CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134355	Mycolicibacterium chitae strain NCTC10485 genome assembly, chromosome: 1	1 crisprs	DEDDh,cas3,c2c9_V-U4,DinG,csa3,cas4,PD-DExK,WYL	0	2	0	0

1. LR134355

CRISPR-Cas detection and classification

Crispr_ID: LR134355_2

• CRISPR_ID: LR134355_2
• CRISPR_location: 1179842-1179924
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134355_2

Consensus_repeat	Method
GCCGGGCAGCGTCCGAAGGGCTGAG	CRISPRCasFinder

spacers of LR134355_2

>2.1|1179867|33|LR134355|CRISPRCasFinder
GTACGAAGCCCTGAAGGGGCGCTGGCCCATCGA

CRISPR arrays and Neighbor proteins around LR134355_2

CRISPR arrays

The CRISPR arrays of LR134355_2

>merge|LR134355|2|1179842-1179924|CRISPRCasFinder
GCCGGGCAGCGTCCGAAGGGCTGAGGTACGAAGCCCTGAAGGGGCGCTGGCCCATCGAGCCGGGCAGCGTCCGAAGGGCTGAG

>LR134355|2|1|1179842-1179924|CRISPRCasFinder
GCCGGGCAGCGTCCGAAGGGCTGAG	GTACGAAGCCCTGAAGGGGCGCTGGCCCATCGA
GCCGGGCAGCGTCCGAAGGGCTGAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134355.1|VEG46553.1|1173011_1173359_+|lactoylglutathione-lyase-family-protein	unknown	unknown	gnl|CDD|380093
LR134355.1|VEG46561.1|1177518_1178073_+|TIGR00730-family-protein	unknown	unknown	gnl|CDD|129813
LR134355.1|VEG46582.1|1186368_1187043_-|isoprenylcysteine-carboxyl-methyltransferase-(icmt)-family-protein	unknown	unknown	gnl|CDD|224931
LR134355.1|VEG46584.1|1187121_1188744_-|putative-exporter-of-polyketide-antibiotics	unknown	unknown	gnl|CDD|226089
LR134355.1|VEG46567.1|1180820_1181765_+|glycosyl-transferase	unknown	unknown	gnl|CDD|237556
LR134355.1|VEG46576.1|1183085_1184240_-|glycogen-synthase	unknown	unknown	gnl|CDD|273997
LR134355.1|VEG46555.1|1173365_1174352_-|transferase	unknown	unknown	gnl|CDD|274635
LR134355.1|VEG46572.1|1182201_1182786_+|DNA-3-methyladenine-glycosylase-I-TagA	unknown	unknown	gnl|CDD|377025
LR134355.1|VEG46569.1|1181842_1182205_+|DivIVA-domain-containing-protein	unknown	unknown	gnl|CDD|274639
LR134355.1|VEG46551.1|1171602_1173021_+|Fatty-acid-CoA-ligase-FadD36	unknown	unknown	gnl|CDD|236096
LR134355.1|VEG46574.1|1182902_1183070_+|Conserved-exported-protein-of-uncharacterised-function	unknown	unknown	gnl|CDD|371461
LR134355.1|VEG46545.1|1169393_1170368_+|proline-dehydrogenase	unknown	unknown	gnl|CDD|223580
LR134355.1|VEG46549.1|1171033_1171573_-|NTP-pyrophosphohydrolase	unknown	unknown	gnl|CDD|239516
LR134355.1|VEG46559.1|1175440_1177447_-|TPR-repeat-containing-protein	unknown	unknown	unknown
LR134355.1|VEG46557.1|1174385_1175456_+|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl|CDD|237264
LR134355.1|VEG46543.1|1167753_1169391_+|Delta-1-pyrroline-5-carboxylate-dehydrogenase	unknown	unknown	gnl|CDD|143441
LR134355.1|VEG46565.1|1179948_1180824_+|dihydropteroate-synthase	unknown	unknown	gnl|CDD|273657
LR134355.1|VEG46580.1|1185690_1186329_-|transmembrane-protein	unknown	unknown	gnl|CDD|379253
LR134355.1|VEG46578.1|1184388_1185603_+|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl|CDD|234846
