPLWDMTVKGYGSTSSRAAAAEQIIDLIPEGSTVETDLTLLAYLVPTTTVSWVGTSSTDTDYVVVDSLSSAWGGNPPSDAAQWATDGSTQGARYELVLDVDGFQVAKRVE
>LR134350.1|VEG28641.1|1926607_1927357_+|bifunctional-3-demethylubiquinone-9-3-methyltransferase/-2-octaprenyl-6-hydroxy-phenol-methylase
MHPVDASADATPAPLHTGLGARRYHRLSLRDESEVATIVEILAFPSRPELLDKRVLELSCGWGRLTLPMAAAGHRVLATDVDSDALADLAEHLVPQDQASTSVELRLTSLTSFSFDETFKAVCLPTGVTTRLDRTERRSVMEAAVSHLAPGGVLIVSTDYVLESAPTTMCLALGPHTTLTEQILPETGLRRTTLSWEDELYSSDLHIVPPTWVSRTCTQLGLTVTYQRSKPDPLLTGRVNAVIAAVKNP
>LR134350.1|VEG28662.1|1939520_1940858_-|Uncharacterised-protein
MFTFGRAGGQRVLVWEGGAAAPASSLAWHSPTPVEVFFHTGGNPGLRALSGEFTRQLDRQLSALSLLSAQRLLEGIRAYRAQGRAPASKTVKDARQKFIDKVAKDLTDIHGFSRSRAREAVGLVDKALVVLHESDQVTYGPGDPVLIGGLPSMGLDRVNSSIGSQNKSVADVLERAVLAIPVERRAGCRLRLRAVLTASRSLARNLRHARVVLEARSAEQVFGLSARAPPWTPATIAADVAAAHHQAAIPASTPATDPGPGAPPGAGRITPHELLNAITARAGGRTPATPGPQTPPPPAPAPTIPTGATTPTTPTGATAPTIPSGVTVASGDPTTPTGATTPTTPTGATAPTTPTGATAPTTPTTPTTPTGATVASGAGGPGPVRAATFPAPASAPVQAPAHGTGAASARTPRQVKAAITARAAAAGQDRAPAPPAHRKSPGLDR
>LR134350.1|VEG28664.1|1940989_1941832_-|GAD-like-domain
MQEDLLDYEGWTPMGVGRAVSAEHLERFSGVFPESVLYVWRRFGFDGFGQGRFWITDPWEWEPVVEAWLEGMALPFPPQRWWCLARTAMGGMSLWGEVSGPALEITPVLGILYPDAARASRMADPVLRERMGCSVFTSPTKDSLDDDDTGRPIVDGVIERLGAVGPDQVVGFVPAYCLTGVMTVGSASLEEAVPHLVFLAQAQDKTLWEDFSAAAAQAAAAIAIQHPDPSTGPGPEPEAGPVPGSEPGPGPDAGPEPGPGPAPEPGSGVDGSGAGGSPRL
>LR134350.1|VEG28666.1|1942362_1943415_+|Probable-siderophore-binding-lipoprotein-yfiY-precursor
MSVSRKSFLLTSLLVPAGLAVSACGSSSGSSGSGGGSATAGGDTGSLSVTHAFGTTEVPAVVERIACVNWGNHDVPLALGVMPVGMAKQTWGVEDDSGMLPWTKEKVDELVADGAQAPELFDETDAIAFEAVAATTPDVILAAYSGLTQEDYDTLSKIAPTIAYPTVAWGTPWREMITMDATGMRRTADGETLVSELDALITESLTDYPQLSGKTAAFFYLDPTDTSSIGFYTTADPRTAFLSDLGMTVPPSVQTASDADPDTFYVTVASENADTLSDVDLMVCYGQADTLATLQADPRLGTVPAIKNGAVAMVGDNNPLAASTNPGPLSLPWGLAQYLELLGAAADKVQ
>LR134350.1|VEG28668.1|1943411_1944440_+|Ferric-enterobactin-transport-system-permease-protein-fepD
MSRSDGHARRRGPVPRGPLALVVLLGLVLLAAACSVAFGARVVGIEEILRGLAGGAQDLGAISVAERVPRTATALVGGAALGLAGALMQAVTRNPIADPGILGINTGASLAIVIGIAFAGISTTPQYIAVALAGAALTAVLVHAVGSAGSGGTTPVKLALAGVATTAALSSLVSAIALPRAAGLEDFRFWQVGSTGRGTWEALGTVGPLLAVAGLVALNLARPLNSLALGDEMAVGLGVAVSRTRLLASGAGVVLCAATTALAGPIGFVGLMVPHAVRMLVGPDHRWLLPLSALGGAALLAFADVLGRVIARPAEVSVGVVTAFVGAPVLILIARGAKVREL
>LR134350.1|VEG28670.1|1944436_1945537_+|Probable-siderophore-transport-system-permease-protein-yfhA
MSAIVGPGRMSTTLSADGARTGGDPAPGFTTAGRRRRTLRRVAVVGGLILLVAALWWATVLLGQTRYSVAEALRVMAGQTVPGASFVVGELRLPRALVGLLAGLAFGMAGTTSQTMLRNQLASPDIIGITSGASASAVFAILVLGWSGTPVTALAVLAGVATAAVIYLLSGSGRAQGGRLILIGIGVSSMFSSIIAYLQMRASVYDVADAMRWLSGSLGSASWEQVPLLTASLIVLGALLALAGRGLGPMVLGEETATGLGVNVPRTRAVLVLAMVGLSAVATAATGPIAFVSFLAGPVAGRLVGPTDRSLLVPAGLMGAAIVLGADLLSQQVLPTALPVGVVTGIVGAPALLVQLLRVNRQGASA
>LR134350.1|VEG28672.1|1945533_1946538_+|Probable-siderophore-transport-system-ATP-binding-protein-YusV
MSATVPAVPRGTEPAAGRTAGRTAATAADSAVPRRLSTAELSSGYGRRTVVDGVDLAVPTGRITVIVGANACGKSTLLKTMARILAPSSGAVLLDGEPVGSIPTRRLATRLGLLAQQPVAPEGIAVSDLVGRGRHPHQGAFRSWTAEDRRVVEEALVATGTATLADRAVDELSGGQRQRVWIAMALAQRTDVLLLDEPTTFLDLAHQVEVLDLLTDLNRDRGTTIVMVLHDINLAARYADHVVAMKAGRVVAAGPPAEVVDPTLVREVFGLEAEVITDPVSGTPLIVPRGRYHDAAGRGGRPARTRDRGGADSPAVAPPGRGRDAEPGGSQERS
>LR134350.1|VEG28674.1|1946534_1947440_+|Vibriobactin-utilization-protein-ViuB
MSEPFRFFHVHVARVVDLTPSFRRVTFTGEDLDHFADPGWDQRIKLVLPAPRSGYRHLPEGGSWYSRWLSLEEQDRPPIRTYTTRAVRRGPTGTEVDVDVVLHGPTGPAGRWVEAARPGSRAVLLGPDTGFEGVPGGVDFVPPEITERLLLGGDETAAPAISRILEDLSPTARGIAVVEVPVEADTPYLSSHPGIELRVLARNGGGHGDQLVAEVARAVAELCPTGTPQEVEEIDVDHDLLWEVPRTAKGGAALKRTSLYAWLAGEAGAVRTMRRHLVAERGLDRRAVAFMGYWRRGRAEG
>LR134350.1|VEG28676.1|1947575_1948844_-|pheromone-autoinducer-2-transporter
MSQSPQTVPARPDSPGGRGGPRSQGESIAMVVAALVVGCAGIYFTRSLIGPAFFALTLVITVRPLISWASRHGVPRPVSAVAAILLIYTFVAIMFTALGVAIVQLIDTLPRYSDKFEAIWTNIQDLLDRFGVDQSTLLNQVAGAMDTSRVVSLAQSLLGQISGIGSVLSVMALAVVFLMFDMSRIEVRASALASIKPGIASALADFASSVRSYWLVSTVFGLIVAVLDVVALGILGVPMAVTWGVLSFITNYIPNIGFFIGVIPPALLALVDSGPWTALWVIVAYVVLNFVIQSLIQPKFTGDAVGLNTTTTFLSLLFWSQIIGALGAILAVPLTLFVKCVLIDSDERSRWVGIFLSAGDSPVRDPDEVDPSVIDELDLDGDGVGAADPEHGTPVVEGGEDRGAEGEGGEDRGVEDRGAPRA
>LR134350.1|VEG28678.1|1948916_1949387_-|Hydrogenase-transcriptional-regulatory-protein-hupR1
MKLVILVVEDEPEVRDAVVGDLAPFSGVVRVEPAEDVEDAWEVVSEVVADGDVIALVLADHRLPGRSGVDMLVEMREEESTAAARKVLVTGQADQADTIRAVNEAGLDHYIAKPWDPARLQATVRTQLTDFVLDAGINPLPHLRALDGVRAMEALR
>LR134350.1|VEG28680.1|1949383_1951405_-|Sensor-protein-ZraS
MTAEPANEPAPEPANEPAPERLAVAVVSPASLGSQAAHEIGPAVAAVADVVRLRSLAELLARAAGAGDAPLPTVPLIVATDEVGSLDDVAAAVDRYPSLATARLVLLTERTELSNLGRAIDEDLVREVVAVPWTPGAIADRAAAQTRRWMRDHRPQDERSHELGVDHGAPDPGRSPLLEALGHSADVLTAELIAACEAVLGPRPRLRLPPGVRLTHQGQIVDSVCIVVSGAVALTRHTRVGEVVLHHATTGRVIGLVSLAGHGRAYVTATTTTEVELILLSIEQLDRSLRENPATEQTLAALLIGSLTTRLSRSEVLQVEKTELAAAVAAEKAQAQEALEALEQARLELLAQERFATLGELAAGVAHELNNPVAALERAGAHLSEDIASILLTHPDGPAIRAAAEAARTRPAASTRTERAARRSLEAVLGDRETARRLVALGYGPDSDPAEVRALAADPLRLRTTEAAASIGRGERNIGLATARISGLVAALSTYVRPEGEQPVDVDPREVLEDALRLTAHRLRGVEIERDYAEVPRIPARGGELAQVWTNILANAADALAAQAKAAADAGQEPPHARVVLRATPAPEAVRIQVEDNGPGIPDDVLPRIFEPRFTTKHGQVRFGLGLGMGLAKSVVDAHGGTISVDSRPGRTCVTVDLPTHPALTAPTPQEAP

Crispr_ID: LR134350_12

• CRISPR_ID: LR134350_12
• CRISPR_location: 2127762-2127920
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of LR134350_12

Consensus_repeat	Method
GGCCGGGGGCTGGCCGGGGGCTGGCCG	CRISPRCasFinder

spacers of LR134350_12

>12.1|2127789|17|LR134350|CRISPRCasFinder
TGAGTCGACTGCGGATC
>12.2|2127833|17|LR134350|CRISPRCasFinder
GGGGCTGGCCGGGGGCT
>12.3|2127877|17|LR134350|CRISPRCasFinder
AGGGCTGGCCGGGGGCT

CRISPR arrays and Neighbor proteins around LR134350_12

CRISPR arrays

The CRISPR arrays of LR134350_12

>merge|LR134350|12|2127762-2127920|CRISPRCasFinder
GGCCGCGGACCGATCGCGGGCTGGTCGTGAGTCGACTGCGGATCGGCCGAGGGTCGGCCGTGGGTCGGCCGGGGGCTGGCCGGGGGCTGGCCGGGGGCTGGCCGGGGGCTGGCCGAGGGCTGGCCGGGGGCTGGCCGAGGGCTGGCCGCGAGACGGTCA

>LR134350|12|12|2127762-2127920|CRISPRCasFinder
GGCCGCGGACCGATCGCGGGCTGGTCG	TGAGTCGACTGCGGATC
GGCCGAGGGTCGGCCGTGGGTCGGCCG	GGGGCTGGCCGGGGGCT
GGCCGGGGGCTGGCCGGGGGCTGGCCG	AGGGCTGGCCGGGGGCT
GGCCGAGGGCTGGCCGCGAGACGGTCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG28952.1|2124653_2125517_-|Hemin-import-ATP-binding-protein-HmuV	unknown	unknown	gnl|CDD|224045
LR134350.1|VEG28940.1|2119534_2119999_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28938.1|2118067_2119483_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|379450
LR134350.1|VEG28958.1|2128047_2129880_+|Energy-coupling-factor-transporter-ATP-binding-protein-EcfA1	unknown	unknown	gnl|CDD|227321
LR134350.1|VEG28972.1|2138038_2138746_+|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl|CDD|378023
LR134350.1|VEG28944.1|2121023_2122952_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28948.1|2123177_2123507_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28968.1|2136010_2137318_+|Aminobenzoyl-glutamate-utilization-protein-B	unknown	unknown	gnl|CDD|349921
LR134350.1|VEG28964.1|2132106_2134410_+|bacteriocin-biosynthesis-docking-scaffold,-SagD-family	unknown	unknown	gnl|CDD|274674
LR134350.1|VEG28962.1|2131797_2131908_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28960.1|2129876_2131793_+|Probable-ABC-transporter-ATP-binding-protein-HI_0664	unknown	unknown	gnl|CDD|224055
LR134350.1|VEG28954.1|2125513_2126503_-|corrinoid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|238568
LR134350.1|VEG28970.1|2137494_2137794_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28942.1|2120367_2120616_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28974.1|2138745_2139549_+|Flp-pilus-assembly-protein,-ATPase-CpaE	unknown	unknown	unknown
LR134350.1|VEG28966.1|2134406_2135834_+|bacteriocin-biosynthesis-docking-scaffold,-SagD-family	unknown	unknown	gnl|CDD|274674
LR134350.1|VEG28976.1|2139545_2140862_+|Type-IV-secretion-system-protein-virB11	unknown	unknown	gnl|CDD|227297
LR134350.1|VEG28956.1|2126579_2127584_-|Probable-ABC-transporter-permease-protein-HI_1471	unknown	unknown	gnl|CDD|376439
LR134350.1|VEG28946.1|2122992_2123139_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG28950.1|2123757_2124567_+|Uncharacterised-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG28960.1|2129876_2131793_+|Probable-ABC-transporter-ATP-binding-protein-HI_0664	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	7.24131e-98
LR134350.1|VEG28964.1|2132106_2134410_+|bacteriocin-biosynthesis-docking-scaffold,-SagD-family	gnl|CDD|274674	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component. Members of this protein family include enzymes related to SagD, previously referred to as a scaffold or docking protein involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). Newer evidence describes an enzymatic activity, an ATP-dependent cyclodehydration reaction, previously ascribed to the SagC component. This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins.	1.90231e-62
LR134350.1|VEG28954.1|2125513_2126503_-|corrinoid-ABC-transporter-substrate-binding-protein	gnl|CDD|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.49727e-36
LR134350.1|VEG28938.1|2118067_2119483_+|Uncharacterised-protein	gnl|CDD|379450	pfam14067, LssY_C, LssY C-terminus. This domain is found at the C-terminus of Legionella LssY proteins, which may be a part of the type I secretion system. This domain is functionally uncharacterized. This domain is found in bacteria, and is typically between 182 and 195 amino acids in length. It is often found in association with pfam09335 and PF01569. There are two completely conserved residues (P and W) that may be functionally important.	5.08015e-87
LR134350.1|VEG28958.1|2128047_2129880_+|Energy-coupling-factor-transporter-ATP-binding-protein-EcfA1	gnl|CDD|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	1.09775e-91
LR134350.1|VEG28968.1|2136010_2137318_+|Aminobenzoyl-glutamate-utilization-protein-B	gnl|CDD|349921	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. This subfamily includes Staphylococcus aureus antibiotic resistance factor HmrA that has been shown to participate in methicillin resistance mechanisms in vivo in the presence of beta-lactams. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	7.77851e-134
LR134350.1|VEG28972.1|2138038_2138746_+|Flp-pilus-assembly-protein-CpaB	gnl|CDD|378023	pfam08666, SAF, SAF domain. This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.	1.83452e-08
LR134350.1|VEG28966.1|2134406_2135834_+|bacteriocin-biosynthesis-docking-scaffold,-SagD-family	gnl|CDD|274674	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component. Members of this protein family include enzymes related to SagD, previously referred to as a scaffold or docking protein involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). Newer evidence describes an enzymatic activity, an ATP-dependent cyclodehydration reaction, previously ascribed to the SagC component. This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins.	3.2482e-07
LR134350.1|VEG28976.1|2139545_2140862_+|Type-IV-secretion-system-protein-virB11	gnl|CDD|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	1.13054e-77
LR134350.1|VEG28956.1|2126579_2127584_-|Probable-ABC-transporter-permease-protein-HI_1471	gnl|CDD|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.4725e-78
LR134350.1|VEG28952.1|2124653_2125517_-|Hemin-import-ATP-binding-protein-HmuV	gnl|CDD|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	5.69077e-79

Protein sequences

>LR134350.1|VEG28956.1|2126579_2127584_-|Probable-ABC-transporter-permease-protein-HI_1471
MLSLVAVGVGQVHASPGQVVDVLLRPGGAPGGAGSSSTLETVVWQLRAPRVLAGLCVGAVLACSGAALQAVVRNDLADPYLLGISSGACLGAALVIAGGAGGVVGAVVGAGSRAEGPTVTLGAFLGALAALTLVLVLVGPGRSLSGSRLVLAGLTVGYFLSAATNLVVVLSDSRDAVRAVTFWMLGSLGRSSWADVPALAAVTLGSVGALTLRGRSLDAVGLGDDVARSLGVDPDRQRRTTAVLAALGVAAATAVAGAIGFVGLVVPHLARRLVGATHRALIPTSALLGALVLTGADALARTVLAPREIPLGILTALVGTPLLMSMLRRRSHGS
>LR134350.1|VEG28954.1|2125513_2126503_-|corrinoid-ABC-transporter-substrate-binding-protein
MTLTPLTPTTSMRPVALLGAAALALGLTACSPGREPGTATSGYPVSVQDCGGDVTVPDQPSRILTVGTAAVELLDAAGASDRITARSGEFGAPLPEGLSHPPSDSLIINPADPTTEEILAADPDMVLGYGLFQADAEQLRAAGITVLTVLGECRHDATTQAGTPATLATVPQDLRRLGTALATTPHAEASAQDLEERVSAASRPSTGQSAAWVYYFSSEDALSAYGGSGLPASVLEGAGLGNVYAEDKDAYLTISVESLLERQPHWIVLSYGLYGESQEEARARLLAEPGVQSLTAVAEGRVVLLPADASVPGPSAISGLEDLVGATQE
>LR134350.1|VEG28952.1|2124653_2125517_-|Hemin-import-ATP-binding-protein-HmuV
MRRRLLASHRTEGAVAVGRCGDLAGTTSCDRAACTPVALEADGVHLRRGRVVALGAVSLHVSPGETVGVVGPNGSGKSSLLRVMGGLTAPSRGRALVAGQDLRTMADRERARLVASVSQEEHTELPFTAREVLLLARAAGLSGWRPYRDEDHAAVEGLAADWELTGLLERSLCEMSGGERKRVLLARAFAQRSGAVILDEPTNHLDLRHQHGLLARLADSPVTALLALHDLDLAAAYCDRVVLMERGRVVSQGRPEEVLTARSVELVYGVPARRADVEGRVRLLVGR
>LR134350.1|VEG28950.1|2123757_2124567_+|Uncharacterised-protein
MSEHTGRHAAQRRGRHAAASEQVRFGVPFNGVVPLWHAGAEITWHRPVDGTDLSEVLGLGLVESEPGPSEAPPGWGEVVEVGTLIEAESGPVLRLRSSSPAGRRAVNDPADGVPIPLSRPLSIEEAMSGQFDITGFSVHIARLMLRAARDSAILLFTLRAPRDPDPHHLLSVPAEADAEGIMHFHLGTLLDMTTESWRGAARADRMTLLDLDVSYMSLLVGRPEDQEGLDVDRLVEMAQPVVDCILKPGFPFALGYSVVLPDAVAPAPR
>LR134350.1|VEG28948.1|2123177_2123507_-|Uncharacterised-protein
MTDVDNPKLLAIQAIKTQATTSASSVSSWTPASAPGSAQTTSIDAGLTDEVWTSPVADDYRSKISIASSSCNTAMSAVVSALTSAENEIYDAGLDRVPADSPEARWPDS
>LR134350.1|VEG28946.1|2122992_2123139_-|Uncharacterised-protein
MTFIQINLDKMLSVINNLDERAAIVDDERRKIDDESSHNQSRPRRVRG
>LR134350.1|VEG28944.1|2121023_2122952_-|Uncharacterised-protein
MSLAWCANLHTCAEGLRSLADELRVRRQEAIDLNSNGITTNPSGGVATYYLPDPPPDVTDVDAYWARTDTVANVQAYNSQSVATAKSEAAELEEALANGRSSRGRTPEEIIEQINKHRDIPTYGLAFCMTMGVDTMLDAPLNAQADTNYAHEEQPAIIPTMIDTFGHLMCAASSLSEPSSYPVASSPDSAHQYSLAGSIYEAVTEEGHEGRATVLDAYMTADGTVYDTDFLVGLGGYMEGIEEWPDEPRGVTWTTNSGNDDYGARYLPGHSTDPLAAALNAMGNNPEAANAYLAPPDEDYSPLIDNEGGDDYWRPSDLAQQRMEMLASREWTPQSLEGLSAAFAAVSANRAPAPGNDTDDRAAWATGQGILMLAEQDLPNGTVDENIGIMLGNCGPEVVGIANRSGIVPDDYEVYQTSSVATGADGESIEAALAHLLWEASDSAQANHYIVRGTTVYTAARASAAVQADTSGNPLAAIKVTYDDQASVLDLISALSQDRADDGYNGAMAAAGLLSAVPGAGLLGTGVSTALTLQGSPQVDATGHDESSALRGAAYTNAFESGLINNPPDPATTSWYSVGPDGRVTISLDTEDQLEDFNGWILAGAGGSPTVKSTFNEIGVDDPAARWESADDFKKQYGGASW
>LR134350.1|VEG28942.1|2120367_2120616_-|Uncharacterised-protein
MVGDRDSTLAYAANYSFTESGPRTLSLGVITGLTTPEPSLSDAEIRETTIALFTYLVETVEEHYPTTAQPTPPSTTASAQES
>LR134350.1|VEG28940.1|2119534_2119999_-|Uncharacterised-protein
MEHSPGNNESSFDTPNLSCGLRLDGLGDIRVTYTRDPWFLTRSNTIVDEERFLSFPSDYGWTLESLNLAREGTTYLSVVDDKSTVRAYAAWYAAGPRTLSLGVFDQPTVFNSPLSDAEIRGTTIALFTYLVETVEERYPATAQPTPPLATASAR
>LR134350.1|VEG28938.1|2118067_2119483_+|Uncharacterised-protein
MAPMTADPPRPRPTAPPVYSRGSAKVGEVEARTWGVDDIADALFFAVSALLTLWLAWVLLGSGWHLQPRAVVFSILFWAVLAYLALPRLHQVLTWLYVPDYFIGRTRTPDGLLGDPVNLAVQGHEEDIHEAMTSAGWVRADPISLRSSWGIIVSSLLRRSYPAAPVSTLQLFGRGQDFAYQKEVAGNPAQRHHIRFWHTPDGWVLPGGRRVDWLAAATYDRSVGLSALTLQVTHKIDADIDVERNYVVDDVLWANPAAALETWNDFFTSYHDKNGGGDRVVTDGDLYVLDVHDVVPGPQEDLLRARRMDAQAGRRRPAALVVSLVLLGMLTVVNIVEAITSKTVRSTATDPEIAAEPYGTEILYGIVAATTTIAALAIVGLAVAVWHGHPRSRIVLMGVLTLSVFADMSQVAALGVRQTTTGLIISSALGVLALLAISARPCHQWERSRKEERQRRREERDRPPQTRAPGA
>LR134350.1|VEG28958.1|2128047_2129880_+|Energy-coupling-factor-transporter-ATP-binding-protein-EcfA1
MQHLRLMRLWHGHRVLLVLLTLTGLGVAATWIGQALLTSRVFTLLVAGAGERELVPAVLALAAVLLARPVLVLVRQLLAQHAMTRVKSSVRARALTAFVRRSAVDPAVSRSGRDHAVVVDGVENLDVYLSGYLPQVGVTVLVVAAVGSVMIVVDPVVGAVAVGSTLLLQCLPRLWDRALAARGAGHWDAYQELHAEFVDSMEAMTTLVAFGADRRREAQLARASSNLLARTLGQLRLSLVESGLSGFALAAVPALVLTAVVVRGRELGAFEVFVLVLLSVELVRPLRDLASLWHAGYLGTFSGPRVLDLLDAEPAQPAVSPARSRASGNGLDGTGGGGTGPGQVGVPAGPRVLVRGLTARYPGAPAPALVDVDLELGPGLTAVVGATGSGKSTLAAVLSGLLPPERGRVEIEGGAGDLGQCVRRISLVPQDPVLLGATVGQDIALGLPRDPEARSGPQEDELLARAARTVGIGLDETEDTVTLATPVGDAGARLSGGQRQRVAVARALAQQREVLVLDEATSALDPAAESRLVEALRRQAGRTLVAITHRLDLALRAERVVVLDGGRVAEQGPPEVLLASDGALSALVAAEGSPTAPGSRAPAGSEEDAR
>LR134350.1|VEG28960.1|2129876_2131793_+|Probable-ABC-transporter-ATP-binding-protein-HI_0664
MTGDAVASPRQAHSGTEAPGIVGLLGPILAMSRHLRGHRRLFLTVVLTVWAGLILSVTTVMLSVAAASALASSPSGDGADEAARTAAALCAGVTVLGLLAWFEQWFAHVLAYRVIDTIRLRVHRAIARLAPLGLAHRRSGETVAAAMTDVESLEWFYAHTAAQVLAGCAACVTVAGACLAWLGPEALIVPAAQALVVAVPVLLLPRAARQGARLRAAVAELSAHALAARAHARETVLLDRLGAVSQETHALTRRVQEARRALAVRAGTEQALIEVLSVGVVLLMLRVATDSASRGGLAPGAVPVVVALAGMSLVPATAVTGALGRLGETSAAARRVDELITTPGLRPTAPESPGPGAQVSTGSATGRQEASLRVNGLRVRYPGASRPVLDGLDLEVRPGETLAVVGASGEGKTTLALCLARLVAPEAGRIVLGGVDVAQEDPERTRERLVLVTQHTDVLRASVRDNLLCPEAPDDQVWQALTRARLADRVRALPEGLDTVLAERGAAWSGGERQRLGLARGLLRDPEVLVLDEPTAGLDARTENEFLQALAEGRRGRTTVVVTHRRAVMRACDRVVVVEAGAVVAAGDHAHLLRTSSAYRAVLDEAQEAPDAPAPGGEPVRGQVPAEPTADAEKHERR
>LR134350.1|VEG28962.1|2131797_2131908_+|Uncharacterised-protein
MPEITIVTVEDKRAEEAVLAPNSHHHGHVATSFSWS
>LR134350.1|VEG28964.1|2132106_2134410_+|bacteriocin-biosynthesis-docking-scaffold,-SagD-family
MTSSCPPAPRPTPECGDRPAPLVRSLLPPVTGIEIRPLEPGRCVLSVGENHHVADLPAQVAELAVAAWTLGRDDLVAPDAAKALAPLRRLLSEQAGRCPAGVPRGPAPVPRPGLRVVLSGERGMVEALERRSHPQDSVEVVAWSGARAVVNRAFALRRLLMVAVRGAREADLVDVDRMCHDMRVPWLPVELVRARMWVGPLVTPGVGASYEDAACRRLAAAREPRVHRVLRTPPAGGDQGPAPEELWPVLDVVLDLAAQACSALADADQELAPGDLLHELALSAAAPWPDAPSGAGQETPAVEHLRHPVLPVAHRRTRHRHHVPEDLLDERTGLVLRVREVRHDRRVPAALVTRQADVGDIRAVSPWANNILCQGSSFGDPRAARDAALGESVERYCGNVLDTLPVTWASYRELRRRGVPALDPRELVLYSRAQYEAPGFPFVPLTRGLRVHWVPGRRLGDGSEVLVPASMVYVNWFSAGFAAAPPTNFCAFAGIAAGPDEDFAVAGALEEIIERHATMVWWLNAHPLAEVSGLAAPALDPPLRVAYLSLDNEFGVPVAAAVVHDDEAGLVNIGFSARPRLADAASKALTEALTLQEGSRDLLRADGRHWKVMADGELNGRAFKPWRADRRYLDDFRADMHDCDDLMVQQQVYLDPRAAARMSHLLEPGLRRPPAQDPQDGDRSAERYRRALERQGVDAIVVDITTSDVASTGMRVVRVIAPGTVGNAPAAFPFLGRRRVQDIAVELGWRSTPLEEDELNYFPMPHA
>LR134350.1|VEG28966.1|2134406_2135834_+|bacteriocin-biosynthesis-docking-scaffold,-SagD-family
MSGEALRGLRAVRLRHGPPLPAGFRHLQVEMPPAPGVDRQAVVVDLARAEDHRLVLAAVARHWWSADHGQLDTCTASAAELDAQGQAFLDVGRLGLVDPALLTEPGCPLRPPDPGRRHTWVRAERLGAAPTRGWVPYSLALPLSYETRPGEPRTHPPLLAGLGAGTGVCQATARAWEALRVEDALWLWWSDPWRTPPEPVEPDPEAARLWEAEGLEVRLAALPDSLGGKVALALVDDGRVAAVGGGPGTGRRGQREAVARALWQLVVARALSDPHDALHRTSAHALVPFRPEGDYLRCAGPRRRRLLDPLGHVQLLLDPVVREEVLRRAEPRSAAGRPSTAAQARRAVGAGGQGAAAGRPGEAGPGGEGGDGAVPEPEDLPLGEAWVIRLGPPADQDLTDESMACVRLLVPGASSLPLGAFPPHPHVAASARLRLRRRAEAEAVPFPGATDPPGAGPRSRPGPGQGGEPLPFPGW
>LR134350.1|VEG28968.1|2136010_2137318_+|Aminobenzoyl-glutamate-utilization-protein-B
MAHETAARAASTGPAPCLGEEAGAPPALRRRLSGVVADLADQVVALSQDIHAHPELGYEEHHAVAAVADLLGAHGIEAETGVYGMDTALRAVIGPPSDLTVPTIAVLAEYDALPGIGHGCGHNVMCASSVGAFLALAELARCDPEAVPGRVVLQTTPAEECSTAKEVLAVRGMLDGVDAAIQTHSYARDVADQTWLGVRRLTVVYTGVPAHASSQPFMGRNALDAATLVLTGLALLRQQILPMDRLHAVVLDGGQVPNVIPERAELSLFVRSKYPETLKDLVGRVEDLLRGAALMTGTGVEIRTDPHTNEMPVRSNGPLLAAWVRSQRERGRDPLAPGVLTETIAAGTDFGNVSQRVPGIHPLISVSTSPDVALHTREMAEASASPAGDAAAVDGAYGLAAVALDWLHDPGLRSAARQDFEAGGGVVDVEGFWRQ
>LR134350.1|VEG28970.1|2137494_2137794_-|Uncharacterised-protein
MSNVQADLDSLRQLYNTLKNDVELSHSIQTDTDSALSNTVWESANAEKFRAAWDEFKPKLIAFEQTFADAASDVATNHNNLVIANGEDDEHLPPVTAIA
>LR134350.1|VEG28972.1|2138038_2138746_+|Flp-pilus-assembly-protein-CpaB
MPLPQADSSRRRQERSHRSQPPGPPKDTDAARLPSAPRERRPILAALAVLLIVGGALLAGMLAMRMDHRAEMLAAASTIEAGQVITEEDLVSARVAADVPNLIPADRAGEVIGRTARVEIAEGQLLDSSQVASEPVPGQDKQVVGVSLEAGRFPAGGLDAGDLVTVVDVNGQTALVSEAQVLEAVPASGTDGDWSSGAVVSLIISPQDAAPLASAAAAGSIAVVVTAVDQPIGDS
>LR134350.1|VEG28974.1|2138745_2139549_+|Flp-pilus-assembly-protein,-ATPase-CpaE
MLVSVASAKGSPGASTSAHALAAVWPRPALLAELDPAGSDLMYRSRTPEGMPLDGDRGLVSLAAAVRRDPGAAPEEHLTVIEGGQQVLLGLARPDQAAAIGAGWAGLAGSLRSHGDVVADVGRLAPGAPSLGVALASDLTVMVVRPGVENYGHLRERLAWITAETTHRSERTSLCVVLIAPWKNRHEAADLARLLQVSGLDVPVVGVLAEDRAAADAFAGRKPRPLGRTLLVRSARTLAASLYTMGAPAPAQVLPAPAPLAGRRSQR
>LR134350.1|VEG28976.1|2139545_2140862_+|Type-IV-secretion-system-protein-virB11
MSVDQNLVRSMREEVADLLAQQRRDDATSGIPPMSPEDERQFARALIGRVLEQHARAEIAAGRSPLSAQDEEEVSQGIHAALFGVGRLQPLLENPDVENVDINGYDNVFIQYADGREERGAPVADSDDELVELVQILGSYSGLASRPFDSANPQLDLRLPDGSRLSAVMDVCSRPAISVRRARLDRVGLDELVGLGTLTPRLAAFCSAAVRARKNIMIAGATNAGKTTFLRALANEIPPSERLITVERALELGLGEFADLHPNVVAFEERLPNSEGAGAITMADLVRRSLRMNPSRVIVGEVLGDEIVTMLNAMSQGNDGSLSTIHANSSSEVFNRIATYAIQSAEHLPQDATNLLIAGAVDFVIFLTRENRFSQGGGLRRYVASVREVNGVDERVLSSEVFADDGTGTARPAAPIACIEDLVEAGFDPVASYGGGRA

Crispr_ID: LR134350_13

• CRISPR_ID: LR134350_13
• CRISPR_location: 2233859-2233961
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134350_13

Consensus_repeat	Method
GTCGGGGTATTCGGCCTGGCGGCCT	CRISPRCasFinder

spacers of LR134350_13

>13.1|2233884|53|LR134350|CRISPRCasFinder
CTTACTCCCTCCGCGTCGGATGTCATGCGAGCGAGCTCGCCGACATCCTCCTT

CRISPR arrays and Neighbor proteins around LR134350_13

CRISPR arrays

The CRISPR arrays of LR134350_13

>merge|LR134350|13|2233859-2233961|CRISPRCasFinder
GTCGGGGTATTCGGCCTGGCGGCCTCTTACTCCCTCCGCGTCGGATGTCATGCGAGCGAGCTCGCCGACATCCTCCTTGTCGGGGTATTCGGCCTGGCGGCCT

>LR134350|13|13|2233859-2233961|CRISPRCasFinder
GTCGGGGTATTCGGCCTGGCGGCCT	CTTACTCCCTCCGCGTCGGATGTCATGCGAGCGAGCTCGCCGACATCCTCCTT
GTCGGGGTATTCGGCCTGGCGGCCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG29156.1|2242937_2244434_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|223021
LR134350.1|VEG29144.1|2238364_2238523_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|379366
LR134350.1|VEG29119.1|2225020_2225575_-|NifU-like-domain	unknown	unknown	gnl|CDD|376458
LR134350.1|VEG29129.1|2229706_2231053_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-synthetase	unknown	unknown	gnl|CDD|377986
LR134350.1|VEG29123.1|2227725_2228016_-|ferrous-iron-transport-protein-A	unknown	unknown	gnl|CDD|377199
LR134350.1|VEG29114.1|2222705_2223968_+|Ferrochelatase	unknown	unknown	gnl|CDD|234585
LR134350.1|VEG29152.1|2241672_2241996_-|Branched-chain-amino-acid-transport-protein-(AzlD)	unknown	unknown	gnl|CDD|224601
LR134350.1|VEG29137.1|2234218_2235220_-|phosphodiesterase-YaeI	unknown	unknown	gnl|CDD|224326
LR134350.1|VEG29131.1|2231272_2231710_-|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl|CDD|227327
LR134350.1|VEG29154.1|2241989_2242760_-|Inner-membrane-protein-YgaZ	unknown	unknown	gnl|CDD|224215
LR134350.1|VEG29125.1|2228294_2228786_-|RNA-pyrophosphohydrolase	unknown	unknown	gnl|CDD|240032
LR134350.1|VEG29150.1|2240412_2241342_-|Soluble-epoxide-hydrolase	unknown	unknown	gnl|CDD|223669
LR134350.1|VEG29133.1|2232067_2233624_-|Diacylglycerol-kinase	unknown	unknown	gnl|CDD|224513
LR134350.1|VEG29142.1|2237829_2238156_+|Transcription-factor-WhiB	unknown	unknown	gnl|CDD|376791
LR134350.1|VEG29148.1|2239608_2240325_+|UV-endonuclease	unknown	unknown	gnl|CDD|223255
LR134350.1|VEG29127.1|2228903_2229710_-|cobyric-acid-synthase	unknown	unknown	gnl|CDD|225974
LR134350.1|VEG29140.1|2235233_2237486_-|Penicillin-binding-protein-1A	unknown	unknown	gnl|CDD|223815
LR134350.1|VEG29121.1|2225578_2227729_-|Ferrous-iron-transport-protein-B	unknown	unknown	gnl|CDD|273077
LR134350.1|VEG29116.1|2224038_2224854_+|putative-heme-peroxidase	unknown	unknown	gnl|CDD|377705
LR134350.1|VEG29146.1|2238687_2239365_-|cAMP-regulatory-protein	unknown	unknown	gnl|CDD|223736

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG29156.1|2242937_2244434_-|Uncharacterised-protein	gnl|CDD|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	3.62059e-12
LR134350.1|VEG29144.1|2238364_2238523_+|Uncharacterised-protein	gnl|CDD|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	1.43738e-07
LR134350.1|VEG29119.1|2225020_2225575_-|NifU-like-domain	gnl|CDD|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	1.25779e-11
LR134350.1|VEG29129.1|2229706_2231053_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-synthetase	gnl|CDD|377986	pfam08353, DUF1727, Domain of unknown function (DUF1727). This domain of unknown function is found at the C-terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.	7.84606e-38
LR134350.1|VEG29123.1|2227725_2228016_-|ferrous-iron-transport-protein-A	gnl|CDD|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	3.75706e-16
LR134350.1|VEG29114.1|2222705_2223968_+|Ferrochelatase	gnl|CDD|234585	PRK00035, hemH, ferrochelatase; Reviewed.	8.34335e-88
LR134350.1|VEG29152.1|2241672_2241996_-|Branched-chain-amino-acid-transport-protein-(AzlD)	gnl|CDD|224601	COG1687, AzlD, Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism].	3.83539e-14
LR134350.1|VEG29137.1|2234218_2235220_-|phosphodiesterase-YaeI	gnl|CDD|224326	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only].	3.64304e-42
LR134350.1|VEG29131.1|2231272_2231710_-|Uncharacterized-protein-conserved-in-bacteria	gnl|CDD|227327	COG4994, COG4994, Uncharacterized protein conserved in bacteria [Function unknown].	1.70504e-13
LR134350.1|VEG29154.1|2241989_2242760_-|Inner-membrane-protein-YgaZ	gnl|CDD|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	7.50565e-38
LR134350.1|VEG29125.1|2228294_2228786_-|RNA-pyrophosphohydrolase	gnl|CDD|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.15384e-35
LR134350.1|VEG29150.1|2240412_2241342_-|Soluble-epoxide-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.57618e-25
LR134350.1|VEG29133.1|2232067_2233624_-|Diacylglycerol-kinase	gnl|CDD|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	9.2273e-53
LR134350.1|VEG29142.1|2237829_2238156_+|Transcription-factor-WhiB	gnl|CDD|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	1.022e-20
LR134350.1|VEG29148.1|2239608_2240325_+|UV-endonuclease	gnl|CDD|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	2.44845e-86
LR134350.1|VEG29127.1|2228903_2229710_-|cobyric-acid-synthase	gnl|CDD|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.93229e-66
LR134350.1|VEG29140.1|2235233_2237486_-|Penicillin-binding-protein-1A	gnl|CDD|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	5.68908e-142
LR134350.1|VEG29121.1|2225578_2227729_-|Ferrous-iron-transport-protein-B	gnl|CDD|273077	TIGR00437, Ferrous_iron_transport_protein_B_homolog, ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. [Transport and binding proteins, Cations and iron carrying compounds].	3.79942e-119
LR134350.1|VEG29116.1|2224038_2224854_+|putative-heme-peroxidase	gnl|CDD|377705	pfam06778, Chlor_dismutase, Chlorite dismutase. This family contains chlorite dismutase enzymes of bacterial and archaeal origin. This enzyme catalyzes the disproportionation of chlorite into chloride and oxygen. Note that many family members are hypothetical proteins.	1.67466e-71
LR134350.1|VEG29146.1|2238687_2239365_-|cAMP-regulatory-protein	gnl|CDD|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.16197e-50

