CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134354	Bifidobacterium longum subsp. infantis strain NCTC11817 genome assembly, chromosome: 1	0 crisprs	c2c9_V-U4,DEDDh,WYL,cas14j,cas3	0	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

283017 : 340544

Bacillus_phage(22.22%)

integrase,transposase,tRNA

attL 308968:308982|attR 324093:324107

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG39988.1\|283017_283254_+\|transposase	putative transposase	NA	NA	NA	NA
VEG39990.1\|283301_283994_-	Uncharacterised protein	NA	NA	NA	NA
VEG39992.1\|284019_284724_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	9.6e-24	31.0
VEG39994.1\|284725_285496_-	ABC-2 type transporter	NA	NA	NA	NA
VEG39998.1\|285492_286419_-	ABC transporter	W6JKT0	Anomala_cuprea_entomopoxvirus	9.7e-16	28.3
VEG40001.1\|286871_287576_+	LuxR family two component transcriptional regulator	NA	NA	NA	NA
VEG40003.1\|287587_288754_+	Signal transduction histidine kinase-like protein	NA	NA	NA	NA
VEG40005.1\|288887_290093_+	transporter, major facilitator family protein	NA	NA	NA	NA
VEG40007.1\|290688_291906_+	major facilitator superfamily protein	NA	NA	NA	NA
VEG40009.1\|292015_293365_+	alpha-L-fucosidase	NA	NA	NA	NA
VEG40011.1\|293692_293812_+	Uncharacterised protein	NA	NA	NA	NA
VEG40013.1\|294077_294812_+	glycerol facilitator-aquaporin	NA	NA	NA	NA
VEG40015.1\|294895_297562_-	znta1	E4ZFI9	Streptococcus_phage	2.1e-42	25.4
VEG40017.1\|297672_297954_+	nrea	NA	NA	NA	NA
VEG40019.1\|298160_299585_+	protein	NA	NA	NA	NA
VEG40021.1\|299581_300211_+	protein	NA	NA	NA	NA
VEG40023.1\|300304_301153_+	spou3	NA	NA	NA	NA
VEG40025.1\|301587_302556_-	protein	NA	NA	NA	NA
VEG40027.1\|303087_303438_+\|tRNA	glutamyl-tRNA(Gln) amidotransferase subunit C	NA	NA	NA	NA
VEG40029.1\|303441_304983_+\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit A	NA	NA	NA	NA
VEG40031.1\|305008_306508_+\|tRNA	glutamyl-tRNA(gln) amidotransferase subunit B GatB	NA	NA	NA	NA
VEG40033.1\|306803_307868_+	riml1	NA	NA	NA	NA
VEG40035.1\|307878_308193_+	cytosolic protein	NA	NA	NA	NA
VEG40037.1\|308361_310233_+	histidine acid phosphatase	A0A218MNG5	uncultured_virus	5.3e-21	29.3
308968:308982	attL	NA	NA	NA	NA
VEG40039.1\|310446_312060_+	monoamine oxidase	NA	NA	NA	NA
VEG40041.1\|312293_314330_+	transcription termination factor Rho	NA	NA	NA	NA
VEG40043.1\|314562_315681_-	periplasmic binding protein/LacI transcriptional regulator	NA	NA	NA	NA
VEG40045.1\|315843_317289_-	sugar (glycoside-Pentoside-Hexuronide) transporter	NA	NA	NA	NA
VEG40047.1\|317362_319183_-	glycoside hydrolase family 2, sugar binding	NA	NA	NA	NA
VEG40049.1\|319548_320034_-\|transposase	truncated transposase	NA	NA	NA	NA
VEG40051.1\|320057_321440_-\|transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	9.1e-26	26.2
VEG40053.1\|321550_323014_+\|integrase	phage integrase family protein	NA	NA	NA	NA
VEG40055.1\|323021_323303_+\|transposase	truncated transposase	A0A1B1P773	Bacillus_phage	9.4e-15	48.8
VEG40057.1\|323380_323770_+	chorismate mutase	NA	NA	NA	NA
VEG40058.1\|323891_325934_+	protein	NA	NA	NA	NA
324093:324107	attR	NA	NA	NA	NA
VEG40059.1\|326291_329027_-\|tRNA	valyl-tRNA synthetase	A0A2K9KZB8	Tupanvirus	2.3e-158	37.2
VEG40060.1\|329170_330697_-	ddpa3	NA	NA	NA	NA
VEG40061.1\|330757_331444_-	nth	NA	NA	NA	NA
VEG40062.1\|331502_332303_-	putative response regulator	W8CYM9	Bacillus_phage	2.5e-12	32.1
VEG40063.1\|332464_333169_-	protein	NA	NA	NA	NA
VEG40065.1\|333278_333857_-	membrane protein	NA	NA	NA	NA
VEG40068.1\|334030_334525_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	2.2e-30	48.1
VEG40070.1\|334752_336993_-	dexa	NA	NA	NA	NA
VEG40072.1\|337235_339200_+	protein	NA	NA	NA	NA
VEG40074.1\|339468_340161_+	alpha/beta superfamily hydrolase	NA	NA	NA	NA
VEG40076.1\|340394_340544_+\|transposase	ISXoo11 transposase	NA	NA	NA	NA