LR134355.1|VEG46547.1|1170368_1170887_-|putative-secreted-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134355.1|VEG46553.1|1173011_1173359_+|lactoylglutathione-lyase-family-protein	gnl|CDD|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	9.36227e-31
LR134355.1|VEG46561.1|1177518_1178073_+|TIGR00730-family-protein	gnl|CDD|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	6.77556e-62
LR134355.1|VEG46582.1|1186368_1187043_-|isoprenylcysteine-carboxyl-methyltransferase-(icmt)-family-protein	gnl|CDD|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	3.25802e-19
LR134355.1|VEG46584.1|1187121_1188744_-|putative-exporter-of-polyketide-antibiotics	gnl|CDD|226089	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane].	2.09643e-84
LR134355.1|VEG46567.1|1180820_1181765_+|glycosyl-transferase	gnl|CDD|237556	PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional.	0
LR134355.1|VEG46576.1|1183085_1184240_-|glycogen-synthase	gnl|CDD|273997	TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
LR134355.1|VEG46555.1|1173365_1174352_-|transferase	gnl|CDD|274635	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. This model represents a clade of the enzyme specific to Actinobacteria. Alternate name: tetrahydrodipicolinate N-succinyltransferase.	0
LR134355.1|VEG46572.1|1182201_1182786_+|DNA-3-methyladenine-glycosylase-I-TagA	gnl|CDD|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	2.91304e-102
LR134355.1|VEG46569.1|1181842_1182205_+|DivIVA-domain-containing-protein	gnl|CDD|274639	TIGR03544, cell_division_initiation_protein_DivIVA, DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.	6.8077e-07
LR134355.1|VEG46551.1|1171602_1173021_+|Fatty-acid-CoA-ligase-FadD36	gnl|CDD|236096	PRK07787, PRK07787, acyl-CoA synthetase; Validated.	0
LR134355.1|VEG46574.1|1182902_1183070_+|Conserved-exported-protein-of-uncharacterised-function	gnl|CDD|371461	pfam11314, DUF3117, Protein of unknown function (DUF3117). This family of proteins with unknown function appears to be restricted to Actinobacteria.	2.87041e-23
LR134355.1|VEG46545.1|1169393_1170368_+|proline-dehydrogenase	gnl|CDD|223580	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism].	6.54468e-60
LR134355.1|VEG46549.1|1171033_1171573_-|NTP-pyrophosphohydrolase	gnl|CDD|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	3.02196e-34
LR134355.1|VEG46557.1|1174385_1175456_+|succinyl-diaminopimelate-desuccinylase	gnl|CDD|237264	PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase; Reviewed.	0
LR134355.1|VEG46565.1|1179948_1180824_+|dihydropteroate-synthase	gnl|CDD|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.07879e-102
LR134355.1|VEG46580.1|1185690_1186329_-|transmembrane-protein	gnl|CDD|379253	pfam13548, DUF4126, Domain of unknown function (DUF4126).	7.85599e-48
LR134355.1|VEG46578.1|1184388_1185603_+|glucose-1-phosphate-adenylyltransferase	gnl|CDD|234846	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
LR134355.1|VEG46543.1|1167753_1169391_+|Delta-1-pyrroline-5-carboxylate-dehydrogenase	gnl|CDD|143441	cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.	0