Protein sequences

>LR134350.1|VEG29133.1|2232067_2233624_-|Diacylglycerol-kinase
MRATHLHRLELSLFPALSVLFAWWTALVVTGGTRVLDARLRPPLLEPRSAAGQMSEAFSLVTHPFVIFLAIGVAAWLSFKRRMRRLAVALGVAALAIPLQVLLAIWIDRARPPTAFADSISHVGGAYPASHVTAVTVGAWVLVTLTRAHRRPGSSVARSSVLAVTAVAFTATCQWAMGLTYVSDIIGGLLLGASVANLALLVGGVDTILSNWAHLGLPEGDLDKRAAVVFNPTKFDDLSLLRRRVESEVLALGWQPTVWLETTPDDPGHHAARRAIEAGADVVLVAGGDGTVRAVSAELSGTDTPIALLPSGTGNLLARNLGIPLDIDDALRLALTGVSRRIDVVRARTDDADERFVVMAGMGLDAQIMDSTNDGLKKVIRAGAYAVAAVQNAVPNPFPATVTLDDGEPTQQDVVMVLVGNVGTITAGMTLFPHASPSDGQIDLMLASPDKVIDWARLGAQILTGKDMEGFATSSAARLRIETDEPVPFELDGDTAGTTRTLSIEVEPAALRVIVPEA
>LR134350.1|VEG29131.1|2231272_2231710_-|Uncharacterized-protein-conserved-in-bacteria
MVDHSPDPPHVPWELLSREPVFDLPEIIWDEDSFNAEVAADFHEIAASGTVYDRQTVQGIVLDRLAGLRPTSLDGGYRIEDAEVRLLGTDVAQVLYTLHGQRRVTRRSTLYRRRGTRWQVVFHQGTVVQGAAPLPPDHPAPGGAR
>LR134350.1|VEG29129.1|2229706_2231053_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-synthetase
MDLSPAASLRSRATIALGRAARAAARLRGGGSGGTALPGLVVERTDPGFLARTLGQLPHGVIVVSGTNGKTTTTKMVVQLLRDQGLRVLTNRSGSNFVRGVLASLLTEVDAGGRLDADIAVLELDEAHAVRFVELVRPRAALLLNVMRDQLDRFGEIDYTASLLRKVAAATTGVVVVNADDPRLAADHFLTGLTARTASFGAGEELRSLFLSDDDLRTGHAASQTPRPESCPEPRVRLDSIEDQRAVVTVDGQEHTIDFAIPGIHNMLNACAALSLCLEVLGDGADVPTLLTTLSEVEAAFGRGEVLELDGRRIQLALVKNPAGFRMSLLSAAAATADEVVMVAINDEYADGRDMSWLWDVDFSALRDGVAVVTGVRAWDMALRLRYEEVPVAAVEPDLGAALELLRAAAAEADGSAGRPMRVFTTYTAMLALRARLGQITDVEEAMA
>LR134350.1|VEG29127.1|2228903_2229710_-|cobyric-acid-synthase
MSGMSSVSGVSGAGGSAHEGLWEHRTEGPARGRLRVLQLYPRDMNIYGDWGNTLVLVRRAQWHGYDVELVSYDPGDELPGDVHLVVGGGGQDSGQSRIKDDLLARAAELSAWASDGVPMLVICGLYQLFGHRFATGTGTVIPGIGVIDAETVAGPGRLIGNITLDTDDLGRVVGYENHSGLTTLGPGARPFGRVLSGDGNNGTDSTEGGRVHHLIGTYLHGSLLPKNPVVADWLLARAVEHSGGRWDPAPIDDTWADRARAVAMSRPR
>LR134350.1|VEG29125.1|2228294_2228786_-|RNA-pyrophosphohydrolase
MPTPEFIVSLRTRIGHDQLWLPGVSLVVLDEADRVLLGRRADNGRWGVVSGIPEPGEQPAAAALRECVEETGVRPEILGVCRVLAEEPFAFPNGDRCVFMDTTFVARAHPEAAAQARVGDEESTAVGWFDLTALPEPLLATTPPRIEVALAWLADPVRAARFA
>LR134350.1|VEG29123.1|2227725_2228016_-|ferrous-iron-transport-protein-A
MTTVTTAVDQTAPSVSDTVTELSSLRRGARARIHSISTTRGTGLARRLADLGLEPGRVIEVGRRAPLGDPTVYRVADYELGLRRREADLVLVEVVA
>LR134350.1|VEG29121.1|2225578_2227729_-|Ferrous-iron-transport-protein-B
MTAGPEADAPPQDHAGTASCHEGGASCHCGQASGPVDHGADRIALAGAPNSGKTSIYNALTGLRAKTGNYPGVTVSRAMGTCTLSAAETGGQSQRITVEDLPGAYSLDPMSPDEQVVHDVLTGSAQHVERPDALVVVVDATTLSRSLGFVAQALALGLPTCLAVTMTDELTRRGGRLDVEALGTALGVPAVRVIGNRRTGIPQLRAALGSRHTWSSVPVPPPTDGAERLSWTESILTAADYEPPGRDSITTAIDRVLLHPVLGTITFLGAMFVFFQAIFAWAAPFQDAIESVFGVLGEAIHTWLDEPAPLLAGLLADGVIGGVGGVLVFLPQIAIMFLLIALMEGVGYMPRAAFLMDRVMGKVGLEGRAFVALLSSFACAIPGIMATRTLPSAKDRLATMLAAPLMTCSARLPVYLIMISLLVDEGTRVGPFGARGTVMFVLYLAGACAAVGAAWVVKRLTDRGGVLLPFYMEMPPYRLPRMRTVGVMVWDACKGFLKDAGTIILIATIVVWALLNVPLRSEAEFEAFCASDSRCTSIARAVEDPTSSTVTGADGATVTDAEELATLYDAQRTGYVMDNSLAASIGRAVQPVFEPLGFEWRINVAVLSSLAARETFVATLGQIATAGDPEEPAAELEAMTYQEDTLTNRAGDPLFNPATIAAVLAFFVFAMQCMATAGVIRRETGSWKWPVVAYTYLFVLAWVAAATVRAVVDALV
>LR134350.1|VEG29119.1|2225020_2225575_-|NifU-like-domain
MRLVPLHPVSTPDPATLRWVVPDGLLPFTGTVGRAPSPLQGLLDDGTLLAVEVTPGAVLTVLSDTLTWSDQGPRVRSALLDALHRPTRWSPGQGAVGVGPDEALEAAARQIAQGVVGELAARHGGAFTVVDVRDGVVEVALEGACHDCPAAAVTMQARFAHLLRRRCPWLVEVREHTGTPAPTG
>LR134350.1|VEG29116.1|2224038_2224854_+|putative-heme-peroxidase
MTGTSRTTDPASAPARGGAQGGVHRFEDEERRPHRDPRDAVDVDFDAINSGTHYALYAVLRLDSALPARREDRDLLVDEAVRAVDGTGATTRGWYDVAGLRSDADLMIWWLSEDPEVLQDAVHRLRASGLGRHLVPVWSCMGLHTPAEFNPRHVPACLAGVAPRDWCMVYPFVRSYEWYLLEAQERSRMMAEHGRHGFSAYPDVKGSTLATFGLSDYEWILGFEADSLDRLEGVIHHQRYTEARLHVRQDVPFYTGRRVEPHQWAERQPLA
>LR134350.1|VEG29114.1|2222705_2223968_+|Ferrochelatase
MSDPLAPYDAVLILSYGGPDGPQAVLPFMRNATAGRGVPDSRLVEVSGHYARFGGVSPINARNAELRRALRDELLARGSAVPVAVGNRNWHPFVSEALRALARDGARRVLALTTSAYASYSGCRQYREDLEAALTLLAAGLDGETGRGADADASARVGGPGGPPVDLVVDKTRPSFNTPGMLRANVEAVAEAFTALTSQGVVASGIRLVCVTHSVPEVMEHLSAPLPGQSGALVPQAGGLPDPGLAPDLSTEVSYVTQHERLIEVLRPAVTELLGLDAPPETDLVYCSRSGPPQARWLEPDVNDHLAALAAGRLTDGRRVPVPAGVVLAPIGFVSDHMEVVFDLDTEAAATAAALRLPFRRAATAGTHPAFVSSLADLLSERAATARGQRVVPASTTGTGPFHTVCPPGCCRPAPVRRGR
>LR134350.1|VEG29137.1|2234218_2235220_-|phosphodiesterase-YaeI
MTAPTALGVVGLAGAGLLGYALLEARWPVLRRVDVPVLARGEQPLTILHLSDLHLTDRTEARVAWVRDLAALGPDVVVNTGDNLSFASGLEPLRRALEPFSGLPGAFVLGDHDYRTTVFKLPTRYLLRDPRTANDPEREAAIEELPWEELRAIQVDNGWVDLTNARGSLEVDGRSIELVGVDDPHADRDLYPPLPTASAEDGRSGPPVVDHWGTPLRLGLLHAPYRRVLDAMAAEGVGLALAGHTHGGQLCLPGVGALVTNSDLDRGRASGLSRWPAPATGSPASPGRQDAAGANSHRQMHLHVSAGLGTSPYTPVRLACRPEATLLTLLPAS
>LR134350.1|VEG29140.1|2235233_2237486_-|Penicillin-binding-protein-1A
MLLVFLLLSSAGGLLTAGFAMPFVGAASAVTSASAQLFDELPDDFNVLEPSEISVIRASNGQQITQFYAENRIVVPLSEMSVNIQNAIIAVEDQRFYQHKGVDPAGIVRAVVSNANSGDTQGASTLTQQYVRNVLIEAGLRSDDPAAIAAAKAPTVARKLREIKYALTLEQKYSKQQILEGYLNIAAFGPSTYGVEASSRYYFSHSAAELTIPEAALLAGITNAPGAYDPEAYPDKAKSRMDWVLQKMYEEQFITEEEYQAGLATQIADMLKITSTPGGCAAAGSAAYFCEYVVSEIENSELYGASEAERRQLLLRGGLDITTTIDLDKQAAADAAVQEYVPTGDASGVKAALASVEPGTGRILALSQNTNYGEAASADSSTTQISLNVDASHGGMKNSDGTSGFQPGSTFKAFVLAQWYASGRSGYETMNTDPTTFPASTWTISCDPSKADSWKVGNANSSEGGTHNVIQNTALSINVGYARMTSKLDICDITGLAAKLGVTNNDGEALSPSPSIALGSQEVTPLQMANAYATFAASGMYCKPIAIDKIVDTDGNEIPVPSAECTQAMDATAADRTTATLQQVLTSQGTGRSAILSGGRPAAGKTGTTERMDNAWFVGYTPQLSAAVWLGHSEGYSPMDDQWIGGRYYSTMYGSDAPAPLWKMYMDAALSSAAVEGFPQVSLGSAPASSSSSSSQSNRGENTSGGQATQEPAQAEEQVVVEEQVVEEQVVVEQAEGGRAPEQQAITEDD
>LR134350.1|VEG29142.1|2237829_2238156_+|Transcription-factor-WhiB
MTTSDQTWAARAACSGVEPDQLFGKGAEQRDARSLCFSCPVRMECLAEALDTESSFGVWGGLTERERRALLRRFPEVTDWTAWLRREDDELVAEIHAHRAPRILARVR
>LR134350.1|VEG29144.1|2238364_2238523_+|Uncharacterised-protein
MTTWEYATIPLLTHATKQILDQWGADGWELVQVVPGPAGSESLVAYLKRPRS
>LR134350.1|VEG29146.1|2238687_2239365_-|cAMP-regulatory-protein
MEDSIISRIPLFEGMSSEEQDELRAMMAQTTLRRGEILFNEGEQGDRLYILLSGKVKLGHASADGRENLLAVLGPGEVVGELTLFDPGPRSTTATAVAPTDLLALEHGQLMAFIESHPALAKDMLRALAQRLRRTNTALADLVFSDVPGRVAKALLDLADRFGSPTEDGVHVPHDLTQEELAQLVGASRETVNKSLAEFVSRGWIRLEGRAVTLLDVDRLRRRAR
>LR134350.1|VEG29148.1|2239608_2240325_+|UV-endonuclease
MARTRGAASAPAATAAKASKAPEAPKAPEELRRRAAAVDDELSRHYPDARCALVHDGPFQLLVATVLSAQTTDARVNTITPELFGRWPDPAALAGADRAELEALLRPLGMQRTRAERLIGLGAALADRGGQVPSDVETLQTLPGVGRKTANVVLGNAFGVPAITVDTHVGRLSRRLGWTTASDPRAVERDIASLWEPWRWTDGCHRLIEHGRAVCRARSPLCEDCALATGLCPRVGVA
>LR134350.1|VEG29150.1|2240412_2241342_-|Soluble-epoxide-hydrolase
MPVTVNRPGPWTHRDLSVGGTRFHLALAGPEAPVPDSSDAGAQQGRAPAPLVLLLHGFPECWWTWHETLPRLADAGHRVAAMDLRGFGGSDRPPTGYDLVTLAHDVMGVVRALGHERVVVVGSGLGGQVAWTLAGLSPSTTAAIVPVGAPHPVAVRSLRGRSFSGSALQYLSFKTPVLPERSLSTTAGVERLLRSWAGPRTKSEVAESAGYYAALMARPGAARSALETVRRTRLSRAEAAALSSPVTVPVLSIQGELDPVQPAQAYARDTHHVAGRLHQVTIRGVGHFPHLEAPDVLVEVLLPFLAETA
>LR134350.1|VEG29152.1|2241672_2241996_-|Branched-chain-amino-acid-transport-protein-(AzlD)
MLSTTQVLLAVVVVAAITFLCRIAPFALLRGRGHSPLLAFLSTAMPLGVMIVLVAYTLGEVSLDPTTWAPAATGIGATAGLHLWRRSIALSLIGGTVVYVVVSLLMT
>LR134350.1|VEG29154.1|2241989_2242760_-|Inner-membrane-protein-YgaZ
MNTVRDGARDAVPVVIGYVTLGLAAGMLLSAAGLAWWWAPAWSLVIYSGTMQMLLVPLAAAGEPLAAIAASAAFVSGRHVFYGLGFPLDRVRGNRLARLYAVHAITDEVYALLASKDRLAMSGRYVLTVEALSHSAWISGTTVGALAGAGLASVVGERIELLGFVLTALFVVLAIENWRSHPDPAVLVLGLCAGGVALATGGSAALLSALGVLAAGLVALYAWRRRGSRGAEPLPAADPPTPDPGSAALEPRSGSC
>LR134350.1|VEG29156.1|2242937_2244434_-|Uncharacterised-protein
MSTESASTPDDAPEGVPLGSPGPKDAEEPGTGTGSDQAEAVPPAATQPVRTSRDGGDSLATTPLDGSVVGSAEAETPADPVAEPTAEPAEGPIESPGAPVRPVTVSTAIPVSPSGEPMPPSGEPATETTDATTPPAVPTPPATPAADSPAPPAAPAAPAAPVTVSTAVPVPPSGAPVSPSGEPATETTDATTPPAVPTPPATPAAESQAPPATPAAGGQAARAQHRAPHREPGDTAVRRRSLIPSDQTEEEPAEAVTQPVSRGEARAASMSPSPAAPAVPSRQDAERQPPTAGPGRPEELQAAGTGASRSGHGRHVSTERSEDEVLLDGSVTLGRPPSRAGSHWAGVLVSVVALPVSWYFLHLGAARAVEAADPLRFALNASALLALTVGAVALALALWTARRSSLGVTVVGVLSTLIGLVAVALPSVLSSTLTPTLERLTIHSDLGADLATYLWTDAVTGKFLAFGLFMIMVGWVSHSARRAGRREQENALRGRHAA

Crispr_ID: LR134350_14

• CRISPR_ID: LR134350_14
• CRISPR_location: 2347711-2347799
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134350_14

Consensus_repeat	Method
AGCCTCTCTGCGTGCCGGGGGAGACGCT	CRISPRCasFinder

spacers of LR134350_14

>14.1|2347739|33|LR134350|CRISPRCasFinder
TGCTGGCCGTCGCCCACTTCCACGGCGTCACGG

CRISPR arrays and Neighbor proteins around LR134350_14

CRISPR arrays

The CRISPR arrays of LR134350_14

>merge|LR134350|14|2347711-2347799|CRISPRCasFinder
AGCCTCTCTGCGTGCCGGGGGAGACGCTTGCTGGCCGTCGCCCACTTCCACGGCGTCACGGAGCCTCTCTGCGTGCCGGGGGAGACGCT

>LR134350|14|14|2347711-2347799|CRISPRCasFinder
AGCCTCTCTGCGTGCCGGGGGAGACGCT	TGCTGGCCGTCGCCCACTTCCACGGCGTCACGG
AGCCTCTCTGCGTGCCGGGGGAGACGCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG29312.1|2334258_2335287_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|370063
LR134350.1|VEG29318.1|2342436_2343432_-|Ribokinase	unknown	unknown	gnl|CDD|238920
LR134350.1|VEG29342.1|2355585_2356251_-|L(+)-tartrate-dehydratase-subunit-beta	unknown	unknown	gnl|CDD|236192
LR134350.1|VEG29326.1|2346668_2347481_-|Uncharacterized-conserved-protein	unknown	unknown	gnl|CDD|378058
LR134350.1|VEG29332.1|2350062_2350848_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|236090
LR134350.1|VEG29330.1|2349050_2349863_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG29328.1|2348238_2348610_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG29316.1|2337518_2342294_-|ATP-dependent-RNA-helicase-HrpA	unknown	unknown	gnl|CDD|182986
LR134350.1|VEG29340.1|2354107_2355589_-|Citrate/succinate-antiporter	unknown	unknown	gnl|CDD|279307
LR134350.1|VEG29338.1|2352809_2353697_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|380141
LR134350.1|VEG29324.1|2345657_2346455_+|Transposase-DDE-domain	unknown	unknown	gnl|CDD|372577
LR134350.1|VEG29320.1|2343528_2344554_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG29310.1|2333131_2334193_+|Glucokinase	unknown	unknown	gnl|CDD|273246
LR134350.1|VEG29308.1|2331531_2333031_+|High-copy-suppressor-of-rspA	unknown	unknown	gnl|CDD|129794
LR134350.1|VEG29336.1|2351647_2352124_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG29346.1|2357865_2358960_-|L-rhamnose-operon-transcriptional-activator-rhaR	unknown	unknown	gnl|CDD|225117
LR134350.1|VEG29334.1|2350844_2351651_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|236090
LR134350.1|VEG29314.1|2335696_2337256_+|Cardiolipin-synthase	unknown	unknown	gnl|CDD|234967
LR134350.1|VEG29344.1|2356334_2357291_-|L(+)-tartrate-dehydratase-subunit-alpha	unknown	unknown	gnl|CDD|181309
LR134350.1|VEG29322.1|2344550_2345261_-|Uncharacterised-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG29312.1|2334258_2335287_+|Uncharacterised-protein	gnl|CDD|370063	pfam08688, ASD1, Apx/Shroom domain ASD1. This region is found in the actin binding protein Shroom which mediates apical contriction in epithelial cells and is required for neural tube closure. ASD1 has been implicated directly in F-actin binding.	0.000740516
LR134350.1|VEG29318.1|2342436_2343432_-|Ribokinase	gnl|CDD|238920	cd01945, ribokinase_group_B, Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .	2.28295e-50
LR134350.1|VEG29342.1|2355585_2356251_-|L(+)-tartrate-dehydratase-subunit-beta	gnl|CDD|236192	PRK08228, PRK08228, L(+)-tartrate dehydratase subunit beta; Validated.	6.70019e-134
LR134350.1|VEG29326.1|2346668_2347481_-|Uncharacterized-conserved-protein	gnl|CDD|378058	pfam08818, DUF1801, Domain of unknown function (DU1801). This large family of bacterial proteins is uncharacterized. They contain a presumed domain about 110 amino acids in length.	7.51559e-13
LR134350.1|VEG29332.1|2350062_2350848_-|Uncharacterised-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000537468
LR134350.1|VEG29334.1|2350844_2351651_-|Uncharacterised-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	2.03353e-06
LR134350.1|VEG29316.1|2337518_2342294_-|ATP-dependent-RNA-helicase-HrpA	gnl|CDD|182986	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.	0
LR134350.1|VEG29340.1|2354107_2355589_-|Citrate/succinate-antiporter	gnl|CDD|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	5.42969e-132
LR134350.1|VEG29324.1|2345657_2346455_+|Transposase-DDE-domain	gnl|CDD|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.30507e-29
LR134350.1|VEG29314.1|2335696_2337256_+|Cardiolipin-synthase	gnl|CDD|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	3.28918e-134
LR134350.1|VEG29338.1|2352809_2353697_+|Uncharacterised-protein	gnl|CDD|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	0.000275062
LR134350.1|VEG29308.1|2331531_2333031_+|High-copy-suppressor-of-rspA	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.00091e-83
LR134350.1|VEG29346.1|2357865_2358960_-|L-rhamnose-operon-transcriptional-activator-rhaR	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.47895e-25
LR134350.1|VEG29310.1|2333131_2334193_+|Glucokinase	gnl|CDD|273246	TIGR00744, Glucokinase_Glucose_kinase., ROK family protein (putative glucokinase). This model models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. [Unknown function, General].	4.64302e-73
LR134350.1|VEG29344.1|2356334_2357291_-|L(+)-tartrate-dehydratase-subunit-alpha	gnl|CDD|181309	PRK08230, PRK08230, tartrate dehydratase subunit alpha; Validated.	3.60177e-180

Protein sequences

>LR134350.1|VEG29326.1|2346668_2347481_-|Uncharacterized-conserved-protein
MEPTPVPVDDFLATVPERRAAEAHRLIDLMREVTGAEPVMWGPSIIGYGSAPYRTAAGTEGLVPAAAFSPRKAAVTVYLSPALLTNTHLMGRLGRHKVGKSCLYLSRLDHADSEVLRELITRSFWEEVPPQRNRQGALARAHLRCVADYLASVALEARPMLDELRDLVRQVAPEAEEVVSYGLIGYRMPGRSRAAKVFVSGWRDHVALYPQPDDEALRAELSPWVRGKGTVWFSLSEDLPTALLERVVASMTGSGSPADAATSANGTTAD
>LR134350.1|VEG29324.1|2345657_2346455_+|Transposase-DDE-domain
MLSYRATLDVPSATARTVSAWLAAHRRWHDIRPHQRAATPWVQAVMVLRWLNEATSMRTLARDAGISIATAYRYLHEALQVISSQAPDLIEVITQLRHKGEPFVCLDGTLIRTDRVAARTERGNHSWYSGKHKAFGGNVQVITDHTGFPVWVSPVEPGSTHDLTAARAHALPALYKAASQGMPTLADKGYIGAGIGVLTPVKGARPCPDDATYNHLHASLRSPAERANAMLKHFKALQHVTLDPHTITHITATALVIISLNKQPR
>LR134350.1|VEG29322.1|2344550_2345261_-|Uncharacterised-protein
MVPVVPVVPGTPVRSRRRRGRLAALVSVLVVASGLTACSNGSQTSDPTANPTATQAPTTAGSPSAQASPSTTRQLTPESLSDPELGYTVTSIPEDLNATQTEALTAFIAFEHFTWRLWLTPAGSGTGMEGAEEVMSADSVTEIQGNYDALEPGEYMTGPVRSAILRIDVHDQHSPFEAEITVCTDQNGTKSYSATGEDITSPSQIGRFEYRYTLSTAEGAWKVFSETRVSTNECTA
>LR134350.1|VEG29320.1|2343528_2344554_-|Uncharacterised-protein
MMIRARSRIFLFLILLGTAAWLIVLTPCALAAYGKDSSSDASSSASTQADSDGGVQITVEATYTSSDGAAGSSATATSSTATTTVLPVCGYRQSMSGAGMVEHLSRPDVIQVQSTTSENWAEDYPGYETHAGDHAGYWYEPWCWSERAPDLSPTDFRTMSQAFESANSPVYVPAGSAPPTPTIDGRTLAQAAWDAVTIPAPTIAYNPTLGDAGSTLVGWYTWIWATTDTPSHVTATATAGPVTATVTATASGLDLSGPDTEIDCTGFGTPWSRDATGTDCTVVFTRSSAHLGGTTPLTTSISYTVAFTATDGSTGNLGNATTTSTTHIPVAEVQTLNTTDD
>LR134350.1|VEG29318.1|2342436_2343432_-|Ribokinase
MMLDGPVNASAPAPTGLFCGLAVVDVVQLVDSPPGPDEKMTAVDQAVSAGGPATNAAVTFAALGGRAALAAPVGTGPLAELVRADLAQHGVELIDCSGARGSLSVSSCTVSATTAQRSVVSTNGRATVDADPLLSWARRNRDAGLPAPDTVLVDGHYPALARAGLDLAIGWGSLRIMDAGSWKDGAEQLIGSCDVVAPSARFFPPGPDGPLTEPEEVAAWLRGRGVTGIVLTDGARPVRWWWHDGPRPSEHGQVVPPQVRALDTLGAGDVFHGALAHALASHGRGPTGSTRQAVDTESLSDAVRRACAVAAASTTTLGARAWITAPESGAF
>LR134350.1|VEG29316.1|2337518_2342294_-|ATP-dependent-RNA-helicase-HrpA
MNAGDTAESPEDMPLPAVAGGLEDSPASPVGTARSPRPGATSGDRESRGAESDEAGTDGGTGSHGRRDRGRGARGRQDQDRSQGRKRGGRRQHGQHGRRQQWPGFTAEQLAARASSVPAVVYPEELPVSARREEIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVTGMIGHTQPRRIAARSVAERIAHELGTPIGRDGVVGYQVRFTEETGPTTLVKLMTDGILLAEIQSDPMLRRYDTIIVDEAHERSLTIDFILGYLARLLPERPDLKVIITSATIDSARFAEHFGRALTREAPGPGGGRGPGAHGARDTTEPGPTAVLPAPVIEVSGRTYPVEIRYRPLTSEDGDEQDSQDGGARSGPPAQEDRDQVTGILDAVDELIATGPGDILVFLAGERDIRDTEAALIDHLGPRYTPDGRSRTPGAVEVVPLYSRLSAAEQHRVFEAHATRRIVLATNVAETSLTVPGIHYVVDPGLARISRYSNRTKVQRLPIEAVSQASANQRSGRCGRVADGVAIRLYSEADFLARPEYTEPEILRTSLASVILQMAALGLGAVQDFPFLDAPDPRAVRDGIQLLTEIGAIEPYAPGGSPRPERGPASRGPRLTAVGRRLARLPIDPRLGRMLLEAGELGCAGEVMVIVAALSIQDVRERPADRQEAADAMHRRFADRTSDFLTYLNLWRYLRTQSRELSGSAFRRMCRTEFLHYLRVREWLDVHAQLRQLARPLGLEAAPVELPTARAIRAARQALEPGSHEAQIAHGDVAAAVVALGRSADTPDADSIHRSLLVGLLSNVGNWDERRREYAGARGTRFTIWPGSGLRRTTYDWVMTAELVETSRLFARTVAKVDPRWVEEAAERAGLARHVVSEPYWSTRHGAAMVHEKVLLYGMTLVADRPRTLASVGTPAAREVAREMFLRSGLVEGAWHARHGFVERNRALLEELAEVEHRRRTRGLLADDEALLRFYDDRLPEEVTEAEAFDAWWRRERSRHPDLLDFTRELLLPQGEDTSGFPDSWVQGDLTLPLSYRFEPGRADDGVSVQVPVEVLGRVAPEGFEWLVPGLRPELVVATIRALPKRVRRQLVPAPDVGAQVWREILARYPQAGAPEPAGAPEGPGASAPGGGQDTAPPVSFRRAFSQAVLALRQVEIDDEDWAEARERLPEHLRVSFAALDADGGELGRSPDLIDLRTRLAESTEQAVRSAVHGAVAQAMAEARQRSGRHGHGGTDRAHATRGARGTGSRSGSRRGRGGGRSPDAGGRSGTRGTVPGGAVPGGTLPGLAERTGLEDWPVEVPGLEPPDRSTIPETIESTGTAGLVVRGYPTLVATGARTASLTILPDAVAQARSHGAGVTALALARTFLPTGRVTSRWTATESLTLAASPYRTTDALVEDIELAAARVVARRWAAQAGRDLGAVRERVVFEQLVGHVRDHLEDEVLSVARTVVRVLQAHREVERTVAAHSSLALLATLQEVREQAAALVGDGFVSATPPEQLAHLPRYLTALAMRVGKAQAAPAQDAALAHQVREAVAVVDRARERAAGLEPDPEREAVLEEARWLIEELRVSLFAQTLGTSRKVSLKRISKLVAGI
>LR134350.1|VEG29314.1|2335696_2337256_+|Cardiolipin-synthase
MTLIPQIADFWLAVELIIRVVALGIVPENRRPSSSTAWLLLIFLIPVVGLPLYLFLGSPWVHGKRFEQQVAANRATLEYTRSLPDAPQGARPSPQLDAVLRMNRSLTGLPCVTGEVIALHSDSSATYEAMARAVDAAEHHVHVEFYIQSWDEVTDVLYDALRRAAARGVDVRLLVDHLGSRKYPGWRHFGRRLDAAGVKWRLMMPLLPLKGRFRRPDLRNHRKVLIVDGTRAFIGSHNLIDPSYHLRRNIRAGREWVDLSVEVTGEIVLEAQAIFAMDWFFESGEVLDLEAVAPELSPEAAKELALRFDGEVPVVPLGQGPVVGGCAPQPGRPAAVVNAMQLVPSGPGYPTEPNLKMFLSLIQNATKRVSITSPYFIPDEALLSAIQSAAYKGVEVELFVGQESDQFIVNHAQRSYYSALLAAGVRIYRYPAPAVLHAKYMTVDGEVGVIGSANMDFRSFALNYEMMLLAFGGDLDDLLRDNDAYYRSVSTELTAQEWAAEPWHRRYIDNVCRLMSAVL
>LR134350.1|VEG29312.1|2334258_2335287_+|Uncharacterised-protein
MTLMPQRPASRPTSSPRSAPSRPAPASRRQASRSSAPRGQRLSSSARSGSRGRGGRRAPGARLGGVLGLGAVAFVVTVLVGLLATRPLGADDAPATATAAGPAPVVLDTEGFDPALLIDDEVFYDSTTMSLEEIASFIEEVNAGCRPGSDSTPCLAQASFDTEDQDPTVFCPGGYTGARSQSVAQIIAEVAASCDLNPQVLLVLIQKEQGLLTASGSTLTARDYEAAAGYACPDGAACDARYAGFFRQLYGAASQFQRYRVNPGEYDVVAGRTTSIAYSPDPTCGAAELTIANQATAGLYNYTPYQPNAQAASGGDACTSWGNWSFYGYFRTFFGDPTPSSP
>LR134350.1|VEG29310.1|2333131_2334193_+|Glucokinase
MHKWEAVGVGYEGTPSENRGSGRGESGRGPYRPKEEASVAVTIGIDVGGTKIAAGAVDDEGRVLTRVQKDSPAKERGAIIDTIVACATELRAVHPEAVAVGVGAAGFVAADRNTMASGTNLDWTGVRIGDEVAARAGLPVVVENDANAAGWAEARFGGGRGRSNVLVVTLGTGVGGAVVIDGRLVRGAAGFAAEIGHINVVPGGRPCGCGQRGCLERYASGTALGHNGWELARFQPAYASRIIELSGGDPDRISGKAVTAAAREGDRAALECYADLGHWLGVGIADLCAVLDPEVVVLTGGLTEAGPILLEPVTASFDAHLTARSRRPTIGVVISESGQDAGVIGAADLARCG
>LR134350.1|VEG29308.1|2331531_2333031_+|High-copy-suppressor-of-rspA
MSHSPQAPVNPYRVAAVVMIGSFMAVLDGTIVNVAVPSLQGYYAGPDGTPPPYSSVAWAITGYALATAAIIPLTDYGLRRVGHRWMYVGSIALFTLASVLCALSPSLGVLIAMRVFQGLCGGCIMPVGTALVASVAGDRLGRMMSLMGIPMLIAPVVGPILGGWLVDVASWHWVFLINVPFGLGAALLGLVLLPRRDSRRAAVLDVPGVLLMSPGLALVLWGVSNAGAGAPVASPSVWAPLAVGLAMVVLFVRRSLTTAHPLLDLTILGLRPYRTAILLAVSFQAAFTADLLLLPSYLQQVRGLGAMETGLLIAPTGLGALVTMPVAANLIDRLPPRRVIPFGMTAMLLSVLALTQVGPSTGVWWLAVVLTVQGMGIGGTMMPVSTAALQAVRRAEVGNATTLFNIGQQVFGAVGIAVVSVILALLLAATPLGGQAVAGELGGAQLAAGLAQAAQAFGRAFWMPTACLAVALVLALRLPNRVVVPAEDLPPVASSEARA
>LR134350.1|VEG29328.1|2348238_2348610_-|Uncharacterised-protein
MDIIVIAYTSPDSRTLSTTVAGVPVTVTATPVSYRFHWGDGTATTTTDPGAPYPNHTVYHDYTGTRSNVVITVTTTWEATFTPEGGTSQPVTGTITTTSSADPFDLVRTVTYLTDDAEEAQGH
>LR134350.1|VEG29330.1|2349050_2349863_-|Uncharacterised-protein
MGVAGVVLGCLRCDGVSRARPCSGLISDGGGLMSWFMTRLARSRRHMGALACTLVLVAAAGVGGCSDSGADSATPAPTARSSASGTATISSTPAASASGQASAQASESLPAWVPPLSSEEQASRDAALAMPEPARIDGMDENSPEGAAAAATYFLSLYPYIYATGDLTAWDEMSGEDCVYCASVRDNVVAIHADGGWSDPWQAEIVLNSCAVDLADSNRYVVTTSVSTPAYVGYSGVPVAPSSIPADQSTARVQVYWKDGRWIVEEGEVQ
>LR134350.1|VEG29332.1|2350062_2350848_-|Uncharacterised-protein
MNGGAAISYGGGLIYRPLMRTTLCWRRASALVCALVLAATAGTAGCSGSGADSASPSPTARSSASGTATTSSTPAASASGQASAQTPESGAPSWVPPLSSQQQASYDAAMATPEPSRPVGMDEQSPSGAAATAIHFLSLYPYAYTTGDLTTWKEMSEDDCIFCNSVITNVTDLHANGGWSDMWPLEIMVLTHGADPADPNRLVIKTHITAPAHTAHRGRPSEAFTVDAQDVIVRIQLYWHGDRWIVEEGEVTEQTTEGEDK
>LR134350.1|VEG29334.1|2350844_2351651_-|Uncharacterised-protein
MNGGAAISYDSGLMSCSLMRIARCRRLVSALVCALVLVAAAGVGGCSDSGADSASPAPTARSTASSPTASSSAASSTATAPSTPAAGSSGQASAEASESGTPSQVPSLSAEEQASRDAALATPEPSRPVGMDEQSPAGAAATASYFLNLFPYAFATGDLTTWKEMSEDDCIFCNSVIDDVDALHNSGGWSDMWTQEVFILSYGADPADPNRLVVTLHLTAPEHVAHRGRPSEAFTVDAQDVTIKIQLYWHGDRWIVEEGEIIEGGEGR
>LR134350.1|VEG29336.1|2351647_2352124_-|Uncharacterised-protein
MPSLSAEEQASRDAALATPEPTRLEGMDENSPYGASQVAAYFLNLYPYAYATGDLTAWKEISGDECIFCNSVIANVTEVHSGGGWSEHWQQELAVISYGTDPADPSRLVIEIHISTPDRMAYEGTPIMGRRISGGETTILVQVYWKGDHWIVEEGDVQ
>LR134350.1|VEG29338.1|2352809_2353697_+|Uncharacterised-protein
MHDDLLDTVRGCYGAVRLRDLGLTRTQRRHVAALIEAGHLAAGEHGVVSLPGTDRALVLARVHGGLLTCGKAMEYHGLPVVDRHDHIHLVVPDSGRFAALDGEVLHVDRRLPRPSPTSEPVEPLADALARYLRCHASPESPIVALDAALHAEIVTPEQIRALLHGYGSARARARLDRASRAARSPLETLARLDLEDAGMGFEDGVDIEGVGEVDLVVGGRIVVELDGYTYHSDEYQFGLDRWRDRQLLARGYLPLRFTRREVYAHQVVAEVRRALDRWKVSRSAAKSVEESLSVE
>LR134350.1|VEG29340.1|2354107_2355589_-|Citrate/succinate-antiporter
MSTADTASSADTRQAPVARRETRPWALGLALVVGVGLWLVPTPSGLAPEAWHLFAIFLATIVGIIAKAAPMGALSIIAMAVCAATGVLAPDGDSGDKVSAALSGFSNGTIWLIVSAFFAARAVISSGLGERLAYLFVKVFGRSTLGLAYGLGLADLVTSPAIPSNTARSGYIYPVMMSVSSAFGSTPQDPGTHRRLGTYLALSTYNLNLAVSVIFFTGAAPNAMSSRLAQDAGVSVDWPGWLAAAVVPGMVGVVAVPLVVYALNRPEVRRTPDASAMASRELARLGPVTRQEWTTLAVFVGMIGLWVMGDSLMSATTVALLGLGALLLTGALTWEQMKSERAAWDTLTWFAALVMMGSFLNELGFIGWLGDNVGSAMGGLGSFAAFAALTGVYALSHYLFASGTAHTASMFAVFLGVGLALGLPGVPLTVLLGAIPTLMGCLTHYGNGPAPLYFGSGYVELRTWWGTGLVLGLVHMAIWLAIGPLWWRVIGVW
>LR134350.1|VEG29342.1|2355585_2356251_-|L(+)-tartrate-dehydratase-subunit-beta
MAQDAATAHEHETASAERSHRITLTTPISRQDVEDIRVGDVVFLDGHITTCRDVAHRRVIEYGRQLPVDIRDGAILHAGPIIRALDEDRFEVVSVGPTTSMRMEKFEEEFIARTGVRLIVGKGGMGPGTQAGCREHGALHCVFPAGNAVVAATQVERVEGAQWRDLGMPETLWTFRVRQFGPLIVSIDAQGNNLFEQQKVIYNERKAEALATLRQKVRYIR
>LR134350.1|VEG29344.1|2356334_2357291_-|L(+)-tartrate-dehydratase-subunit-alpha
MTTADLDTHDAQPGTVAGARQSAGSLAELTDVVARFTALISRRLPDDVTARLKELAEEETNPMATMIYQTMERNQLLAEDLKRPSCQDTGLVQIFVNVGSRFPHTEGLAEALKEAVAQATRLAPLRHNTVETFDEVNTGTNVGSKSPWIYWNVVEGSDELTLHVYLAGGGCTLPGQGRTLMPGEGYEAAMEFVLDVMTSYGLNACPPLLVGVGIGSSIDAAAFMSKLALMRPVGSHSAHPKVAELETALREAIDSIGLGPQGLGGSRSTMGVAIENAARHPSVLSVAVNTGCWSHRRGTIRFDRDLGYELVTHQGVRL
>LR134350.1|VEG29346.1|2357865_2358960_-|L-rhamnose-operon-transcriptional-activator-rhaR
MGASAEISTETSAEGQLRRDHSAAARGLEAHQRVYAIGSYHYNWHPALELLAVTTGEIELCVAGRIERFSPGDVVAINSNDGHATLATQPRSTVLLLHVEAAYLASFTGSGSVPRFGCRSTEQTRREPAFTRLRALMARMMLMSDRHGPGATAAWESGLLAVVSTLFDHFLLPGQPGPTQTEGHRALERAVAHVDEHFRERLTLEHVARKVGFSAGYLSQIFPQQVGMTFSQYLTRVRLRHATRELGESPNRIATIALDNGFPDVKAFNTAFRRTFGRTPSAYRRLLTEDTRAADSVFHQRYVSRSDHEVMRVLRGWAAQDAAGGAEEPCATAALLARPTPLEEAVELARALSARLEEMTGSER

Crispr_ID: LR134350_15

• CRISPR_ID: LR134350_15
• CRISPR_location: 2365732-2365822
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134350_15

Consensus_repeat	Method
CGTGTGGTCTCCGGTCTCGGAGGCGCGGC	CRISPRCasFinder

spacers of LR134350_15

>15.1|2365761|33|LR134350|CRISPRCasFinder
GGTCAGCGAGGCGGGGGATGAGGGCCTTCCAGT

CRISPR arrays and Neighbor proteins around LR134350_15

CRISPR arrays

The CRISPR arrays of LR134350_15

>merge|LR134350|15|2365732-2365822|CRISPRCasFinder
CGTGTGGTCTCCGGTCTCGGAGGCGCGGCGGTCAGCGAGGCGGGGGATGAGGGCCTTCCAGTCGTGTGGTCTCCGGTCTCGGAGGCGCGGC