DBSCAN-SWA_2

702938 : 762262

Bacillus_phage(18.18%)

integrase,transposase,tRNA

attL 688664:688679|attR 749227:749242

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
688664:688679	attL	NA	NA	NA	NA
VEG40747.1\|702938_703526_+\|integrase	putative site-specific integrase-resolvase	F9VHY9	Thermus_phage	1.0e-23	37.6
VEG40751.1\|703518_704823_+\|transposase	transposase, IS605 OrfB family	A0A7P9	Microcystis_virus	8.0e-40	36.3
VEG40753.1\|704960_706238_+	glutamate--cysteine ligase	NA	NA	NA	NA
VEG40755.1\|706343_706856_+	putative beta-glucosidase	NA	NA	NA	NA
VEG40757.1\|706903_707191_+	nucleotidyltransferase domain protein	NA	NA	NA	NA
VEG40759.1\|707177_707579_+	nucleotidyltransferase substrate-binding family protein	NA	NA	NA	NA
VEG40761.1\|707589_708795_+	beta-1,3-exoglucanase	NA	NA	NA	NA
VEG40763.1\|709322_710678_+\|integrase	integrase catalytic subunit	A0A1B1P773	Bacillus_phage	7.2e-44	36.3
VEG40765.1\|711431_712019_-	TetR family transcriptional regulator	NA	NA	NA	NA
VEG40767.1\|712235_714506_+	beta-glucosidase	NA	NA	NA	NA
VEG40769.1\|714765_716991_+	nucleoside-diphosphate-sugar epimerase and GAF domain-containing protein	NA	NA	NA	NA
VEG40771.1\|716987_717902_+	membrane protein	NA	NA	NA	NA
VEG40773.1\|717898_719776_+	membrane protein	NA	NA	NA	NA
VEG40775.1\|719772_721191_+	group 1 glycosyl transferase	NA	NA	NA	NA
VEG40777.1\|721192_722731_+	Predicted membrane protein	NA	NA	NA	NA
VEG40779.1\|722734_724546_+	membrane lipoprotein lipid attachment site	NA	NA	NA	NA
VEG40781.1\|724538_725363_+	VTC domain-containing protein	NA	NA	NA	NA
VEG40783.1\|725455_726121_+	Uncharacterised protein	NA	NA	NA	NA
VEG40785.1\|726154_728323_+	diguanylate cyclase	A0A2D0WBV8	Bordetella_phage	6.0e-08	30.8
VEG40787.1\|728628_730587_+	ABC transporter	W8CYL7	Bacillus_phage	1.1e-40	28.5
VEG40789.1\|730583_732599_+	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.2e-21	31.6
VEG40791.1\|732778_733819_+	periplasmic binding protein/LacI transcriptional regulator	NA	NA	NA	NA
VEG40793.1\|733987_734926_+	Purine nucleosidase	NA	NA	NA	NA
VEG40795.1\|734965_736381_+	major facilitator superfamily protein	NA	NA	NA	NA
VEG40797.1\|736377_737628_+	sugar kinase	NA	NA	NA	NA
VEG40799.1\|737879_738890_+	lacr-type transcription regulator	NA	NA	NA	NA
VEG40801.1\|739138_739897_+	putative transcriptional regulator	NA	NA	NA	NA
VEG40803.1\|740037_740949_+	Uncharacterised protein	NA	NA	NA	NA
VEG40805.1\|740945_741890_+	ROK family protein	NA	NA	NA	NA
VEG40807.1\|741949_742633_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
VEG40809.1\|742690_744973_-	putative sialidase	NA	NA	NA	NA
VEG40811.1\|745304_746873_+	extracellular solute-binding protein, family 5	NA	NA	NA	NA
VEG40813.1\|747024_747981_+	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA
VEG40815.1\|747982_750127_+	oligopeptide/dipeptide ABC transporter ATPase	G9BWD6	Planktothrix_phage	1.0e-15	34.9
749227:749242	attR	NA	NA	NA	NA
VEG40817.1\|750123_750978_+	ABC transporter	G9BWD6	Planktothrix_phage	3.9e-19	31.3
VEG40819.1\|751124_752093_+	dihydrodipicolinate synthetase	NA	NA	NA	NA
VEG40821.1\|752161_753373_-	maly2	NA	NA	NA	NA
VEG40823.1\|753889_757201_+\|tRNA	isoleucyl-tRNA synthetase	L7RFX8	Acanthamoeba_polyphaga_moumouvirus	2.3e-144	32.3
VEG40825.1\|757649_758015_+	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA
VEG40827.1\|758002_758929_+	ABC-type spermidine/putrescine transport system permease II-like protein	NA	NA	NA	NA
VEG40829.1\|758925_760044_+	spermidine/putrescine ABC transporter, ATP-binding protein PotA	G3M9Y6	Bacillus_virus	2.8e-33	39.7
VEG40831.1\|760114_760942_+	type I phosphodiesterase/nucleotide pyrophosphatase domain protein	NA	NA	NA	NA
VEG40833.1\|761059_761452_-\|transposase	transposase	A0A0N9STL0	Staphylococcus_phage	3.4e-10	33.6
VEG40835.1\|761573_762062_-\|transposase	IS3 family transposase	NA	NA	NA	NA
VEG40837.1\|762130_762262_-\|transposase	IS150 putative transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1163975 : 1186002