Protein sequences

>LR134355.1|VEG46561.1|1177518_1178073_+|TIGR00730-family-protein
MCVYCASGPRHPELLALATEVGRAIADRNWALVSGGGNVSAMGALADGARARGGRTIGVIPKALVHREVADVHADDLIVTDTMRQRKQVMEDHADAFLTLPGGIGTMEEMFETWTAGSLGMHDKPVVVLDPDGHYDGLLSWLEGLVASDYVAQRSLDRLLVVRELDVALDLCAPRSVPPVTSSD
>LR134355.1|VEG46559.1|1175440_1177447_-|TPR-repeat-containing-protein
MIRTVGKQWSVPRHADALERLEAALTDVPGAVLTGADGIGKSTLARQVAQRYAAAHPAATLRWVTATPTERAVPFGAFSHLVDLADIGKPAALLRAARRSLRADPEDLLIVDDANQLDALSATLTYQLALAGQTRMIVTARTDTAPPTIRALWDDAVLRRVDLETSDAAIDVGEFLADLPAPARDVLDHLAGQEPIPLADLEQLTSAEAVAEAERLGVAEIVDQGAEPMVFTAHPRFAEWALDALGDGGARRLRSRLLEPARRRARDHPSDRLRLAVLALDSDDPLPADRTVAAAGEALRLGDLPLAERLARSALQSTGSLDARLLLGHALAWQGRGRDADEVLSAVDPGVLSESELLAWALPRAANQFWMLGEPERATAFLNTTRTRLPAPADRVTLNALTATFAMNAGNPQRALQIAGEVLAAPEAGDTAVAWAASAASLSSARLGRLGDVEDFARRAAGAEHPGLLRFTVGLALITTLLMDDDAEGAERIAQQYTDFAELQQPGRAIGEVLLAEVRLARGDFAGAATLLGPASVTLDRTGYSWGPLSLMLSATALARLGELAEAAKVLSRAESRHGTKSALFAPELGIARAWRLAAGRDEHGAVAAARQAAGMAERSGQRAVAVLCWRDAALLGDGRALAPLQNLAAVVDCTAARAAVRAAQRDR
>LR134355.1|VEG46557.1|1174385_1175456_+|succinyl-diaminopimelate-desuccinylase
MDRLDLHADPVALTAALVDIPSESRDEARLADAVEAALREQTVGFEVIRSGDAVLARTNRGLPSRVLLAGHLDTVPIADNLPSRIDGDRMYGCGTSDMKSGDAVFLHLAATVADPAHDLTLVFYDCEEIEAAANGLGRIERELPDWLRADVAVLGEPTGGFIEAGCQGTLRVVVSADGTRAHSARSWMGDNAIHKLGAVLARLTDYQPRRVDIDGCEYREGLSAVRIDGGVAGNVIPDAASVTVNFRFAPDRSPQQALAHVHEVFEGLPVRIEQTDSAAGALPGLGQPAAAALVAAAGGQVRAKYGWTDVSRFAALGIPALNYGPGDPNLAHRRDENVEIAQITAVTETLRAYLSR
>LR134355.1|VEG46555.1|1173365_1174352_-|transferase
MGTTRRKPAPVACSTVTGASGFGLATLAADGSVLDTWFPAPELGSFDSTGTQRDPEGAPAELAALTGRDEDRGTETVLVRTTIADLDAKAVDTYDVYLRLHLFSHCLVAPHKLNAEGFFGLLTNVVWTNHGPCAVEGFETVRAKLRRRGPVTVYGVDKFPRMVDYVVPKGVRIADADRVRLGAHLAAGTTVMHEGFVNFNAGTLGSSMVEGRISAGVVVDDGSDIGGGASIMGTLSGGGSEVISVGKRCLLGANSGLGISLGDDCVVEAGLYITAGTKVATPDDKSVKARSLSGANNMLFRRNSVSGAVEVVARGGHGITLNEDLHAN
>LR134355.1|VEG46553.1|1173011_1173359_+|lactoylglutathione-lyase-family-protein
MGLTFAEICIDARDPASLGLWWAQVLGWPHHTDSDGDVGLTPPAGSGPPWQFLTVADDKVVKNRLHLDFVPDDQQAEVDRLVSLGARHVDIGQGDESWVVLADPEGNEFCVLAAE
>LR134355.1|VEG46551.1|1171602_1173021_+|Fatty-acid-CoA-ligase-FadD36
MLLASLNPAAVAGGADLSDAVTIGDTALSRSDLVGAATSVAERVGGASRVAILATPSVTTVLAVTGCLIAGVPFVPVPADVGAAERTHILTDSGAQAWLGELPADTGGLQHVPVRLHARSWHRYVEPDSDAPAYIMYTSGTTGAPKGVQTSRRAVAADIDALAAAWQWTPEDTLVHGLPLFHVHGLVLGLLGSLRIGNRFVHTGKPTPDGYAQAAEKSGGTLFFGVPTVWSRVVSDAAAATALRSARLLVSGSAALPVPVFDRLVSLTGHAPVERYGSTESLITLSTLVDGDRRPGWVGLPLDGVQTRLVDDGGAPVPHDGETIGHLHVRGPMLFDGYLNREAATAEVLGDDGWYRTGDVAVIDDGGMHRIVGRESVDLIKTGGHRVGAGEIETALLGHPGVDEVAVVGVPDDDLGQRIVAYVVGDTDPDSLIQFVAEQLSVHKRPREVRLVGELPRNAMGKVLKKELAQWD