>LR134350|15|15|2365732-2365822|CRISPRCasFinder
CGTGTGGTCTCCGGTCTCGGAGGCGCGGC	GGTCAGCGAGGCGGGGGATGAGGGCCTTCCAGT
CGTGTGGTCTCCGGTCTCGGAGGCGCGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG29367.1|2371929_2373033_-|GtrA-like-protein	unknown	unknown	gnl|CDD|133022
LR134350.1|VEG29342.1|2355585_2356251_-|L(+)-tartrate-dehydratase-subunit-beta	unknown	unknown	gnl|CDD|236192
LR134350.1|VEG29371.1|2374254_2374647_-|Predicted-acetyltransferase	unknown	unknown	gnl|CDD|379228
LR134350.1|VEG29356.1|2366120_2367044_-|CAAX-amino-terminal-protease-self--immunity	unknown	unknown	gnl|CDD|224185
LR134350.1|VEG29348.1|2359926_2361891_+|Anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl|CDD|236212
LR134350.1|VEG29354.1|2364366_2365077_-|Fe(3+)-ions-import-ATP-binding-protein-FbpC	unknown	unknown	gnl|CDD|213235
LR134350.1|VEG29364.1|2369849_2370785_+|Pseudouridine-5'-phosphate-glycosidase	unknown	unknown	gnl|CDD|377251
LR134350.1|VEG29362.1|2368986_2369625_+|Response-regulator-protein-vraR	unknown	unknown	gnl|CDD|225107
LR134350.1|VEG29340.1|2354107_2355589_-|Citrate/succinate-antiporter	unknown	unknown	gnl|CDD|279307
LR134350.1|VEG29344.1|2356334_2357291_-|L(+)-tartrate-dehydratase-subunit-alpha	unknown	unknown	gnl|CDD|181309
LR134350.1|VEG29369.1|2373034_2374036_-|Exopolysaccharide-biosynthesis-protein-related-to-N-acetylglucosamine-1-phosphodiester-alpha-N-acetylglucosaminidase	unknown	unknown	gnl|CDD|378342
LR134350.1|VEG29338.1|2352809_2353697_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|380141
LR134350.1|VEG29346.1|2357865_2358960_-|L-rhamnose-operon-transcriptional-activator-rhaR	unknown	unknown	gnl|CDD|225117
LR134350.1|VEG29358.1|2367040_2367937_-|ABC-2-family-transporter-protein	unknown	unknown	unknown
LR134350.1|VEG29336.1|2351647_2352124_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG29350.1|2361901_2363170_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl|CDD|274164
LR134350.1|VEG29366.1|2370784_2371666_+|aminoimidazole-riboside-kinase	unknown	unknown	gnl|CDD|223598
LR134350.1|VEG29373.1|2374867_2375665_-|Transposase-DDE-domain	unknown	unknown	gnl|CDD|372577
LR134350.1|VEG29360.1|2368033_2368990_+|Redox-sensor-histidine-kinase-response-regulator-devS	unknown	unknown	gnl|CDD|226951
LR134350.1|VEG29352.1|2363386_2364370_-|ABC-2-family-transporter-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG29367.1|2371929_2373033_-|GtrA-like-protein	gnl|CDD|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.50842e-19
LR134350.1|VEG29342.1|2355585_2356251_-|L(+)-tartrate-dehydratase-subunit-beta	gnl|CDD|236192	PRK08228, PRK08228, L(+)-tartrate dehydratase subunit beta; Validated.	6.70019e-134
LR134350.1|VEG29371.1|2374254_2374647_-|Predicted-acetyltransferase	gnl|CDD|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.06118e-08
LR134350.1|VEG29356.1|2366120_2367044_-|CAAX-amino-terminal-protease-self--immunity	gnl|CDD|224185	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only].	1.85478e-16
LR134350.1|VEG29348.1|2359926_2361891_+|Anaerobic-ribonucleoside-triphosphate-reductase	gnl|CDD|236212	PRK08270, PRK08270, ribonucleoside triphosphate reductase.	0
LR134350.1|VEG29354.1|2364366_2365077_-|Fe(3+)-ions-import-ATP-binding-protein-FbpC	gnl|CDD|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.13966e-87
LR134350.1|VEG29364.1|2369849_2370785_+|Pseudouridine-5'-phosphate-glycosidase	gnl|CDD|377251	pfam04227, Indigoidine_A, Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.	1.46539e-144
LR134350.1|VEG29362.1|2368986_2369625_+|Response-regulator-protein-vraR	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.22745e-65
LR134350.1|VEG29340.1|2354107_2355589_-|Citrate/succinate-antiporter	gnl|CDD|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	5.42969e-132
LR134350.1|VEG29344.1|2356334_2357291_-|L(+)-tartrate-dehydratase-subunit-alpha	gnl|CDD|181309	PRK08230, PRK08230, tartrate dehydratase subunit alpha; Validated.	3.60177e-180
LR134350.1|VEG29369.1|2373034_2374036_-|Exopolysaccharide-biosynthesis-protein-related-to-N-acetylglucosamine-1-phosphodiester-alpha-N-acetylglucosaminidase	gnl|CDD|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	9.92404e-42
LR134350.1|VEG29338.1|2352809_2353697_+|Uncharacterised-protein	gnl|CDD|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	0.000275062
LR134350.1|VEG29346.1|2357865_2358960_-|L-rhamnose-operon-transcriptional-activator-rhaR	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.47895e-25
LR134350.1|VEG29350.1|2361901_2363170_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl|CDD|274164	TIGR02495, RADICAL-ACTIVATING_ENZYME, anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG, which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism, Protein fate, Protein modification and repair].	7.90444e-78
LR134350.1|VEG29366.1|2370784_2371666_+|aminoimidazole-riboside-kinase	gnl|CDD|223598	COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism].	1.17989e-31
LR134350.1|VEG29373.1|2374867_2375665_-|Transposase-DDE-domain	gnl|CDD|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.30507e-29
LR134350.1|VEG29360.1|2368033_2368990_+|Redox-sensor-histidine-kinase-response-regulator-devS	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	8.05458e-22

Protein sequences

>LR134350.1|VEG29354.1|2364366_2365077_-|Fe(3+)-ions-import-ATP-binding-protein-FbpC
MITIENMTKRHGSRTVLHDISLKALAGRVTGFVGPNGAGKSSTLRCLLGLDRIDSGSALFDGRPYRELRHPLRTVGAVLDGAGAHPSSTGRGHLRWVAAGTGLPRRRVDEVLELVGLTEAAGRRVRTYSLGMGQRLGLAAALLGDPEVLVLDEPVNGLDPGGIRWMRDLMRSRARAGGTVLVSSHVLAELAEVADDVVVIAEGRIRAAGTLTEVARGHADLEEAFFSLTAPAGRAS
>LR134350.1|VEG29352.1|2363386_2364370_-|ABC-2-family-transporter-protein
MNAARTAGTSAPASSGASGPSGTSEIGGVRDACDTHATGDAGSRTPEPPPVRTGRALSEGPVRLGGGVRRRDGRGVDEARRMILRHPLPWAVRAEALKAADLPALRWTAALTAAASALMLVVLHSSGSEPAASNQAQQDPTAAVQAAGYGFDAVAWTWTTLVQIGFLVAGLLLTTGEHTSTVGRTTLLVVPRRGAVWAARLTVLVLLATAAAALLVATGLVTCPEATTRESVAAAGRTAVWLVAAAVMAGGAGAALRQTLGAATVVLVLVVVAPVAADLLGDAATWLPGPAARAWVREASWADGAVVLAWTAAAMTAGGLRVVRTDA
>LR134350.1|VEG29350.1|2361901_2363170_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MIREVGRASGRDGKVRRAAPGGQETGRAAPGGQETGRAVPGGQETGWAVLGGREAGWAVLGGREAGRAVLGGREAGRAVLGGREAGRAVLGGREAGRAVPGGEEAGRAVPGGQETGRAAPGGAPAARVPGARAPSAPDRDHEPEIEAPGLDAHRLEAPGARAPEPVRPAPRGPAPAAPSPGDRPAEDLVIAGLVPLSTVDWPGRLVATVFCQGCPWNCFYCHNRALIPTRVPGLVDWWEVRDLLARRRGLLDGVVFTGGEALRQDALADAAAEVRAEGFAVGVHTAGCFPGRLRDLVARGLLDWVGLDLKALPEHYEAVVGAPGGAKAWQALDVLVDARARGGPAFEVRTTVVPGDVTAADALEVARRAHAAGARSFALQQARATGTSGTFAVTVPGWDAECERLAEAIEALGWEEFTYRAA
>LR134350.1|VEG29348.1|2359926_2361891_+|Anaerobic-ribonucleoside-triphosphate-reductase
MSDRTPDAVTAAPTAAHLAAAHPELVARGSADSAVAHGSRPTIDAVSTITEYLDRSDWRVNANANQGYSLGGMMLNTSGKVVANYWLSQVYPQAAGEAHRAGDIHIHDLDMFAGYCAGWSLKNLLQQGLGGVPGKISSAPPKHFSSAVGQIVNFLGTLQNEWAGAQAFSSFDTYMAPFVRLDSMTYEQVLQCMQELIFNLNVPSRWGTQTPFTNLTFDWTCPADLADEHPLIGDELCDFTYGDLEAEMALINRAFMEVMTEGDAEGRVFTFPIPTYNITKDFDWDSEGADRLFAMTAKYGLPYFQNFINSELDPGMIRSMCCRLQLDLRELLKRGNGLFGSAEQTGSVGVVTVNMARLGYLHPGDEAGLLEALDRLLELGMTTLELKRAVIQHHIDAGLFPFTKRWLGTLENHFSTLGVNGMNEMVRNFTHDDYDLTDPRGHDLCARVLDHVRDTMVRFQEETGHLYNLEATPAEGTTYRFAKEDRKRFPGILQAGTDTNPYYTNSSQLPVGYTDDPFEAQEMQEELQTKYTGGTVLHLYMNERVSSARACKELVRRSLTAFRTPYITITPTFSVCPTHGYLPGEHTTCEKCAALHPEADPVACEVWTRVMGYFRPVESFNIGKKGEYAERTMFTEDAARSHGDAVSRLAPARA
>LR134350.1|VEG29346.1|2357865_2358960_-|L-rhamnose-operon-transcriptional-activator-rhaR
MGASAEISTETSAEGQLRRDHSAAARGLEAHQRVYAIGSYHYNWHPALELLAVTTGEIELCVAGRIERFSPGDVVAINSNDGHATLATQPRSTVLLLHVEAAYLASFTGSGSVPRFGCRSTEQTRREPAFTRLRALMARMMLMSDRHGPGATAAWESGLLAVVSTLFDHFLLPGQPGPTQTEGHRALERAVAHVDEHFRERLTLEHVARKVGFSAGYLSQIFPQQVGMTFSQYLTRVRLRHATRELGESPNRIATIALDNGFPDVKAFNTAFRRTFGRTPSAYRRLLTEDTRAADSVFHQRYVSRSDHEVMRVLRGWAAQDAAGGAEEPCATAALLARPTPLEEAVELARALSARLEEMTGSER
>LR134350.1|VEG29344.1|2356334_2357291_-|L(+)-tartrate-dehydratase-subunit-alpha
MTTADLDTHDAQPGTVAGARQSAGSLAELTDVVARFTALISRRLPDDVTARLKELAEEETNPMATMIYQTMERNQLLAEDLKRPSCQDTGLVQIFVNVGSRFPHTEGLAEALKEAVAQATRLAPLRHNTVETFDEVNTGTNVGSKSPWIYWNVVEGSDELTLHVYLAGGGCTLPGQGRTLMPGEGYEAAMEFVLDVMTSYGLNACPPLLVGVGIGSSIDAAAFMSKLALMRPVGSHSAHPKVAELETALREAIDSIGLGPQGLGGSRSTMGVAIENAARHPSVLSVAVNTGCWSHRRGTIRFDRDLGYELVTHQGVRL
>LR134350.1|VEG29342.1|2355585_2356251_-|L(+)-tartrate-dehydratase-subunit-beta
MAQDAATAHEHETASAERSHRITLTTPISRQDVEDIRVGDVVFLDGHITTCRDVAHRRVIEYGRQLPVDIRDGAILHAGPIIRALDEDRFEVVSVGPTTSMRMEKFEEEFIARTGVRLIVGKGGMGPGTQAGCREHGALHCVFPAGNAVVAATQVERVEGAQWRDLGMPETLWTFRVRQFGPLIVSIDAQGNNLFEQQKVIYNERKAEALATLRQKVRYIR
>LR134350.1|VEG29340.1|2354107_2355589_-|Citrate/succinate-antiporter
MSTADTASSADTRQAPVARRETRPWALGLALVVGVGLWLVPTPSGLAPEAWHLFAIFLATIVGIIAKAAPMGALSIIAMAVCAATGVLAPDGDSGDKVSAALSGFSNGTIWLIVSAFFAARAVISSGLGERLAYLFVKVFGRSTLGLAYGLGLADLVTSPAIPSNTARSGYIYPVMMSVSSAFGSTPQDPGTHRRLGTYLALSTYNLNLAVSVIFFTGAAPNAMSSRLAQDAGVSVDWPGWLAAAVVPGMVGVVAVPLVVYALNRPEVRRTPDASAMASRELARLGPVTRQEWTTLAVFVGMIGLWVMGDSLMSATTVALLGLGALLLTGALTWEQMKSERAAWDTLTWFAALVMMGSFLNELGFIGWLGDNVGSAMGGLGSFAAFAALTGVYALSHYLFASGTAHTASMFAVFLGVGLALGLPGVPLTVLLGAIPTLMGCLTHYGNGPAPLYFGSGYVELRTWWGTGLVLGLVHMAIWLAIGPLWWRVIGVW
>LR134350.1|VEG29338.1|2352809_2353697_+|Uncharacterised-protein
MHDDLLDTVRGCYGAVRLRDLGLTRTQRRHVAALIEAGHLAAGEHGVVSLPGTDRALVLARVHGGLLTCGKAMEYHGLPVVDRHDHIHLVVPDSGRFAALDGEVLHVDRRLPRPSPTSEPVEPLADALARYLRCHASPESPIVALDAALHAEIVTPEQIRALLHGYGSARARARLDRASRAARSPLETLARLDLEDAGMGFEDGVDIEGVGEVDLVVGGRIVVELDGYTYHSDEYQFGLDRWRDRQLLARGYLPLRFTRREVYAHQVVAEVRRALDRWKVSRSAAKSVEESLSVE
>LR134350.1|VEG29336.1|2351647_2352124_-|Uncharacterised-protein
MPSLSAEEQASRDAALATPEPTRLEGMDENSPYGASQVAAYFLNLYPYAYATGDLTAWKEISGDECIFCNSVIANVTEVHSGGGWSEHWQQELAVISYGTDPADPSRLVIEIHISTPDRMAYEGTPIMGRRISGGETTILVQVYWKGDHWIVEEGDVQ
>LR134350.1|VEG29356.1|2366120_2367044_-|CAAX-amino-terminal-protease-self--immunity
MSAGASRRVQDPGASEPSLLAGVRPPREAEGSRGRGAGADDGRTGSRRVGSSRDGLPGDWTPGDGSPGDGSPGDGPPGAGAPAHRPRGHDVVLRAAFVAGYVCVFLLKLPTLWVPEGQRHGLTMTAYVVLFVLGVLGWRTELVDRFRQVVARKRRALATLGLGFLLIIVVETAGGLAAQWLSEVVPGGRAGLVNDSNVMAVVDRYPPWVIVAVLAVAGPIVEELFFRQLLLTGVARFSRPWVGLLVSSVLFGTLHMSSLHASEWIGVIPHACFGLALGVVFLRTRRNLVFPATLHVLNNLSAVLPMI
>LR134350.1|VEG29358.1|2367040_2367937_-|ABC-2-family-transporter-protein
MNNDPIVAGEAPTPTRRTRARSIRTRARSSRGAPALASRRPAVLRALHAEALKLAGTPGAWGGAALAVTLPVALELLNTRGMAAQLAADPDSYLYELLPDMGFMDAIFGVVGVVVIGAVSVAGEYTPTAQSLGSARRVSTALLVEPRRGVTMTAKVLVVLGATAVLAALACTLTFTVTARALGEWSPSFWPVPWGRVAGLSAWWALNALGAMALASLTRGALVPLAWGLTTSSLVSPGLLLSRVTDLAAYLPDSAAFGLTMTDYDAPMLSTGRTWAVLAAWGLVALVLVAVPWTRRDA
>LR134350.1|VEG29360.1|2368033_2368990_+|Redox-sensor-histidine-kinase-response-regulator-devS
MRAPGPVRRLLGVPAAARSRARARARWTATVLGLAILLLVGISPGPVPAAWVHVPAWVLLVVLVSALIWLRRRDRIAYEAALTEQAARAAVAEDRLAIARDLHDLVSGGLGAITVRAAVAQRLDSDEAGLRTALAEVEETSRAATAELRSMLAVLRGQDPAPEPVLGAPPLAEAVASAAAGARDLGLEVRTRVDPGAADAAAGALALAVVREGLANVARHAGPVGVDVVVQADGEALQVEVLDDGPAPGWVPQPGTGTGLAALDERLRAAGARLRAGPCGEGGGLEGLAGAPGAGADGARARGYRLSARIPLESGAAR
>LR134350.1|VEG29362.1|2368986_2369625_+|Response-regulator-protein-vraR
MSGPVRVIVAEDQALLRASLAALLDAEPDLEVVGQAADGAEAVRLAMRLRPDVVLSDIRMPVTDGIEATRLIRAALPDTRVLVLTMFEVDEYVLGALRAGAAGFLLKDADPQAVVDAVRTVHAGQSLLSPQVLARIISPVPQGRHGGGIEGLTPRQTDVLRLIARGRSNAEIEVELGITRATCRTHITALLARLGARDRAQLVIAAYEAGLV
>LR134350.1|VEG29364.1|2369849_2370785_+|Pseudouridine-5'-phosphate-glycosidase
MVTQPIRVSDEVLSALEDGRPVVALESTIFTHGLPRPRNLEVALEGEAIARENGAVPATIGVFHGQAVVGLSPDEIEELAGSDGLLKASIRELAYARVHGLSAGTTIAATAYLANRVGIDVFATGGLGGVHHGASTTFDESADLVALAKTSFILVSSGAKAILDIGATLERFETLSVPVVGYRTNSYPGFYVADSGYTVNQRVDTPEQAAELLVTQRALGIEAGINLANPVPVDEQLDTEGFDAILERAWADAERDGISGQATTPYLLDYIRVATEGRSLDANVALYRNNVRLASAVAGALAARSASGEAR
>LR134350.1|VEG29366.1|2370784_2371666_+|aminoimidazole-riboside-kinase
MLAVIGDIVQDVVVWQLEEVRPATDTRSQIHIRRGGSAANVAAFAGPRTPTRFIGCVGDDLAGLVLTRDLEGRGVEVRNQVRGTTGTIVVLIDLQGERTMFPSRGASGMLEPLDPDLLADVDLLHLTAYSLLTDSAHRAVLDAARRVHAHGGRVSLDVSSVGLVEELGAEVVTAAVEDLGPEIISANRDEALVLGLADGDEPGPLLARLPGTTLLARNGAQATRVFAGGRLAATVPVEPVEAVADLTGAGDAFNAGFLASLQGGGGDLVAHVEAGHALARRVLTVPGATEPED
>LR134350.1|VEG29367.1|2371929_2373033_-|GtrA-like-protein
MSVSTRPGTGSFPTRRRILGEGMTRHSRPLASGPSPRRTARRMTGAIRAVEIPAPPVELVVLVPAYRPDMRLARLVADLGRRLPGCQVLVVDDGSGAAFEEVFAAARAAGSWPQADVVCADADGQHTPADIAAVAARVRSTGRMTLGVRMFTGQVPLRSRIGNDVTALLFRGATGWRLRDTQTGLRGYPAGCLDWLLTVPGNRYEYELSTLLRAHELGLGVEEVEIETIYELGNTSSHFRPLVDSARIYAPLLRFVGASLASFAIDWLAVMVLFALTGNLLASVVGARLTSGTCNFFLNRRVFHAAPGTVGRTALRYVTLALTLLAASYVALWTLTGLGVPLGVAKIIGDGSIYVASYLAQRRVVFR
>LR134350.1|VEG29369.1|2373034_2374036_-|Exopolysaccharide-biosynthesis-protein-related-to-N-acetylglucosamine-1-phosphodiester-alpha-N-acetylglucosaminidase
MTSKHEAAPDATERPAKKKHTRRNILLGGAAVLGLTATGTSAWALNRFVIDHTEISDVAAYEAANSSVQSTAQATAAAATDIEVTDTSYSSSNTTITIEQVSTGSGSDTITYFTADITVSDATTVRSAFANNEYGTNITAKPSEIASEHDAVFAINGDYYGFRTDGILIRNGVIYRDSGVRDGIVFYTDGRVEVYDETTTDAQTLLDAGAWNTCSFGPALLQGGEILSGIDDVEVDTNVGNHSIQGEQPRTAVGVIDTNHYMFVVVDGREEGYSRGVTMTELAQIMKDLGCQAAYNLDGGGSSAMYFNGSIINQPSNGGERDTSDILYIANGA
>LR134350.1|VEG29371.1|2374254_2374647_-|Predicted-acetyltransferase
MFADMDGTSTEHLREATAAWVEAALASAEHRIVVVEVDGDVVSCAMARLEHGAPAPSCPSGTSAVIFTVVTRRHARGRGYARRCLEALLEWAADRADRADLQASDQGASLYASLGFAPAAYRSMRRPLDG
>LR134350.1|VEG29373.1|2374867_2375665_-|Transposase-DDE-domain
MLSYRATLDVPSATARTVSAWLAAHRRWHDIRPHQRAATPWVQAVMVLRWLNEATSMRTLARDAGISIATAYRYLHEALQVISSQAPDLIEVITQLRHKGEPFVCLDGTLIRTDRVAARTERGNHSWYSGKHKAFGGNVQVITDHTGFPVWVSPVEPGSTHDLTAARAHALPALYKAASQGMPTLADKGYIGAGIGVLTPVKGARPCPDDATYNHLHASLRSPAERANAMLKHFKALQHVTLDPHTITHITATALVIISLNKQPR

Crispr_ID: LR134350_17

• CRISPR_ID: LR134350_17
• CRISPR_location: 2934153-2934243
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134350_17

Consensus_repeat	Method
AGGGGGTGCAGTCACTGCACCCC	CRISPRCasFinder

spacers of LR134350_17

>17.1|2934176|45|LR134350|CRISPRCasFinder
ACCCCCCACACCCGACAGTGAGATAAAACACACCGACCGCGGTCG

CRISPR arrays and Neighbor proteins around LR134350_17

CRISPR arrays

The CRISPR arrays of LR134350_17

>merge|LR134350|17|2934153-2934243|CRISPRCasFinder
AGGGGGTGCAGTCACTGCACCCCACCCCCCACACCCGACAGTGAGATAAAACACACCGACCGCGGTCGAGGGGGTGCAGTCACTGCACCCC

>LR134350|17|17|2934153-2934243|CRISPRCasFinder
AGGGGGTGCAGTCACTGCACCCC	ACCCCCCACACCCGACAGTGAGATAAAACACACCGACCGCGGTCG
AGGGGGTGCAGTCACTGCACCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG29997.1|2923745_2924132_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|379809
LR134350.1|VEG30008.1|2937497_2938805_-|Manganese-transport-protein-MntH	unknown	unknown	gnl|CDD|234815
LR134350.1|VEG30014.1|2946016_2947819_-|Iron-import-ATP-binding/permease-protein-IrtA	unknown	unknown	gnl|CDD|224055
LR134350.1|VEG30013.1|2944286_2946020_-|Iron-import-ATP-binding/permease-protein-IrtB	unknown	unknown	gnl|CDD|224055
LR134350.1|VEG30006.1|2934244_2935366_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG30007.1|2935362_2936472_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|379352
LR134350.1|VEG29996.1|2921853_2923719_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|367497
LR134350.1|VEG30002.1|2930381_2931722_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|236090
LR134350.1|VEG30004.1|2932501_2932774_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG30012.1|2943947_2944262_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG29999.1|2925761_2927393_-|conjugal-transfer-coupling-protein-TraG	unknown	unknown	gnl|CDD|378923
LR134350.1|VEG29995.1|2921449_2921857_+|Bacterial-mobilisation-protein-(MobC)	unknown	unknown	gnl|CDD|368576
LR134350.1|VEG30003.1|2931724_2932498_-|Zonula-occludens-toxin	unknown	unknown	unknown
LR134350.1|VEG30015.1|2948018_2949314_+|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG30009.1|2939102_2940419_+|enterobactin-exporter-EntS	unknown	unknown	gnl|CDD|340863
LR134350.1|VEG30000.1|2927389_2928886_-|Type-IV-secretory-pathway,-VirB4-components	unknown	unknown	gnl|CDD|274279
LR134350.1|VEG30001.1|2928882_2930385_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG30010.1|2940511_2942188_+|Arginine--tRNA-ligase	unknown	unknown	gnl|CDD|234964
LR134350.1|VEG29998.1|2924169_2925765_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG30011.1|2942216_2943683_+|Diaminopimelate-decarboxylase	unknown	unknown	gnl|CDD|143501

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG29997.1|2923745_2924132_+|Uncharacterised-protein	gnl|CDD|379809	pfam16259, DUF4913, Domain of unknown function (DUF4913). This family consists of uncharacterized proteins around 150 residues in length and is mainly found in various Arthrobacter species. The function of this family may be functional in enableing the growth of Arthrobacter sp. strain JBH1 with nitroglycerin as the sole source of carbon and nitrogen.	3.9855e-23
LR134350.1|VEG30014.1|2946016_2947819_-|Iron-import-ATP-binding/permease-protein-IrtA	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.58883e-127
LR134350.1|VEG30013.1|2944286_2946020_-|Iron-import-ATP-binding/permease-protein-IrtB	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.778e-132
LR134350.1|VEG30007.1|2935362_2936472_-|Uncharacterised-protein	gnl|CDD|379352	pfam13730, HTH_36, Helix-turn-helix domain.	1.3279e-15
LR134350.1|VEG29996.1|2921853_2923719_+|Uncharacterised-protein	gnl|CDD|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	2.31891e-05
LR134350.1|VEG30002.1|2930381_2931722_-|Uncharacterised-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	1.04246e-07
LR134350.1|VEG30008.1|2937497_2938805_-|Manganese-transport-protein-MntH	gnl|CDD|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	7.09661e-146
LR134350.1|VEG29999.1|2925761_2927393_-|conjugal-transfer-coupling-protein-TraG	gnl|CDD|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	1.63266e-29
LR134350.1|VEG29995.1|2921449_2921857_+|Bacterial-mobilisation-protein-(MobC)	gnl|CDD|368576	pfam05713, MobC, Bacterial mobilisation protein (MobC). This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localized DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA.	0.00010902
LR134350.1|VEG30009.1|2939102_2940419_+|enterobactin-exporter-EntS	gnl|CDD|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.8944e-37
LR134350.1|VEG30000.1|2927389_2928886_-|Type-IV-secretory-pathway,-VirB4-components	gnl|CDD|274279	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.	0.00101998
LR134350.1|VEG30011.1|2942216_2943683_+|Diaminopimelate-decarboxylase	gnl|CDD|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	3.97804e-118
LR134350.1|VEG30010.1|2940511_2942188_+|Arginine--tRNA-ligase	gnl|CDD|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0

Protein sequences

>LR134350.1|VEG30004.1|2932501_2932774_-|Uncharacterised-protein
MNVFVPMIDPQPVEPPGVGSDVTTILSYVMWIGGITCFVSIVTIGVIFFLNATGRIGSGAEENVTRIGYVALASGLIGGASGITYALTGV
>LR134350.1|VEG30003.1|2931724_2932498_-|Zonula-occludens-toxin
MVVQGQENRDERPGAELLSSRSFVVGMVFVVVVALMAVWLVVDSAVDQGRDESVEAPASNSPADREVAASAAGEDPSASSVCGLSPGEQAPPSGPLPMEVVSVTDTVSVPVVEGVGPGRVTNGQVSHCFAHSPTGAVVAAANFLRWFSAQERLPDVVETLVAPGTDRDRLLEQIELGWDGGTTRPFAVMGYKVEVRRDDEVLVTMLTSTSVEDRRLVSWPLVMVWQDGDWKVQAPSTDSWGQEGQESDAGFTPWVVR
>LR134350.1|VEG30002.1|2930381_2931722_-|Uncharacterised-protein
MADCWFWQMQCHAEETANKVAENIVALWGRSTLEGLDKALAKVGTFWVDTPTPDVSSSESATTYVVDSTSWLAGVVLAGSLMVAGIYLMWSMRGEEVRKVLGGILRMIMVTGVATTASQLLIEISDSLSTWFLDQAIEDMNGSFATKLLVITSVTPSEVGWLMIILGGVVGILANLLQMGLMFVRSAMLVLVVGIMPLAAAAAITDWGRDWLSRIVGWVVAFALMKPAAAIIYGVAIKLVTSGTATATDSLGSFVQGIILMVMAALALPALVRFIVPAAGAVASGGGAGALAAGAGTLATGAVMVSRRGSKGSSRSGGGAQADRSASKEPDGSPGTVGGQKSPGPTGAAAAPSRGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGAAAAAGPAAVVMVGAQAVRKGAVAAASATESATGESASGAGQVAR
>LR134350.1|VEG30001.1|2928882_2930385_-|Uncharacterised-protein
MSATEQPQVVTYGGWRVSRPAGLGKFTLGQTLALFICAAGLVMVEMTAGLSWAVVLAAPLVLVALISTVRDKHGLSWFDKRGEKMKFRGARRRKTNLFRTGLLDVSASSSWRCRLPGVLGSLNLSEHQDAWGRVFTVVHHGDGRLTVPMALAPAGEDLVDRDAIERKVALWGLLLMDLANETGVVGATVTVETSPDTGQRLVQEVSARRCQDGPELARQIVDDVVAAAAGTGVRVRTWVTVSFRPEVSATTRRDRRERAVQEIAMRLPGLTQILVESGDGAVHLLDRQEMTRVVREAYDPESAAVFEQAAADGLVVDLDLSEAGPISAEADWDSYRHDSGLSRSWVMSRPPRGLVQSRVLRRVLEVSRDVEIKRVTILYRPVDPSRAPDVVEKDVDKATARQRMARRPTERMSREVAQAVKTAHEEASGAAVLDFGVVMTATVTGDQARERLETASAAVTSAAAGSHLLTRVAYGAQDTTFAMGLPLGLVPSRQQLTGGW
>LR134350.1|VEG30000.1|2927389_2928886_-|Type-IV-secretory-pathway,-VirB4-components
MTVGLMRSLAARMLAGPEQAAVPRGPGSGAVSAWPRMEPWRGTSVQVCGLWPLIVGGAPPVVGAPLGPVLDGEGFVCADHISWFETGLISAPSAMVLALNGVGKSSLVRRIVAAHADMGIHSMVLGDIKPDYVDLIRALGGQVITIGHGQGGINPLDAGNVGQAAAALATDPARRSALLKAAHERKKNMVLSLIQIMRRQPPGNREEIVIDEAVRILEDRGGQPALPDLLQVLREAPEQLRSVALDRGELSRYREVTEELEVSLMALLRGRMGAIFAARETTPMLMDRDVVFDVHDLMHEHSDIQAAVLLSCWSYGFATVEISQALADAGVAPRRRYSLVMDELWRILQASSGMVERVDSLTRLNRTIGIGQMMITHSMADFSSLSSQEDRTKAAGFVERSKMLLLGALPAKEMPLLEGVMDFSEAEKNRLISWSAQGGYDPFSQEALPPAGMGRFLLKTSGAPGVSFRVDFAPAERRLSDTNRRWEAKQKELREQRP
>LR134350.1|VEG29999.1|2925761_2927393_-|conjugal-transfer-coupling-protein-TraG
MNGWQPSTLVKAMALAIGGWALAAFTLGTQAWAHATGIRVPLNPFTALALMARGQLSPTAGTWASVVVAGLVLAALPAAMTSTVRARRRGDGAARLTGRPADTASLNEREVADKARRLGVKADVAGLPVGRAVAGGRRLWSSFEDVCVMIAGPRTGKTSCWVVPRVLRAPGAAVVTSNKRDVLDSTRQERARRGRVWVFDPQGIADEPQSWWWDITSYVTDAMQAQALARIFVDTTRPAGAQASSAYFDAASRNLIAALLLAAARSEKPLSALHGWLNDEADREPVRLLRAAGEMQMAQTLEGIMNLVYQTRSGVYGGASTTMSFLLNDRAMRWVTPQPFLTQLRPEDLVASTDTLYCLSQEGRRSAAPIVTALTVAVTEAAVDHAKTQAGGRLAAPLLIELDEAANVCRWGDLPAMYSHFGSRGICVDTLVQSWSQGTAAWGEEGMRTLWSAANVKVYGGGVSEKGFLTDLSELLGSHWVPSKQRTRSRQGWSATYSMDAQQRQIATVADLQALPAGRAWVLASGSKPVLTKMIPFWKVRGE
>LR134350.1|VEG29998.1|2924169_2925765_-|Uncharacterised-protein
MTSQHDEVTAQASGEARRAFQVAVQVARFLADQRARSLERARRRSLAQERAVRDTIERQRRLAEPVLRRGMDDRFWDAAQPKDAAYVHGVAVRFEQVDPLARMVVDRCRDEARRRWDVDLDDTTTTRAEDLDGAVAADVAPILEDEEDVDLRTALDQTAEQQETHQGRTKEPAKEQPHGQGPTADDARRTDPPAVGHETADGTVEETGASTVTASELSADENTAWRWFTSHYDPTRTMPDQDDAHRRAWAHSTWAAMAAEGIDLDHPPAIEPLTGDARDSWRSQDGASAQVADALGVDPAHVRGRVDPRSLSPLRRSWEIEQAGAWPELSQWDQTFQTSGSAALRSGYEPRLVGQAPTPGRYTALTRQAAAAEARQAGMDVGTYLDHLQPLQRRGLISTHTSGAGKEGTETHDQLALAASYRVAYARRSALERPDWSIRRARAADRATSFQDGSSRQPAWDSTQARQAWAETQLARGVDPEAVRAVATGDRALHEPASRATAHQSTTAKNGAADRPRVTAKQALHGQDQQM
>LR134350.1|VEG29997.1|2923745_2924132_+|Uncharacterised-protein
MSTPKDTAPPELQFSTLEIFVEDFVAVVFDRSISPTQTCWCPQWWKHAEAVFDLMALWQSFEHMHVADGPTWSARWLTLFAYPIMDRLTSPAGPFRACSPAKGHNTQPDNPGGVLPCDKPDEGLFTPR
>LR134350.1|VEG29996.1|2921853_2923719_+|Uncharacterised-protein
MIAAITEGGSTAGLMNYLAGPGRFNEHESPHVVAGSGVVERRWGQWEDLSTSQAYEIARRLDQFMTETGVRPMGSRRVFNQETGRRETVPGPVANHVWHCSLALHPDEGPLSDQEWAAIARDFMTRMGFTGADGKAECRWVAINHGQAGNGGDHIHIVAVTVREDGTKWSNWRDQTRAQKAVNAIEHAYGLYVIEAREHARGARADSAADLRASARRGRARTDRRVLEERVRAAAVAADTEVDFVVRLRELGVRARPRFAAGRTDVVVGYSVALHARRGEHTLWYAGGKVARDLSLPRLRARWPDTPHSAQQAVDAWRQAWRGMPARQVAQRAQLEACAQALELYDVALREVDPRDPVSLADATRDVAGLLSAQAMACRNGDAAELLARAARTAGRAAQTHRRPAPVAAAPAAVSLAASLALSAAANRSGDVSVLTVQTLALLDTLVEVYRVAGQARTADEMLEHATAALAAVHPSSSRRPRAVDRGHSLLGALAGTAGPVQTHSAPATGEQAAGPPGGRAGSERATVPEVAGGMSVQQADRIRMVVAAAAPVTGAGAPSQQPVEGDHDVRRAGVQRDEHELERVRRVMGLALPGGEDSKVQETSPRPAAPGHHPGQGHTL
>LR134350.1|VEG29995.1|2921449_2921857_+|Bacterial-mobilisation-protein-(MobC)
MSGTGSDARRRPRHDLRRSARVRDGVPRSRLTVYLTPEERALLEARSVSSGEAMAKILVDSALHPVAVEGVGGAGELVAQLRDYRRQLVGVATNLNQIARHANTVSEIPSGFDAVVAKVLRLHDDIDDILAGVRR
>LR134350.1|VEG30006.1|2934244_2935366_-|Uncharacterised-protein
MTGVGPRVSWVMWSRGLEGLTATQCLVVGELARLADWRGETVCPVSHLVEVTHRTRRSVHNALRGLERRGLVDCRARWRADGSQASSSRRLVALAAVADFEAVKAVDEASRDGAGEVEADDLVEPDGPVIARGDDQGLREAIVRAVEEAWVGPAARLVARSMLVVVGQQFRAAVQRGVDFAFMEVDESRWDTASWAWETLRVGADVIARARSPWAMWANNTLRATSSRNWPVPEGVVVEELDAAGPAASSMVWGPGDAAGMEAAALDDFGSVLEGMVEALVAAGMGEAVAWAGTLRVVELSMRGASRRHQLAAEDVRLADLGVSPRCARAWMTLLVGSRRGASPSVLGLSEQDLAERASQVAAAYAEDLAATW
>LR134350.1|VEG30007.1|2935362_2936472_-|Uncharacterised-protein
MSVVASAWAWSVRGAGPMPKLVLAALADQADDDGWCWPSQATVAERCEMGERTVRRHIATLRDLGLLTPVARSSTWGRRSNGYQLHIGAQVDESLESRQPAKLAGCGEPVDNSPVDNLPEEEVFVENPATGQSGLLRNRPDWPVAQPANGGRPQEANGGRPQEANGGRLHSIQNHQLNHQTRPDQEVTSPAWLETETDSVGSGPGGVGPSSGEPAAAAPSASTETRRLIATCLPEHLRALDAAGARTVAGMLGQRLAAGWRPADIRSVMDQPLPDRVGRLSSLVAHRLRANVDPALAPRPQSVDQDAAHEERARRSEELAGTSRRGEGTDDRWAWAQVRGEMPGASRLEQAMAVIELVGQREAREGVAS
>LR134350.1|VEG30008.1|2937497_2938805_-|Manganese-transport-protein-MntH
MSDAVQAIVERHTPHRAPSPARHRLLALLGPAFVAAVAYVDPGNVAANITAGARYGYMLVWVLVASNAMAVIIQYQSAKLGIVTGRSLPQLLGARVGRPARLAYWAQAELVAAATDLAEIIGGAIALHLLVGLPLPVGGAVIGLVSMLLLALQGRRSQRPFEAVVVALLVVVTVGFVGGLVVAPPDWGAAAAGIVPRLRDTGSLLVAASMLGATVMPHAIYLHSSLVRDHHYASGEHETPARSRAQETDSPTARLIRATRVDVVWALAVAGAVNIALLLLAASALTGETGTDTIEGAHAAITANLGPVVGVIFAVGLLASGLASTSVGAYAGSEIMAGLLHVRVPLLVRRAVTLVPALVILTSGAEPTWALVLSQVVLSFGIPLAVIPLAALTGSGQVMGPWRDGALLRWTTRAVAGLIVTLNLALVVLTLTGTG
>LR134350.1|VEG30009.1|2939102_2940419_+|enterobactin-exporter-EntS
MRALYLLVAGSFVNSLGAGMTAFALGVHVHSATGSATAVCLVQLCALAPLVVLAPAAGVLADRHDRRLVMVVGDGGSIGGLLIVLVGLGGSGGLGVICVGALVSSCLSALTEPALRATVTELVPRSGYLRASGMLQMASAAKFLVAPIAAGALYGLVGARGIVVVDAATCLVTVGCSLAVRRAVGAVAPREAEAGLRARLSEGWREVVGREAVRTLVLLMAVVTFAMGAVQSLVKPILLPVGSAGAVGLAETVAAVGLLAGSALVAARPSADPVRLLVAGLVGAGAAMTAVCLRPGLLWFAVTGALLFTALPACNAGADALVRSRIPDGVQARAWGLVSVLSQSGYLLAFAVVGPVADHLTEPLMADGGALAGSVGLVTGTGPGRGSALLVSVLGALVLGVAAVTHRRGATLSVAGSPHPPVRHSAVRTAEGASSDRG
>LR134350.1|VEG30010.1|2940511_2942188_+|Arginine--tRNA-ligase
MTPEELAQAIRTVLTSAVDDGSLDLPVEEVPLPRVERPRHRDHGDWSTNVAMQLAKKAGTTPRALAELLADRLGGIDGVAEVEVAGPGFLNIRLDAGAAGELARSVVEAGESYGRNETLAGEHVNLEYVSANPTGPVHLGGARWAAVGDSLARILAACGATVTREYYFNDHGTQIDRFAASLLASARGQEPPEDGYGGAYISEIASRVTADETAAGRPEPAGLEDEAALEVFRSRGVELMFDAIKAELHAFRSDFDVFFHEDSLHTSGAVTRSIGELRERGVIEERDGATWLRTTDFGDDKDRVLIKSDGNPAYFAADTAYYLDKRSRGATCSIYLLGADHHGYVGRMMAMCAAYGDTPGVNMQILIGQMVNLVKNGAPVRMSKRAGTIVTLEDLVEAVGVDAARYALARSSMDSMIDIDLDLLASSSNDNPVYYVQYAHARTRNVARNAAEHGVSREAGFDPAALDDPADAALLGVLAQFPAVVAQAAQLREQHRVARYLEQLAAAYHTWYGATRVTPRGQDPVTPGHVARLWLNDAVGQVIANGLGLLGVDAPDRM
>LR134350.1|VEG30011.1|2942216_2943683_+|Diaminopimelate-decarboxylase
MSDTTAPTDEAPLGDLGAPEPDERPDLWPSTARRGADGALEIGGRGLEEILAQAPTPVFVLDEADLRARAATWSAVMAEEFWPRYGMNGGEAYYAGKAFLTTRVARTVLTEGMGIDTASRVELAVGLAALQAVDGQGATSRATRLGLHGNGKTLAEISVALHHRVGHLVLDSLEEVGLAAQAVRDLRAAGVYAPDETGSVMVRLTTGVHAGGHEHISTGHEDQKFGISVATGAALEACRAVVAAPELTLHGLHSHIGSQILGHEGFVEAVGIVLRLRHDIAESTGVLCEEIDLGGGLGIAYTGLDPVPPSPADLARALAQAVRTGCQELGDGVPRVSVEPGRSVVGPTTVTLYTVTGLKTVELGPGASRLYVSVDGGMSDNLRPALYGSAYTALLANRRPDPAAGLVRARVVGKHCESGDVVVRDVDLPGDLAVGDVLAVPATGAYGRSMANNYNLFTRPGVAWVADGEQGWVLRPETIEDLLRLEGD
>LR134350.1|VEG30012.1|2943947_2944262_+|Uncharacterised-protein
MRLPASYSHGMDAMCSSLEVPPPAWSPAAAARRHGARREGAAWVLATGALMALVLAVAAGPGLGQSPATAVVVIALTGWGLLVARLVHRSRPRDGQDGSGIRRH
>LR134350.1|VEG30013.1|2944286_2946020_-|Iron-import-ATP-binding/permease-protein-IrtB
MITRFAHHLGPGSHLRGLVATHLLAGLLQGMALGMLIPFLRALLSGEEPVGWLVAIGVTAGLSALIGALATVRGYEIASYDVCGRLIRMVGDKVQHLPLGWFDASSVGRVTTATSTDVHVLSHLPSMVLPQIASTTGAATGVAVMALAHEPIMGVAMVITVPLCAWCLRWLRRCVVQEFEAHEAAQARLSSRMLEFARLQAVLRSTGSCRDGWEPLETELDEEHRASARAMTAKGPATTVFHLSVEAAMIVAVGAGLSQLLGGHLDAAAFAALALMAVRFAEPVGMLAMYVDPLHEADVALSSIGEILDAPILPEPEEDAGAPTAPYDVVLNQVSFGYSPGAPVLRDVSLRLPAGSVTALVGPSGSGKSTLLRLVARFWDVDAGEVSLGGVDVRRIPTAELMDAVSIVFQDVYLFDTTIEENVRIGRPGATDEEVRVAARRAGLEEVVDRLPAGWDTRVGEAGGALSGGERQRVALARAFLKDAPILLLDEVTSALDGANEAAVTRAMEELSRGRTVLVIAHRLTTIRGADRIVVLTDGRVEAVGSHEELYATAGTYRRFWEDQTAVDRWRLVRAGR
>LR134350.1|VEG30014.1|2946016_2947819_-|Iron-import-ATP-binding/permease-protein-IrtA
MTPTPGARPEAAARPDAAVEHEQTPASNRELAVLLRPVAPSIALAFGCGLVAAAAGLLPAVGVTTLSEHALAGTLTPATAWPWLAGIAVGLLGGHTAYMLGTGHAHRVEASFRTDLRRRVARLMTRVPLGWHTEESSGRVRTALSEDTAKIHALIAHLGSDLGLGIGAPVVGLAYLATRSWVFTLVMLLWLLLIVSISSVLATRTSRDSTARFFESEKQLASATVEMVDGITTVKTFGLTGSLFHRFSGALDEYTTASHEWMRGPGRPMAVLTALLSPAATTVPIIIAGWVLVRQEVIAPVDILPFLLVGVGLPSGLINLSTLGNYLIQARDAARSISALLAEPVLAEPLHPEPVRADAGVGVDIDHVSFRYTESGPLVLDDVDLRLEPGTVTAVVGPSGSGKTTLVRLVARFWDVTAGAVRVGGTDVRRASSQDLLSHVAVVLQEGGILTGTVSENIGLAKPVASQEQIEAAAHAARIHDRIIKLPHGYDTVLGTEGAHLSGGERQRIALARAFLADAPVLLLDEATAHADPHSEREIQQALARLAQGRTVLVIAHRLATVVAADRIVVLDHGRVVQEGTHDQLLAVEGTYRTLWEAQQ
>LR134350.1|VEG30015.1|2948018_2949314_+|Uncharacterised-protein
MIVVMADSDREYRRAFYRALNVHQGAAGLSDEEEFERYYVPVYGQDDGPAGPDLVKEIATAIDFTTGGSVQLLSGYRGAGKTTELLRLCRELDPETYVPVYWDVEDYFNTELPLEEGAFLVGLAAGFVASCKEAEIPEDGLGTRLKQFLDRIDVTAGLGVGAAAGSVALNVKVALQDDESFRAQVEEALRSNRRRFRQEVHAFFEEMVDAMPGGRTPVFVVDSIDHYRGSASTFDEVRESVESLFSVYASELMLPRMHVVYTVPVYARPAGWDGQIWPVLNVKVRERDGSDCREGIDLLREVLERRAPGGDLERLLGNEVERVIKNSGGLFRDLFRLVSALLLKDGPLPVSRTEIDSAERRERSQLVAGLTQEQWEILQSVHRTHQLLPSRDRAADAWSLHRLGNVLCYRNGAVDWFGVRPLLDPLLTERA