Paenibacillus_phage(20.0%)

bacteriocin,integrase,transposase

attL 1158419:1158433|attR 1174536:1174550

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1158419:1158433	attL	NA	NA	NA	NA
VEG41480.1\|1163975_1165163_+\|transposase	transposase, mutator type	A0A0K2CZ57	Paenibacillus_phage	1.2e-55	35.1
VEG41482.1\|1165428_1165575_+	Uncharacterised protein	NA	NA	NA	NA
VEG41484.1\|1165603_1166503_-	Uncharacterised protein	NA	NA	NA	NA
VEG41486.1\|1166936_1167128_+	Uncharacterised protein	NA	NA	NA	NA
VEG41488.1\|1167130_1167898_+	filamentation induced by cAMP protein fic	S4TP71	Salmonella_phage	7.3e-09	28.0
VEG41490.1\|1168045_1169389_-\|integrase	phage integrase family protein	NA	NA	NA	NA
VEG41492.1\|1171303_1172257_+	Abi family protein	A0A0S2MYH0	Enterococcus_phage	3.2e-22	28.0
VEG41493.1\|1172112_1172421_-	Uncharacterised protein	NA	NA	NA	NA
VEG41495.1\|1173624_1173873_+	protein	NA	NA	NA	NA
VEG41497.1\|1173985_1175248_-	major facilitator superfamily protein	NA	NA	NA	NA
1174536:1174550	attR	NA	NA	NA	NA
VEG41499.1\|1175416_1175854_-\|transposase	transposase	NA	NA	NA	NA
VEG41501.1\|1176110_1176242_+	Uncharacterised protein	NA	NA	NA	NA
VEG41503.1\|1176249_1176687_+	Uncharacterised protein	NA	NA	NA	NA
VEG41505.1\|1176779_1177013_+	Uncharacterised protein	NA	NA	NA	NA
VEG41507.1\|1177405_1177666_+	Uncharacterised protein	NA	NA	NA	NA
VEG41509.1\|1177704_1178973_-\|transposase	transposase	W5R8L2	Staphylococcus_phage	2.7e-32	34.3
VEG41511.1\|1179557_1180208_-	ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	1.6e-12	29.8
VEG41513.1\|1180210_1182166_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEG41515.1\|1183675_1184581_+\|transposase	putative transposase	NA	NA	NA	NA
VEG41517.1\|1185258_1186002_+\|bacteriocin	bacteriocin ABC transporter, permease protein subunit	NA	NA	NA	NA