>LR134355.1|VEG46549.1|1171033_1171573_-|NTP-pyrophosphohydrolase
MDPIERLSSRTVYRNDWMTVREDQIRRPDGSPGLYGVIDKPDYALVIARDGDRFMLVEQYRYPLGLRRWEFPQGAAPGQLPLAPLELAARELREETGLRAESMIELGLLDVAAGMSSQRGRVFLATGLTEGRHEREHEEQDMRCAWFPRADLEAMIRRGDITDAQTIAAWTLLRLSGHD
>LR134355.1|VEG46547.1|1170368_1170887_-|putative-secreted-protein
MSARRLRSALRGCPALGIVVGLVAGLLLAGASPAQAAPQAWTGQYSMVTYASQKGGTSVAARQSEADFGAVFVVSTSCSGGACVATAHGPASSNPTVPNPLRYNWDGQQWKATYDWAWQCAADGAESQWSPARSFTYYAPHSDGSLRGMWHTDIASGACRGSVVMPVAAIPA
>LR134355.1|VEG46545.1|1169393_1170368_+|proline-dehydrogenase
MASAFETLARPAILAASRATRLQRAVERLPVTRRVVRRFVPGETIEAVLGAVADLRATRRLVSIDHLGEDVTDLAAAEANVAAYLRLLDGLAGRDGGVGDGVDDGVAPLEVSLKLSALGQALGRDGERVAYENAHTICGRADEHEVWVTVDAEDHTTTDTRLAIVAKLRADFDSVGTVIQAYLHRSEADCRELADAGARVRLCKGAYDEPASVAYRGRDEVTAHYLRCLRVLIDGPGYPMVASHDPAVLDAVPALLRESGRGADDFEYQMLYGIRTDEQQRLADDGNTVRVYVPYGTQWYGYFIRRLAERPANLMFFLRALAGR
>LR134355.1|VEG46543.1|1167753_1169391_+|Delta-1-pyrroline-5-carboxylate-dehydrogenase
MDAITGITEVPLPHNEPVHDYAPGSPERDRLTTALVALADEPIDLPHVIGGKRTMGDGRQIRVVQPHRHSALLGTLTNAEHADADAAVTAAMAARADWAAMPFDERAAVFLRAADLMAGPWRERIAAATMLGQSKTAYQAEIDAPCELVDFWRFNVAFARDIMARQPNSSPGVWNRTDYRPLDGFVYAVTPFNFTAIAGNLPTAPALMGNTVVWKPSVTQTLAAYLTLQLLEAAGLPPGVINLLTGDGLAVSEVVLADPRLAGIHFTGSTGTFQHLWREVGANIERYHSYPRLVGETGGKDFVVAHASARPDVLRTALIRGAFDYQGQKCSAASRAFIPRSVWQRMGDDFLAATEALRYGDVTDLDNYGGALIDERAFAKNVKAIERAKDAPGVTVAVGGDYDDSTGYFVRPTVLLSDDPGDEAFATEYFGPILAVHVFPDEQFDDILGVVDAGAKYALTGAVIADDRAAIATASQRLRFAAGNFYVNDKPTGAVVGQQPFGGSRASGTNDKAGSPLNLLRWTSARSLKETFVPPTEHGYPHMGA
>LR134355.1|VEG46565.1|1179948_1180824_+|dihydropteroate-synthase
MQSTFLGKPVAGDRALIMAIVNRTPDSFYDRGATFTDEAAKSAVHRVVEEGADVVDIGGVKAGPGQVVDADEEIARVVPFIEWLRAAYPEQVISVDTWRASVAKLACAAGADLINDTWAGADPGLPEVAAEFGAGLVCSHTGGAVPRTRPFRVNYGTTSRGVVDDVIREVTAAAEHAVSVGVDRDAILIDPTHDFGKNTHHSLSLLRHLKDLVNTGWPVLMALSNKDFVGETLGVGLTERLEGTLAATALAAADGARMFRVHEVGPTRRVLDMVASIQGRRQPTRTVRGLA
>LR134355.1|VEG46567.1|1180820_1181765_+|glycosyl-transferase
MTTTPELSAQNASPGDTWCSDHSWSRPSWTIAELVAAKRGRTISVVLPALNEEETVASVVGSISPMLGGLIDELVVLDSGSTDDTEIRAVTAGARVVSREQALPEVPPQPGKGEVLWRSLAATTGDIVVFIDSDLIDPDPMFVPRLVGPILTGENIHLVKGYYRRPLKVSGEEDTNGGGRVTELVARPLLAALRPELGSVLQPLGGEYAATRELLTALPFAPGYGVEIGLLIDTYDRLGLAAIAQVNLGVRAHRNRPVTELAVMSRQVIATLLTRCGVPDSGVGLTQFFADGDGFTPRTSTVSLQDRPPMNTLR
>LR134355.1|VEG46569.1|1181842_1182205_+|DivIVA-domain-containing-protein
MVLLYLVVLVLVAVVLFGVASVIFGRGEQLPPLPRGTTATVLPASGITGADVDDVKFAQTLRGYKTSEVDWVLERLGAELDSLRGELAILRGVHGELDADPDPDGDDEPTDADRSRQDAR
>LR134355.1|VEG46572.1|1182201_1182786_+|DNA-3-methyladenine-glycosylase-I-TagA