Crispr_ID: LR134350_18

• CRISPR_ID: LR134350_18
• CRISPR_location: 3060448-3060539
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134350_18

Consensus_repeat	Method
GGTCGTCCCGAGACGCGTGAGGTCGTGCC	CRISPRCasFinder

spacers of LR134350_18

>18.1|3060477|34|LR134350|CRISPRCasFinder
AGGCGCAGCATCCTGGGCGCGGGACCCGGCACCA

CRISPR arrays and Neighbor proteins around LR134350_18

CRISPR arrays

The CRISPR arrays of LR134350_18

>merge|LR134350|18|3060448-3060539|CRISPRCasFinder
GGTCGTCCCGAGACGCGTGAGGTCGTGCCAGGCGCAGCATCCTGGGCGCGGGACCCGGCACCAGGTCGTCCCGAGACGCGTGAGGTCGTGCC

>LR134350|18|18|3060448-3060539|CRISPRCasFinder
GGTCGTCCCGAGACGCGTGAGGTCGTGCC	AGGCGCAGCATCCTGGGCGCGGGACCCGGCACCA
GGTCGTCCCGAGACGCGTGAGGTCGTGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG30103.1|3066923_3067601_+|Putative-osmoprotectant-uptake-system-permease-protein-yehY	unknown	unknown	gnl|CDD|224095
LR134350.1|VEG30087.1|3049257_3050076_-|Transposase-and-inactivated-derivatives,-IS30-family	unknown	unknown	gnl|CDD|225382
LR134350.1|VEG30086.1|3048259_3048667_+|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl|CDD|225197
LR134350.1|VEG30102.1|3066255_3066927_+|Putative-osmoprotectant-uptake-system-permease-protein-yehY	unknown	unknown	gnl|CDD|224095
LR134350.1|VEG30096.1|3060640_3061492_-|3-demethylubiquinone-9-3-methyltransferase	unknown	unknown	gnl|CDD|226383
LR134350.1|VEG30089.1|3052412_3053222_+|FMN-reductase-[NAD(P)H]	unknown	unknown	gnl|CDD|380322
LR134350.1|VEG30097.1|3061619_3062402_-|Soluble-cytochrome-b558	unknown	unknown	gnl|CDD|215141
LR134350.1|VEG30104.1|3067597_3068575_+|Substrate-binding-domain-of-ABC-type-glycine-betaine-transport-system	unknown	unknown	gnl|CDD|270324
LR134350.1|VEG30091.1|3053733_3054513_-|Glycerol-3-phosphate-regulon-repressor	unknown	unknown	gnl|CDD|224268
LR134350.1|VEG30094.1|3057982_3059047_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|340831
LR134350.1|VEG30095.1|3059205_3060285_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|380141
LR134350.1|VEG30088.1|3050675_3052103_+|Fumarate-hydratase-class-II	unknown	unknown	gnl|CDD|234779
LR134350.1|VEG30090.1|3053319_3053709_+|Predicted-membrane-protein	unknown	unknown	gnl|CDD|377753
LR134350.1|VEG30092.1|3054695_3055088_+|Predicted-enzyme-related-to-lactoylglutathione-lyase	unknown	unknown	gnl|CDD|319905
LR134350.1|VEG30093.1|3055259_3057986_+|Putative-K(+)-stimulated-pyrophosphate-energized-sodium-pump	unknown	unknown	gnl|CDD|234827
LR134350.1|VEG30101.1|3065371_3066259_+|Glycine-betaine/L-proline-transport-ATP-binding-protein-ProV	unknown	unknown	gnl|CDD|213262
LR134350.1|VEG30098.1|3062497_3063556_-|NADP-dependent-alcohol-dehydrogenase-C-2	unknown	unknown	gnl|CDD|176186
LR134350.1|VEG30100.1|3064717_3065296_-|transcriptional-regulator,-Acidobacterial,-PadR-family	unknown	unknown	gnl|CDD|224609
LR134350.1|VEG30099.1|3063600_3064692_-|putative-alcohol-dehydrogenase	unknown	unknown	gnl|CDD|176205
LR134350.1|VEG30105.1|3068556_3069228_-|Dihydrofolate-reductase-type-3	unknown	unknown	gnl|CDD|365932

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG30103.1|3066923_3067601_+|Putative-osmoprotectant-uptake-system-permease-protein-yehY	gnl|CDD|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	3.44812e-42
LR134350.1|VEG30087.1|3049257_3050076_-|Transposase-and-inactivated-derivatives,-IS30-family	gnl|CDD|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.60965e-75
LR134350.1|VEG30086.1|3048259_3048667_+|Uncharacterized-protein-conserved-in-bacteria	gnl|CDD|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	1.13475e-37
LR134350.1|VEG30102.1|3066255_3066927_+|Putative-osmoprotectant-uptake-system-permease-protein-yehY	gnl|CDD|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	1.0612e-37
LR134350.1|VEG30096.1|3060640_3061492_-|3-demethylubiquinone-9-3-methyltransferase	gnl|CDD|226383	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown].	8.70372e-44
LR134350.1|VEG30089.1|3052412_3053222_+|FMN-reductase-[NAD(P)H]	gnl|CDD|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	1.32891e-70
LR134350.1|VEG30097.1|3061619_3062402_-|Soluble-cytochrome-b558	gnl|CDD|215141	PLN02252, PLN02252, nitrate reductase [NADPH].	1.98868e-17
LR134350.1|VEG30104.1|3067597_3068575_+|Substrate-binding-domain-of-ABC-type-glycine-betaine-transport-system	gnl|CDD|270324	cd13606, PBP2_ProX_like, Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold. This group includes periplasmic substrate-binding component of ABC transport systems from gram-negative and -positive bacteria that are involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.14275e-118
LR134350.1|VEG30091.1|3053733_3054513_-|Glycerol-3-phosphate-regulon-repressor	gnl|CDD|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.39337e-63
LR134350.1|VEG30094.1|3057982_3059047_+|Uncharacterised-protein	gnl|CDD|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	0.000188929
LR134350.1|VEG30095.1|3059205_3060285_-|Uncharacterised-protein	gnl|CDD|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	2.81006e-06
LR134350.1|VEG30088.1|3050675_3052103_+|Fumarate-hydratase-class-II	gnl|CDD|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
LR134350.1|VEG30090.1|3053319_3053709_+|Predicted-membrane-protein	gnl|CDD|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	9.93113e-22
LR134350.1|VEG30092.1|3054695_3055088_+|Predicted-enzyme-related-to-lactoylglutathione-lyase	gnl|CDD|319905	cd07241, VOC_BsYyaH, vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YyaH. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.22564e-52
LR134350.1|VEG30093.1|3055259_3057986_+|Putative-K(+)-stimulated-pyrophosphate-energized-sodium-pump	gnl|CDD|234827	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated.	0
LR134350.1|VEG30101.1|3065371_3066259_+|Glycine-betaine/L-proline-transport-ATP-binding-protein-ProV	gnl|CDD|213262	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter. OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.79226e-119
LR134350.1|VEG30098.1|3062497_3063556_-|NADP-dependent-alcohol-dehydrogenase-C-2	gnl|CDD|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.37732e-169
LR134350.1|VEG30100.1|3064717_3065296_-|transcriptional-regulator,-Acidobacterial,-PadR-family	gnl|CDD|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	8.052e-21
LR134350.1|VEG30099.1|3063600_3064692_-|putative-alcohol-dehydrogenase	gnl|CDD|176205	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	1.00467e-86
LR134350.1|VEG30105.1|3068556_3069228_-|Dihydrofolate-reductase-type-3	gnl|CDD|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	3.11864e-42

Protein sequences

>LR134350.1|VEG30095.1|3059205_3060285_-|Uncharacterised-protein
MTAALTPPPSAPDGALVLPLVVQGSSQGPSLPASAVTVKRGQHLVPRSSPPSWRQREEVSLARLVAVQRTNPRAVLTHESAALLHGAWLRSSEPDVHLTQHTRPALTRSPLPRVVYGGTRAWGRSTGLPPAAAHGTLEAGRHVHLVRHHGLLPDSEITTIKGLRTSNLVRTLVDCLLDLPATDAFVVGDSLLRLGTQAHRLDRERVERTASRLRVQAADLLSRRGRRHNSRRARLMLGLLSPWSESPGESEMRFLLLVAGTPEPTLQHQVTTGDRQWFIDAAWPHALIGLEFDGRGKYAGSANTLYREKRRQEHLERRGWTILRVGWPDLKDPGLLISRVLATVPEGTVFTITPRTGIA
>LR134350.1|VEG30094.1|3057982_3059047_+|Uncharacterised-protein
MSTTSATIVIKRDDVVIDAEGRVVGHEAGDTLVRRLLRIFPGSVLVGPVARRGEDFDVLPLGMLDPGTSVVINMDVLDSPHVYQVMGAGSGRPRIMNFVWSALPSGHDEASTATAALSCALFPTFANSERTATEIRELVRRWTVPHLAEKARLAWVNLGFRLEHIQPRSPADPPVVLYPAIYLSRNKRPEVFLEVVGRARKQVPLKVEMRLHESHLISERAMEISRRDWVWVGPLTATRLSYWQALARTTAFLATAQEETYGLLYVEALGAGVIGVLPDRAWARALVPEGYPFIYGDAAQAERMLVRALREPEACRRELDACADGSFCEWIAAHHSDDAFDKAVSRRVREWFGG
>LR134350.1|VEG30093.1|3055259_3057986_+|Putative-K(+)-stimulated-pyrophosphate-energized-sodium-pump
MHSALGGRHVADPVHLSHRPSDSRNRRRRGPRHSLLARTRLPVLRRLLARPCRRAAGAAGAAVAVCAAAAGCAPGAGGRPDEDLGGGEASLALPDLSAARVGGVDGRVLLAVGVVICLVGLGFGLVTFLQMRRLPAHRSMLEVAELIYSTCQAYLVRQGRFLLILWVFITAVIVLYYKALVGFGWGRVGIVIAFSLLGMAGSYLVAWFGIRVNTFANARTAYAALPGMPYPVHRIPLRSGMSIGMVLISLELLMMLIILLLVPAQVAGACFIGFAIGESLGASALRIAGGIFTKIADIGADLMKIVFKIDEDDPRNPGVIADCTGDNAGDSVGPSADGFETYGVTGVALVTFVLLAVDDPGLQATLLVWLFSVRAAMIVAAWAAYALNSAWTRHRYARAERMNFEMPLSTLVWLTSVLCIALTYLTTWVVLGAYGPGLWLRLATIVTCGTAAGALIPELVKVFTSTRSRHVRETVKSSRQGGASLNILSGVVAGNFSAYWLGMTVVGLMTAAYLLGSHGLAQHMLAPSVFSFGLVAFGFLGTGPVTIAVDSYGPVTDNAQSVYELSRIERIDGIDDALRAETGIEPRWERAKLLLEDNDGAGNTFKATAKPVLIGTAVVGATTMIFSIIIGLTDHLTTGIDRLSLLHAPFLLGLVTGGAVVFWFSGASIQAVTTGANRAVSFIRGSIHLDSDAERASVEDSRRVVEICTQYAQQGMLTIFLAVFFATLAFAFAEPYFFIGYLVSIAVFGLYQAIYMANAGGAWDNAKKVVEVDLHMKGTALHDASVVGDTVGDPFKDTSSVALNPIIKFTTLFGLLAVELAVSLTEQGAGRLVTGLSVVFLLLSVFFVHRSFYAMRTTGAAGEELDSGEDEGPEPDEGHEAPPRGQDLRARSTEHVAGSGARRERARA
>LR134350.1|VEG30092.1|3054695_3055088_+|Predicted-enzyme-related-to-lactoylglutathione-lyase
MTRIDHAALWVSDLEESRDFYSEWFAGTAGPRYDNPRTGLSTYFLSFDDGARLELMTRPDVTGGPGGETCGWAHLSFCVPDEPAVDALATRLRDSGVEVVDGPRRTGDGYYELVLLDPEGNRVEVVAEWG
>LR134350.1|VEG30091.1|3053733_3054513_-|Glycerol-3-phosphate-regulon-repressor
MTGPIHRAPAERRRLILHSLNRTEPTSVEALARLTGASAVTIRRDLAELASHELVRRVHGGACLPAHRGARYPYSERAEEDLESKRVLARATAARVADGESLILDTGSTCELIAQLLAGRDLTVLALSLRTASVLAQVPGTRVSIPGGTVETETLSLLSVMSLDALRQFRADTAVLGACAASPTWGLCSTQSEDAAVKRAIMASASRVLLPTTSRKLTRTSAYRFGGVEDVTEILVTSDAPEAALDGLRAAGVVVSVCS
>LR134350.1|VEG30090.1|3053319_3053709_+|Predicted-membrane-protein
MLVTGLVLALLAAGLHVLIFYMESIAWEGPLARRTFGGTPQEARPHAFYAFNQGFYNLFLALQTIVGVVLTAMGHTAVGAALVLAGTGSMLAAALVLALASAPHRPAAVKQGTLPLLAVLATVAALLGA
>LR134350.1|VEG30089.1|3052412_3053222_+|FMN-reductase-[NAD(P)H]
MTSQTGPDPEPTNPVLALLRERRSVRVFTGEHVPDEDLEQILLATRQAPSSINAEGLSLVVVRDPERIRAVAEVAGGQPQVAGADVVVVFVVDFHRTEMAARLHRRQQVVETSAEGVLVGAVDAGIALATFQTAAHSLGYATTAIGGIRNNPAGLIELLDLPRGTFPVVASTLGVADPASLPRVKPRMPMASYAMEERYDPQAVADGARAYDEILRAWWDEQGMAQMPTWSQDTSARYSTYYYPTVAATMRAQGFRFLDGPQDDDAEAR
>LR134350.1|VEG30088.1|3050675_3052103_+|Fumarate-hydratase-class-II
MAPETSTSATTRTESDSMGTVEVASDRYWGAQTQRSLTNFDIGRETFVWGRPMIKALGVLKKSAALANAELGELPRDIADLIAAAADEVIAGELDAHFPLVVFQTGSGTQSNMNSNEVISNRAIEMAGGQMGSKAPVHPNDHVNRGQSSNDTFPTAMHIAVVDELAAMYPRIARLRDTLDAKAAQYADVVMVGRTHLQDATPITLGQVFSGWVAQIDFALDGIRYADSRARELAIGGTAVGTGLNAHPDFGALCARRISEETGIEFTQADNLFAALGAHDALVLVSGALRVLADALMKIANDVRWYASGPRNGIGELVIPENEPGSSIMPGKVNPTQCEAMTMVATKVFGNDATVGFAGSQGNFQLNVFKPVMAWCVLESIQLLGDACVSFDENCAYGIEPNLERIKANLDTNLMQVTALNRHIGYDKASKIAKNAHHKGLSLRESALELGFVTDEQFDAWVVPADMTHPSAAQD
>LR134350.1|VEG30087.1|3049257_3050076_-|Transposase-and-inactivated-derivatives,-IS30-family
MLDSNDQLRALVVQGLRQRWSPQQISRRLAADHPERDDLRVSHETIYQSLYVQGRGTLRAELGRHYRLRTGRSRRVPRSALAGPLASRPWLADARISTRPAQVADRAVPGHWEGDLVMGAGNRTAMITLVERTTRLVLIAPLLTDHTATTVATVLETMIKGLPRSMARSLTWDQGGEMAQVARFRTATNLEVYFCDPHSPWQRGTNENTNGLIREFFPKGTDLSTYPLHAFEQAQHLLNTRPRQTLDWATPAEAFNRLLQKTEHDTTIALTT
>LR134350.1|VEG30086.1|3048259_3048667_+|Uncharacterized-protein-conserved-in-bacteria
MITAMNGDDLRETAHSVAQELPGSELTRPFGPDWDVYKVRGKVFALLTRSAGPQMLTVKADPEDGEALRRQYADIAPGYHMNKRHWVTLTPGESISPGLVREVLTISYLLVVEGLPRARRPVDPAAYAEAAGLAG
>LR134350.1|VEG30096.1|3060640_3061492_-|3-demethylubiquinone-9-3-methyltransferase
MTQRIMPAIWCDGTAFEAAEFYTRVFREAHVVDQAPGLAATVELHGTRITLINGDDTYSPNPSISGLLNFDPLLFGGQEQARAYLDELYAALSTGGVLMELGEYPFSSRYAWVRDRFGFTWQLMLTDPAGEPRPFVVPSFMFGSTNHGNAQEATQGWIDLFDDSARGTTHLYGPDCPLEEGTVMFTDFTLLGSWFAAIDAGTYHSFTFSPGVSVIVSCRDQEEIDRYWAGLSAVPEAERCGWCVDRWGVSWQVVPDTIGELMADEATRSLVLEMGKIDLRRLP
>LR134350.1|VEG30097.1|3061619_3062402_-|Soluble-cytochrome-b558
MDLDLPLHPLVVHAPVVLLPLTALGVVVLAVQKRRAPQLAYAVLGLIVLAVLATGGSVLSGNALAELLGFEPERHERWGLLLAGASVLYLAVAGPWLWKVARADGRADAPRRPWALASAGLAVLVAALTVLAGHSGAELAWSDVGASPDSPSGTAPTGPGDPVGAGASTSVAPTPDPGSSSTATVYTMEDVARHSTAESCWTVIDSTVYDLTDWVSQHPGGQEAITGMCGTDGTAAFTSEHGGQAEPADALAGYAIGTLG
>LR134350.1|VEG30098.1|3062497_3063556_-|NADP-dependent-alcohol-dehydrogenase-C-2
MPDVLAYACDDRTTQFHRTTITLPEPGPHDIYIEVRYAGICHSDIHTAREEWGPARYPLTPGHEIAGVVARVGEAVTRYAVGDRVGVGCMVNSCRKCEYCTDGHEQFCTGTPGGLPGTLWTYGPDAQGNPTAGGYAQGFTVSEDFACRIPDSIPFETAAPLLCAGITTYSPLKRYGAGPGTRVAVVGMGGLGHMAVQISAAMGATTAVISHGRSKEADARRFGATEFYATSEDGTLEALAGSFDLIVCTVGADDLDYTALVRTLRPFGTFVDVGLPEHPSQIHMAALCNGNKAMAGSQIGGIAQTQEMLDFCAEHGLHPQVEIIGGQDITSTYDKVVGSQVRYRYVIDTSTF
>LR134350.1|VEG30099.1|3063600_3064692_-|putative-alcohol-dehydrogenase
MSLVTEPAPVPAPATMRAAVLRAPGIDNLVVTDLPVPEPGPGQVRLKVLAFGLNRSEYHSVTGLAEGMSFPRVLGIEAAGLVDLDPEGLLPHGTQAATMMGGMGRIVDGGYAQYVVVPRSQVITFSSDLPWEVIGSLPETLQTAHGSLTTGLDLRPGQSLLVRGGTSALGLAVAALAADAGCRVLSTSRRPEGVALLESRGLEGLHDTGTVNEAVRDRVPGGVDAVLELVGTPHPARLPGGHRGARHRVLHRDALGHLDYRRLLPHRLDPQRGASDRLFGPGPRPSGHRAPAGPGQDRRRGPRPHADALLPARGDRPRPPGPGRGQAHRQARRAALGLSLGAPGHAAGPEHPHPCHWPPPAGG
>LR134350.1|VEG30100.1|3064717_3065296_-|transcriptional-regulator,-Acidobacterial,-PadR-family
MYCDVMLDLKILGFLDEGPLHGYELRRRIEELDGPGTHLSEGTLYPALTRLENAGWLVRTEEPGARGRSRRRVEITPAGRQRLHQILRDPDEGTLTCLPRFLVVLAFLSRLPDPREREEVLRRRLAILQAPAPSFFRNADGTPRRAVEEPDPFRRGMARIAGATRREEAAWLRETLGAPDRPSAAPTAPEPT
>LR134350.1|VEG30101.1|3065371_3066259_+|Glycine-betaine/L-proline-transport-ATP-binding-protein-ProV
MTTRDEGTAVARSAVAIEFDAVTKRYPVRGRTDPAPAVDSFAAVLPAGSLTVLLGSSGCGKTTLLRMVNRMVEPSSGRVLLDGHDVRDSDPVALRRSIGYVMQNAGLLPHRRVLDNIMLVPRLQGWDRAAAQDRAHELMDLLGLSGALASRYPHELSGGQAQRVGVARALAADPGVLLMDEPFGAVDPLVRRELQRELIRLQDELAKTIVFVTHDVDEALALGDEIIVLREGAQVAQRGTGSELLAAPADDFVARFLGVDDPHRALRLADVAGDRVVVDRSGRAVGRLEAAAVSA
>LR134350.1|VEG30102.1|3066255_3066927_+|Putative-osmoprotectant-uptake-system-permease-protein-yehY
MTWFLANAPQVGSYLVDHLVQAVPAVVASLVLAIPLARLAQRVRGLRALVVAGSSLLYAVPSLALFVILPAILGTGIRDTLNVVVALTLYGLALLVPAAVAALDGVDASVLDAASATGMSERRRFLTVELPLAGPAVLAALRVVTVSTVSLTTVGAVLGVRSLGWLFTDGLQRGIMAEVLTGVLATVGLALVLDALVVALGRAVMPWTRARGPEPAGRREAGQ
>LR134350.1|VEG30103.1|3066923_3067601_+|Putative-osmoprotectant-uptake-system-permease-protein-yehY
MNHLLAAVAYILDPASWQGALGIGRLVLQHLWYSVLGVGAAGLIGVPLGWWVGHTGRGRGVVVALSGALRALPTLGLITLLALALGIGLGAPVIAFVVLALPSVLAGAYTCVESADPAAVDAARANGMSEIAILARVEIPLGAPQLVGGLRSASLQVISTATLAAYTGAGGLGRLMFLGLKTQDYAMMLASALLVIALALVSETVFGLLQRSAAPAGALRRKDSS
>LR134350.1|VEG30104.1|3067597_3068575_+|Substrate-binding-domain-of-ABC-type-glycine-betaine-transport-system
MTLSRPTRPTGLTSLTRPGSSVSTTRRRALGALGLSACGLALTACSSRDPFAQDGQETSGALVVGSQQYYSNEIIAELYAQVLEEAGFEVERQFRIGQREVYLPELVSGAIDVIPEYEGNLLQFYDADSGARDAASVQAALLTVLPEGLTVLDPAQATDQDSYTVTRALAQEHSLSSIADLTALGRTVVVAANSEFATRPYGPEGLKSVYGVDARVEPVEDSGGPLTLKALLDGQADAADIYTADPAIEDNDLVVLEDPEGLILPQRVTPLVVSSLATGAARAIDSVSAVLTTDELRALGARSTGEQLDAATIATDWLRAQGLVA
>LR134350.1|VEG30105.1|3068556_3069228_-|Dihydrofolate-reductase-type-3
MSSVRAVEGAGTSPSRPERLGMIWAQDHDRVLGAQGEMLWRVPADFRHFKDSTTGCGLVMGRTTWESLGGALPGRASVVLTTRPRWCAPGAVVARSLEEAVARARTELAALGPDPRTEGYRDLPRLWVIGGGSVYHEALKAGIVDLLVVSTLDLDAAGPALRRGVEPEELVLAPPIDPRTWRIDPRRSDAPEAWRPVSGDAAWRVDHWVRREAPDGSGQATRP

Crispr_ID: LR134350_21

• CRISPR_ID: LR134350_21
• CRISPR_location: 3148654-3148742
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134350_21

Consensus_repeat	Method
GTGACTCCTCTGAAATCCGGGCCGGCCCC	CRISPRCasFinder

spacers of LR134350_21

>21.1|3148683|31|LR134350|CRISPRCasFinder
CACGAGGCGGGGGCGCCGGTCATGCGCTCGA

CRISPR arrays and Neighbor proteins around LR134350_21

CRISPR arrays

The CRISPR arrays of LR134350_21

>merge|LR134350|21|3148654-3148742|CRISPRCasFinder
GTGACTCCTCTGAAATCCGGGCCGGCCCCCACGAGGCGGGGGCGCCGGTCATGCGCTCGAGTGACTCCTCTGAAATCCGGGCCGGCCCC

>LR134350|21|21|3148654-3148742|CRISPRCasFinder
GTGACTCCTCTGAAATCCGGGCCGGCCCC	CACGAGGCGGGGGCGCCGGTCATGCGCTCGA
GTGACTCCTCTGAAATCCGGGCCGGCCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134350.1|VEG30158.1|3143730_3144576_+|acetoin-dehydrogenase-E2-subunit-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl|CDD|223669
LR134350.1|VEG30151.1|3135452_3136046_-|Uncharacterised-protein	unknown	unknown	unknown
LR134350.1|VEG30155.1|3139253_3139784_+|SsrA-binding-protein	unknown	unknown	gnl|CDD|376590
LR134350.1|VEG30153.1|3136891_3137809_+|Cell-division-protein-FtsX	unknown	unknown	gnl|CDD|225088
LR134350.1|VEG30159.1|3146601_3148587_-|Putative-purine-permease-ygfU	unknown	unknown	gnl|CDD|274468
LR134350.1|VEG30152.1|3136188_3136878_+|Cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl|CDD|225438
LR134350.1|VEG30154.1|3137814_3139149_+|Glycyl-glycine-endopeptidase-ALE-1-precursor	unknown	unknown	gnl|CDD|223810
LR134350.1|VEG30150.1|3134733_3135369_+|Helix-destabilizing-protein	unknown	unknown	gnl|CDD|239942
LR134350.1|VEG30156.1|3139932_3143115_+|Lysylphosphatidylglycerol-biosynthesis-bifunctional-protein-LysX	unknown	unknown	gnl|CDD|235095
LR134350.1|VEG30157.1|3143111_3143738_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|377627

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134350.1|VEG30158.1|3143730_3144576_+|acetoin-dehydrogenase-E2-subunit-dihydrolipoyllysine-residue-acetyltransferase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.8275e-14
LR134350.1|VEG30155.1|3139253_3139784_+|SsrA-binding-protein	gnl|CDD|376590	pfam01668, SmpB, SmpB protein.	3.03454e-80
LR134350.1|VEG30153.1|3136891_3137809_+|Cell-division-protein-FtsX	gnl|CDD|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	2.49429e-48
LR134350.1|VEG30159.1|3146601_3148587_-|Putative-purine-permease-ygfU	gnl|CDD|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.10185e-159
LR134350.1|VEG30152.1|3136188_3136878_+|Cell-division-ATP-binding-protein-FtsE	gnl|CDD|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	6.1681e-115
LR134350.1|VEG30154.1|3137814_3139149_+|Glycyl-glycine-endopeptidase-ALE-1-precursor	gnl|CDD|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	7.80784e-31
LR134350.1|VEG30150.1|3134733_3135369_+|Helix-destabilizing-protein	gnl|CDD|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	4.85693e-23
LR134350.1|VEG30156.1|3139932_3143115_+|Lysylphosphatidylglycerol-biosynthesis-bifunctional-protein-LysX	gnl|CDD|235095	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX.	0
LR134350.1|VEG30157.1|3143111_3143738_+|Uncharacterised-protein	gnl|CDD|377627	pfam06197, DUF998, Protein of unknown function (DUF998). Family of conserved archaeal proteins.	0.000144434

Protein sequences

>LR134350.1|VEG30159.1|3146601_3148587_-|Putative-purine-permease-ygfU
MALGRRNPAHPSSPAATPAAGSTKDPVDAVPPLGQLTVLGVQHVLAFYAGAVVVPLVIASGLGLDAATTIHLINADLFTCGIATIIQSAGLGPRIGARLPLIQGVTFTAVSPLIAIGLAASGGQGGTGGLAAMYGSIIAAGLATFLLAPFFARLLRFFPPVVTGTLLTVMGTTLMSVSASDIVAWGAQAGQGQDSAALTVKGLAYALVTIALIVGVQRVFKGFMATISVLVGLVSATILAAVLGDADFSGVAQADAVGLTTPFFFGLPEFTVTGIVSMLVVMAVTAVETTGDVFATGEIVGRRITPPHIANALRADGLSTVLGGVLNSFPYTCFAQNVGLVRLTRVTSRWVVTCAGVIMIVLGLLPKAAAVVAAIPQSVIGGASLAMFASVAVVGIQTLGKVDMHDNRNAVIVSTSLGLALLVTFKPEIATVMPSWLAILFGSGVTIGALSAIVLNIVFFHLGRQQGPDVARVEGRAMSLETVNAMSAQEFVETFANMYVGATWPAARVYDQRPFASVAALRQAFEDIVLTASPAEHEALINGYSDVVDLLLDPEGDPRARLETASLALGALDDAQEAELRALGAAYREKFDRPLVMCVSRLADASQLIARGWNRVESSPTREARVALGEVVDIADERFDEMIADANPIRSAWARTFEQLD
>LR134350.1|VEG30158.1|3143730_3144576_+|acetoin-dehydrogenase-E2-subunit-dihydrolipoyllysine-residue-acetyltransferase
MPDRRYPDGHTVHTRDGSGPGIVLLNGCALAAVGWDEVIAALPGRRIIAVDRPGRRGTSCTALPTLAGETRFLADLLRQTGRGPVIVVAHSMAAFQAEALARTRPGLVAGVVLVDPAVTAGSRVRGRIGAELAWRAADLLLGHELVRRPVARIWRRGLKAQTVRPELIDTSRWRQTWASRQSLAAGTAEWMAFPAQAAELERLREAQKAPAPVGAVIVEAPPPVPLVEAAVLHASFAATRLRRLPGCRHLTMVDAPDQVAEEIRLAAEASAAQAPGAVRAD
>LR134350.1|VEG30157.1|3143111_3143738_+|Uncharacterised-protein
MRGRVLAVLVLVTYNSWLAWRLNGHPEALSGYLSELAAQDQPFQWFFRLGDLAAAVVFVAVAALGRRGWTPWLGHWAPRVAIGLLLVAVGTALDVVFNLPCAESRDAVCAATPSLARHLHEACSVLVSVSLVATIGMSAVGMAARGGWHVPARLTAGLAVVVAVLMVASVAAPAVAPGTQGPVQALQVLLCSGWIALLAWRLPGGRRA
>LR134350.1|VEG30156.1|3139932_3143115_+|Lysylphosphatidylglycerol-biosynthesis-bifunctional-protein-LysX
MRAQDPLTVRLLPRLLYGVALLALVYSLLGAVPGVRPVLDFIFLWVVPLPFIDWLSAVVALILAAGLDRRKRAAWVAMTVLAAGSLVLYALLLIAFISVDEPGLDIYGSLALNIAVLLGLLALLVIHRRSYPVRSRPGNIRRALGVFLLVSCTATAVAVALTLVLEGVGLEQVTGLVTGHSGPGWLRSLLGLGWAGAVLAFFWIIMRSQKEAGRMSLDEERRVRSLLAQFPADSLGYFGTRRDKSALLTEHGGVTYRVGQGVALASGDPLGDPSTWPSAARAFVRHAADYGWTPAVIGASEAGARAYVEAGLRALHIGDEAVLHCARFRLDALPEVRRAVRRLTGLGYTVRIRRHRSIPAEELGALAVLADQWLAGEAERGFSMALGRLADPSDGQCVMVEALFPDGDERGRVAALLSFAPWGGDGLSLDVMRRHPEADNGVTELMVSSVVAEGAEMGISRISLNFAVFRSAFAEGARLGAGPLRRLWRRVLLLASRWWQLESLYRSNSKYDPEWRPRLICYREGAELAQVALAMGVAEGFVTLPRWVAGDSGPQPRRAAEDSAELLALTAGSVARPSRVRPAGQLAPRLACREAMLAEGLEPYPPSVDVTATCAGAEGACTVAGRVLAIRDHGGVVFADLRDWSGDLQVVLETGGAGAQAVVSFRRLARIGDQVAVSGTLGASRTGTRSLLVRSWVMTSKALRPLPDKRRGIQDPQTLVRQRHLALITSPALRAMVTARSTAIQAVRGELLTRGYLEVETPMLQTVHGGANARPFRTHINAYNLDLYLRIAPELYLKRLMVGGMDRVFEIGRNFRNEGADATHNPEFTMLEAYQAHADYNVMKEVVRDLTLAAARAALGTTVVRGTVGGVEHEIDLAAPWRSVSVCEAVSEALGHRVDTSTPVERLREHAEALGLPVSPRWGWGELVQELYEHLAEASTVGPTFFTDFPAQTSPLTRPHRTEAQLAERWDLIIFGSEVGTAYSELVDPVIQRQRLTAQSLAAAGGDPEAMELDEAFLEALEQGMPPSGGLGVGLDRLVMMLTGSSIRETIAFPLVRPGR
>LR134350.1|VEG30155.1|3139253_3139784_+|SsrA-binding-protein
MSTRRDRTTKPTAGQRAKAAAHARTTVARNRRASHDYVLEDRYEAGLVLTGTEVKALRMGRASLTEAWVELDRHGEAWLQGAHIPEYLQGTWNNHSPRRKRKLLLHRSELARLAQRVQAKGYTVVPLELYFIGGRAKLEIALARGKQDWDKRQALREAQDNREAARAMAAANRRRG
>LR134350.1|VEG30154.1|3137814_3139149_+|Glycyl-glycine-endopeptidase-ALE-1-precursor
MRTGTSRPRPASRATRRAPRRRRLLAVVAALALGLAGAGMPAQADERQDAVDQQEEAERKQAEVTASLEGVSASLGQAYLDLQAAETALGTAQTELDAAEADLAAKEREQQLAADRLAVAEADLAAIEEEAQASQTNAEENSASVADLVVSTYQGDSAVTSWTYVLASESVDDLTQRASTMEIATGVQESVLSQAEAERAQDANRRARQDATTTRVATLKDEADAAEAAAQTARDDAQTRRDEVAALTAERQTAAAQFETEKAGLEAQQAQAAADAAAAAETIARIDAANQASAGYTGASSGEVAASSLGGGDIGHPITGSLVVASPFGYRIHPITGQSRLHAGVDLVAGQGVPQYAAVSGTVTHNINSSCGNGIFINGGVINGQSVVVAYCHLSQISVSNGAYVSKGQQIGLTGATGGATGPHVHFEVILNGTEVDPMTLPGF
>LR134350.1|VEG30153.1|3136891_3137809_+|Cell-division-protein-FtsX
MRFRFILSETFKGLSRNLAMTVSVVLVSFVSLLFVGASALLQTQISTMKGDWYDKVEVSVYMCPASSAEAACANGEATQEQIDDVEALINSDVLSSYVKSYTLETKAEAYERFMEAYGDTKIGRNATEEMMPVSFRIKLVDAEEYQVVAEQFTGREGVERVVDQRSTLEPLFLVMNRASWITGGLAAIMAVAAVLLISTTIRLSAMSRSKETGIMRLVGASNLFIQLPFMLEGALAALLGAVAAVGALWAGVHYVVDGWLASSISFTTAFIGTGDVLRLAPWLLLAAIILAAASSAFSLSKYTKV
>LR134350.1|VEG30152.1|3136188_3136878_+|Cell-division-ATP-binding-protein-FtsE
MIRFDHVSKVYKRGARPALDDVTIEVERDEFVFLVGASGSGKSTFLRLTLREERPTSGSVHVLGRDLSQISSWKVPKLRQEMGFVFQDFRLLENKTVLENVAIASQVIGKPRHYILSAVPEALDLVGLAGKEKRLPHELSGGEQQRVAIARAMVNRPKLLLADEPTGNLDPSTSVGIMRLLDRINRQGTTVVMATHDDEIVDQMRKRVIELKAGEVVRDQARGVYGSDR
>LR134350.1|VEG30151.1|3135452_3136046_-|Uncharacterised-protein
MPDALSPDESSDAPLPTPPSEPADPRGPGGPPIDLSAEVDLGSWARFTPDLAAFLDRRARAGHGAGTGLTVLLTAPAPVVGTDRPDSSEQTRSGLSGLLRRRRRREPSPEVPGVVLVVRDEGVEVVVPVLDARGRVLLGDRETSLLRALGWAGQGTEVMSRLLPGGAQAAETVTRVLIEVLGVAHPADLDWLVDAQP
>LR134350.1|VEG30150.1|3134733_3135369_+|Helix-destabilizing-protein
MSRQLDLVVQGVLGTRPSVVRTATGRPFCHFRVATTPSFRSRDGWRDGATMWFTAKAWGALAENLGHSLHKGDPVVLVGRLSQETWLNETGEHLDNVLTVSCGGHDLTWGESRFMRVTHAEEEPDDPSGAAPGQQAPSAGAQSMADGAAGPAPEGAEDPAEPLPDSHWQVAEPPAGAGAPDGQAGTPQDPGAQDGAPAATHGGLDYVLVGQ