DBSCAN-SWA_4

1296429 : 1309226

Bifidobacterium_phage(63.64%)

capsid,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG41726.1\|1296429_1297329_-	Uncharacterised protein	A0A2H4P936	Arthrobacter_phage	2.1e-07	32.2
VEG41728.1\|1297342_1298242_-	phage protein	NA	NA	NA	NA
VEG41730.1\|1298238_1301592_-\|tail	phage tail tape measure protein, TP901 family	I3NL90	Bifidobacterium_phage	2.0e-204	48.3
VEG41732.1\|1301608_1301905_-\|terminase	phage terminase protein large subunit-like protein	I3NL91	Bifidobacterium_phage	5.4e-37	69.4
VEG41734.1\|1301976_1302471_-	DNAase primase	I3NL92	Bifidobacterium_phage	8.7e-56	69.3
VEG41736.1\|1302572_1302815_-	Uncharacterised protein	NA	NA	NA	NA
VEG41738.1\|1302826_1303363_-	gp28	I3NL93	Bifidobacterium_phage	1.8e-83	87.5
VEG41740.1\|1303435_1303852_-	transcriptional regulator	I3NL94	Bifidobacterium_phage	6.7e-41	60.9
VEG41742.1\|1303848_1304247_-	Uncharacterised protein	I3NL95	Bifidobacterium_phage	1.2e-34	61.4
VEG41744.1\|1304239_1304665_-	phage associated protein	I3NL96	Bifidobacterium_phage	8.3e-39	86.4
VEG41746.1\|1304630_1305050_-	phage protein	A0A2H4J276	uncultured_Caudovirales_phage	1.7e-07	32.4
VEG41748.1\|1305071_1305182_-	Uncharacterised protein	NA	NA	NA	NA
VEG41750.1\|1305195_1306083_-\|capsid	phage major capsid protein, HK97	V5R986	Arthrobacter_phage	2.0e-26	31.5
VEG41752.1\|1306111_1306780_-	Uncharacterised protein	NA	NA	NA	NA
VEG41754.1\|1306852_1307845_-	Uncharacterised protein	NA	NA	NA	NA
VEG41756.1\|1307792_1309226_-	phage protein	A0A2D1GK98	Mycobacterium_phage	1.7e-51	32.1

DBSCAN-SWA_5

1805813 : 1868939

Lactococcus_phage(20.0%)