MSAAEDGRTRCGWAELASAADAQLYRDYHDQEWGRPLRGTVPLFERISLEAFQSGLSWLTILKKRENFRAAFDGFDVETVAGYGEVDVARLMADAGIVRNRAKIDATIANARAIAELDGDLSELLWSFAPAPRPRPASLAEVAAKTTESAAMAKELKRRGFRFVGPTTAYALMQATGMVDDHVVTCWVPTVEAV
>LR134355.1|VEG46574.1|1182902_1183070_+|Conserved-exported-protein-of-uncharacterised-function
MAAMKPRTGDGPLEATKEGRGIVMRVPLEGGGRLVVELTPDEAAALGEELKNVTS
>LR134355.1|VEG46576.1|1183085_1184240_-|glycogen-synthase
MTREYPPEVYGGAGVHVTELVAQLRRLCEVDVHCMGAPRPGVTVAQPDPGLADANAALATLSADLVMANDAAQATVVHSHTWYTGMAGHVAALLHGVPHVVTAHSLEPLRPWKAEQLGGGYRVSSWVESTALGAAAAVIAVSSGMREDVLRVYPELDPGRVHVVHNGIDTDVWHPVSPAEVAEESVLAGLGVDPSRPMVAFVGRITRQKGVAHLVAAAHRFAPEVQLVLCAGAPDTPEIAAETAAAVAELSAARSGVFWVREMLPIADIREILSAADVFVCPSVYEPLGIVNLEALACATPVVASDVGGIPEVVDDGSTGTLVHYDAADPRAFESGLTEAVNALVADPARAAAYGRAGRRRCIEEFSWSRVAEQTLEIYRKVSS
>LR134355.1|VEG46578.1|1184388_1185603_+|glucose-1-phosphate-adenylyltransferase
MREAPHVLGIVLAGGEGKRLYPLTADRAKPAVPFGGGYRLIDFVLSNLVNARYLRICVLTQYKSHSLDRHISQNWRLSGLAGEYITPVPAQQRLGPRWYTGSADAIYQSMNLIYDEDPDYIVIFGADHVYRMDPEQMVQQHIESGAGATVAGIRVPRAEATAFGCIDADDSGRIRQFIEKPADPPGTPDDPEQAFVSMGNYIFTTKVLIDAIRADAEDDHSDHDMGGDIIPRLVADGMASVYDFSNNEVPGATERDHGYWRDVGTLDAFYDAHMDLVSVHPIFNLYNKRWPIRGGSENLAPAKFVNGGSAQESVVGAGSIISAASVRNSVLSSNVAIDDGAIVEGSVLMPGVRVGRGAVVRKAILDKNVVVGPGEMVGVDLQKDRERFSISAGGIVAVGKGIWI
>LR134355.1|VEG46580.1|1185690_1186329_-|transmembrane-protein
MEQLLTGLGLSTAAGLNAYIPMLMLGVLARFTEIVSLPQGWSWLENGWVLTIVAVLLVVEVVADKVPALDSINDTVQTFVRPAAGGIVFGSGTAAQTAAVSDPGQWAQSGQWVPVLIGVVVALVVSLTKSAVRPAANVATAGVAAPVLSTVEDVASFGLVFVALLLPLLVLVILAALIWAGWRLWRRIRRRKKDARYAPPVDVADDWHEPQR
>LR134355.1|VEG46582.1|1186368_1187043_-|isoprenylcysteine-carboxyl-methyltransferase-(icmt)-family-protein
MNLNLRAVAASVVGLVATVALLFWPAGTFAYWQGWALIAVMVALSTPYTVHLATRHPQVLERRLRVGPAAETRTIQRLAVFGLQASVLAAMVLSAFDHRFGWSHVPVWLCVVGLGLTAVGLGASMLVVLQNSWAAGTIEIQTGQELVARGLYGIVRHPMYSGATLMLVGIPLGLGSFWGLLPGLLGVVALIVRTVDEEKMLVQDLPGYPDYRARVRYRMVPYLW
>LR134355.1|VEG46584.1|1187121_1188744_-|putative-exporter-of-polyketide-antibiotics
MTATAPARRPARHQAPPRGSALTGTWSVLLLALRRDRLRLTIWIGAVILLVAYTPGALELAYPDEAARIARIDLLKTPAAMMLAGPMFGINETDMGVMMATELTLTLIVAASILAVLTVLRHTRAEEESGAAELVLASVVGRDARTAAALLLAAGVNAVLAALMTTALTLNGFAPLDSAGLALGVGAAAMVFAAVAAVTGQLWRQSRTATGAALAVLAIAVLVRGVGDVIDSSGSALSWFSPIAWTQQMRPFADLRWWPLLLLVGLTMALGALAAVLQNRRQYDAGTFPSTGERPNARPVGGVLGLHLTLQRGQVLGWSVGLFLAGLCVGSLTNSMLEAAEGNDLITRMLAADGTDGVYTTMTQFLAAAASAFTVAAVLRLAADERTGLAEPVLAGAVSRWRWLLTAVAAAVVGSTVLMLAAGAGNGLGAGLALREPATVLRLTAAGLAYVPALVAMAGVAALAVALRLTWIGWAAVTFVVATLYLGALLRLPQWLIDLSPVGQITAPRDLSVLTLVALTAVGAVLTVLAGYLYRNRDAT