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134350_3	3.15|1055353|35|LR134350|CRISPRCasFinder,CRT,PILER-CR	1055353-1055387	35	LR134350.1	1530554-1530588	0	1.0
LR134350_6	6.2|1451713|39|LR134350|PILER-CR	1451713-1451751	39	LR134350.1	1451546-1451584	1	0.974
LR134350_12	12.3|2127877|17|LR134350|CRISPRCasFinder	2127877-2127893	17	LR134350.1	357211-357227	1	0.941
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	LR134350.1	1391133-1391163	1	0.968
LR134350_14	14.1|2347739|33|LR134350|CRISPRCasFinder	2347739-2347771	33	LR134350.1	1519153-1519185	2	0.939
LR134350_18	18.1|3060477|34|LR134350|CRISPRCasFinder	3060477-3060510	34	LR134350.1	1538650-1538683	2	0.941
LR134350_19	19.1|3138089|19|LR134350|CRISPRCasFinder	3138089-3138107	19	LR134350.1	459599-459617	2	0.895
LR134350_19	19.1|3138089|19|LR134350|CRISPRCasFinder	3138089-3138107	19	LR134350.1	915495-915513	2	0.895
LR134350_19	19.1|3138089|19|LR134350|CRISPRCasFinder	3138089-3138107	19	LR134350.1	986673-986691	2	0.895
LR134350_19	19.1|3138089|19|LR134350|CRISPRCasFinder	3138089-3138107	19	LR134350.1	1492173-1492191	2	0.895
LR134350_19	19.1|3138089|19|LR134350|CRISPRCasFinder	3138089-3138107	19	LR134350.1	1986594-1986612	2	0.895
LR134350_19	19.1|3138089|19|LR134350|CRISPRCasFinder	3138089-3138107	19	LR134350.1	2938471-2938489	2	0.895

1. spacer 3.15|1055353|35|LR134350|CRISPRCasFinder,CRT,PILER-CR matches to position: 1530554-1530588, mismatch: 0, identity: 1.0

tgggcctccgacacctcgggcagctcgaggaacag	CRISPR spacer
tgggcctccgacacctcgggcagctcgaggaacag	Protospacer
***********************************

2. spacer 6.2|1451713|39|LR134350|PILER-CR matches to position: 1451546-1451584, mismatch: 1, identity: 0.974

tcgagggggccgaagctgccaccgccggggaggccggcg	CRISPR spacer
tcgagggggccgaggctgccaccgccggggaggccggcg	Protospacer
*************.*************************

3. spacer 12.3|2127877|17|LR134350|CRISPRCasFinder matches to position: 357211-357227, mismatch: 1, identity: 0.941

agggctggccgggggct	CRISPR spacer
aggactggccgggggct	Protospacer
***.*************

4. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to position: 1391133-1391163, mismatch: 1, identity: 0.968

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
cacgagacgggggcgccggtcatgcgctcga	Protospacer
******.************************

5. spacer 14.1|2347739|33|LR134350|CRISPRCasFinder matches to position: 1519153-1519185, mismatch: 2, identity: 0.939

tgctggccgtcgcccacttccacggcgtcacgg	CRISPR spacer
tgctggccgtcgcccactcctacggcgtcacgg	Protospacer
******************.*.************

6. spacer 18.1|3060477|34|LR134350|CRISPRCasFinder matches to position: 1538650-1538683, mismatch: 2, identity: 0.941

aggcgcagcatcctgggcgcgggacccggcacca	CRISPR spacer
aggcacagcatccggggcgcgggacccggcacca	Protospacer
****.******** ********************

7. spacer 19.1|3138089|19|LR134350|CRISPRCasFinder matches to position: 459599-459617, mismatch: 2, identity: 0.895

cccagaccgagctcgacgc	CRISPR spacer
cccagaccgggctcgtcgc	Protospacer
*********.***** ***

8. spacer 19.1|3138089|19|LR134350|CRISPRCasFinder matches to position: 915495-915513, mismatch: 2, identity: 0.895

cccagaccgagctcgacgc	CRISPR spacer
ccgaggccgagctcgacgc	Protospacer
** **.*************

9. spacer 19.1|3138089|19|LR134350|CRISPRCasFinder matches to position: 986673-986691, mismatch: 2, identity: 0.895

cccagaccgagctcgacgc	CRISPR spacer
cccgggccgagctcgacgc	Protospacer
***.*.*************

10. spacer 19.1|3138089|19|LR134350|CRISPRCasFinder matches to position: 1492173-1492191, mismatch: 2, identity: 0.895

cccagaccgagctcgacgc	CRISPR spacer
cccaggccgagctcgccgc	Protospacer
*****.********* ***

11. spacer 19.1|3138089|19|LR134350|CRISPRCasFinder matches to position: 1986594-1986612, mismatch: 2, identity: 0.895

cccagaccgagctcgacgc	CRISPR spacer
ccaagaccgagctcaacgc	Protospacer
** ***********.****

12. spacer 19.1|3138089|19|LR134350|CRISPRCasFinder matches to position: 2938471-2938489, mismatch: 2, identity: 0.895

cccagaccgagctcgacgc	CRISPR spacer
cccaggccgagctcgtcgc	Protospacer
*****.********* ***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134350_1	1.1|320900|24|LR134350|CRISPRCasFinder	320900-320923	24	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	273602-273625	3	0.875
LR134350_1	1.1|320900|24|LR134350|CRISPRCasFinder	320900-320923	24	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	278861-278884	3	0.875
LR134350_1	1.1|320900|24|LR134350|CRISPRCasFinder	320900-320923	24	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	284464-284487	3	0.875
LR134350_1	1.1|320900|24|LR134350|CRISPRCasFinder	320900-320923	24	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	173896-173919	3	0.875
LR134350_1	1.1|320900|24|LR134350|CRISPRCasFinder	320900-320923	24	CP054911	Pantoea ananatis strain FDAARGOS_680 plasmid unnamed3, complete sequence	169523-169546	3	0.875
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	KY000037	Agrobacterium sp. strain LBA4404 plasmid pTi_LBA4404, complete sequence	18240-18266	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NZ_CP026926	Agrobacterium tumefaciens strain 1D1609 plasmid pTi1D1609, complete sequence	158933-158959	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NZ_CP011249	Agrobacterium tumefaciens strain Ach5 plasmid pTi, complete sequence	100134-100160	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NC_002377	Agrobacterium tumefaciens plasmid Ti, complete sequence	100128-100154	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NZ_CP032920	Agrobacterium tumefaciens strain 15955 plasmid pTi15955, complete sequence	187079-187105	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NZ_CP033030	Agrobacterium tumefaciens strain A6 plasmid pTiA6, complete sequence	187079-187105	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NC_011982	Agrobacterium vitis S4 plasmid pTiS4, complete sequence	251685-251711	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NZ_KY000027	Agrobacterium rhizogenes strain CFBP2692 plasmid pTi_CFBP2692, complete sequence	68454-68480	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NZ_KY000031	Agrobacterium genomosp. 1 strain Tun198 plasmid pTi_Tun198, complete sequence	158721-158747	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NZ_KY000028	Agrobacterium genomosp. 1 strain CFBP2712 plasmid pTi_CFBP2712, complete sequence	51609-51635	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NZ_KY000030	Agrobacterium genomosp. 1 strain CFBP5767 plasmid pTi_CFBP5767, complete sequence	66326-66352	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NZ_KY000075	Agrobacterium vitis strain CFBP2681 plasmid pTi_CFBP2681, complete sequence	211754-211780	5	0.815
LR134350_1	1.4|321041|27|LR134350|CRISPRCasFinder	321041-321067	27	NZ_KY000061	Agrobacterium tumefaciens strain CFBP2413 plasmid pTi_CFBP2413, complete sequence	62362-62388	5	0.815
LR134350_3	3.29|1054423|33|LR134350|PILER-CR	1054423-1054455	33	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	228882-228914	5	0.848
LR134350_3	3.29|1054423|33|LR134350|PILER-CR	1054423-1054455	33	NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	116640-116672	5	0.848
LR134350_3	3.2|1054420|34|LR134350|CRISPRCasFinder,CRT	1054420-1054453	34	NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	116639-116672	6	0.824
LR134350_3	3.2|1054420|34|LR134350|CRISPRCasFinder,CRT	1054420-1054453	34	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	228882-228915	6	0.824
LR134350_8	8.1|1762341|31|LR134350|CRISPRCasFinder	1762341-1762371	31	NZ_CP035513	Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence	161030-161060	6	0.806
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1058743-1058773	6	0.806
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	910301-910331	6	0.806
LR134350_2	2.8|1053252|33|LR134350|CRISPRCasFinder	1053252-1053284	33	NZ_CP027794	Rhodococcus hoagii strain DSSKP-R-001 plasmid plas1, complete sequence	27482-27514	7	0.788
LR134350_8	8.1|1762341|31|LR134350|CRISPRCasFinder	1762341-1762371	31	CP054934	Nocardiopsis flavescens strain NA01583 plasmid unnamed1, complete sequence	100614-100644	7	0.774
LR134350_11	11.1|1939140|32|LR134350|CRISPRCasFinder	1939140-1939171	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	138711-138742	7	0.781
LR134350_11	11.1|1939140|32|LR134350|CRISPRCasFinder	1939140-1939171	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1674406-1674437	7	0.781
LR134350_14	14.1|2347739|33|LR134350|CRISPRCasFinder	2347739-2347771	33	NZ_CP026745	Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence	63863-63895	7	0.788
LR134350_15	15.1|2365761|33|LR134350|CRISPRCasFinder	2365761-2365793	33	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	305611-305643	7	0.788
LR134350_19	19.3|3138194|31|LR134350|CRISPRCasFinder	3138194-3138224	31	KM058087	Cronobacter phage vB_CsaP_Ss1, complete genome	33032-33062	7	0.774
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	284565-284595	7	0.774
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	318710-318740	7	0.774
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP041045	Paracoccus sp. AK26 plasmid pAK1, complete sequence	452787-452817	7	0.774
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	231923-231953	7	0.774
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NC_023316	Streptomyces sp. 14R-10 plasmid pZL1, complete sequence	79498-79528	7	0.774
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	46711-46741	7	0.774
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	476961-476991	7	0.774
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	670051-670081	7	0.774
LR134350_2	2.16|1053252|34|LR134350|PILER-CR	1053252-1053285	34	NZ_CP027794	Rhodococcus hoagii strain DSSKP-R-001 plasmid plas1, complete sequence	27482-27515	8	0.765
LR134350_3	3.5|1054634|34|LR134350|CRISPRCasFinder,CRT	1054634-1054667	34	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	200557-200590	8	0.765
LR134350_3	3.5|1054634|34|LR134350|CRISPRCasFinder,CRT	1054634-1054667	34	CP000664	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03, complete sequence	91085-91118	8	0.765
LR134350_3	3.5|1054634|34|LR134350|CRISPRCasFinder,CRT	1054634-1054667	34	NZ_CP031753	Rhodobacter sphaeroides strain EBL0706 plasmid p.B, complete sequence	104548-104581	8	0.765
LR134350_6	6.1|1451634|30|LR134350|PILER-CR	1451634-1451663	30	NZ_AP022335	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49c, complete sequence	132061-132090	8	0.733
LR134350_6	6.1|1451634|30|LR134350|PILER-CR	1451634-1451663	30	MH067976	Arthrobacter sp. strain ANT_H58 plasmid pA58H3, complete sequence	11913-11942	8	0.733
LR134350_6	6.1|1451634|30|LR134350|PILER-CR	1451634-1451663	30	NZ_CP045122	Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence	6970-6999	8	0.733
LR134350_6	6.1|1451634|30|LR134350|PILER-CR	1451634-1451663	30	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	272877-272906	8	0.733
LR134350_6	6.1|1451634|30|LR134350|PILER-CR	1451634-1451663	30	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	222882-222911	8	0.733
LR134350_6	6.1|1451634|30|LR134350|PILER-CR	1451634-1451663	30	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	279476-279505	8	0.733
LR134350_11	11.1|1939140|32|LR134350|CRISPRCasFinder	1939140-1939171	32	KR997933	Mycobacterium phage Madruga, complete genome	23322-23353	8	0.75
LR134350_11	11.1|1939140|32|LR134350|CRISPRCasFinder	1939140-1939171	32	JN991020	Pseudomonas phage Bf7, complete genome	38186-38217	8	0.75
LR134350_11	11.1|1939140|32|LR134350|CRISPRCasFinder	1939140-1939171	32	NC_023691	Mycobacterium phage Patience, complete genome	24203-24234	8	0.75
LR134350_11	11.1|1939140|32|LR134350|CRISPRCasFinder	1939140-1939171	32	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	276870-276901	8	0.75
LR134350_11	11.1|1939140|32|LR134350|CRISPRCasFinder	1939140-1939171	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2640449-2640480	8	0.75
LR134350_15	15.1|2365761|33|LR134350|CRISPRCasFinder	2365761-2365793	33	NZ_CP035502	Sphingosinicella sp. BN140058 plasmid p1, complete sequence	218583-218615	8	0.758
LR134350_19	19.3|3138194|31|LR134350|CRISPRCasFinder	3138194-3138224	31	NZ_CP044974	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence	58133-58163	8	0.742
LR134350_19	19.3|3138194|31|LR134350|CRISPRCasFinder	3138194-3138224	31	NZ_CP044977	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence	60681-60711	8	0.742
LR134350_19	19.3|3138194|31|LR134350|CRISPRCasFinder	3138194-3138224	31	NZ_CP015095	Pelagibaca abyssi strain JLT2014 plasmid pPABY4, complete sequence	92417-92447	8	0.742
LR134350_19	19.3|3138194|31|LR134350|CRISPRCasFinder	3138194-3138224	31	NZ_LR594693	Variovorax sp. WDL1 plasmid 5	4015-4045	8	0.742
LR134350_19	19.3|3138194|31|LR134350|CRISPRCasFinder	3138194-3138224	31	NZ_CP040824	Paraoceanicella profunda strain D4M1 plasmid pD4M1F, complete sequence	92290-92320	8	0.742
LR134350_19	19.3|3138194|31|LR134350|CRISPRCasFinder	3138194-3138224	31	NZ_LR594677	Variovorax sp. PBS-H4 plasmid 3	3940-3970	8	0.742
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	294987-295017	8	0.742
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	132216-132246	8	0.742
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NC_007764	Rhizobium etli CFN 42 plasmid p42c, complete sequence	237337-237367	8	0.742
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP020908	Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence	236555-236585	8	0.742
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	403183-403213	8	0.742
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1945376-1945406	8	0.742
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	389933-389963	8	0.742
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1945568-1945598	8	0.742
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1945565-1945595	8	0.742
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1945529-1945559	8	0.742
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	673535-673565	8	0.742
LR134350_2	2.2|1052823|36|LR134350|CRISPRCasFinder	1052823-1052858	36	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	274677-274712	9	0.75
LR134350_2	2.2|1052823|36|LR134350|CRISPRCasFinder	1052823-1052858	36	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1538580-1538615	9	0.75
LR134350_3	3.20|1055709|35|LR134350|CRT,CRISPRCasFinder	1055709-1055743	35	NZ_CP032828	Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence	176230-176264	9	0.743
LR134350_3	3.21|1055780|34|LR134350|CRT,CRISPRCasFinder	1055780-1055813	34	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	787841-787874	9	0.735
LR134350_3	3.31|1054568|32|LR134350|PILER-CR	1054568-1054599	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	584840-584871	9	0.719
LR134350_3	3.33|1055727|35|LR134350|PILER-CR	1055727-1055761	35	NZ_CP032828	Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence	176230-176264	9	0.743
LR134350_3	3.34|1055798|34|LR134350|PILER-CR	1055798-1055831	34	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	787841-787874	9	0.735
LR134350_6	6.1|1451634|30|LR134350|PILER-CR	1451634-1451663	30	NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	97961-97990	9	0.7
LR134350_6	6.1|1451634|30|LR134350|PILER-CR	1451634-1451663	30	NZ_CP039651	Azospirillum sp. TSA2s plasmid p1	77038-77067	9	0.7
LR134350_6	6.1|1451634|30|LR134350|PILER-CR	1451634-1451663	30	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	893119-893148	9	0.7
LR134350_8	8.1|1762341|31|LR134350|CRISPRCasFinder	1762341-1762371	31	NZ_AP019196	Aeromonas caviae strain GSH8M-1 plasmid pGSH8M-1-1, complete sequence	102328-102358	9	0.71
LR134350_8	8.1|1762341|31|LR134350|CRISPRCasFinder	1762341-1762371	31	NZ_AP019196	Aeromonas caviae strain GSH8M-1 plasmid pGSH8M-1-1, complete sequence	107422-107452	9	0.71
LR134350_8	8.1|1762341|31|LR134350|CRISPRCasFinder	1762341-1762371	31	NZ_AP019196	Aeromonas caviae strain GSH8M-1 plasmid pGSH8M-1-1, complete sequence	123217-123247	9	0.71
LR134350_8	8.1|1762341|31|LR134350|CRISPRCasFinder	1762341-1762371	31	NZ_CP047963	Aeromonas media strain MC64 plasmid pMC64A, complete sequence	118322-118352	9	0.71
LR134350_8	8.1|1762341|31|LR134350|CRISPRCasFinder	1762341-1762371	31	NZ_CP026407	Aeromonas sp. ASNIH2 plasmid pAER-ba17, complete sequence	10188-10218	9	0.71
LR134350_11	11.1|1939140|32|LR134350|CRISPRCasFinder	1939140-1939171	32	MT094430	Pseudomonas phage BIM BV-45, complete genome	37654-37685	9	0.719
LR134350_11	11.1|1939140|32|LR134350|CRISPRCasFinder	1939140-1939171	32	NC_031014	Pseudomonas phage Andromeda, complete genome	36816-36847	9	0.719
LR134350_14	14.1|2347739|33|LR134350|CRISPRCasFinder	2347739-2347771	33	NC_023284	Streptomyces sp. F2 plasmid pFRL4, complete sequence	336332-336364	9	0.727
LR134350_19	19.3|3138194|31|LR134350|CRISPRCasFinder	3138194-3138224	31	NC_019957	Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence	93935-93965	9	0.71
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NC_015057	Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence	250883-250913	9	0.71
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1226333-1226363	9	0.71
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP020811	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence	37478-37508	9	0.71
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	730179-730209	9	0.71
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	670676-670706	9	0.71
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	946920-946950	9	0.71
LR134350_21	21.1|3148683|31|LR134350|CRISPRCasFinder	3148683-3148713	31	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	728989-729019	9	0.71
LR134350_2	2.5|1053038|35|LR134350|CRISPRCasFinder	1053038-1053072	35	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	378137-378171	10	0.714
LR134350_2	2.10|1052823|37|LR134350|PILER-CR	1052823-1052859	37	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1538580-1538616	10	0.73
LR134350_2	2.10|1052823|37|LR134350|PILER-CR	1052823-1052859	37	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	274676-274712	10	0.73
LR134350_3	3.5|1054634|34|LR134350|CRISPRCasFinder,CRT	1054634-1054667	34	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2304508-2304541	10	0.706
LR134350_14	14.1|2347739|33|LR134350|CRISPRCasFinder	2347739-2347771	33	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	78241-78273	10	0.697
LR134350_19	19.3|3138194|31|LR134350|CRISPRCasFinder	3138194-3138224	31	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	244916-244946	10	0.677

1. spacer 1.1|320900|24|LR134350|CRISPRCasFinder matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

taccgcgaccgacggcgcctcacc	CRISPR spacer
cgccgcgaccgacagcgcctcacc	Protospacer
..***********.**********

2. spacer 1.1|320900|24|LR134350|CRISPRCasFinder matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

taccgcgaccgacggcgcctcacc	CRISPR spacer
cgccgcgaccgacagcgcctcacc	Protospacer
..***********.**********

3. spacer 1.1|320900|24|LR134350|CRISPRCasFinder matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

taccgcgaccgacggcgcctcacc	CRISPR spacer
cgccgcgaccgacagcgcctcacc	Protospacer
..***********.**********

4. spacer 1.1|320900|24|LR134350|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 3, identity: 0.875

taccgcgaccgacggcgcctcacc	CRISPR spacer
gaccgcgatcgacggcgcttcacc	Protospacer
 *******.*********.*****

5. spacer 1.1|320900|24|LR134350|CRISPRCasFinder matches to CP054911 (Pantoea ananatis strain FDAARGOS_680 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.875

taccgcgaccgacggcgcctcacc	CRISPR spacer
taccgccaccgaccgcgcctcact	Protospacer
****** ****** *********.

6. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to KY000037 (Agrobacterium sp. strain LBA4404 plasmid pTi_LBA4404, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

7. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NZ_CP026926 (Agrobacterium tumefaciens strain 1D1609 plasmid pTi1D1609, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

8. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NZ_CP011249 (Agrobacterium tumefaciens strain Ach5 plasmid pTi, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

9. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NC_002377 (Agrobacterium tumefaciens plasmid Ti, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

10. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NZ_CP032920 (Agrobacterium tumefaciens strain 15955 plasmid pTi15955, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

11. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NZ_CP033030 (Agrobacterium tumefaciens strain A6 plasmid pTiA6, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

12. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NC_011982 (Agrobacterium vitis S4 plasmid pTiS4, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

13. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NZ_KY000027 (Agrobacterium rhizogenes strain CFBP2692 plasmid pTi_CFBP2692, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

14. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NZ_KY000031 (Agrobacterium genomosp. 1 strain Tun198 plasmid pTi_Tun198, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

15. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NZ_KY000028 (Agrobacterium genomosp. 1 strain CFBP2712 plasmid pTi_CFBP2712, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

16. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NZ_KY000030 (Agrobacterium genomosp. 1 strain CFBP5767 plasmid pTi_CFBP5767, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

17. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NZ_KY000075 (Agrobacterium vitis strain CFBP2681 plasmid pTi_CFBP2681, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

18. spacer 1.4|321041|27|LR134350|CRISPRCasFinder matches to NZ_KY000061 (Agrobacterium tumefaciens strain CFBP2413 plasmid pTi_CFBP2413, complete sequence) position: , mismatch: 5, identity: 0.815

gggcgcagtgggctcggctgcctcggc	CRISPR spacer
cggcgcagttggctcggctgccaagga	Protospacer
 ******** ************  ** 

19. spacer 3.29|1054423|33|LR134350|PILER-CR matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.848

cggcg-cagacggcgacacgatgcgggcggcgtc	CRISPR spacer
-ggcgccggtcggcggcacgatgtgggcggcgtc	Protospacer
 **** *.* *****.*******.**********

20. spacer 3.29|1054423|33|LR134350|PILER-CR matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 5, identity: 0.848

cggcg-cagacggcgacacgatgcgggcggcgtc	CRISPR spacer
-ggcgccggtcggcggcacgatgtgggcggcgtc	Protospacer
 **** *.* *****.*******.**********

21. spacer 3.2|1054420|34|LR134350|CRISPRCasFinder,CRT matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 6, identity: 0.824

ccggcg-cagacggcgacacgatgcgggcggcgtc	CRISPR spacer
-tggcgccggtcggcggcacgatgtgggcggcgtc	Protospacer
 .**** *.* *****.*******.**********

22. spacer 3.2|1054420|34|LR134350|CRISPRCasFinder,CRT matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.824

ccggcg-cagacggcgacacgatgcgggcggcgtc	CRISPR spacer
-tggcgccggtcggcggcacgatgtgggcggcgtc	Protospacer
 .**** *.* *****.*******.**********

23. spacer 8.1|1762341|31|LR134350|CRISPRCasFinder matches to NZ_CP035513 (Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence) position: , mismatch: 6, identity: 0.806

agcgccaccaccagagaagcagcctcagtcc	CRISPR spacer
ggcgccaccaccagcgaagcatcctccggcg	Protospacer
.************* ****** **** * * 

24. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
gacgaggcgggggcgccggtcatcgactggc	Protospacer
 **********************  .** * 

25. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.806

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
agcgaggcagggtcgccggtcatgcgcgaga	Protospacer
 .******.*** **************  **

26. spacer 2.8|1053252|33|LR134350|CRISPRCasFinder matches to NZ_CP027794 (Rhodococcus hoagii strain DSSKP-R-001 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.788

ggcggagat--cgacaagctccagtctgacggcgt	CRISPR spacer
--cagataccgcgacaagttccagcctgacggcgt	Protospacer
  *.** *.  *******.*****.**********

27. spacer 8.1|1762341|31|LR134350|CRISPRCasFinder matches to CP054934 (Nocardiopsis flavescens strain NA01583 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

agcgccaccaccagagaagcagcctcagtcc----	CRISPR spacer
agcgccgccaccagcgaagcagc----gccctggg	Protospacer
******.******* ********    *.**    

28. spacer 11.1|1939140|32|LR134350|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.781

gggggacgcggttggtcgcggtgcggtagccg	CRISPR spacer
gcgggtcgcggtgggtcgcggtgcgcaggtcg	Protospacer
* *** ****** ************  .*.**

29. spacer 11.1|1939140|32|LR134350|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.781

gggggacgcggttggtcgcggtgcggtagccg	CRISPR spacer
gcgggtcgcggtgggtcgcggtgcgcaggtcg	Protospacer
* *** ****** ************  .*.**

30. spacer 14.1|2347739|33|LR134350|CRISPRCasFinder matches to NZ_CP026745 (Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

tgctggccgtcgcccacttccacggcgtcacgg	CRISPR spacer
cggccgccgtcggccacttccacggcggcaccg	Protospacer
.* . ******* ************** *** *

31. spacer 15.1|2365761|33|LR134350|CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

ggtcagcgaggcgggggatgagggccttccagt	CRISPR spacer
gctggtccaggcgggggatgagggacttccggt	Protospacer
* * . * **************** *****.**

32. spacer 19.3|3138194|31|LR134350|CRISPRCasFinder matches to KM058087 (Cronobacter phage vB_CsaP_Ss1, complete genome) position: , mismatch: 7, identity: 0.774

----tcgaggaggaggcgcaggcctcccagaccaa	CRISPR spacer
catcttg----ggaggcgcaagcctcccaaaccaa	Protospacer
    *.*    *********.********.*****

33. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 7, identity: 0.774

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
tccgaggcgtggtcgccggtcatgcgcaggc	Protospacer
. ******* ** **************  * 

34. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.774

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
tccgaggcgtggtcgccggtcatgcgcaggc	Protospacer
. ******* ** **************  * 

35. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP041045 (Paracoccus sp. AK26 plasmid pAK1, complete sequence) position: , mismatch: 7, identity: 0.774

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
tgcggggcgggggcggcggtcatgcgcatgt	Protospacer
..**.********** *********** .* 

36. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

---cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
gtgtccga---gggggcgccggtcctgcgctcgg	Protospacer
   . ***   ************* ********.

37. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NC_023316 (Streptomyces sp. 14R-10 plasmid pZL1, complete sequence) position: , mismatch: 7, identity: 0.774

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
gtcgaggcgcgggcgtcggtcatgcgtacca	Protospacer
  ******* *****.**********. * *

38. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.774

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
tccgtctcaggggcgcccgtcatgcgctcga	Protospacer
. **   *.******** *************

39. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 7, identity: 0.774

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
cgcctcccggtggcgccgatcatgcgctcga	Protospacer
*.*    *** *******.************

40. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
cacgcggcgggcgcgccggtcatggcgacgg	Protospacer
**** ****** ************    **.

41. spacer 2.16|1053252|34|LR134350|PILER-CR matches to NZ_CP027794 (Rhodococcus hoagii strain DSSKP-R-001 plasmid plas1, complete sequence) position: , mismatch: 8, identity: 0.765

ggcggagat--cgacaagctccagtctgacggcgtg	CRISPR spacer
--cagataccgcgacaagttccagcctgacggcgtc	Protospacer
  *.** *.  *******.*****.********** 

42. spacer 3.5|1054634|34|LR134350|CRISPRCasFinder,CRT matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 8, identity: 0.765

cgagccacgcgacgcagatccggggcgt--gtagtc	CRISPR spacer
aacgccacgtcacgcagatccggggcgtccgcag--	Protospacer
 . ******. *****************  *.**  

43. spacer 3.5|1054634|34|LR134350|CRISPRCasFinder,CRT matches to CP000664 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03, complete sequence) position: , mismatch: 8, identity: 0.765

cgagccacgcgacgcagatccggggcgtgtagtc	CRISPR spacer
cccgccacgcgacgctgatccggcgcgagatggc	Protospacer
*  ************ ******* *** *  * *

44. spacer 3.5|1054634|34|LR134350|CRISPRCasFinder,CRT matches to NZ_CP031753 (Rhodobacter sphaeroides strain EBL0706 plasmid p.B, complete sequence) position: , mismatch: 8, identity: 0.765

cgagccacgcgacgcagatccggggcgtgtagtc	CRISPR spacer
cccgccacgcgacgctgatccggcgcgagatggc	Protospacer
*  ************ ******* *** *  * *

45. spacer 6.1|1451634|30|LR134350|PILER-CR matches to NZ_AP022335 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49c, complete sequence) position: , mismatch: 8, identity: 0.733

aaaggcgggcgcctgctcaacggagggagc	CRISPR spacer
aaaggcgggcgcctgcccaacgacccttgg	Protospacer
****************.*****.     * 

46. spacer 6.1|1451634|30|LR134350|PILER-CR matches to MH067976 (Arthrobacter sp. strain ANT_H58 plasmid pA58H3, complete sequence) position: , mismatch: 8, identity: 0.733

aaaggcgggcgcctgctcaacggagggagc	CRISPR spacer
ctccgtgggcgccggctcagcggagggagg	Protospacer
    *.******* *****.********* 

47. spacer 6.1|1451634|30|LR134350|PILER-CR matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

aaaggcgggcgcctgctcaacggagggagc	CRISPR spacer
gtcggcgggcgccggctcaacggacgaggg	Protospacer
.  ********** ********** *..* 

48. spacer 6.1|1451634|30|LR134350|PILER-CR matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.733

aaaggcgggcgcctgctcaacggagggagc	CRISPR spacer
ttcggccggcgcctgctcaacggcggcggg	Protospacer
   *** **************** ** .* 

49. spacer 6.1|1451634|30|LR134350|PILER-CR matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 8, identity: 0.733

aaaggcgggcgcctgctcaacggagggagc	CRISPR spacer
ttcggccggcgcctgctcaacggcggcggg	Protospacer
   *** **************** ** .* 

50. spacer 6.1|1451634|30|LR134350|PILER-CR matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 8, identity: 0.733

aaaggcgggcgcctgctcaacggagggagc	CRISPR spacer
ttcggccggcgcctgctcaacggcggcggg	Protospacer
   *** **************** ** .* 

51. spacer 11.1|1939140|32|LR134350|CRISPRCasFinder matches to KR997933 (Mycobacterium phage Madruga, complete genome) position: , mismatch: 8, identity: 0.75

gggggacgcggttggtcgcggtgcggtagccg	CRISPR spacer
tcgggacgcggttggtcgcgttacggtggtga	Protospacer
  ****************** *.****.*. .

52. spacer 11.1|1939140|32|LR134350|CRISPRCasFinder matches to JN991020 (Pseudomonas phage Bf7, complete genome) position: , mismatch: 8, identity: 0.75

gggggacgcggttggtcgcggtgcggtagccg	CRISPR spacer
gaagctcgcggttggtcgcggtgcgggagttc	Protospacer
*..*  ******************** **.. 

53. spacer 11.1|1939140|32|LR134350|CRISPRCasFinder matches to NC_023691 (Mycobacterium phage Patience, complete genome) position: , mismatch: 8, identity: 0.75

gggggacgcggttggtcgcggtgcggtagccg	CRISPR spacer
tcgggacgcggttggtcgcgttacggtggtga	Protospacer
  ****************** *.****.*. .

54. spacer 11.1|1939140|32|LR134350|CRISPRCasFinder matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 8, identity: 0.75

gggggacgcggttggtcgcggtgcggtagccg	CRISPR spacer
cgccgtaggggctggtcgcgttgcggtagccg	Protospacer
 *  *  * **.******** ***********

55. spacer 11.1|1939140|32|LR134350|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

gggggacgcggttggtcgcggtgcggtagccg	CRISPR spacer
gcaggtgttggatggtcggggtgcggtagccg	Protospacer
* .**   .** ****** *************

56. spacer 15.1|2365761|33|LR134350|CRISPRCasFinder matches to NZ_CP035502 (Sphingosinicella sp. BN140058 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

ggtcagcgaggcgggggatgagggccttccagt	CRISPR spacer
gttcagcgaggcggtggatgacggccgcgccct	Protospacer
* ************ ****** **** . *  *

57. spacer 19.3|3138194|31|LR134350|CRISPRCasFinder matches to NZ_CP044974 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence) position: , mismatch: 8, identity: 0.742

tcgaggaggaggcgcaggcctcccagaccaa	CRISPR spacer
gcctggagcaggcgcaggcctcgcagatgac	Protospacer
 *  **** ************* ****. * 

58. spacer 19.3|3138194|31|LR134350|CRISPRCasFinder matches to NZ_CP044977 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-2, complete sequence) position: , mismatch: 8, identity: 0.742

tcgaggaggaggcgcaggcctcccagaccaa	CRISPR spacer
gcctggagcaggcgcaggcctcgcagatgac	Protospacer
 *  **** ************* ****. * 

59. spacer 19.3|3138194|31|LR134350|CRISPRCasFinder matches to NZ_CP015095 (Pelagibaca abyssi strain JLT2014 plasmid pPABY4, complete sequence) position: , mismatch: 8, identity: 0.742

tcgaggaggaggcgcaggcctcccagaccaa	CRISPR spacer
tgccggtggaggcgcaggcctccgagatgat	Protospacer
*   ** **************** ***. * 

60. spacer 19.3|3138194|31|LR134350|CRISPRCasFinder matches to NZ_LR594693 (Variovorax sp. WDL1 plasmid 5) position: , mismatch: 8, identity: 0.742

tcgaggaggaggcgcaggcctcccagaccaa	CRISPR spacer
gcctggagcaggcgcaggcctcgcagatgac	Protospacer
 *  **** ************* ****. * 

61. spacer 19.3|3138194|31|LR134350|CRISPRCasFinder matches to NZ_CP040824 (Paraoceanicella profunda strain D4M1 plasmid pD4M1F, complete sequence) position: , mismatch: 8, identity: 0.742

tcgaggaggaggcgcaggcctcccagaccaa	CRISPR spacer
agtagacggaggcgccggcctccgagaccac	Protospacer
   **. ******** ******* ****** 

62. spacer 19.3|3138194|31|LR134350|CRISPRCasFinder matches to NZ_LR594677 (Variovorax sp. PBS-H4 plasmid 3) position: , mismatch: 8, identity: 0.742

tcgaggaggaggcgcaggcctcccagaccaa	CRISPR spacer
gcctggagcaggcgcaggcctcgcagatgac	Protospacer
 *  **** ************* ****. * 

63. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.742

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
tcggaggcgtggtcgccggtcatgcgcaggc	Protospacer
.  ****** ** **************  * 

64. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.742

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
tcggaggcgtggtcgccggtcatgcgcaggc	Protospacer
.  ****** ** **************  * 

65. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NC_007764 (Rhizobium etli CFN 42 plasmid p42c, complete sequence) position: , mismatch: 8, identity: 0.742

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
cggcgcccggtggcgccgatcatgcgctcga	Protospacer
*.  .  *** *******.************

66. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP020908 (Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence) position: , mismatch: 8, identity: 0.742

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
cggcgcccggtggcgccgatcatgcgctcga	Protospacer
*.  .  *** *******.************

67. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.742

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
tcggaggcgtggtcgccggtcatgcgcaggc	Protospacer
.  ****** ** **************  * 

68. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
gccggggcgggggcgccggccatgcacgagc	Protospacer
  **.**************.*****.*  * 

69. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.742

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
ccataggcggtggcgctggtcatgcgcagca	Protospacer
*   ****** *****.**********   *

70. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
gccggggcgggggcgccggccatgcacgagc	Protospacer
  **.**************.*****.*  * 

71. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
gccggggcgggggcgccggccatgcacgagc	Protospacer
  **.**************.*****.*  * 

72. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
gccggggcgggggcgccggccatgcacgagc	Protospacer
  **.**************.*****.*  * 

73. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 8, identity: 0.742

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
ccataggcggtggcgcaggtcatgcgcagca	Protospacer
*   ****** ***** **********   *

74. spacer 2.2|1052823|36|LR134350|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 9, identity: 0.75

cctccgcggcggcgacctgggccgccggttcatgat	CRISPR spacer
cctccgcggcggcgtcctgtgccgcctggcgccggt	Protospacer
************** **** ****** * .  .*.*

75. spacer 2.2|1052823|36|LR134350|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 9, identity: 0.75

cctccgcggcggcgacctgggccgccggttcatgat	CRISPR spacer
cctccgcggcggcgtcctgtgccgcctggcgccggt	Protospacer
************** **** ****** * .  .*.*

76. spacer 3.20|1055709|35|LR134350|CRT,CRISPRCasFinder matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

agcgagacactgaaggcctcgcggacatagagctc	CRISPR spacer
agcgagaaactgaatgcctcgcggacagtcattcg	Protospacer
******* ****** ************   * .. 

77. spacer 3.21|1055780|34|LR134350|CRT,CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 9, identity: 0.735

cagatcgcatgaacgccggcttgaccgtggacct	CRISPR spacer
gcgagcgcatgaacgccggattgaccgaaaagcc	Protospacer
  ** ************** ******* ..* *.

78. spacer 3.31|1054568|32|LR134350|PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgacggcgccctttatgcggagtgcgaggt	CRISPR spacer
ggtatcggcgccctttatgcggatcgacttgc	Protospacer
***. ****************** .*    *.

79. spacer 3.33|1055727|35|LR134350|PILER-CR matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

agcgagacactgaaggcctcgcggacatagagctc	CRISPR spacer
agcgagaaactgaatgcctcgcggacagtcattcg	Protospacer
******* ****** ************   * .. 

80. spacer 3.34|1055798|34|LR134350|PILER-CR matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 9, identity: 0.735

cagatcgcatgaacgccggcttgaccgtggacct	CRISPR spacer
gcgagcgcatgaacgccggattgaccgaaaagcc	Protospacer
  ** ************** ******* ..* *.

81. spacer 6.1|1451634|30|LR134350|PILER-CR matches to NZ_CP054622 (Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence) position: , mismatch: 9, identity: 0.7

aaaggcgggcgcctgctcaacggagggagc	CRISPR spacer
tcaggcgggcgcctgctcaagggccgccta	Protospacer
  ****************** **  *    

82. spacer 6.1|1451634|30|LR134350|PILER-CR matches to NZ_CP039651 (Azospirillum sp. TSA2s plasmid p1) position: , mismatch: 9, identity: 0.7

aaaggcgggcgcctgctcaacggagggagc	CRISPR spacer
tcaggcgggcgcctgctcaagggccgccta	Protospacer
  ****************** **  *    

83. spacer 6.1|1451634|30|LR134350|PILER-CR matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

aaaggcgggcgcctgctcaacggagggagc	CRISPR spacer
gctggcgcgcgcctgctctacggaggcgaa	Protospacer
.  **** ********** ******* .. 

84. spacer 8.1|1762341|31|LR134350|CRISPRCasFinder matches to NZ_AP019196 (Aeromonas caviae strain GSH8M-1 plasmid pGSH8M-1-1, complete sequence) position: , mismatch: 9, identity: 0.71

agcgccaccaccagagaagcagcctcagtcc	CRISPR spacer
tgcgtcaccaccagtgaagcagccctgcccg	Protospacer
 ***.********* *********... .* 

85. spacer 8.1|1762341|31|LR134350|CRISPRCasFinder matches to NZ_AP019196 (Aeromonas caviae strain GSH8M-1 plasmid pGSH8M-1-1, complete sequence) position: , mismatch: 9, identity: 0.71

agcgccaccaccagagaagcagcctcagtcc	CRISPR spacer
tgcgtcaccaccagtgaagcagccctgcccg	Protospacer
 ***.********* *********... .* 

86. spacer 8.1|1762341|31|LR134350|CRISPRCasFinder matches to NZ_AP019196 (Aeromonas caviae strain GSH8M-1 plasmid pGSH8M-1-1, complete sequence) position: , mismatch: 9, identity: 0.71

agcgccaccaccagagaagcagcctcagtcc	CRISPR spacer
tgcgtcaccaccagtgaagcagccctgcccg	Protospacer
 ***.********* *********... .* 

87. spacer 8.1|1762341|31|LR134350|CRISPRCasFinder matches to NZ_CP047963 (Aeromonas media strain MC64 plasmid pMC64A, complete sequence) position: , mismatch: 9, identity: 0.71

agcgccaccaccagagaagcagcctcagtcc	CRISPR spacer
tgcgtcaccaccagtgaagcagccctgcccg	Protospacer
 ***.********* *********... .* 

88. spacer 8.1|1762341|31|LR134350|CRISPRCasFinder matches to NZ_CP026407 (Aeromonas sp. ASNIH2 plasmid pAER-ba17, complete sequence) position: , mismatch: 9, identity: 0.71

agcgccaccaccagagaagcagcctcagtcc	CRISPR spacer
tgcgtcaccaccagtgaagcagccctgcccg	Protospacer
 ***.********* *********... .* 

89. spacer 11.1|1939140|32|LR134350|CRISPRCasFinder matches to MT094430 (Pseudomonas phage BIM BV-45, complete genome) position: , mismatch: 9, identity: 0.719

gggggacgcggttggtcgcggtgcggtagccg	CRISPR spacer
gaagctcgcggttggttgcggtgcgggagttc	Protospacer
*..*  **********.********* **.. 

90. spacer 11.1|1939140|32|LR134350|CRISPRCasFinder matches to NC_031014 (Pseudomonas phage Andromeda, complete genome) position: , mismatch: 9, identity: 0.719

gggggacgcggttggtcgcggtgcggtagccg	CRISPR spacer
gaagctcgcggttggttgcggtgcgggagttc	Protospacer
*..*  **********.********* **.. 

91. spacer 14.1|2347739|33|LR134350|CRISPRCasFinder matches to NC_023284 (Streptomyces sp. F2 plasmid pFRL4, complete sequence) position: , mismatch: 9, identity: 0.727

tgctggccgtcgcccacttccacggcgtcacgg	CRISPR spacer
gcctggccctcgcccacatccacggccgccccc	Protospacer
  ****** ******** ********  * *  

92. spacer 19.3|3138194|31|LR134350|CRISPRCasFinder matches to NC_019957 (Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence) position: , mismatch: 9, identity: 0.71

tcgaggaggaggcgcaggcctcccagaccaa	CRISPR spacer
cgctggaggaggcgcaggccgccccgagcct	Protospacer
.   **************** *** ** *  

93. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NC_015057 (Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence) position: , mismatch: 9, identity: 0.71

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
aggttggcggggtcgccggtcatgcgcgggc	Protospacer
 .   ******* **************  * 

94. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.71

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
gcggaggtgggggcgccggtcaggcggcgaa	Protospacer
   ****.************** *** . .*

95. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP020811 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
agggaggcgggggtgacggtcatgcgggtgt	Protospacer
 . **********.* **********  .* 

96. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 9, identity: 0.71

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
cggtgcctggtggcgccgatcatgcgctcga	Protospacer
*.  .  .** *******.************

97. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 9, identity: 0.71

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
cggtgcctggtggcgccgatcatgcgctcga	Protospacer
*.  .  .** *******.************

98. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 9, identity: 0.71

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
gcggaggtgggggcgccggtcaggcggcgaa	Protospacer
   ****.************** *** . .*

99. spacer 21.1|3148683|31|LR134350|CRISPRCasFinder matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 9, identity: 0.71

cacgaggcgggggcgccggtcatgcgctcga	CRISPR spacer
cggtgcctggtggcgccgatcatgcgctcga	Protospacer
*.  .  .** *******.************

100. spacer 2.5|1053038|35|LR134350|CRISPRCasFinder matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 10, identity: 0.714

------tcgtccacccgggcgccgcggcacagcgtgcggct	CRISPR spacer
gggaagtgg------cgggcgccgcggcgcagcgcgcggcg	Protospacer
      * *      *************.*****.***** 

101. spacer 2.10|1052823|37|LR134350|PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.73

cctccgcggcggcgacctgggccgccggttcatgatg	CRISPR spacer
cctccgcggcggcgtcctgtgccgcctggcgccggta	Protospacer
************** **** ****** * .  .*.*.

102. spacer 2.10|1052823|37|LR134350|PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.73

cctccgcggcggcgacctgggccgccggttcatgatg	CRISPR spacer
cctccgcggcggcgtcctgtgccgcctggcgccggta	Protospacer
************** **** ****** * .  .*.*.

103. spacer 3.5|1054634|34|LR134350|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

cgagccacgcgacgcagatccggggcgtgtagtc	CRISPR spacer
caagccaagcgacgcagatccgtggccgctgcct	Protospacer
*.***** ************** ***   *. ..

104. spacer 14.1|2347739|33|LR134350|CRISPRCasFinder matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 10, identity: 0.697

tgctggccgtcgcccacttccacggcgtcacgg	CRISPR spacer
aaaccatcgtcccccacttccacggcgtgacga	Protospacer
 . . ..**** **************** ***.

105. spacer 19.3|3138194|31|LR134350|CRISPRCasFinder matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.677

tcgaggaggaggcgcaggcctcccagaccaa	CRISPR spacer
cgcgggaggaggcggaggccgcccagatggc	Protospacer
.  .********** ***** ******. . 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	820969 : 830132	11	uncultured_virus(37.5%)	transposase	NA
DBSCAN-SWA_2	1530865 : 1551470	24	Actinomyces_phage(46.15%)	terminase,portal	NA
DBSCAN-SWA_3	1625677 : 1634155	8	Bacillus_phage(16.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>LR134350|820969:830132|DBSCAN-SWA
CTCAGCCCTCCTCCGCGCCGGTGTAGGCCTCGAGCTCCTCGTGCAGGACCCGGAAGCCGGCGTCGAAGGCCTCCTTGTCGAAGGGCAGCTCGAGCCCGCGGCACTCCGCGGCCAAGGCGGCCATCGGTCCTGCCTCGGGGAAGCCCTGCTGCGCCAGGGCCTCGACCCGCGCGACCACCGCCGCGCAGCCCTCGTCGGAGGCAGCGACCTCGCCCTCGACCTCGTCCTCGGGCTCGCCGGCGGCGTCGTCGGAGGCAGCGGCCTCGTCCTCGACCTCGTCCTCGGGCTCGCCGGCGGCCTGATCGTCATCGGCCTGATCGCCAGCCGAGCCCCGGTCACCCTGCTCGGAGGCCGTGGCCTCCGCGGACTCCTGGGCGGGCTCGTCGGCGACGTCGTCGGAGGCGGCCTCGTCGTCGACGGGCTCGGAAGAAGGCTCGAGGAGCACGGCGCCCTCGTCGCGCAGGGTGCGCACCCACCGGTCCAGGGGGCGCTGGGTGGAGTCGAGGTCCTTGACCAGGGCACGGGTGTGGACATCGAGCTCGGCCACCCCGCTGCGCACCGCCTCGCTCGTCTCCGACAGGTTCCCCGTGCCCTCCTCCAGCGCCCGGCACAGCAGCGTCATGGAGGCCAGGGCGTCCTCCTCGCCGTCGTGGACCGCCGAGGCGGCGAAGCGCCCCACCATGAGGGTGAGAAGCCGCATCTGAGAGGCCAGGAAGCGCAGGCGGATGACCTGGCGGCTCAGCTCGTCCATCTCCGCGGGCAGGGACGCGAGGATGTCGACGGCCCTGCTCAGCGCCGTCGAGACCCGCTCGCTCGTACGCGGCGCCGAGGAGTCGGCGTCCGGGCTGCCGACCGAGGAGACTCCGGCGATGACCTCACGGGCCCGACGGGACATGTCGTCCATCTCCGAGGCCCGCGCGTCCAGGGCCCCCAGGAGGCGGCTGTACTCGTCGAGCTGGCGCACCAGGGCGTCGGAGTCGCGTTCGACGGTGCGCACGACCTCGAGGATCCTGCTCAGCGGGCCCGTTGCCTCAGGGGTCTCGGGCACACGCACCCCCGCACCCAGCAGAAGCTGGAGCTCGGTGGGCAGCAGCGCCTGGGTCATGTCGTACAACGAGCCGAAGCCCAGCGGCGCGATGGCCGCTGCCAGCTCACCCGCACCGTAGACACCGACCTCGTAGCGGGAGGCGCCCTCGCCCGCGACCCGTCGCTCCTCGGCGCGCACCGTCTCGTAGACCGACTCCACAAGCGTGCGGACCTCGTCGTTCTGCGGCTTCATGCGCACCGACAGGAAGTCCTCACCGACGGGGACCACGACTGCGAAGACACGGTAGTCCAGGTCGTCGTTGGCCTTGTTGACGACGTAGGCGCACACCGGCAGGCCCTGGAACAGGTCGTCCCACATGAGCTTGAAGACGCCTGCCGGCATCGTCTCGTGGCGGATGAGGTTGTGCGGCGCCCCGATGAGCTCATCGCGCCCGAAGGCGGACAGCTGGACGAAGGTGGAGTTCGACCGCGTGATGACGCCCTTGGCGTCGGTGACCGAGAAGAAGATGTCCTCCGGGTCGAAGAAGCGCTCGTTGCCGACGACGTGCTCCATACTTTCCTCTCAGGGACGGTGAATGAGCAGGGCCCCGTCAACCGTCACGGCACGGACGGTACGACAAGCGCCCCGGTCCCGTGGGCGGGGCCGAGGCACAAGTCTTGACTAGGACGATGGTCCGGCGCAAGGTCACGCGCCGGTTACGATCGACTCACTCAGGCGCGGGGGGCGTTGACATCCTCCGGCAGGGCCTTGCGAGCCACGTCGACAAGAGCCGAGAAGGCGGCGGGCTCGTTGACGGCCAGCTCGGCCAGCATGCGACGGTCGACCTCGACCCCGGCCAGGCCGAGGCCCTGGATGAACCGGTTGTAGGTCATGCCCTCCGCACGGGCGGCGGCGTTGATGCGCTGGATCCACAGGCGACGGAAGTCGCCCTTGCGGGCGCGACGGTCGCGGAAGGCGTAGACGCCGGAGTGGGTGACCTGCTCCTTGGCCTTGCGGTAGAGGCGCGAGCGCTGCCCGCGGTAGCCCGAGGCGCGGTCGAGGACGGTACGACGCTTCTTCTGGGCGTTGATAGCCCGCTTCACACGTGCCATGTGATGACTCCTTGAGGTGGTGGGGCGCTCAGCGACCGAGCAGCTTCTTGGCCTGACGACGGTCCGCCCTGGAGACCGGCTGGTCCAGGGCGAGCTTGCGCTTGCGGCGGGAGGACTTGCCCTCGAGCAGGTGGCGCTTGTTGGCCTGCTCACGCATGAGCTTGCCGCTGCCGGTGACCCGGAAGCGCTTCTTGGCACCGGAGTGCGTCTTGTTCTTCGGCATTCTCGATTTCCTCTTCTCGGCCCTGGCCTGGACGGCCCGGGCTGCGGACCCCGCACGGTCTGCCGCGGGGTGGGTGATGGTCTGAGCGCCCGGAGGGCTCAGCCCTGGGTCTGATCCGGCGCGGCCTGGTCGTCCTGCGGATCGCGCTCCTCCGGCTGGGGCTTCCTCGTCCGGTGGGAGTGCTTCTCCGCCCGGCGGCTGGCCCGGGCCTCCTCACGACGGCGGCGCTGGTCGGACTTAACCTCCGCCTTCTTGCGGGTGGGGGCCAGGACCATGACCATGTTCCGGCCGTCCTGGCGCGGGTGGGACTCGATGGTGCCCAGCTCGGACATCTCCTCGGCCACGCGCTGGAGCAGCCTGATGCCCAGCTCTGGGCGGGACTGCTCACGACCGCGGAAGCGGACGATGCACTTGACCTTGTCCCCGCCCTTGAGGAAGCGCTCGACGTGGCCCATCTTCGTGGCGTAGTCGTGCTCATCGATCTTGGGGCGGAACTGGATCTCCTTGAGCTGGGTGTTCGCCTGGTTCCTCCTGGCGTCGCGCGCCTTCATGGCCGACTCGTACTTGAACTTGCCGTAGTCCATGAGCTTGCACACCGGAGGGCGCGCGTCAGGCGCGACCTCGACGAGGTCGAGATTGGCCTCCTCGGCCAGGCGCAGGGCGTCCTCGAGGCGGACGACGCCGACCTGCTCGCCGCTGGGGCCGACCAGGCGCACCTCTGGGACGCGGATCCGTTCGTTGATACGGGGCTCGCTGATGACTGTTCCTCACTCTTGGTGACGGTGGCCGCCACGACGAGGAGGGCCCCCGCCGCGGTACGCGCGCGAAGGCCCCACATGTGCTCGCCCGAGCGCGGTCGCGCACAGGGGCACGACCGCCGAGGATCACTCCTCGCATGACCCGGCCCCTGACTCGGGACCCAGGTGGGATCTCTCCGCTTTGCGAGCCGGAGACAGACTCCGGCCGGTCGGTTGAGAACCCTAGCAGGTCGCGCGCCCTCCCGACAGCCCAGCGCCTTCGACCGCGCAGTGACCCTGCCCACCCCTCCGCGAGATCGGGACTTATGGCACCTCGAGATCGGGACAAATGGCACCTCGAGATCGGGACTAATGACACCTCGAGATCGGGACATATGACACCTCGAGATCGGGGGAAGTGGTACATCGGGCTGGTCTTCTCGCCGAGCCCCCCGCCTGGGCGTCCAGCACTTCCCTTCGTCGACCGGTCATGTGACTGTCGACCGTCTACGTGACAGCGAAAGCCCGGTCGAAAGTTACATGACCGGTCGAGGGACACATGACCGGTCGAGGGTGGCCGGGGTGTGCGGGGACGGGGTGTGTGCCCTGTCAGCCGTGGTACTCGGCCCTGGGCCGGGTCGGGACCGGGCTGGTCGGCGTTGGCCAGACCGGGGCCGGATCGGGGTCGGGCCGGGGCCGGGCCGGGTCCGGGTTGGTTAGCGTCGGCCGGGCCGGGGCTGGTCCGGGGTCGGGGCGCGCTCCCCGCGGTTGGGTGTGCTGGTGGGGGCGGCGAGGTGGTACACACATCAACTACCCTCGCGGCCCAGGTGGATGCCTGTGATTGAGCCGAACAATGATCGTCTTGTAGCAGGCGGAGCGGGTGTCTGTGTGCGTCGAGGGGGTCGTTGCACATCTCAGGGCCCCCCGACCGTCCCCGCGATGGGGGCCGGTCGGGGGGATCGGCGCGATTCCACGGTTTCTCCCCGCCGACCCCCGGCCACTACACGCCTGTTCTGTGCATCACACCCGGGTGGGGGCGCCAGCCACGCCCCGGACGCCCCGGCTGACCGTCACGCCAGGGCGCCAACCCGTCAACCCGCGCCGGCCCGTCGATCCACGCCGGCCACGCCGTCGATCGGGCCCTTCCGCCCGCACCTGCCGGAACCAGTAGGTGGTTTCAGGTGGTGAGTGCAATGGTGGTGTCGTGTTCTGTTTTCTGCAGGAGCCTGTTGAAGGCTTCTGCGGGTGTGGCCCAGTCTAGGGTCTGGCGGGGGCGGGTGTTGAGGAGGTGCTGGGCCTGTTCGAAGGCGTGGAGGGGGTAGGTCGACAGGTCGGTGCCTTTGGGGAAGAACTCGCGGATCAGGCCGTTGGTGTTTGGAGTGCTGGGTGTTTTTCGGACTGTGTGTTTTTGGTGTGTCAGGCCGCTTGTCTGCGGCCTAGGTGCTCGCCTTCGACCTCGTTGGGGGTGCGGTAGCCGAGGGTCGAGTGGAGACGTGTCTGATTGTATGTCAGCTCAATCCATGAGGCAATGTCGCTCACTGCCTTCCTACGTGTAGGGTACACCATGCGGTGGACCCTCTCGTTCTTAAGAGTCGCGTTGAATGACTCCGCCCAGGCATTGTCCCAGCACACCCCGGTGCGCCCGACGGACAGCCGTATGCCATACTTCCTCAGGTGGTCGGAGAACTGCTGAGAGGTGTACTGGCTGCCTCTGTCGGAGTGGAATATGGTTACCCCTCTCTTGTGGGGGCACCTGCGTACCGCCATGTCGATAGCGTCACGGACGAGGTCGGTGCGCATGTGGTCGGCCATCGCGTAACCGACTACCTTCCTCGTGCAGCAGTCCAGCACCGTTGCGAGATACACGAACCCAGCCCACGTGCGGATACAGGTGATGTCACCTACCCATTTGATTCCGGGTTTCTCGGCCGTGAAGTCACGGCGCACGAGGTCGGGACGCTCGCCCAGGTCACGGGCCGGGACGGTGGTACGGACCTTCCGGCGCGGTTGCGCGGCTCTCAGGCCCTGGGCGCGCATGACCGCACGCACAGTGTCCTGGCAGGTTGACACGCCTTGACGTCGCAGGGCTGCCGCGATGCGCCGGTACCCGTAGGCGCCGTGGGAGGCCTCGAACTCGGCCCGCACAAGAACCGCCAGCTCCTCCCGTCTCCTGATACGACTCGACTCAGCCCGCTCGCGCCAGGAGTAGTACCCGGACCTGGACACCCCGGCCCAGCGGCACATGGAGGCAACAGGGTATCTGCCTTCCTCGCGGTTGATGAGCTTGTACTTGTCGCTCACCGCTGTTCCTGCGCGAAGAAGGCCGCCGCTTTTTTCAGGAACTCGTTCTCCTGGCGCAGCTCGCAGTTCTCCGCTCTGAGCCTGGCTATCTGCGCGGACTCTGCGACTGCTTCACTTTCCTCCTGGCTGGAGTGCTCCTTCCTGTACCTCGCGACCCAGTTCCCCACCGTCTGGGGCACCAGGTCGTAGGAGGCCGCGACCGACGCGATCGTCCGGTCCTTCTCGACGACCTCACGCACAACCTGCGCCTTGAACTCGTCCGAGTACTTCGCCCTTGACATGGCTCCATCCTATCGAATCAGAAGAGAGACGAAAATCTCCCCTGTCCGAGAAACGCCACTCACCCCAGTTCTCGTTGGTTCCTCGTTGCCAGGGGCTGTGGGGGTCGCAGAAGTACACCTCGAGGTTGGTGGCGGTCCTGAAGCGGGCGACCTGGGCCATCTCGCCGCCCTGGTCCCAGGTCAGGGACCGGGCCATGGAGCGGGGCAGGCCCTTGATCATGGTCTCCAGCACCGTGGCCACGGTGGTGGCGGTGTGGTCGGTCAGCAGCGGGGCGATCAGGACCAGGCGGGTGGTGCGTTCGACCAGGGTGATCATCGCGGTGCGGTTGCCCGCGCCCATGACCAGGTCGCCCTCCCAGTGGCCTGGCACGGCCCGGTCGGCGACCTGGGCCGGGCGGGTGCTGATACGCGCGTCGGCCAGCCAGGGCCTGGAGGCCAGGGGCCCGGCCAGGGCCGAGCGTGGCACGCGCCGACTCCGCCCGGTACGCAGCCTGTAGTGACGGCCCAGCTCGGCGCGCAGCGTCCCTCGGCCCTGGACGTACAGGGACTGGTAGATCGTCTCGTGGCTCACACGAAGATCATCGCGCTCGGGGTGGTCCGCAGCCAGACGGCGGCTGATCTGCTGGGGCGACCACCGCTGTCTCAGGCCCTGGACCACCAGGGCCCGCAGCTGGTCGTTGGAGTCCAGCACACGCGCCTTGGGCCGTGCCCTGGCGGCCCGGGCCTGGGCGTGGCGGGCCTGGGGGTCGTAGGCCGGGCGTGTTCAATGGTCTGTGTAAGCCCTCTTTGAAGGACTGATGACTGTGACTGATGAGAAGACTGGTCCTGCTGGTGGGCGGGGCGTGGTTGAGGATCTTGTTGCCTCGGGTGGCTTGGACGGGTTGTTCGAGCGGATCGACTCGGGTGAGGTGGGGTTGACGGGCGCCGACGGGCTGCTGCCGGCCCTGCTCAAGGAGGCCCTGGAGCGGGGTCTGCAGGCTGAGCTGACGGAGCATCTTGGCTACGACAAGGGCGAGCAGGCGCCGGTGGCTCGTGGCAACGCCCGCAACGGCACCACGGTCAAGACGATCAGCTCTGAGGTCGGCTCGTTCGAGATCGAGGTCCCCCGCGACAGGGCCGGCAGCTTCACGCCGCGGCTGGTCAGGAAGGGGCAGCGGCGGATGGACGGTCTGGACTCGATGATCATCAGCCTGTACGCCGGTGGTATGACGGTGCGCGAGATCCGCCACCACCTGGAGTCCACGCTCGGTGTGGAGCTGTCGGTGGGGACGATCAGCAGGATCACGGACGCCGTGGCCGGGGCCTGTCAAGTTTTTTGTGTAAGCGGGTTGTTCAGAGGTGGGGGTTGATTCGGTCGGGGTAGGCGGTGGCGAGCTGGGCGAGGGCTTGTTTCCAGTTGGTGGTGATCCGGCCCTCGACCACGCGTGGCTTGGCCTTGCGCTTGTCCGCGGGCAGGTTCCTGTCCTTGTCGCGTTCTCGTGCCCGCTTGTCCTCGATGTTGCAGATCGCCAGCCACAGCAGCTTGACAGCGGCCTCGTCGCTGGGGAAGTGGCCCCGGTTCTTGGAGATCTTGCGTAGCTGGTAGTTGAGCGACTCGATGCTGTTGGTCGTGTAGATGACCCGGCGCAGCATCGGCGGGAACGCCAGGAACGGGGTGAAACGCTCCCACGCCCTGTCCCAGGTCGCCACCGTCTCGGGGTACTTGTCCCCCAGGGGAGAGCTGCTGAAGGCCGCCAGGGCCTCCAGGGCGGCCTCCTCACTGGGGGCGGCGTAGACCTGCTTGAGAGCAGCGGCGACCTTCTTACGGTCCTGGTAGGCCACGAACCTCATGGAGGCACGGATCAGGTGCACCACGCAGGTCTGGACCATGGAGTCGGGCCAGGTCGCCTCGATCGCCTCGGGCAGGCCGGTCAGCCCGTCACAGCACACGATCAGCACGTCCTTGACGCCCCTGTTGGCCAGCTCGGCGCACACGTGCGCCCAGAACGAGGCGCCCTCCTCGGCCTGGACCCAGATACCCAGGACGTGCTTGATCCCGTCCATGTCCACACCCACGGCGATGTGGGCCGAGCGGGTGGTGACCCTGTGGTCGACGCGGACCTTGACGCGGATCGCGTCGAGGTAGACCACCGGGTAGAACTCCTCCAGCGGGCGGCGCTGCCAGTCCAGGACCGCCTCGGCCACGGCGTCCGTGATCCTGCTGATCGTCCCCACCGACAGCTCCACACCGAGCGTGGACTCCAGGTGGTGGCGGATCTCGCGCACCGTCATACCACCGGCGTACAGGCTGATGATCATCGAGTCCAGACCGTCCATCCGCCGCTGCCCCTTCCTGACCAGCCGCGGCGTGAAGCTGCCGGCCCTGTCGCGGGGGACCTCGATCTCGAACGAGCCGACCTCAGAGCTGATCGTCTTGACCGTGGTGCCGTTGCGGGCGTTGCCACGAGCCACCGGCGCCTGCTCGCCCTTGTCGTAGCCAAGATGCTCCGTCAGCTCAGCCTGCAGACCCCGCTCCAGGGCCTCCTTGAGCAGGGCCGGCAGCAGCCCGTCGGCGCCCGTCAACCCCACCTCACCCGAGTCGATCCGCTCGAACAACCCGTCCAAGCCACCCGAGGCAACAAGATCCTCAACCACGCCCCGCCCACCAGCAGGACCAGTCTTCTCATCAGTCACAGTCATCAGTCCTTCAAGAGGCTTACACAGACCATGAACACGCCCCGCCCTGGAGGCCCTGGCGGCCTTCAGCAGCTCTCCCCTGGGGGACAAGTACCCCGAGACGGTGGCGACCTGGGACAGGGCGTGGGAGCGTTTCACCCCGTTCCTGGCGTTCCCGCCGATGCTGCGCCGGGTCATCTACACGACCAACAGCATCGAGTCGCTCAACTACCAGCTACGCAAGATCTCCAAGAACCGGGGCCACTTCCCCAGCGACGAGGCCGCTGTCAAGCTGCTGTGGCTGGCGATCTGCAACATCGAGGACAAGCGGGCACGAGAACGCGACAAGGACAGGAACCTGCCCGCGGACAAGCGCAAGGCCAAGCCACGCGTGGTCGAGGGCCGGATCACCACCAACTGGAAACAAGCCCTCGCCCAGCTCGCCACCGCCTACCCCGACCGAATCAACCCCCACCTCTGAACAACCCGCTTACACAAAAAACTTGACAGGCCCTGGCGTTCCCGCCGATGCTGCGCCGGGTCATCTACACGACCAACAGCATCGAGTCGCTCAACTACCAGCTACGCAAGATCTCCAAGAACCGGGGCCACTTCCCCAGCGACGAGGCCGCTGTCAAGCTGCTGTGGCTGGCGATCTGCAACATCGAGGACAAGCGGGCACGAGAACGCGACAAGGACAGGAACCTGCCCGCGGACAAGCGCAAGGCCAAGCCACGCGTGGTCGAGGGCCGGATCACCACCAACTGGAAACAAGCCCTCGCCCAGCTCGCCACCGCCTACCCCGACCGAATCAACCCCCACCTCTGA

Protein sequences of DBSCAN-SWA_1

>LR134350|820969:830132|820969_822568_-|VEG26766.1|DBSCAN-SWA
MEHVVGNERFFDPEDIFFSVTDAKGVITRSNSTFVQLSAFGRDELIGAPHNLIRHETMPAGVFKLMWDDLFQGLPVCAYVVNKANDDLDYRVFAVVVPVGEDFLSVRMKPQNDEVRTLVESVYETVRAEERRVAGEGASRYEVGVYGAGELAAAIAPLGFGSLYDMTQALLPTELQLLLGAGVRVPETPEATGPLSRILEVVRTVERDSDALVRQLDEYSRLLGALDARASEMDDMSRRAREVIAGVSSVGSPDADSSAPRTSERVSTALSRAVDILASLPAEMDELSRQVIRLRFLASQMRLLTLMVGRFAASAVHDGEEDALASMTLLCRALEEGTGNLSETSEAVRSGVAELDVHTRALVKDLDSTQRPLDRWVRTLRDEGAVLLEPSSEPVDDEAASDDVADEPAQESAEATASEQGDRGSAGDQADDDQAAGEPEDEVEDEAAASDDAAGEPEDEVEGEVAASDEGCAAVVARVEALAQQGFPEAGPMAALAAECRGLELPFDKEAFDAGFRVLHEELEAYTGAEEG
>LR134350|820969:830132|826364_826649_-|VEG26779.1|DBSCAN-SWA
MSRAKYSDEFKAQVVREVVEKDRTIASVAASYDLVPQTVGNWVARYRKEHSSQEESEAVAESAQIARLRAENCELRQENEFLKKAAAFFAQEQR
>LR134350|820969:830132|826599_827340_-|VEG26781.1|DBSCAN-SWA
MLDSNDQLRALVVQGLRQRWSPQQISRRLAADHPERDDLRVSHETIYQSLYVQGRGTLRAELGRHYRLRTGRSRRVPRSALAGPLASRPWLADARISTRPAQVADRAVPGHWEGDLVMGAGNRTAMITLVERTTRLVLIAPLLTDHTATTVATVLETMIKGLPRSMARSLTWDQGGEMAQVARFRTATNLEVYFCDPHSPWQRGTNENWGEWRFSDRGDFRLSSDSIGWSHVKGEVLGRVQGAGCA
>LR134350|820969:830132|829832_830132_+|VEG26789.1|DBSCAN-SWA
MLRRVIYTTNSIESLNYQLRKISKNRGHFPSDEAAVKLLWLAICNIEDKRARERDKDRNLPADKRKAKPRVVEGRITTNWKQALAQLATAYPDRINPHL
>LR134350|820969:830132|823428_824046_-|VEG26775.1|DBSCAN-SWA
MRLVGPSGEQVGVVRLEDALRLAEEANLDLVEVAPDARPPVCKLMDYGKFKYESAMKARDARRNQANTQLKEIQFRPKIDEHDYATKMGHVERFLKGGDKVKCIVRFRGREQSRPELGIRLLQRVAEEMSELGTIESHPRQDGRNMVMVLAPTRKKAEVKSDQRRRREEARASRRAEKHSHRTRKPQPEERDPQDDQAAPDQTQG
>LR134350|820969:830132|822726_823107_-|VEG26768.1|DBSCAN-SWA
MARVKRAINAQKKRRTVLDRASGYRGQRSRLYRKAKEQVTHSGVYAFRDRRARKGDFRRLWIQRINAAARAEGMTYNRFIQGLGLAGVEVDRRMLAELAVNEPAAFSALVDVARKALPEDVNAPRA
>LR134350|820969:830132|827452_827998_+|VEG26783.1|DBSCAN-SWA
MTDEKTGPAGGRGVVEDLVASGGLDGLFERIDSGEVGLTGADGLLPALLKEALERGLQAELTEHLGYDKGEQAPVARGNARNGTTVKTISSEVGSFEIEVPRDRAGSFTPRLVRKGQRRMDGLDSMIISLYAGGMTVREIRHHLESTLGVELSVGTISRITDAVAGACQVFCVSGLFRGGG
>LR134350|820969:830132|825483_826368_-|VEG26777.1|transposase|DBSCAN-SWA
MSDKYKLINREEGRYPVASMCRWAGVSRSGYYSWRERAESSRIRRREELAVLVRAEFEASHGAYGYRRIAAALRRQGVSTCQDTVRAVMRAQGLRAAQPRRKVRTTVPARDLGERPDLVRRDFTAEKPGIKWVGDITCIRTWAGFVYLATVLDCCTRKVVGYAMADHMRTDLVRDAIDMAVRRCPHKRGVTIFHSDRGSQYTSQQFSDHLRKYGIRLSVGRTGVCWDNAWAESFNATLKNERVHRMVYPTRRKAVSDIASWIELTYNQTRLHSTLGYRTPNEVEGEHLGRRQAA
>LR134350|820969:830132|823135_823330_-|VEG26773.1|DBSCAN-SWA
MPKNKTHSGAKKRFRVTGSGKLMREQANKRHLLEGKSSRRKRKLALDQPVSRADRRQAKKLLGR
>LR134350|820969:830132|827981_829322_-|VEG26785.1|DBSCAN-SWA
MTDEKTGPAGGRGVVEDLVASGGLDGLFERIDSGEVGLTGADGLLPALLKEALERGLQAELTEHLGYDKGEQAPVARGNARNGTTVKTISSEVGSFEIEVPRDRAGSFTPRLVRKGQRRMDGLDSMIISLYAGGMTVREIRHHLESTLGVELSVGTISRITDAVAEAVLDWQRRPLEEFYPVVYLDAIRVKVRVDHRVTTRSAHIAVGVDMDGIKHVLGIWVQAEEGASFWAHVCAELANRGVKDVLIVCCDGLTGLPEAIEATWPDSMVQTCVVHLIRASMRFVAYQDRKKVAAALKQVYAAPSEEAALEALAAFSSSPLGDKYPETVATWDRAWERFTPFLAFPPMLRRVIYTTNSIESLNYQLRKISKNRGHFPSDEAAVKLLWLAICNIEDKRARERDKDRNLPADKRKAKPRVVEGRITTNWKQALAQLATAYPDRINPHL
>LR134350|820969:830132|829428_829785_+|VEG26787.1|DBSCAN-SWA
MATWDRAWERFTPFLAFPPMLRRVIYTTNSIESLNYQLRKISKNRGHFPSDEAAVKLLWLAICNIEDKRARERDKDRNLPADKRKAKPRVVEGRITTNWKQALAQLATAYPDRINPHL

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG26766.1|820969_822568_-	Aerotaxis receptor	A0A1B0V854	Salmonella_phage	4.3e-11	33.6
VEG26768.1|822726_823107_-	50S ribosomal protein L20	NA	NA	NA	NA
VEG26773.1|823135_823330_-	RRP-L35	NA	NA	NA	NA
VEG26775.1|823428_824046_-	Translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.0e-13	33.6
VEG26777.1|825483_826368_-|transposase	insertion element IS2 transposase InsD	A0A0P0I4A4	Acinetobacter_phage	5.2e-43	38.1
VEG26779.1|826364_826649_-	Transposase	A9YX41	Burkholderia_phage	3.1e-05	35.1
VEG26781.1|826599_827340_-	Transposase and inactivated derivatives, IS30 family	W5R8L2	Staphylococcus_phage	4.3e-14	29.9
VEG26783.1|827452_827998_+	Transposase and inactivated derivatives	NA	NA	NA	NA
VEG26785.1|827981_829322_-	Transposase and inactivated derivatives	A0A218MNI5	uncultured_virus	2.4e-31	35.7
VEG26787.1|829428_829785_+	Transposase and inactivated derivatives	A0A218MNI5	uncultured_virus	4.4e-09	26.1
VEG26789.1|829832_830132_+	Transposase and inactivated derivatives	A0A218MNI5	uncultured_virus	3.2e-05	27.4