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	NC_008712	Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence	118685-118709	3	0.88
LR134355_1	1.2|26464|26|LR134355|PILER-CR	26464-26489	26	NC_011044	Mycobacterium phage Nigel, complete genome	4612-4637	4	0.846
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	NZ_CP035419	Leisingera sp. NJS204 plasmid unnamed2, complete sequence	130517-130541	4	0.84
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	NZ_CP038239	Leisingera sp. NJS201 plasmid unnamed5, complete sequence	74336-74360	4	0.84
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	NZ_CP022416	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence	274466-274490	4	0.84
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1718169-1718193	4	0.84
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	155668-155692	4	0.84
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	NZ_CP044217	Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence	174344-174368	4	0.84
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	60388-60412	4	0.84
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	MH576962	Streptomyces phage Satis, complete genome	13591-13615	4	0.84
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	MK620894	Streptomyces phage Kradal, complete genome	13595-13619	4	0.84
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	MT110073	Stenotrophomonas phage vB_SmaS_DLP_3, complete genome	26738-26762	4	0.84
LR134355_3	3.1|3643589|25|LR134355|CRISPRCasFinder	3643589-3643613	25	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1825886-1825910	5	0.8

1. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 3, identity: 0.88

tcatctcggcggtggccatccccgg	CRISPR spacer
caatctcggcggtggccatcccggg	Protospacer
. ******************** **

2. spacer 1.2|26464|26|LR134355|PILER-CR matches to NC_011044 (Mycobacterium phage Nigel, complete genome) position: , mismatch: 4, identity: 0.846

accctggcgcggtgggtagttcgggt	CRISPR spacer
atcctggcgcggtgggttgctcgggg	Protospacer
*.*************** *.***** 

3. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to NZ_CP035419 (Leisingera sp. NJS204 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
ccatctcggcggtggcaatgcccga	Protospacer
.*************** ** ****.

4. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to NZ_CP038239 (Leisingera sp. NJS201 plasmid unnamed5, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
ccatctcggcggtggcaatgcccga	Protospacer
.*************** ** ****.

5. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to NZ_CP022416 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
acatctcggccgtggcgatccccga	Protospacer
 ********* ***** *******.

6. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
ggatctcgccggtggccatccgcgg	Protospacer
  ****** ************ ***

7. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
acatctcggcggtggcgatgcccga	Protospacer
 *************** ** ****.

8. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to NZ_CP044217 (Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
atatctcggcggtggcgatcccccg	Protospacer
 .************** ****** *

9. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
tcatctcggcggtggccttcgccac	Protospacer
***************** ** **. 

10. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
gcatctcgtcggtgaccatccccgt	Protospacer
 ******* *****.********* 

11. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
gcatctcgtcggtgaccatccccgt	Protospacer
 ******* *****.********* 

12. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 4, identity: 0.84

tcatctcggcggtggccatccccgg	CRISPR spacer
tcatcttggcggtggccatccgtcg	Protospacer
******.************** . *

13. spacer 3.1|3643589|25|LR134355|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 5, identity: 0.8

tcatctcggcggtggccatccccgg	CRISPR spacer
cgtgctcggcggtggcgatccccgg	Protospacer
.   ************ ********