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>LR134350|1530865:1551470|DBSCAN-SWA
AATGAGCTTCTTCGTGGTCGACGACCAGGCCCACGTGCACCCCAAGCACCAGGCCCTGGTCCGACGCGGCCTGTCGGGAGACACCGACGCGCTCGCGGCTGGCTACTTGTGGGTGCTGATGGGGTCTCGACTGCGGTCGGCGTATCAGGACGGTCGGTTTGACCGGTTCGATCTGTTCGCTGTGATGCCTGATCCGCGCGTGCTGCGGATGGCTGAGATTTTGGTTGAGGCTGGTTTGTGGCATGATCGTGCTCACTGTTGTGAGCGGTGCGACCTTCCTCCGGAGGGGTCGTGGGTTTTCCACGATTGGGCGCACTGGTCGCAGCGGACGGGTGAGCAGGACCGGGCGCGCCGGGCATTGCAGACGGAGAGGAAGGACGCTTCCCTTCATGATGCGATGTGGGCACGCGATGGTCTGTCGCGGGCGCATGATGGGGAGCCTGAGAGGGCCCTGTGCGTCTATTGTCAGAGGCTCGTGTTCCGGGACACTCGGAAGGGTGACCTGGCGCCGGAGATGGACCACGTCTTCGGTCGGGCTATGGGTCTCGACGGCGTTGCCGTCGCGTGCCGCGCCTGCAATAGGGCGAAGGGCAATCGCTCTGCCTCGCGTGCGGGGATGAGCTTCCATCCGACGTCGCCGCACTCGGTGGCGCTGGCCCGTCGTGCTGAGCATCGATCGCGCCCTGGTGAGGGGCCCGCTGATCTGCTCGAGATGGCGTGGTCGTCGCCGTCGGGGGGTGGTGACGAGGCGGTTGGGGACCGTGGATCGCGCCCTGTCGAGGGGTTCGCAGATTCGGCTCCGCCGTCGGTTGGGGACCGTGGATCGCGCCCTGTCGAGGGGTTCGCAGATTCGGCTCCGCCGTCGGTTGGGGACCGTGGATCGCGCCCTGTCGAGGGGTTCGCAGATTCGGCTCCGCCGTCTGGGGGTGGGAGCAGTGTGCCTGCGTCCGTCGAGCCGCACCCACCTGTGGGGGGTGGGAGCAGTGTGCCTACCTGGGGGCCGGAACGTCCCGTTCTGGCCACCCAGGAGACACGTGACGGGGCTATCGGGGGCGACGTGCACCCGGGTACCAGGGGTGCCGAGAACGGCGCTCAGAATGGCTCCCACGGCCTCGTGGGGGCTGGGGCGCCTGGTGGTGGAGCTGCCGTGGCTGTCGTCGGCGAGCCTGCCGGCCCTGCCGGCGAGCCTGCCAGCCGTGGGCTCGTGTTCGACGACTTCGTCGCGGCCGAGCCTGCCGGCCCTGCCGGCGAGCCTGCCAGCCGTGGGCTCGTGTTCGACGACTTCGTCGCGGCCGAGCCTGCCGGCCCCTCGCGCGCGCGTACGCGTACGGGCGCGCGCACGGGCCCGTGCGCGCCCGACGCGCGTACGGGCCCGTGCGCGCCCGTGCGTGCGGGCCCGTGCGCGCCCGTGCGTGCGGGCCCGTGCGCGCTCTCCCGCCCGGCAAGGCAGGGCAGGGCAGGGCAAGGCAAGGCAGGGCAAGGCACGGGCCAGGGTGAGGGGTCGGATCACTGGGGTGAGGGCTCTGGTGAGGTCCGGTCAGGAAGCCCTCCGAGGGGGAGGAGGCGTCGAAGGGGGCGTCGAAGGAAGGGAACTTGTGACATCCACGGGGACACGTTTCCGTGCAGGCTTTGTGAGGAGGAGATCGAATGAGCTGCGAGACGAGGGCGGCTTTGGAGTCGGCGCTCATAGATCATCTGGCGGATGAGATGCCGGGGATGATGCCGGGTGCGTGGGTGTGCATTGCCGAGGCGGCCGGCATTGACACGTCGGACGATGAGATGTTCGGCGGCTGGCTGTTCGAGTCGGGCGGGACGCTGTTCGCTCAGCTCGGGATGATTGAGGCGTGGCGGGCTGAGAAGCTCGCTGGGCTGCGCGGTGACCGGGAGGACGGGGCGTGAGCGGCTGCGGGTCGGGGTGCGTGGTTCGTGGTGACCATGCGCCGGGGTGCTCGGGGTGGGTGCCTAGCGACGATAGCGCGGTGGTCGAGTGCTGGGGGTGTCTGCCTCGGCCGGCGGTGCAGGGCGTGCTGTGCGCCTGGTGCTGGGGGCGGATGCAGGCCACGGTGCGCACGCTGCCGTCTGTGGTGGAGCACCTGGTCGATGTGGCCGAGCCGTCGACGTCGTCGCCGTCGGGGCGCCGGTCGGTCGGGGCGCCGTCGTCGCGGCCGAGTGAGCGGGCGCTCTACGCCGAGGCGCTGGTGCAGGCGGACGACCTGCACGCGGCTCTGGTGTCGTGGGCGCTCGAGGTAGCCGAGGAGGCGTCGCTGCGTGTCGGGGTCCCGCGGGGGGGCACGCGGTGGACAGCCGATGGTGGGGACCCTGTCGGGCTGGCGGGCCGGGGGGCGACGCGGCGTGTGGTCGGGTGGCTGGTCCCGCACCTGGAGTGGGTGGCCACCCGGTCGTGGGCGCCGGTCATGCTCGAGGAGCTGGCGTCGATGTCGTCCTCGGCGTCGAGGAGGTTCCCGGTGGAGGAGCCGCAGCGTCGGGTCACTGACGTGCGGTGCCCGGGGTGTGGGTGCCTGTCCCTGGTGGTCGTGCAGCCGGCGGTCGTCGGGGCTGACCGGCTGGTGCGGTGCACGCTGTCGGCGTGTGGCCGTGTCCTGTCGGAGGATGACTGGGCCCGTGCGCGCCGGTGGGCGGTGGCGGTGGCGACGGCGGATGCCGGCGAGGGTGAGGCGGCGTGAGCGTCACCGGGCCGGACGGTGTCGAGTGGGTGCCGGTGGCCGAGGCGCTCGAGCGCGTGCCCGGGCTGGAGTACCGGACCCTCCAGTCGTGGTGGGCCCGGGGGGACGTGAGGACCCAGCGGGTGGGGCGCATGGTGTGGGTGGCATGGGAGGACGTCATGGCCCGGGAGGGCGTGGCGTTCCTCGCCGGCCGTCGTCAACAGGCGCGACACGCCGGTGATGCGCGCAGTGGTTGGACACACACCGAGGGCGTGTTGCATCCTCGGTGACAGCAGGACACCTGTGCCCGGAGGGCCACAGCCGCATGATCGGCCGGGGCTCTCGACCGTGGGCGGGGGTGGGGATCGATGGTGGCGGGGGTGTGGGTCGATGGCGTGGAGGCGCGGCGTGTCGCGGACGTCGACGGCCGAGCACCGCCGGTGGGCGGCCGCGGTTCTGCGGCGCGACCGGTTCGTCTGCCAGCTGGCCATGCCGGGCTGTCAGCACAGGGCGACCGAGGCCGACCACGTCGTGCCGGTTGCCGAGGGCGGAGCCATGTATGATCCTCTCAACGGGCAAGCCGCATGCGGCTCGTGTCACATGCAGAAGACTCAGCGTGAGGCAGCCCGAGGCAGGCAGCGCCGGTCCAGGCTCCGCCCGCCGACCCCGCACCCGGGCCTGGTCTGAGGGGCGCCGGCCGGAGAGCTGGAGGCCCCCGGGGTATCCCCCCAGGGGGGCCCGGGGGCCCGGCCACGGCTGGCATAGGGCTTCAAACCGTGTACGGGTTCCCGCGTTTCTGGTGGCACTAGTTTGGTGCCGCCGTTTTTCGTTGGTATTGCGCCGTTTTATGGCGGGTGTGGTGGGGGGAGGGTGTGATGCCCTCTGGTCCGGTCCCCAAGCATCCGAGCGTGCGGGCTCGTCGGAACGCCGCGCCGGGGATGGTGCAGCTGCCGGCCGATGGTAGGCACGGTCGGACCCCGACGTGGCCGCTGCCGCCGGACCCGGCGGAGGCGATGGTCGACCACTGGCAGTCGGTGGCTGACGACCTCGAGACTCAGGCGGATGCCGAGTCGGATGGTCGCCGCCGCAACCGGATGCTCGACCGGGCTGCCCGGGCCCGTGGGACGGCGGCCATGATCGCTGCCGAGTGCAAGGCGGCCGCGGAGCTCGAGCGCAAGATATGGGCTCGCGTCTGGACAACCCCCATGGCCACCCGGTGGGAGGCGATGCGGTGGACGCGTGAGGTCGCGGGCTACTGCCGGGCCAAGGCCCGGGCTGAGCTGGGCGACCACAAGGCTGCCAAGCTCGCCGTCGCGTACGCGGACCGCCTCGGACTGACCCCGTGGTCGATGCTGAGGCTGCGCTGGGAGATCGCGCCCGCCCCAGCCCCTGACGCCCCGGTCGCGACCGTGACCCCGATCTCCAGTGCTGCCCGAGACTTCACCTGACGAGGTGCTGCCTGGCTACTGGGTGGACTCATCCACGGGCGCGTGGATGACTCTCCCGTGGCCCGGTGACCCGAGCCTGCCGTGGAATCACCACGACCGGCTCGCGCTCCTGCCCCCGACGCTCGGCCCCCAGGTGATCGCCTGGGCTGAGGCGTACCTCAAGCACCATCTGACCGGCGAGCCGTGGCGCTTCACGGTCGGGCAAAAGAGGTTCCTGTACCTCTGGTATGCCATCAACCCGACGACCGGCCGGTTCATCTACCGGTCCGGGGTCAAGCGCGGCGCGAAGGGGACCGGGAAGGACCCGACCGCGTCCGCCCTGTCATGGGCCGAGGCGTGCGGGCCCGTGCAGCTCGACGGCTTCGACGCCAACGGCCAGCCCGTCGGCGTCGAGCGCGGCATGTCCAAGGTCCAGATCGCCGCGAACTCACTGTCCCAGGCCCGCGAGGTCCTCGACGTCGTCAACGGCATGATCACCGACGCGCTCGCGGATGACTATGCGGTCGACGACGGGCTGATGCGGACGGTGACGTCCGTGGGGCGGATCGAGCTGCTGACGGCGTCGGAGAAGTCGCAGGAGGGTGCGCCGGCGACGGCGGTCTTCCTCAACGAGTCGCACCACATGACAGCGTCGAGTGGTGGCCACAAGATTGCTGCGGTCGCCCGACGCAATGTAGGGAAGTCGCCGGCGTATATCCAGGCGCGTGTGCTCGAGCTGACCAACGCCCACTTGAGTGGGCAGGACTCGGTCGCGGAGCAGTCGTTCCTGGCGTGGCAGGCTCAGCAGAGGCCGAATGCGCCGCGGCGGGACATTCTCTACGACTCGATCGAGGCGCCGCCGTCGAGCGACATCTTCGACGAGGAGTCCCGCATGCGGGGGCTGCGGGCGGCGTACTCGGATGCGCCGTGGGCGGACCTGGAGCGCATCTCCGATGAGATGCTCGACACCCGTACCCCGGTGTCGGACTCGATTCGCTACTATTTCAACGGCCTGGGGGTCGCTGAGGACGCTTGGGTCAGCCCGGCGCGCTTCGATGCGATGGCGTCGCCGCGTGAGCTGGCCGAGGGCGACAAGGTGGCCCTGTTCCTCGACTGCTCCAAGAGCGAGGACGCCACGGGACTGGTGGGATGCCGCCTGGCCGACGGCTACGTCTTCGTGCTGGGTGTGTGGCAGCGGCCGCACGGTCACCGCGGCAAGGACTGGCTGGCGCCGCGCCAGGAGGTCGACGCCGTCGTCAGGAACGCGTTCGAGAGGTACCGGGTCGCGTGGTTCGGGGTCGACCCGTCCCCAGCGCGGGACGACTCGACCGAGGCCCTCTACTGGGGTGAGTGCATCGACTCCTGGCATCGGGACCTGCGGCACAAGGTGTCCGTGTGGGCGACCCCGGGTGCCGGCGGGTCCGCGGTGCTTTTCGACATGCGGATGAGCGCCCGGGGCGGCGTGCTCCGAAACCAAGCGTTTACCGACATGGCGATGCGCACCGCGATGGACATTGACGACCCCGAGGAGGGGTCGCCGTTCCCGCATGACGGGAACCCAGCGCTGCGGGTGCACACCCACAACGCACGCCGCCGCCCCAACAAGTGGGGGTACACGCTGGGGAAGGTCAACCGGGACTCCGACAAGCTGGTCGACCTGGCCGTGTGCATGGTCGGGGCCCGCCTGGGTGCGAAGATCGCCCTGGACTCCGGGAAGGTATCCGTGGGTGCGTCGAAGCGCCGTCGTCGTCGAGGGGGGGTGCTCCGGTGAGCTCAGTGACCTGGCTGGTCGACCCGTCGCGTGACCTCGAGGTCGCGCTGGCGCTCGGGGAGGACCTCGAGGAGTTCCGTGCGGTCCTGCGCCGGATCGGGGCGCACGGGCGCCGCAACCGGCTGCGCCGCCGCTACTACGACGGCGAGCAGGCGGCCCGCAACATCCAGATTGCGATCCCGGCCGAGTACGAGTACCTCATGCCGGTCCTGGGGTGGCCTGCCAAGACGTGCAACGTGCTGGCAGCCCGCACGAGGCTCGAGGGCTTCGCGGTGCCGGGTCAGGCGCAGATGGACGCTGAGGCGGCCGAGGCGCTCGACCTGAACCGGTTGCGGTCCTCGGTGCGTCAGGCCACGGTCGCCGCCCTCTGTGAGGGGTGTGCCTTCGTGTCGGTGACGGCCGGGGACACCGCCGACGGTGAGCCGCCGGCGGTCGTGAGCGTCTACAGCGCGCACGACGCGTCCGGGACGTGGGACCGCCGCAGGCACGACCTGTCCTGCGCGCTCACCATCGATGAGCGCAGCGAGCACGGGGCGATCCTCGCGATGACGTTCTGGACGCGGTCCGACCGCGTCGAGGTCTTCCGGGACGCGGTGTCCGCGTCATGGCAGGCCGAGCGGCTACCGCACGGCTTCGGCCGCGTGCCGGTGGTCCTCATCCCCTACCAGGCCGACGGAGGGCGACCGTTCGGCCGGTCGCGGATCACCCGGCCGGTGATGCGCCTGACCGACCACGCGGCCCGCACGCTGCTCCGCACCGAGATCAGCGCGGAGTTCTTCTCAGCCCCGCAGCGCTACCTGCTCGGGGCCGACATGGAGGCCTTCGAGGATCCGCAGACCGGGGAGCTGATGCCCGCGTGGGAGGCGGTCATCGGCCACCTGCTGGTGGCGCCCCGACCGCTAGACGAGAACGACCACGTCTCAGAGTCGAATCCGGTCGCCGGGCAGTTTCAGCAGGCGTCCATGGAGCCGCACAACGCAGAGCTCCGGCAGGTCGCGGCTATGTTCGCCGGCGAGACGTCCATTCCCCTCAACTTCCTGGGGATCGTGCAGGACAATCCGTCGTCGGCCGACGCCATCAAGGCCGCCGAGGCCGACTTGATCGCCGTCGTCGAGGACGCGCAGGCTGACTTCTCGGGGCCGTGGGCGCAGATCGCGCTCCTGGCGGTCCAGGCCGCCCGGGACACGACCGTGCCACCGGACGACATGTCCGGGCTGCGGCCTGTGTGGCGTGACCCGTCGACCCCGACGAAGGCAGCTCAGGCGCAGTCCGTGATGGGGCTCGTCGCCGCCGGCGTCCTGCCGGCCACCAGTGAGGTCACCTACGAGCAGTTGGGCTTCGACTCTGGGACGATCGCCCGCCTGATGGCCGACGCCGCATCCAGGCGGGCGCAGCAGACGCTGTCGTCCCTGGCGGGCGTAGCAGCGTCGGGCAGCGCGCTGGCCCAGGAGGTTGCGTCGGCGCGCACTGATGCCGACGGCACCCCGATCGCATAGAGGGGGGAGTCTCGGTGGCAGGAGCGTCCCCCCTCGCGATCTGGGACGGCCACCGGGTCAAGGTCGAGCAGATCGCCGTCCAGGGAGTGACCGCCCTCGAGCAGGTCTTCCTGGACAACCCGACGATGAGCCGCACAGAGCTCGCCTGGCTCATCCGGCAGGTCAACCATGAGTGGGGTGTGGTGGCCGCGCAGGACGCCGCCGACACAATGGTCATAGCCCGCGCCACCGCCGGCCAGCACGACCTCGAGGCCCCGACGGTCATCGACGCCATCACCACGGAGGTAGCCGAGGCGATCGCAGGGTGGGCCCAGGCCGGCGAGACCCCCGAGGAGGTCCTGCGCCGGGCCGCCATCTCGACCACACGCCACCTGCGCAACGCGTCCCGCGACACCGTCGAGGTGTCGACCGCGCTCGCCGGCACCGGATGGTGCCGGGTCCCGCGCCCCGGATGCTGTGCCTTCTGCCTCATGCTGGCGTCCCGCGGCGCGGTCTACACGTCGCGGGACGCAGCCCTCACGGTCGGCGGCGGCCGCCGGAAGCGGGGCCGGCGGGCATCCGGGTCCAGATACCACGACAACTGCGGGTGCATGGTCCAGGAGGTCCTGCCCGAGCACGGGGTGCCCCCCATCGTCGCCGGCATGGAGCGGCTCCTGTCCACGCTCCAGCAGCAGTCGCCGACCAAGACGCTCACCCTCGACGACTGGCGCGCCTATGTCACCGGCCAGCGCCGGGCGGACGCCGCAGCCCGGCGTAGCGCCGCGGCCGCGCTGGCCGAGGAGTGACACCCGCCGCCCCACTGGCGGCCTCAGATTCCGCACCACGAGCCGCGGTAAAGGGCTCGGACCGACTCGACCACGAGGACACACAATGCGCATCAGCACCATGCCCAGGCACGCCCGCTTCGCCGTCGCCCCGGACCCGGACCCGGCCGCAGGGACGACCCCGTCCCCCGACCCCGGCAGCGGCGATGGCAGCAAGCCCGCCTGGACTCCCCCTGCCAGCCAGGAGGAGCTTGACCGGATCATCGGCGAGCGCCTGGCCCGAGAGCGGGCCAAGTTCTCCGACTACGACGCCCTCAAGACGAAGGCAGCCGCCTTCGACCAGGCGGCCGAGGCGTCCAAGACCGCCGAGGAGCGCGCCGCCGACCGCCTGGCCAAGGCCGAGGCCCGCGCCACCGAGGCCGAGGCTCGAGCCGCCCAGGCCGAGGCCGCCGCGATGCGCGCCGAGGTCGCCGCCACCAAGGGAGTCCCCGTCGGCTTCCTCACCGGGGCCACCCGCGAGGAGGCCGACAAGGCAGCCGACGAGCTCCTGGCCTGGAAGAACGGCCCCACCACCACCACCAATGGTGGGCTGGCCGGCCCCCTGGGCCCCGGAGCACGCCGCGCTCGCGGGAGCGGGTCGACTGGGGGCGTCAAGGGTGGGGGCCTGGAGGCGGGCCGGGAGGCTTTCAAGGCGGCCCACAGCCGCAAGGGTGACTGACGCGCACACTCTCCGACACGACAGAAGGGAAGGGCAGCATGCCCAAGCTCAGGATTGAGCACTCCTCCCCTGGGGACCAGCGGTGGCTGGGCTCCCTGCATGGGATCGACAGTGCTCGCACCGTCACGATCGACCCGGCCGACTTCACGGCCCGGGTCGTTGACAAGATCATCCCCTCGGGGACTGCCGTCGCCGTCAAGGGCGGCAAGACGGTCCCCTACGTCTCAGGTGGGTCCGGGGGTGAGGAGAAGCTGACTGGCTTCATCCTGACCGACCAGCCGGCCGACGCCGGCAAGATCGCGGTCCCGGTCGTCGACCGAGTCCGTGTGACGGTCGCGCTCCTGCCCGACTCGGGCTTCACGATCCCGGCGGCCGGCAACGACCTGACCGCCTGCACCTACATCCCGCGGGAGGGCTGATCGATGGCACTGTGGACTGATCTCATCGAGCCCGCCGAGCTGACGGGCTACGTGCGCGCCGCCTACGAGGACGTCGAGCGCGCCAGGGGCTTCCTGGCGGCCTTCCTGCCCAACCAGGAGGTGCACGACGTCGTCGTCCGCACCTACACCGGTGAGGCCGGCCTGGTCGACGAGGCCTCCTACCGGGCCTTCGACGCTGAGCCTGAGGTGATCGCCGGTGGGCAGGCCCGCAAGCTCGTCATCGAGCTGCCGGCCCTCGGGTCGGTCAAGCCAGTGTCCGAGTACTCGCAGCTGCGGGCGCGCAACGCGACCGACGAGGTGCTGCGGGACGTCATCCTGCGTGAGGCGCTCCGCTCCGTGCAGGGTGTGTCCGACCGCACCGAGCGGATGCGCGGCACGGTACTCGAGACCGGCAAGGCCACCATCGACCAGGCCAACTTCCAGGTCGAGGACGACTTCGGTCGTGACCCGTCCATGACGGTCACGACGTCGGCCGTCTGGTCCGGCTCCACGGCCAAGGTCCTGGACGACCTGACCGCGTGGGCGGACGCCTACGCCGACCTCAACGGAGAGCGCCCGGGCGCCCTCGTGGTCTCCTCCAAGATCGCCCGCGCGATGAGGCGGCACGCGGACTTCCAGACGGTCACGGTCGAGGGTGTCACCCGTCACGCCTCGCTCGAGACCGTCAACTCGGTCCTGTCGTCCGAGGGTCTCCCGGCCATCACGGTCTACGACCGGCGGACCTCGTCGGCCGGCAAGGCGGTCCGTGTCCTCTCAGAGGACAGGCTGCTGTTCCTGCCGGACCCGGTCGACCCGTTCTCGGGTGCTCCGACCCCGCTGGGTGCGACCTGGTGGGGTCAGACCCTGGCCGCCTCTGAGGCGGACATGGGGATTCCGGACGAGCAGCAGCCGGGCATCGTCGCGTCCCTCGACCGGGCGTCCCGCACCCCGCGGACGGTGTCAATCGACGTCGACGCGATCGCCCTCCCGGTGCTCGCCAACGCGAACCTCTCGATGGCCGCGAAGGTGCTGTGATGCGGCGTCTGGTCACGCATGTAGTCGTGCACCGTCCGGCCGGGAGCGTCATGCTCCCGGCCGGGGCGGTCCTGGGCGATGAGGACGCGGCCCTGGTCACCAACCCGTCGGCGTGGGTCGACGACGGTGCCGCTGATGACGACGGCGGTGCCGAGGACGAGGATGAGGGCGCTGGAGCGTCGGGTGAGGTGCCCAGCGAGGCGTGGACCGTGGCTCAGATTCGCGAGTGGGCGGAGGCTCATGGCGTGGACCTGGGGCGGGCCACGACGAAGGCGGACCTCCTGCTGATCATCGGCGATGAGCTGGCGGCCGAGGGGGACGCTGGTCGTGGCGCTCACGTCGCTTGAGGCGGTGCGGGGGGCGTGGCTGCTCGACCCTGAGGACCTGCCTGAGGACAGTGTCCTGCAGGGGCTGATCGGCCGTGCTGAGCGGCTCCTGCGGGGCCTGTCACCGTCCCTGGGGGACCGTGCGGCTCGTGACCCGGACCTCGCTGACCGGGTGCAGGACGTCGTCGTCGCGATGGTCCTGCGGGTGGTTTCCAATCCCGAGGGGGTCCGGTCGACGTCGGAGACCACTGGGCCGCTGACGACGTCGGTCACCTACGGCGGGTCCGACCCCGGGCAGCTCTTTGTGACGGACACGGAGAAGGACCTCCTGGGCATCCGCCGGGGGCGCCGCCGGCAGGCGGCTTTCTCCGTGAGCATGCGCCCGAGGGGGTGACGGGATGTCCCCGCCTGGGAGGTGGCCGCGTCATCGCAGCCACAGGGAGTGGCGGACGCCGGTCACGGTCACGGGGCCGGTGCACCGGGACGCGGACGGTCTGCTGGTGCCGGCCTCGGGGCCGGTGACGGTCGAGGACTGTCACGTCGTGCCGGGGTCGAGCGCGGCCCTGGGGATGACGGACGCGGTGACGTCGGAGGCGCCGTCGGACGCGGCGGTGCTGTACGCCCCGCCGGGGGCGCCTGTCAGGCACCGGGACATGGTCGAGGTGCCGGACACGCACCCGCTGGCTGGCGCGTGGATGGTCGAGGAGACGCCGGCGGCCTGGCCGATGGGCCTGGTCGCCGCCTTGTCGAGGAGGTGACCGGTGATGGTCCGTGTGCAGATTGATCGGGCTGGGGTGGAGGCGCTGATGGTGTCTCAGCCGATGCAGGCGGCGATGCTGGCCGCTGGTCAGGACGTGGCCGCTGAGGCGGCGCGCAGGTCACCGCGCCGCACCGGTCAGCTGGCGGCCTCGTTCTCCGTGGAGTCGGCGGTGGCGACGGTCGTCGCTCGTGGCCGGGCGTCCCGGAGGGCGTCTGGTCGGGTGACGACGGACGTGCCGCACGCGGCGGCGGCCGAGTTCGGGCACATGTCCGGGAAGGCCGTTGGCGCGGGGGGTGTCCGCAGTGCTGTGCCTGGGGCGCACGTCCTGGGTGAGCTGGCGGCGACGAAGGCGGCGCGTGCCGCTCGAGGGGGTCGTCGCCGGTGAGTAGGTGGCTTGACCCTGTCGAGGCGGTCCGTGAGGCCGTGACCGAGGCGACGGGGGCGCCCACGACGCGCGTCCTCGACCCCGGCTTCACGTCGGGGCCGATGCCTCTGGTGCATGTGTCCCTGGTGTCGTCGGCCCCGGGTGACATCGACCGGACGTCGACCGTGGCGGTCGACGTGTACGCGGTGACGCCGTCGGCACGGGGTGAGGCGGGCGCGCAGGCGCTGGCCGAGCTGCTGGTCGACGCTGTCGACGACAAGCCGCTCGCGTCGTCGGAGGGGTACGTCGACGCCGTGACGGTGACGCAGGTGGGCGGCGTGCGCCCCTATTTCGAGACGGTCGAGGTCGTGCCTGTCACCCTCGACATCACATATCGACCTCGACACTGAGCGAAAGGAAACGAATATGGCTGCGACGACTATTGAGGCGCAGAAGAAGAAGCACAACAAGGACGTCAATGTCCGTAAGGGGCTCAATGTCATTGTATTCATGGCGCCCCGGACGGTGGACCTCCCCACGGCGATCACGGAGGGTGCCGGTCAGCTGACCGAGCTGCCGGCCGGATGGTGGCCGGTGGGGATGATGACGAAGGACGGCTTCACGGTCTCGACGGACGTCTCGATCGAGGAGGTCGAGGCTCTGGGTTACCTGGAGGCGGTCCGCACCGACATCGTGAAGGCGCCCAGGACGATCAAGTTCACGGTCCTGGAGCCGTTCCGGAAGAACCTCCAGGAGCTCGTCTACGGGGTCGACCTGGGGGCCCTGAAGGCGGACAAGACGACCGCGGAGGTCGTTTTCGATGAGGCGCCCCTGCCGGCGATCGAGGAGCTCCGCCTCATCGCGGTCATGGCCGACGGGCCGGCCGATGACGAGTGGATCGTCGGCCGCGGTTTCCCCCGCGTGAAGCTCTCCACGATCCCCGAGGAGGCGTGGAAGCCTGACGAGGCCGTCAAGTTCGACCTCGAGCTGTCTGTTTTCACGGACAACGAGGTCGGCACGCCGTGCCGCCACTACCTCGGTGGCACGGCCGCGGGCCGGCACCTGGACGCCATCGGCTTCACGCGCGCCGAGTGATGACGTCGCCCTGGCAGCGGATGGTCTCCCCGCTGCCAGGGCGGCACCCACCCATGGGAGACCGCACAGAGACCACGCACACATCGCGATGAGAGGACCAGACATGCCCCGATTCACCAAGACAGTCAGGGACGCCACTGGCACGGAGGTGACCCTGGAGCGGGTCACCGACGCTCCCGCGGAGATCGCCACCCTGCGCGTCTCCGGGTGGGACGAGGAGAAGGCGACGTCCGAGACGGCCCCTGCTGCCAAGGCCGACGTCGACAAGACGCCGGCGCCCAAGCCGGCCACCAAGCCCGCCCCGAAGCCCGCCGCTGAGGCGTGACCAACCACCAACTGACGACTCAGGAGACCACTATGAGCGATGTCAAGCCCACCCTGACCCTGGCCGCCCTCGAGAAGATGGACGCGGCGTCCGCCCCGGCCCCGTTCACCTTCGGGATCGGCTCCCGGCGGATCAGCTTCCCGGACCCCATGGAAATGCGCGTGGAGGACCTCGAGGCCTTCGCCGCTGACCTGGAGTCCACGCAGTCCCTCTCCGGCATCTTCCGCCGGTGGCTGGACCCGGAGGACGCCGAGGCCCTGCTCGAGAGGCTCACCGCCCGCCAGGCCCGCGTGCTCCTCACGACGGTCCAGGAGCACTACGGGGCCTTCCTGGGCGACCAGGGGGAAGGCGCCGCCTCTACGACTGCCTGACACGGCACGAGAGGCAGGTCACCCAGGACCTCGCAGACCGGGGATGGGACGCCCCCACCCTGTTCCGACAGAGGCGGTGGACGTTCCTCCTGGACCTCATCGATGGGCTGCCGGCGTCCTCACGGACGGTCTCGGCGATCCTCAACGACCCGGACCAGTCCCGGGTCGAGGCGCTCGCTGAGGCGGTCATCGCCTCTGAGGACGCCGAGGACGACGAGGCGGAGGTGGGTGGGTCGCTGGTCGGGCAGACGCCCGTCGTGGTGGTCCTCCAGGACATCTTCGACCTCATCGTCTCCGCCCTCGGTGGCGACGAGCGCTACCCGCGGCCCGTCACGGCGGTAGCCGCCGAGGTCGAGCGGGTCCGTGAGGAGCGCACGCTCGCCGCAGCCCACGATGTCATCGCCGCGATGACGCCGTGGGCCATGTGACACACGACGGATAGGCCCCGGTCGTGGGGCACCAGCACACGGGAGGGTGGTGGTGCCCCATGGCCGGGGCTTTCAAGGCTGGAACCGTCTTCGTTGACGTAGTCCCTTCCATGAAGGGGTTCTTCAAGGCGGTCACGGACGACGTCAAGGGGTCAATGCCGGCCGCTGGTGCGGACGCCGGCCGCAGCTTCGCGGATGGCTTCACGCGCGCCGCCCGCTCGGCAGGCCAGGACGTCGCTGCAGCGGTCGCTGACCCGCTGGGCAAGTCGACCGCCCGCCTCGAGGCCGAGGCCCGCGCCGCCGGGAAGGCCCTCGCCGCCGCGCAGGACGAGGTCGTGGCCGCCGCGGGCCGCCTGGAGGCCGCCCGCAAGGAGGAGGAGACGGCCGCGAAGGCCGCCGCCTCCGCTGAGGAGACGCTCAACCGCGCCCGCCAGAGCTCCGCCACGTCAGCCGCCGACGTCGCCCGCGCGGAGGCTGCCCACAAGGCCGCCGTCGAGCGCTCCACCAAGGCAAACCAGGACGCCGACGACGCCGCCGCGCAGCACTCCCGCGCCCTCGGCACGCTCGAGGAGGCCAGCCGGGGCGCCGACACGGCCGTCACCGAGCTGGCCCGGGCCACCGGCCGGTCCAAGCTCGAGATCGCCCAGGCCGACCCCGCCCTCGACGACCTCGCCCGCAGCCTCGACAAGGCCGAGCGTGAGGCCAAGGAGGCCGACACCGCCCTGACCGGCACCGGCAGGGGCGCATCCGCCATGTCCGGCATGGTCCGATCCGCCGTCGGCCCGCTCCTCGCCATGGCGGCCGCCGTCGGCATCGGCGGATTCGCGTCAGAGGCGATCACCGCCTCAGACGCCACCGACAAGTTCGTCAGCACGTTGCAGTTCGCGGGCCTCGACGGCGCGACCATCGAGCGCCTCACGGAGTCCGCGAAGGCGTACGCGGACGCCACCGTCTACGACCTCGCCGACATCCAGAGCATCACGAGCCAGCTGGCCGCAAACGGCGTGGACGGCTTCGACCAGCTCGCCGAGGCCGCCGGCAACCTCAACGCGGTAGCCGGAGGCTCTGCCGAGACCTTCTCCTCTGTCGGGATGGTCCTCACCCAGACCGCCGGCCAGGGCAAGCTCACCACCGAGAACTGGAACCAGCTCAGCGACGCGATCCCCGGCGCCTCGGGCAAGATTCAGCAGGCCCTCCTCGAGGCCGGCGCCTACACCGGAAACTTCCGCGAGGCCCTCGAAAAGGGCGAGATCACCGCCGAGGAGTTCAACGCCGCCGTCCTTCGCCTCGGCTCCGACGAGACCGCCGTAGCCGCGGCACGCTCCACGAAGACGATCGAGGGCGCCGCCGGGAACCTGCAGGCCACCCTCGTATCCGGCTTCAAGGAGTTCATCGACTGGGTCAAGCCCGCCGTCACAACCGCGATGGGCGAGGTCGCGACCGGCTTCGAGAACGCGTTCACCTGGATCAAGCAGCACAAGCAGGAAATCCTCGCGCTCGCGGGTGGCGTGACCGTGGCGGTTGCGGCATATGCGGGTTTCTCGATCCTCACGAAGGTGAAGGCCTGGATTCATGCCACCGAGATATCAATGCATGCCCTGAATGCTGCGATGAAGGCGAATATCGTTGGTATTGTCATCACGGCTATTGCGGCCCTGGTGACGGGGTTGATCCTGCTTTACCAGCGCAATGAGGACTTCCGGTTGAAGGTCCAGGAGATGGGCCGTGCGGTGAAGGCGGTCTGGGAGGACACGATCCAGCCGGCGATCGCGACGGTGTGGGGGTGGATTTCCGGGACGCTCATGCCGGGCATCCAGGGGATCATTGACATTCTCTTCAAGGGGGACTTCACCGGGTCGATCTTCGGCTTGGAGGAGGACTCGACGTTCGTCGACATCCTCTTCAGGGTCCGTGATGCCGCGATTGCGGTATGGGACTGGGTCGTGAACGTGCTCGCGCCGGGTGTGTCGAGCGCGTGGTCCAATGTCATTTGGCCGGCCGTGCAGACGGTGGCTACGGCCATCTATGACGCCTGGGTGAACGTCATCTGGCCGGCCTTGTCGGCGCTGTGGTCGTGGGTGACGGTGACGCTGGCGCCGGCCCTGTCGGCCTTCTGGACGGGCACCGTACAGCCCGTGTGGGCCGCGATCTCGGCGGCGGTGTCGGAGGCCTGGAACAGCTACATCCTCCCGGCCTTGTCGGCGCTGTGGTCGTGGGTGACGGTGACGCTGGCGCCGGCCCTGTCGGCCTTCTGGACGGGCACGGTCCAGCCCGTGTGGACGGCGATCTCGGGATTCATCCAGTCCGCGTGGGTGAACGTCATCGGCCCGTCACTGTCGGCGCTGTGGTCGTTCATCACGGGCGTCCTGGTGCCGATATTCCTGTTCCTGTGGAGGAATGTCGTCCAGCCCGCGTTCCAGGGTATCGGGGCGATCATATCGTTCGCCTGGAACTTCGCCATCAAGCCGGTCCTCGAGGGCTGGAAGTGGATGTTCCAGAACGTCATCGGCCCGGTGATTACGTGGCTGTGGCGTAATGTCGTCCAGCCCGCGTTCCAGGGTATTTCGACGACGATATCCACGGTGATCAACTTCCTGTCGGACACGGTCTTCCCGAAGATCAAGTCGGCGATTGACAACGCGAAGAACGGCTTTGACAACTTCCGTGACGGAGTGAAGGCCGCCATGGATAAGGTCAAGGAATACGCGGCGAAGCCGGTCAACTTCGTCATCAATACCGTCTACAAGGACGGTATCAAGAAGGCGTTTGACACGATCGCGGAGAAGGTCGGCCTCTCTTTGAGGCTGCCTGACGTGAAGGCGATCGCCGGGTACGCGTCCGGCGGCCAGTGGCAGACGATGACGCCGGGATACACCCCGGGCAGGGACGTGTATCACTTCTATTCACCGGATGGTGGTGGTGCGCTGAAGCTATCGGGCGGTGAGGGGATCATCCGTCCGGACGCGCTGCGCGCCCTCGGGGGCAAGCCGTGGCTGGATCGCGTCAACGCGTGGCGGGGGCGGGGTCTGGCGAACGTCGGCGACCTCGGTCGCCGGCGCGGCCAGGTGGCTTTCGCCGACGGCGGTATCTGGGGGCGCGTGACAGACACCTTCGAGGCGGCAGCCGACTGGGTGTCGTCGACGGCGTCGGCGGTCGCGGACATCGTCTCCGACCCGCTCGGTGCGGTCGCCAATCTCGTGATTGCGCCGGCTAAGACGCTGCTGGCGCAGATGGGCTCGTCATTCTGGGCTCAGACCATGAAGGCTACCCCGCCGTTGTGGTTCGAGTCGCTGAAGAACATCTTCAAGACCAAGACAGAGGAGTCGGGCATGGGGTCGTCCTCGGGCCTGGTGGGCGCCGCCCGCAAGGCGATCGGCGTGCCCTACATCTGGGGGGGGTCGTCGATCCCGCCCGGGGTGGACTGCTCGGGCCTGGTCTACTGGTCGGCGAAACAGCTCGGGCTGGGGTGGCCGCGGCTCACCGCCGCGGGCTACCAGGCGGGCTCAACGCCGGTGTCGGTGGGGTCGGCGGTCCCAGGTGACCTGCTTTTCTGGGGGTCGCCGGCATGGCACGTGGCAATCGTGTCGGGGCCGGGGCGGATGGTCGAGGCGCCCAAGCCGGGAACAACGGTCCGTGAGACCGCGGTCTGGGGGACGCCGACGGCGGGCCGCTACGGCGGCAAGAAGTACGACGCCGGCGGCTGGCTACCGCCGGGTGTGACTGCCGCGGTCAACCAGACCGGCGCCCGTGAGGCTGTGCTCACCGCGCGTCAGTGGCGGGATGTCTCGTCGCTGGCGGCTCAGGGGGTCAACAGCTCGGCGGCAGTGCTTGACGGTGCCGAGCTGCGTCTGGTGATCGATGACGGCGAGGCGCTGGATGCGCATATCGAGGTCGTGGCCACCGGGGCGTCCCGGCGTGCCGAGCAGCTGCGCGGGAGGGGTCGCTGATGGGGCTCATCGCCTCTGTGCCTGCCGGGCAGGCGCGCCTGGTGCAGGTCGTCGTCGAGGCCGGCACGGTCCCGCCCGGGGAGAGGTTCTCTGTGGTGGGTGAGGTCGGCTCCTCGAGGTGGACGGTGCGCGCCGGGGCGCGCGTGTCGGACGGGGGCCAGGTGGTCCTGGGTGACTCCCTGGCCCCCGTCAACGTCCCGGTCACCTACAGGGTGACGTGGGGGCCGGGGGCGGCGTCCAGTGCGGTGTCTGCGCCGGTGGTGCGACGATGGTCGGGCCGGTCGCTGCTCACGGATGTCACGGGCGGGTCCGTGGTGGACCTGCTGTGGCAGGGGGCGGACGCCCGGGCGGTGGATCGCAGGGTGACGGTGCATGAGGTGCCGGGGCGGCCTACCCCGGTGGTGGTGATGGCGCCGGCGATGGGCGCGGGGACGGTGTCGCTGACGGCCCGGACCGAGGGGGAGCACACGAGGGCGATGGCGGCGGTGGCCGCCCGCCCGCAGGTCAACATCCTCTTCCACAACCCCGCCCGGTGCTTCCAATGCGCGCGGTCCCTGTGCGACGTACCGCTGGTGACGGTCCTGGTCCTCACGGACGTGTCGCACTCGAGGGCTGACCGCCTCGACGCGGCGGAGCGCGTGTGGACGCTCAAGGCCGCGGTCGTGGGGGTGCCGGAGCCTGATCGTGTGGTGCCGACGTCGACGTGGGACCAGCTCGATGCCGCCGAGCGCACGTGGGACCAGGTCGACGACATGGGCATGTCCTGGGACGAGTTCGATCGTGTGCTGTGGCAGGAGGTGGGGGGATGATCCCCGCGAACCTGCTGAGTGACAGCTTCGTCTACGGCGCCCGCGTGGACTCCTGGCTGGGGTCGCGCTGGCTGGGGCGGGTGCCGGTCGTGTCGGGGTCGGTGTCGTGGTCGGCGTCGCAGCAGGTTCAGGGGACGCTGTCGCTGACGGTCCCCCGCCTGGGGTCGGTCTCTGAGGACGAGCCGGCCCGCGACTTCACGCCGACGACCCCGGAGTCCCCGCTGGCATGCTTCGGGCAGGTCCTCCGGGTGACGATCGAGGTGGAGTCGCTGGTCACTGGCCTGCAGCACACCGAGCCGGCCGGGGCCTTCCTGGTGACGGGGTCGGACGTGTCCCGCGGGACGGTGACCGTGTCCGGGAAGAGCCTGCTCCAGCGGGTCGAAGAGGACCGGCTCACGTCCCCGACGGTGCCGCGCGCCGGCGGGACGCTGGCCTCGGAGATGCGCCGCCTGCTCGGAGGCCACATGGGGCTGGTCATCGACCCGAGGCTGACGGACCGGGCCTGCCCGACGTCGATGACATGGGGCGAGTCCCGCATCGACGCCCTCTTCGAGATCGCCGACGCCTGGCCCGCCCGACTGCGAGAGGGGCGGGACGGCGTCCTCTACGTCTTCCCCCCCGTCGACGAGGGCACCGCACCGTCCCGCACGATGACCGACGGCGAGGGCGGCACCGTCATCGCCGCCAAGCGCACCGAATCGAGAGAGAAAGTCTACAACCGGGTCGTCGCCCGCGGCCAGCAGCAGGGCGACTCCGGACAGCCAACTTTCCAGGCGGTCGTCGACCAGCGGACCGGCCCCATGGCCACCAGCGGACCCTACGGCGTCGTCACGAGGTTCTTCTCATCCCCCCTGATCACGTCCCCCCGGTCGGCGATGTCCGCAGCTGTGACGATGCTCGAGACATCAGTCCGGCGATCCTGGACTATCCCGGTCGAGCACACCCCCGACCCATCTATCACCCTCGACGAGGTCGTCGACCTCCGGGTCTCCCCCGACGCCGGCACCGCCCCGCTCCGGATGCGCGGCGTCGTCGCCTCCGTGGACATACCCCTCACCCACGAGGGCACCGCCCGCACCGACGTGGAGGTGACGTCACGATGACCGCCGGCACGAGAGTCCTCGACCTCCTCGACACTGCCCCCCGGGACGAGCCCCCACGCTCCGGAGCCGACCGAGCCCAGGTAATGATCGCCGAGGTCACCGCCATATCCGTCGATGGCACCCAGGTCTCCGTCTCCATCCTCGGAGCCGACCCCGTCCAGCTCCCAGCCACCGCCTCCGTCTGGACAGGCGTCACCACAGCACACGTCCTGATGGACCCCGGCACAGGCCGCCCCGTCCACGTCCTCGGACCCGCCACCAAGCCACTCGAGAGCGCATCCACCGCACCCCCAACGCAGGGCGAGGACCCGGTGACCGTCGTCCGCACGGCCACAGTCACCCCCGAGTGGTCAGGCACCTGGACAGCCGGCCAGGGATGGGACCGACTCAACGTCGGCCGCTACGGCGGCCGCACCGACCTCTACCAGGGCGCCCTCGCCGGCATCCCCCGCACCGGCCTCGCCACCTACGGCCAGCGCATCACCGCCCTGGCCGCATCCAAGATCACACGCGCCGTCCTCACCCTCACCGGCAACGGCTCCAACCGCGGAAGCTGGACCGCCATCATCCAGTGCGCCGACAAGACCCCCGCCGGCCCCGCCCCCTCAGGCACAACCGCCGGCGTCACCATCACCGGCACCGCCACCGCACAGGTCGACATCACCGCGCTCGCGGGCGGGCTGATGGCCGGCCGGGGGCTGGCTCTTGTCGGCTCCAGCTATGGGGCCGTCCATGGGACGGGGGCGTCGATGTCCCTGGCCCTGACCTATGAGGCGCTCGCATGA

Protein sequences of DBSCAN-SWA_2

>LR134350|1530865:1551470|1541484_1541877_+|VEG28042.1|DBSCAN-SWA
MALTSLEAVRGAWLLDPEDLPEDSVLQGLIGRAERLLRGLSPSLGDRAARDPDLADRVQDVVVAMVLRVVSNPEGVRSTSETTGPLTTSVTYGGSDPGQLFVTDTEKDLLGIRRGRRRQAAFSVSMRPRG
>LR134350|1530865:1551470|1538235_1539006_+|VEG28037.1|DBSCAN-SWA
MAGASPLAIWDGHRVKVEQIAVQGVTALEQVFLDNPTMSRTELAWLIRQVNHEWGVVAAQDAADTMVIARATAGQHDLEAPTVIDAITTEVAEAIAGWAQAGETPEEVLRRAAISTTRHLRNASRDTVEVSTALAGTGWCRVPRPGCCAFCLMLASRGAVYTSRDAALTVGGGRRKRGRRASGSRYHDNCGCMVQEVLPEHGVPPIVAGMERLLSTLQQQSPTKTLTLDDWRAYVTGQRRADAAARRSAAAALAEE
>LR134350|1530865:1551470|1532759_1533548_+|VEG28032.1|DBSCAN-SWA
MSGCGSGCVVRGDHAPGCSGWVPSDDSAVVECWGCLPRPAVQGVLCAWCWGRMQATVRTLPSVVEHLVDVAEPSTSSPSGRRSVGAPSSRPSERALYAEALVQADDLHAALVSWALEVAEEASLRVGVPRGGTRWTADGGDPVGLAGRGATRRVVGWLVPHLEWVATRSWAPVMLEELASMSSSASRRFPVEEPQRRVTDVRCPGCGCLSLVVVQPAVVGADRLVRCTLSACGRVLSEDDWARARRWAVAVATADAGEGEAA
>LR134350|1530865:1551470|1542624_1543017_+|VEG28045.1|DBSCAN-SWA
MSRWLDPVEAVREAVTEATGAPTTRVLDPGFTSGPMPLVHVSLVSSAPGDIDRTSTVAVDVYAVTPSARGEAGAQALAELLVDAVDDKPLASSEGYVDAVTVTQVGGVRPYFETVEVVPVTLDITYRPRH
>LR134350|1530865:1551470|1542247_1542628_+|VEG28044.1|DBSCAN-SWA
MVRVQIDRAGVEALMVSQPMQAAMLAAGQDVAAEAARRSPRRTGQLAASFSVESAVATVVARGRASRRASGRVTTDVPHAAAAEFGHMSGKAVGAGGVRSAVPGAHVLGELAATKAARAARGGRRR
>LR134350|1530865:1551470|1530865_1532515_+|VEG28030.1|DBSCAN-SWA
MSFFVVDDQAHVHPKHQALVRRGLSGDTDALAAGYLWVLMGSRLRSAYQDGRFDRFDLFAVMPDPRVLRMAEILVEAGLWHDRAHCCERCDLPPEGSWVFHDWAHWSQRTGEQDRARRALQTERKDASLHDAMWARDGLSRAHDGEPERALCVYCQRLVFRDTRKGDLAPEMDHVFGRAMGLDGVAVACRACNRAKGNRSASRAGMSFHPTSPHSVALARRAEHRSRPGEGPADLLEMAWSSPSGGGDEAVGDRGSRPVEGFADSAPPSVGDRGSRPVEGFADSAPPSVGDRGSRPVEGFADSAPPSGGGSSVPASVEPHPPVGGGSSVPTWGPERPVLATQETRDGAIGGDVHPGTRGAENGAQNGSHGLVGAGAPGGGAAVAVVGEPAGPAGEPASRGLVFDDFVAAEPAGPAGEPASRGLVFDDFVAAEPAGPSRARTRTGARTGPCAPDARTGPCAPVRAGPCAPVRAGPCALSRPARQGRAGQGKAGQGTGQGEGSDHWGEGSGEVRSGSPPRGRRRRRGRRRKGTCDIHGDTFPCRLCEEEIE
>LR134350|1530865:1551470|1544885_1548773_+|VEG28050.1|DBSCAN-SWA
MAGAFKAGTVFVDVVPSMKGFFKAVTDDVKGSMPAAGADAGRSFADGFTRAARSAGQDVAAAVADPLGKSTARLEAEARAAGKALAAAQDEVVAAAGRLEAARKEEETAAKAAASAEETLNRARQSSATSAADVARAEAAHKAAVERSTKANQDADDAAAQHSRALGTLEEASRGADTAVTELARATGRSKLEIAQADPALDDLARSLDKAEREAKEADTALTGTGRGASAMSGMVRSAVGPLLAMAAAVGIGGFASEAITASDATDKFVSTLQFAGLDGATIERLTESAKAYADATVYDLADIQSITSQLAANGVDGFDQLAEAAGNLNAVAGGSAETFSSVGMVLTQTAGQGKLTTENWNQLSDAIPGASGKIQQALLEAGAYTGNFREALEKGEITAEEFNAAVLRLGSDETAVAAARSTKTIEGAAGNLQATLVSGFKEFIDWVKPAVTTAMGEVATGFENAFTWIKQHKQEILALAGGVTVAVAAYAGFSILTKVKAWIHATEISMHALNAAMKANIVGIVITAIAALVTGLILLYQRNEDFRLKVQEMGRAVKAVWEDTIQPAIATVWGWISGTLMPGIQGIIDILFKGDFTGSIFGLEEDSTFVDILFRVRDAAIAVWDWVVNVLAPGVSSAWSNVIWPAVQTVATAIYDAWVNVIWPALSALWSWVTVTLAPALSAFWTGTVQPVWAAISAAVSEAWNSYILPALSALWSWVTVTLAPALSAFWTGTVQPVWTAISGFIQSAWVNVIGPSLSALWSFITGVLVPIFLFLWRNVVQPAFQGIGAIISFAWNFAIKPVLEGWKWMFQNVIGPVITWLWRNVVQPAFQGISTTISTVINFLSDTVFPKIKSAIDNAKNGFDNFRDGVKAAMDKVKEYAAKPVNFVINTVYKDGIKKAFDTIAEKVGLSLRLPDVKAIAGYASGGQWQTMTPGYTPGRDVYHFYSPDGGGALKLSGGEGIIRPDALRALGGKPWLDRVNAWRGRGLANVGDLGRRRGQVAFADGGIWGRVTDTFEAAADWVSSTASAVADIVSDPLGAVANLVIAPAKTLLAQMGSSFWAQTMKATPPLWFESLKNIFKTKTEESGMGSSSGLVGAARKAIGVPYIWGGSSIPPGVDCSGLVYWSAKQLGLGWPRLTAAGYQAGSTPVSVGSAVPGDLLFWGSPAWHVAIVSGPGRMVEAPKPGTTVRETAVWGTPTAGRYGGKKYDAGGWLPPGVTAAVNQTGAREAVLTARQWRDVSSLAAQGVNSSAAVLDGAELRLVIDDGEALDAHIEVVATGASRRAEQLRGRGR
>LR134350|1530865:1551470|1532511_1532763_+|VEG28031.1|DBSCAN-SWA
MSCETRAALESALIDHLADEMPGMMPGAWVCIAEAAGIDTSDDEMFGGWLFESGGTLFAQLGMIEAWRAEKLAGLRGDREDGA
>LR134350|1530865:1551470|1543033_1543702_+|VEG28046.1|DBSCAN-SWA
MAATTIEAQKKKHNKDVNVRKGLNVIVFMAPRTVDLPTAITEGAGQLTELPAGWWPVGMMTKDGFTVSTDVSIEEVEALGYLEAVRTDIVKAPRTIKFTVLEPFRKNLQELVYGVDLGALKADKTTAEVVFDEAPLPAIEELRLIAVMADGPADDEWIVGRGFPRVKLSTIPEEAWKPDEAVKFDLELSVFTDNEVGTPCRHYLGGTAAGRHLDAIGFTRAE
>LR134350|1530865:1551470|1535021_1536725_+|VEG28035.1|terminase|DBSCAN-SWA
MTLPWPGDPSLPWNHHDRLALLPPTLGPQVIAWAEAYLKHHLTGEPWRFTVGQKRFLYLWYAINPTTGRFIYRSGVKRGAKGTGKDPTASALSWAEACGPVQLDGFDANGQPVGVERGMSKVQIAANSLSQAREVLDVVNGMITDALADDYAVDDGLMRTVTSVGRIELLTASEKSQEGAPATAVFLNESHHMTASSGGHKIAAVARRNVGKSPAYIQARVLELTNAHLSGQDSVAEQSFLAWQAQQRPNAPRRDILYDSIEAPPSSDIFDEESRMRGLRAAYSDAPWADLERISDEMLDTRTPVSDSIRYYFNGLGVAEDAWVSPARFDAMASPRELAEGDKVALFLDCSKSEDATGLVGCRLADGYVFVLGVWQRPHGHRGKDWLAPRQEVDAVVRNAFERYRVAWFGVDPSPARDDSTEALYWGECIDSWHRDLRHKVSVWATPGAGGSAVLFDMRMSARGGVLRNQAFTDMAMRTAMDIDDPEEGSPFPHDGNPALRVHTHNARRRPNKWGYTLGKVNRDSDKLVDLAVCMVGARLGAKIALDSGKVSVGASKRRRRRGGVLR
>LR134350|1530865:1551470|1536721_1538221_+|VEG28036.1|portal|DBSCAN-SWA
MSSVTWLVDPSRDLEVALALGEDLEEFRAVLRRIGAHGRRNRLRRRYYDGEQAARNIQIAIPAEYEYLMPVLGWPAKTCNVLAARTRLEGFAVPGQAQMDAEAAEALDLNRLRSSVRQATVAALCEGCAFVSVTAGDTADGEPPAVVSVYSAHDASGTWDRRRHDLSCALTIDERSEHGAILAMTFWTRSDRVEVFRDAVSASWQAERLPHGFGRVPVVLIPYQADGGRPFGRSRITRPVMRLTDHAARTLLRTEISAEFFSAPQRYLLGADMEAFEDPQTGELMPAWEAVIGHLLVAPRPLDENDHVSESNPVAGQFQQASMEPHNAELRQVAAMFAGETSIPLNFLGIVQDNPSSADAIKAAEADLIAVVEDAQADFSGPWAQIALLAVQAARDTTVPPDDMSGLRPVWRDPSTPTKAAQAQSVMGLVAAGVLPATSEVTYEQLGFDSGTIARLMADAASRRAQQTLSSLAGVAASGSALAQEVASARTDADGTPIA
>LR134350|1530865:1551470|1550681_1551470_+|VEG28053.1|DBSCAN-SWA
MTAGTRVLDLLDTAPRDEPPRSGADRAQVMIAEVTAISVDGTQVSVSILGADPVQLPATASVWTGVTTAHVLMDPGTGRPVHVLGPATKPLESASTAPPTQGEDPVTVVRTATVTPEWSGTWTAGQGWDRLNVGRYGGRTDLYQGALAGIPRTGLATYGQRITALAASKITRAVLTLTGNGSNRGSWTAIIQCADKTPAGPAPSGTTAGVTITGTATAQVDITALAGGLMAGRGLALVGSSYGAVHGTGASMSLALTYEALA
>LR134350|1530865:1551470|1544059_1544398_+|VEG28048.1|DBSCAN-SWA
MSDVKPTLTLAALEKMDAASAPAPFTFGIGSRRISFPDPMEMRVEDLEAFAADLESTQSLSGIFRRWLDPEDAEALLERLTARQARVLLTTVQEHYGAFLGDQGEGAASTTA
>LR134350|1530865:1551470|1533544_1533817_+|VEG28033.1|DBSCAN-SWA
MSVTGPDGVEWVPVAEALERVPGLEYRTLQSWWARGDVRTQRVGRMVWVAWEDVMAREGVAFLAGRRQQARHAGDARSGWTHTEGVLHPR
>LR134350|1530865:1551470|1549578_1550685_+|VEG28052.1|DBSCAN-SWA
MIPANLLSDSFVYGARVDSWLGSRWLGRVPVVSGSVSWSASQQVQGTLSLTVPRLGSVSEDEPARDFTPTTPESPLACFGQVLRVTIEVESLVTGLQHTEPAGAFLVTGSDVSRGTVTVSGKSLLQRVEEDRLTSPTVPRAGGTLASEMRRLLGGHMGLVIDPRLTDRACPTSMTWGESRIDALFEIADAWPARLREGRDGVLYVFPPVDEGTAPSRTMTDGEGGTVIAAKRTESREKVYNRVVARGQQQGDSGQPTFQAVVDQRTGPMATSGPYGVVTRFFSSPLITSPRSAMSAAVTMLETSVRRSWTIPVEHTPDPSITLDEVVDLRVSPDAGTAPLRMRGVVASVDIPLTHEGTARTDVEVTSR
>LR134350|1530865:1551470|1534402_1534975_+|VEG28034.1|DBSCAN-SWA
MPSGPVPKHPSVRARRNAAPGMVQLPADGRHGRTPTWPLPPDPAEAMVDHWQSVADDLETQADAESDGRRRNRMLDRAARARGTAAMIAAECKAAAELERKIWARVWTTPMATRWEAMRWTREVAGYCRAKARAELGDHKAAKLAVAYADRLGLTPWSMLRLRWEIAPAPAPDAPVATVTPISSAARDFT
>LR134350|1530865:1551470|1541881_1542241_+|VEG28043.1|DBSCAN-SWA
MSPPGRWPRHRSHREWRTPVTVTGPVHRDADGLLVPASGPVTVEDCHVVPGSSAALGMTDAVTSEAPSDAAVLYAPPGAPVRHRDMVEVPDTHPLAGAWMVEETPAAWPMGLVAALSRR
>LR134350|1530865:1551470|1543805_1544027_+|VEG28047.1|DBSCAN-SWA
MPRFTKTVRDATGTEVTLERVTDAPAEIATLRVSGWDEEKATSETAPAAKADVDKTPAPKPATKPAPKPAAEA
>LR134350|1530865:1551470|1539091_1539703_+|VEG28038.1|DBSCAN-SWA
MRISTMPRHARFAVAPDPDPAAGTTPSPDPGSGDGSKPAWTPPASQEELDRIIGERLARERAKFSDYDALKTKAAAFDQAAEASKTAEERAADRLAKAEARATEAEARAAQAEAAAMRAEVAATKGVPVGFLTGATREEADKAADELLAWKNGPTTTTNGGLAGPLGPGARRARGSGSTGGVKGGGLEAGREAFKAAHSRKGD
>LR134350|1530865:1551470|1539741_1540122_+|VEG28039.1|DBSCAN-SWA
MPKLRIEHSSPGDQRWLGSLHGIDSARTVTIDPADFTARVVDKIIPSGTAVAVKGGKTVPYVSGGSGGEEKLTGFILTDQPADAGKIAVPVVDRVRVTVALLPDSGFTIPAAGNDLTACTYIPREG
>LR134350|1530865:1551470|1540125_1541157_+|VEG28040.1|DBSCAN-SWA
MALWTDLIEPAELTGYVRAAYEDVERARGFLAAFLPNQEVHDVVVRTYTGEAGLVDEASYRAFDAEPEVIAGGQARKLVIELPALGSVKPVSEYSQLRARNATDEVLRDVILREALRSVQGVSDRTERMRGTVLETGKATIDQANFQVEDDFGRDPSMTVTTSAVWSGSTAKVLDDLTAWADAYADLNGERPGALVVSSKIARAMRRHADFQTVTVEGVTRHASLETVNSVLSSEGLPAITVYDRRTSSAGKAVRVLSEDRLLFLPDPVDPFSGAPTPLGATWWGQTLAASEADMGIPDEQQPGIVASLDRASRTPRTVSIDVDAIALPVLANANLSMAAKVL
>LR134350|1530865:1551470|1544622_1544826_+|VEG28049.1|DBSCAN-SWA
MGGSLVGQTPVVVVLQDIFDLIVSALGGDERYPRPVTAVAAEVERVREERTLAAAHDVIAAMTPWAM
>LR134350|1530865:1551470|1548772_1549582_+|VEG28051.1|DBSCAN-SWA
MGLIASVPAGQARLVQVVVEAGTVPPGERFSVVGEVGSSRWTVRAGARVSDGGQVVLGDSLAPVNVPVTYRVTWGPGAASSAVSAPVVRRWSGRSLLTDVTGGSVVDLLWQGADARAVDRRVTVHEVPGRPTPVVVMAPAMGAGTVSLTARTEGEHTRAMAAVAARPQVNILFHNPARCFQCARSLCDVPLVTVLVLTDVSHSRADRLDAAERVWTLKAAVVGVPEPDRVVPTSTWDQLDAAERTWDQVDDMGMSWDEFDRVLWQEVGG
>LR134350|1530865:1551470|1541156_1541504_+|VEG28041.1|DBSCAN-SWA
MRRLVTHVVVHRPAGSVMLPAGAVLGDEDAALVTNPSAWVDDGAADDDGGAEDEDEGAGASGEVPSEAWTVAQIREWAEAHGVDLGRATTKADLLLIIGDELAAEGDAGRGAHVA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG28030.1|1530865_1532515_+	Uncharacterised protein	A0A1J0MCR8	Streptomyces_phage	3.0e-07	33.6
VEG28031.1|1532511_1532763_+	Uncharacterised protein	NA	NA	NA	NA
VEG28032.1|1532759_1533548_+	Uncharacterised protein	NA	NA	NA	NA
VEG28033.1|1533544_1533817_+	Uncharacterised protein	NA	NA	NA	NA
VEG28034.1|1534402_1534975_+	Uncharacterised protein	A0A162E1R7	Tsukamurella_phage	2.1e-08	31.6
VEG28035.1|1535021_1536725_+|terminase	Phage terminase-like protein, large subunit	A0A159B6M5	Tsukamurella_phage	5.1e-188	58.2
VEG28036.1|1536721_1538221_+|portal	Phage portal protein, SPP1 Gp6-like	A0A068F3B8	Mycobacterium_phage	6.1e-68	38.1
VEG28037.1|1538235_1539006_+	Uncharacterised protein	T1R595	Propionibacterium_phage	6.4e-13	51.1
VEG28038.1|1539091_1539703_+	Uncharacterised protein	A0A059VB74	Mycobacterium_phage	3.2e-07	39.6
VEG28039.1|1539741_1540122_+	Uncharacterised protein	NA	NA	NA	NA
VEG28040.1|1540125_1541157_+	Uncharacterised protein	A0A166XYQ6	Gordonia_phage	1.8e-74	45.5
VEG28041.1|1541156_1541504_+	Uncharacterised protein	NA	NA	NA	NA
VEG28042.1|1541484_1541877_+	Phage protein Gp19/Gp15/Gp42	NA	NA	NA	NA
VEG28043.1|1541881_1542241_+	Uncharacterised protein	NA	NA	NA	NA
VEG28044.1|1542247_1542628_+	Uncharacterised protein	NA	NA	NA	NA
VEG28045.1|1542624_1543017_+	Uncharacterised protein	A0A2P1CIE6	Actinomyces_phage	1.2e-28	49.6
VEG28046.1|1543033_1543702_+	Uncharacterised protein	A0A2P1CIA5	Actinomyces_phage	3.9e-75	60.6
VEG28047.1|1543805_1544027_+	Uncharacterised protein	NA	NA	NA	NA
VEG28048.1|1544059_1544398_+	Uncharacterised protein	NA	NA	NA	NA
VEG28049.1|1544622_1544826_+	Uncharacterised protein	NA	NA	NA	NA
VEG28050.1|1544885_1548773_+	Probable endopeptidase cgR_2070 precursor	A0A2P1CIC9	Actinomyces_phage	1.1e-265	58.2
VEG28051.1|1548772_1549582_+	Uncharacterised protein	A0A2P1CIV9	Actinomyces_phage	4.8e-51	50.0
VEG28052.1|1549578_1550685_+	Uncharacterised protein	A0A2P1CI87	Actinomyces_phage	2.4e-101	53.7
VEG28053.1|1550681_1551470_+	Uncharacterised protein	A0A2P1CI79	Actinomyces_phage	2.7e-43	46.7

Sequences of DBSCAN-SWA_3

Nucleotide sequences of DBSCAN-SWA_3

>LR134350|1625677:1634155|DBSCAN-SWA
GTCAGGCCGCTTGTCTGCGGCCTAGGTGCTCGCCTTCGACCTCGTTGGGGGTGCGGTAGCCGAGGGTCGAGTGGAGACGTGTCTGATTGTATGTCAGCTCAATCCATGAGGCAATGTCGCTCACTGCCTTCCTACGTGTAGGGTACACCATGCGGTGGACCCTCTCGTTCTTAAGAGTCGCGTTGAATGACTCCGCCCAGGCATTGTCCCAGCACACCCCGGTGCGCCCGACGGACAGCCGTATGCCATACGGGCCTGTCAAGTTTTTTGTGTAAGCGGGTTGTTCAGAGGTGGGGGTTGATTCGGTCGGGGTAGGCGGTGGCGAGCTGGGCGAGGGCTTGTTTCCAGTTGGTGGTGATCCGGCCCTCGACCACGCGTGGCTTGGCCTTGCGCTTGTCCGCGGGCAGGTTCCTGTCCTTGTCGCGTTCTCGTGCCCGCTTGTCCTCGATGTTGCAGATCGCCAGCCACAGCAGCTTGACAGCGGCCTCGTCGCTGGGGAAGTGGCCCCGGTTCTTGGAGATCTTGCGTAGCTGGTAGTTGAGCGACTCGATGCTGTTGGTCGTGTAGATGACCCGGCGCAGCATCGGCGGGAACGCCAGGAACGGGGTGAAACGCTCCCACGCCCTGTCCCAGGTCGCCACCGTCTCGGGGTACTTGTCCCCCAGGGGAGAGCTGCTGAAGGCCGCCAGGGCCTCCAGGGCGGCCTCCTCACTGGGGGCGGCGTAGACCTGCTTGAGAGCAGCGGCGACCTTCTTACGGTCCTGGTAGGCCACGAACCTCATGGAGGCACGGATCAGGTGCACCACGCAGGTCTGGACCATGGAGTCGGGCCAGGTCGCCTCGATCGCCTCGGGCAGGCCGGTCAGCCCGTCACAGCACACGATCAGCACGTCCTTGACGCCCCTGTTGGCCAGCTCGGCGCACACGTGCGCCCAGAACGAGGCGCCCTCCTCGGCCTGGACCCAGATACCCAGGACGTGCTTGATCCCGTCCATGTCCACACCCACGGCGATGTGGGCCGAGCGGGTGGTGACCCTGTGGTCGACGCGGACCTTGACGCGGATCGCGTCGAGGTAGACCACCGGGTAGAACTCCTCCAGCGGGCGGCGCTGCCAGTCCAGGACCGCCTCGGCCACGGCGTCCGTGATCCTGCTGATCGTCCCCACCGACAGCTCCACACCGAGCGTGGACTCCAGGTGGTGGCGGATCTCGCGCACCGTCATACCACCGGCGTACAGGCTGATGATCATCGAGTCCAGACCGTCCATCCGCCGCTGCCCCTTCCTGACCAGCCGCGGCGTGAAGCTGCCGGCCCTGTCGCGGGGGACCTCGATCTCGAACGAGCCGACCTCAGAGCTGATCGTCTTGACCGTGGTGCCGTTGCGGGCGTTGCCACGAGCCACCGGCGCCTGCTCGCCCTTGTCGTAGCCAAGATGCTCCGTCAGCTCAGCCTGCAGACCCCGCTCCAGGGCCTCCTTGAGCAGGGCCGGCAGCAGCCCGTCGGCGCCCGTCAACCCCACCTCACCCGAGTCGATCCGCTCGAACAACCCGTCCAAGCCACCCGAGGCAACAAGATCCTCAACCACGCCCCGCCCACCAGCAGGACCAGTCTTCTCATCAGTCACAGTCATCAGTCCTTCAAAGAGGGCTTACACAGACCATTGAACACGCCCTGCCATACTTCCTCAGGTGGTCGGAGAACTGCTGAGAGGTGTACTGGCTGCCTCTGTCGGAGTGGAATATGGTTACCCCTCTCTTGTGGGGGCACCTGCGTACCGCCATGTCGATAGCGTCACAGACCAGGTCGGTGCGCATGTGGTCGGCCATCGCGTAACCGACTACCTTCCTCGTGCAGCAGTCCAGCACCGTAGCGAGATACACGAACCCAGCCCACGTGCGGATACAGGTGATGTCACCTACCCATTTGATTCCGGGTTTCTCGGCCGTGAAGTCACGGCGCACGAGATCGGGACGCTCGCCCAGGTCACGGGCCGGGACGGTGGTACGGACCTTCCGGCGCGGTTGCGCGGCTCTCAGGCCCTGGGCGCGCATGACCGCACGCACAGTGTCCTGGCAGGTTGACACGCCTTGACGTCGCAGGGCTGCCGCGATGCGCCGGTACCCGTAGGCGCCGTGGGAGGCCTCAAACTCGGCCCGCACAAGAACCGCCAGCTCCTCCCGTCTCCTGATACGACTCGACTCAGCCCGCTCGCGCCAGGAGTAGTACCCGGACCTGGACACCCCGGCCCAGCGGCACATGGAGGCAACAGGGTATCTGCCTTCCTCGCGGTTGATGAGCTTGTACTTGTCGCTCACCGCTGTTCCTGCGCGAAGAAGGCCGCCGCTTTTTTCAGGAACTCGTTCTCCTGGCGCAGCTCGCAGTTCTCCGCCCTGAGCCTGGCTATCTGCGCGGACTCTGCGACTGCTTCACTTTCCTCCTGGCTGGAGTGCTCCTTCCTGTACCTCGCGACCCAGTTCCCCACCGTCTGGGGCACCAGGTCGTAGGAGGCCGCGACCGACGCGATCGTCCGGTCCTTCTCGACGACCTCACGCACAACCTGCGCCTTGAACTCGTCCGAGTACTTCGCCCTTGACATGGCTCCATCCTATCGAATCAGAAGAGAGACGAAAATCTCCCCTGTCCGAGAAACGCCACTCACCCCACGGGGTACCGGGCACGGCAGGCGTCTGGGGGCTCAGGGGCGCGGCGCGATCGCTGCGGGCCTGGCCAGGGGTGATTCCCTGGCCTCGATCGCCCGGTTCCTGGGGGTGGCTGTCTCCACGGTCAGCCGCGAGGTCGCTGCCGGCGGGGGCCGGCAGGCCTACGACCCCCAGGCCCGCCACGCCCAGGCCCGGGCCGCCAGGGCACGGCCCAAGGCGCGTGTGCTGGACTCCAACGACCAGCTGCGGGCCCTGGTGGTCCAGGGCCTGAGACAGCGGTGGTCGCCCCAGCAGATCAGCCGCCGTCTGGCTGCGGACCACCCCGAGCGCGATGATCTTCGTGTGAGCCACGAGACGATCTACCAGTCCCTGTACGTCCAGGGCCGAGGGACGCTGCGCGCCCAGCTGGGCCGTCACTACAGGCTGCGCACCGGGCGGAGTCGGCGCGTGCCACGCTCGGCCCTGGCCGGGCCCCTGGCCTCCAGGCCCTGGCTGGCCGACGCGCGTATCAGCACCCGCCCGGCCCAGGTCGCCGACCGGGCCGTGCCAGGCCACTGGGAGGGCGACCTGGTCATGGGCGCGGGCAACCGCACCGCGATGATCACCCTGGTCGAACGCACCACCCGCCTGGTCCTGATCGCCCCGCTGCTGACCGACCACACCGCCACCACCGTGGCCACGGTGCTGGAGACCATGATCAAGGGCCTGCCCCGCTCCATGGCCCGGTCCCTGACCTGGGACCAGGGCGGCGAGATGGCCCAGGTCGCCCGCTTCAGGACCGCCACCAACCTCGAGGTGTACTTCTGCGACCCCCACAGCCCCTGGCAACGAGGAACCAACGAGAACACCAACGGCCTGATCCGCGAGTTCTTCCCCAAAGGCACCGACCTGTCGACCTACCCCCTCCACGCCTTCGAACAGGCCCAGCACCTCCTCAACACCCGCCCCCGCCAGACCCTAGACTGGGCCACACCCGCAGAAGCCTTCAACAGGCTCCTGCAGAAAACAGAACACGACACCACCATTGCACTCACCACCTGAAACCACCTGACACCTCGAGATCGGGGGAAGTGGCACCGCGAGATCGGGGGAAGTGGCACCGCGAGATCGGGACATATGACACCTCCAGAGCGACGAAGAGGATGGAGGCCTCGGCCCAGGTTGACTCGTCAAGAGGGAACGATGCGTGGGTTGTGGCATGGCGGTCAGAGTGACGCCGGACCCTGACCGGGATCTGATCGTGCAGCCGGCGGTGCAAGGCATCCGCGAATGCGCGGGCCCAACCCTCTACCCTGCCGCGCTCCAGAGCTCCTCGAGATCAGCACCCAGCGCCTCGGGCTCCTGCATGGGCAGCGAGTGGGTAGTGTCCAGCCAGATCTTGACCGTCACCCGGGGAAGGCGCTCCTGCGCTCGCTCGGCGGCCTGCTCACCACCTGCCATGGATTCGTGATCGGCGATCGCGACGTAGACCGGCATGGTCATCGTCGAGACCTCATCCTCCGACAGCGGCGACGGAGTGGGCAGGTCCGCCGAGTAGTGCTGGGTGCCGGTCCTGATCATGACCGCCGAGATCGACCGGCTGCGCAACGCCGCGAGCTAGCCGCACCCAGGGTTCGGCCGTCCAGGCGACCGCGCCTCACCGTTGAGCTCACGCTCTGGATGGCTGCTTGCAGGGAGGGCGAGGGTAAGGCCGTCCCCTTGGCGGGCGGGCTGGGGCTAAGTGTCTCGGCGCCTAGAAGCACGAGGGTGACGTCCACCACTGGCGGGCAGGGCGGACCCCCTGGCGTACGGAACGGCAGCCAGAGGCATGAGTCGCGGTCCAACGCATGTGTTTTGGCGCTTTGCCTGTACTAGGCACGTGCAAAGCGCCAGAACACATGCGGTCGACGCAAAGTCATGCACGTGGCGCACCACCATGAGAGCAACTCAGCAACCGGTCCCACGCCGAAACCAACTCGGCAACCGGTCCCACGCCGAGACCAACCCGGCACCGGACCGTTGAGCCCGCGGGGGGCGCCTGAGAGCCGCCCCTGCGCCTTCTGTCCCCGGCCATGGCGGCCGGCACAAGGGGAAATCACCGGCACGACTCGCCCCTCGGCGACGACCACCACGTGCCGCGCACCGTCCTTACAGACCGAGCAGGGCGAGCGGGACGACGGCGACGCCGTCGGCACGCCGGTAGGCGGTTCTACCAGTGGTGACGACGACGAGGTCGGCGATCCGCTCCGGGATCTGTTCGCGCAACCAGGGCAGATGTCGGACGTCGGAGTCATGGACATCCGCGGCGAGCTTGACCTCGATCCCGAGAACCTGCCCGTCCGACCCCTGGACGATGAGGTCCACCTCTCGCTCACCGCCGCGAAGGCGCAGATGGCTGACCGTCGCCTCCGCTGCCTGAGCGAGGACCCGAACTGTGAGCGTGACGAGGGACTCGAACAGAGGTCCCATCATGTGTACCCCAGACGGCCCCGGCAGGGAGCCGGAGGACAGGTTGAGCAGTCGAGCCGCGAGCGCGGGATCCGCCAGGTGGTGCTTGGGGGCCTGTTGAAGGCGCCTGATCGGGTTGTTGGCCGGGATCCACCCCGGGACCGGGTCGAGCAGCCACAACCTGGTGAGGTGGTCGCGGTAGGGGGTCGTCGTCGACGACGCTGCGGCATAGGCTGCCATCCACCGACGGAGCACCTCCCGGCGACGCACGTCATAGCCCTGGTCCGGCAGGTCGCGGTCGATGACGCGGCTGAGGTAGGAGTCGAGAAGACCTCGGCGCAGACGCGGAGGAGCCCCCATGATCCCGGGAAGCCGCTTGAGGTCATGGACTCGACGTAGTCCCCCCAACATGAAGGACGTCTCGCCTCCAATGTCCACCGATTGGCCCGCCCTGAGCAGGTCTCTCAGGGACGCGGTCGGGGAGACGAGTGCTCGCTCGTGGAGCCCCATGGGTCGCATGCGCAGGGAGAGGACTCGGCCAGCACCGCTGTGGGTACCCGTCGCGTCAACGGGCGTGGCTGATCCAGTATGGAGGAATCGTCCGGCGGGCGTCCGGAGAGATGATTCTTCGATGTGGTCTCCCGACCATCATGCGACTGTGACGTGCGACCCACTGGGGTCGGAGATGTGAGCCGCCCGAGCACTTTGAGCGCCGCCAGCCCCGCCCGGGCACCGGCTGGCTGGCCCGGAGCTGCGCACCGTCAACCGCACCCGGAATCTGCCAGGGTCGAGGCCGGGCTACGCCCGCAGGGGCCCTCACCAGGCTGCAACATGCAGAACACGCGACCACCATCACACTGACCGCACCACACGCCCCGCTTCTCCCGATCTCGAGGTGTCATTAGTCCCGATCTCGAGGTGTCATGAGTCCCGATCTCGCGGGGAGGGGGAGAGCTGACGAGGCGGGCGGAGGAGGTGAAGGGCCTCAAGGGCCTCAGAACAGCGCCGGCAGGGTCGCCTCGCTGCGTTCGCGCAGCTCGGCAAGGTCGAGCACGAGCGGAGCGCCGGAGTCGGAGAGCAGGTCGCTGCCGGAGACGACGAGGAGGTCCCCGCCGGTCGTGCCCAGCCGGGCCCAGGGCACGCCCTCGGCCTCGGCGGCAGCCGCTACCGCCGGCACGAGGCCCTCGGCGACGGCGACGACGGCCCGCGCCCCGGACTCGGAGAACAGGGCGGTGACGTCGTCGACGCCCCCGGGCAGGCCGGCGAGGTCGATGCTCGCCCCCACGCCGTAGCGCAGCACCGAGTCGACGAGGGTCTGGATGAGCCCACCGCCCGAGCAGTCGTGAGCGGCGCGCACGAGGCGCAGGTCCCCGGGCCCGTCGACCTCGCTCAACGCGACGAGCACCCTCCCCAGAGCCATCTCGGCCTCGAGGTCCACCGTCGGAGGCATCCCGCCGAGGTGGTCGTGGACCACCTTGGCCCACACCGAGCCGTCGAGCTCCTCACTGGTCTGACCCAGGACGACGATCGCCAGACCCTCCTCGTGCCAGCCCGAGGGGTTGGCACGGCGCACGTCGTCCATGACACCGAGGACGCCGACGACCGGGGTGGGGTTGATCGAGGAGTCGGGCAGGCCCTTGACCGGGCCGTGGGAGTTGTACAGGGAGACGTTCCCGCCGGTGACCGGCACGCCCATCGTGCGGCAGGCCTCCGCGAGACCGGTGATGGCCTCGACAAGCTGCCACATGGCGTCAGGGTCCTCCGGCGAGCCGAAGTTGAGGCAGTCGGTGACGGCACGCGGCCTGGCCCCCACGGTGCACACGTTGCGGTAGGACTCGGCCAGCGCCTGGGCCGCCCCCGTGGCCGGGTCGAGCTTGGTGAAGCGGCCGTTGGCGTCGGTGGCGATGGCCACTCCCCTGCCGGTGGCCTCGTCGACGCGCACGACGCCGGCGTCGTCGGGCTGGGCCAGTGCGGTGTCGCCGCGCACGAAGCGGTCGTACTGGTCGGTGACCCAGGCGACCGAGGCCTGACCCGGGCTCGTGACGACGGCCAGCACCTGCTCGGCGAGCTCGGTGGCGCTGGTCGGGCGGGGCAGGGACGCGGTGGTGTCGGCGTTGAGGGCGTCCTGCCAGGCGGGGCGGGCGTAGGGGCGGTCGTAGGTGGGGCCCTCGTGCGCCACGGTCCGCGGGTCGACGTCGACGATGCGCTCCCCGAAGTGGTCGATGGTCAGTCGGCCCGAGCCGTTGACCTCGCCGATGACGGAGGCCTCGACGTCCCACCTGTCGATGACGGCCATGAAGTCGTCGAGCTGATCGGGGGCGACGACGGCCATCATGCGCTCCTGGGACTCGCTCATGAGGATCTCCCCGGCAGTGAGCGTGGGGTCGCGCAGAAGCACCTTCTCGAGGTCGACGTGCATGCCGCCGTCACCGTTGGAGGCCAGCTCGCTCGTGGCGCAGGAGATGCCCGCGGCTCCCAGGTCCTGGATCCCGAGCACGAGCCCGCCCTCGAACAGGTCGAGACAGCACTCGATGAGGACCTTCTCCATGAACGGGTCACCGACCTGGACGCTGGGGCGCTTGGCCGGCACACCGTCCTCGAAGGACTCGCTGGCCAGGATCGAGGCACCGCCGATCCCGTCCCCGCCTGTGCGAGCCCCGAACAGGACGACCTTGTTGCCCTCGCCGCTGGCGTTGGCCAGGTGGATGTCCTCGTGGCGCAGCACGCCCACGCACAGGGCGTTGACGAGAGGATTGTCCTGGTAGGAGGCGTCGAACTCGGTCTCGCCACCGATGTTGGGCAGGCCCAGGCAGTTGCCGTAGCCCCCGACTCCCGCCACGACGCCGTGGACGACGCGCGCGGTGTCGGGGTGGTCGACGGCACCGAAGCGCAGCTGGTCCATGACCGCCACGGGACGGGCGCCCATGGAGATGATGTCCCGCACGATGCCCCCCACTCCGGTGGCCGCCCCCTGGTAGGGCTCGACGAAGCTGGGGTGGTTGTGGGACTCCACCTTGTAGGTGACGGCCCACCCGTCACCGATGTCGACGACGCCGGCGTTCTGGCCCATGCCGACCAGGAGGTGCTCGCGCATCTCGGGCGTCGTCTTGTCCGCGAACTGGCGCAGGTGGATCTTGGAGGACTTGTAGGAGCAGTGCTCGGACCACATGACCGAGTACATGGCGAGCTCGGCGTTCGTGGGCCGGCGCCCCAGGAGAGCGGTGATCGAGGTGTACTCCTCGTCCTTGAGGCCCAGCTCGGCGTAGGGCATCTCCCTGTCAGGGGTGGCCGCCGCGTCGGCGACGGTGTCGGGGTGCTCGACGGGTCGGCGCCCGTCCAGCCCGTCTGCCTGCGGGGTGACGGGGGCGGCGGGCTCGGGGGCGGCGGCCAT

Protein sequences of DBSCAN-SWA_3

>LR134350|1625677:1634155|1630464_1631124_-|VEG28205.1|DBSCAN-SWA
MGAPPRLRRGLLDSYLSRVIDRDLPDQGYDVRRREVLRRWMAAYAAASSTTTPYRDHLTRLWLLDPVPGWIPANNPIRRLQQAPKHHLADPALAARLLNLSSGSLPGPSGVHMMGPLFESLVTLTVRVLAQAAEATVSHLRLRGGEREVDLIVQGSDGQVLGIEVKLAADVHDSDVRHLPWLREQIPERIADLVVVTTGRTAYRRADGVAVVPLALLGL
>LR134350|1625677:1634155|1625960_1627301_-|VEG28195.1|DBSCAN-SWA
MTDEKTGPAGGRGVVEDLVASGGLDGLFERIDSGEVGLTGADGLLPALLKEALERGLQAELTEHLGYDKGEQAPVARGNARNGTTVKTISSEVGSFEIEVPRDRAGSFTPRLVRKGQRRMDGLDSMIISLYAGGMTVREIRHHLESTLGVELSVGTISRITDAVAEAVLDWQRRPLEEFYPVVYLDAIRVKVRVDHRVTTRSAHIAVGVDMDGIKHVLGIWVQAEEGASFWAHVCAELANRGVKDVLIVCCDGLTGLPEAIEATWPDSMVQTCVVHLIRASMRFVAYQDRKKVAAALKQVYAAPSEEAALEALAAFSSSPLGDKYPETVATWDRAWERFTPFLAFPPMLRRVIYTTNSIESLNYQLRKISKNRGHFPSDEAAVKLLWLAICNIEDKRARERDKDRNLPADKRKAKPRVVEGRITTNWKQALAQLATAYPDRINPHL
>LR134350|1625677:1634155|1628445_1629378_+|VEG28201.1|DBSCAN-SWA
MAVSTVSREVAAGGGRQAYDPQARHAQARAARARPKARVLDSNDQLRALVVQGLRQRWSPQQISRRLAADHPERDDLRVSHETIYQSLYVQGRGTLRAQLGRHYRLRTGRSRRVPRSALAGPLASRPWLADARISTRPAQVADRAVPGHWEGDLVMGAGNRTAMITLVERTTRLVLIAPLLTDHTATTVATVLETMIKGLPRSMARSLTWDQGGEMAQVARFRTATNLEVYFCDPHSPWQRGTNENTNGLIREFFPKGTDLSTYPLHAFEQAQHLLNTRPRQTLDWATPAEAFNRLLQKTEHDTTIALTT
>LR134350|1625677:1634155|1631758_1634155_-|VEG28207.1|DBSCAN-SWA
MAAAPEPAAPVTPQADGLDGRRPVEHPDTVADAAATPDREMPYAELGLKDEEYTSITALLGRRPTNAELAMYSVMWSEHCSYKSSKIHLRQFADKTTPEMREHLLVGMGQNAGVVDIGDGWAVTYKVESHNHPSFVEPYQGAATGVGGIVRDIISMGARPVAVMDQLRFGAVDHPDTARVVHGVVAGVGGYGNCLGLPNIGGETEFDASYQDNPLVNALCVGVLRHEDIHLANASGEGNKVVLFGARTGGDGIGGASILASESFEDGVPAKRPSVQVGDPFMEKVLIECCLDLFEGGLVLGIQDLGAAGISCATSELASNGDGGMHVDLEKVLLRDPTLTAGEILMSESQERMMAVVAPDQLDDFMAVIDRWDVEASVIGEVNGSGRLTIDHFGERIVDVDPRTVAHEGPTYDRPYARPAWQDALNADTTASLPRPTSATELAEQVLAVVTSPGQASVAWVTDQYDRFVRGDTALAQPDDAGVVRVDEATGRGVAIATDANGRFTKLDPATGAAQALAESYRNVCTVGARPRAVTDCLNFGSPEDPDAMWQLVEAITGLAEACRTMGVPVTGGNVSLYNSHGPVKGLPDSSINPTPVVGVLGVMDDVRRANPSGWHEEGLAIVVLGQTSEELDGSVWAKVVHDHLGGMPPTVDLEAEMALGRVLVALSEVDGPGDLRLVRAAHDCSGGGLIQTLVDSVLRYGVGASIDLAGLPGGVDDVTALFSESGARAVVAVAEGLVPAVAAAAEAEGVPWARLGTTGGDLLVVSGSDLLSDSGAPLVLDLAELRERSEATLPALF
>LR134350|1625677:1634155|1629624_1629897_-|VEG28203.1|DBSCAN-SWA
MIRTGTQHYSADLPTPSPLSEDEVSTMTMPVYVAIADHESMAGGEQAAERAQERLPRVTVKIWLDTTHSLPMQEPEALGADLEELWSAAG
>LR134350|1625677:1634155|1627988_1628273_-|VEG28199.1|DBSCAN-SWA
MSRAKYSDEFKAQVVREVVEKDRTIASVAASYDLVPQTVGNWVARYRKEHSSQEESEAVAESAQIARLRAENCELRQENEFLKKAAAFFAQEQR
>LR134350|1625677:1634155|1627314_1627992_-|VEG28197.1|DBSCAN-SWA
MSDKYKLINREEGRYPVASMCRWAGVSRSGYYSWRERAESSRIRRREELAVLVRAEFEASHGAYGYRRIAAALRRQGVSTCQDTVRAVMRAQGLRAAQPRRKVRTTVPARDLGERPDLVRRDFTAEKPGIKWVGDITCIRTWAGFVYLATVLDCCTRKVVGYAMADHMRTDLVCDAIDMAVRRCPHKRGVTIFHSDRGSQYTSQQFSDHLRKYGRACSMVCVSPL
>LR134350|1625677:1634155|1625677_1625938_-|VEG28193.1|DBSCAN-SWA
MTGPYGIRLSVGRTGVCWDNAWAESFNATLKNERVHRMVYPTRRKAVSDIASWIELTYNQTRLHSTLGYRTPNEVEGEHLGRRQAA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG28193.1|1625677_1625938_-	Uncharacterised protein	A0A1P8CWQ3	Bacillus_phage	9.3e-09	41.7
VEG28195.1|1625960_1627301_-	Transposase and inactivated derivatives	A0A218MNI5	uncultured_virus	2.4e-31	35.7
VEG28197.1|1627314_1627992_-	Integrase core domain	A0A0P0I4A4	Acinetobacter_phage	1.7e-25	35.9
VEG28199.1|1627988_1628273_-	Transposase	A9YX41	Burkholderia_phage	3.1e-05	35.1
VEG28201.1|1628445_1629378_+	Transposase and inactivated derivatives, IS30 family	W5R8L2	Staphylococcus_phage	2.2e-28	32.8
VEG28203.1|1629624_1629897_-	Uncharacterised protein	NA	NA	NA	NA
VEG28205.1|1630464_1631124_-	Uncharacterised protein	NA	NA	NA	NA
VEG28207.1|1631758_1634155_-	Phosphoribosylformylglycinamidine synthase 2	A6N228	Microbacterium_phage	4.1e-276	63.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage
LR134350.1|VEG28031.1|1532511_1532763_+|Uncharacterised-protein	1532511_1532763_+	83 aa aa	NA	NA	NA	1530865-1551470	yes

Protein sequences of LR134350.1|VEG28031.1|1532511_1532763_+|Uncharacterised-protein

>LR134350.1|VEG28031.1|1532511_1532763_+|Uncharacterised-protein
MSCETRAALESALIDHLADEMPGMMPGAWVCIAEAAGIDTSDDEMFGGWLFESGGTLFAQLGMIEAWRAEKLAGLRGDREDGA

Self-targetings in the prophage

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LR134350_18	Orphan	18.1|3060477|34|LR134350|CRISPRCasFinder	3060477-3060510	34	1538683-1538650	2

1. spacer 18.1|3060477|34|LR134350|CRISPRCasFinder matches to LR134350 position: 1538683-1538650, mismatch: 2

aggcgcagcatcctgggcgcgggacccggcacca	CRISPR spacer
aggcacagcatccggggcgcgggacccggcacca	Protospacer
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