terminase,holin,protease,integrase,transposase

attL 1801405:1801423|attR 1865744:1865762

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1801405:1801423	attL	NA	NA	NA	NA
VEG42928.1\|1805813_1806035_-\|holin	phage holin-like protein	A0A059NT58	Lactococcus_phage	7.4e-07	48.3
VEG42930.1\|1806094_1807213_-	glycoside hydrolase family protein	A0A2P0ZLG2	Lactobacillus_phage	2.2e-22	34.1
VEG42932.1\|1807360_1807693_-	Uncharacterised protein	NA	NA	NA	NA
VEG42934.1\|1807724_1808519_+	Uncharacterised protein	NA	NA	NA	NA
VEG42935.1\|1808534_1808720_-	Uncharacterised protein	NA	NA	NA	NA
VEG42937.1\|1808677_1809283_-\|terminase	putative phage terminase	A0A1D8ETI8	Propionibacterium_phage	6.8e-18	61.3
VEG42939.1\|1809242_1809629_-	Uncharacterised protein	NA	NA	NA	NA
VEG42941.1\|1809731_1810064_-	HNH nuclease	M1PFG7	Streptococcus_phage	9.1e-17	54.7
VEG42943.1\|1810047_1810236_-	Uncharacterised protein	NA	NA	NA	NA
VEG42945.1\|1810289_1810862_-	Uncharacterised protein	NA	NA	NA	NA
VEG42947.1\|1810833_1811892_-	Uncharacterised protein	NA	NA	NA	NA
VEG42949.1\|1812058_1813165_+\|transposase	transposase	Q9MBM9	Staphylococcus_prophage	7.7e-36	31.4
VEG42951.1\|1813510_1815022_+	ABC transporter ATP-binding protein	A0A1B0RXA0	Streptococcus_phage	1.1e-19	27.5
VEG42953.1\|1815187_1815706_+	N-acetyltransferase GCN5	NA	NA	NA	NA
VEG42956.1\|1816055_1816703_-	HAD phosphoserine phosphatase-like hydrolase, family IB	NA	NA	NA	NA
VEG42958.1\|1816991_1821374_+	putative cell surface protein	NA	NA	NA	NA
VEG42960.1\|1822289_1822706_-	Uncharacterised protein	NA	NA	NA	NA
VEG42962.1\|1822831_1823098_+	Uncharacterised protein	NA	NA	NA	NA
VEG42964.1\|1823126_1823972_+	Uncharacterised protein	NA	NA	NA	NA
VEG42966.1\|1824000_1824375_+	PrgI family protein	NA	NA	NA	NA
VEG42968.1\|1824346_1826572_-	IstB domain-containing protein ATP-binding protein	A0A059NT77	Lactococcus_phage	4.0e-31	36.9
VEG42970.1\|1826674_1827229_-\|integrase	prophage LambdaBa04, site-specific recombinase, phage integrase family	I3NLE2	Bifidobacterium_phage	6.0e-29	42.6
VEG42972.1\|1827574_1828276_+	TetR family transcriptional regulator	NA	NA	NA	NA
VEG42974.1\|1828432_1829704_+	transporter, major facilitator family protein	NA	NA	NA	NA
VEG42976.1\|1830356_1831613_-	HipA-like C-terminal domain protein	NA	NA	NA	NA
VEG42978.1\|1831786_1832032_+	RelB antitoxin	NA	NA	NA	NA
VEG42980.1\|1832018_1832342_+	PemK-like protein	NA	NA	NA	NA
VEG42982.1\|1832558_1833173_-	cupin domain-containing protein	NA	NA	NA	NA
VEG42984.1\|1833266_1834136_-	methyltransferase domain protein	NA	NA	NA	NA
VEG42986.1\|1834232_1834739_+	membrane protein	NA	NA	NA	NA
VEG42988.1\|1835268_1836534_+	Fic/DOC family protein	Q9AZ49	Lactococcus_phage	1.5e-46	30.9
VEG42990.1\|1837006_1837312_+\|transposase	putative transposase	NA	NA	NA	NA
VEG42992.1\|1837397_1839641_-	putative excinuclease ABC, A subunit	A0A1B1IVR3	uncultured_Mediterranean_phage	2.9e-130	32.5
VEG42994.1\|1839645_1841028_-	MATE efflux family protein	NA	NA	NA	NA
VEG42996.1\|1841052_1841166_-	Uncharacterised protein	NA	NA	NA	NA
VEG42998.1\|1841415_1841658_+	TfoX, C-terminal domain-containing protein	NA	NA	NA	NA
VEG43000.1\|1841700_1842561_+	bacterial transcription activator, effector-binding domain protein	NA	NA	NA	NA
VEG43002.1\|1842741_1843842_-	GTP-dependent nucleic acid-binding protein EngD	NA	NA	NA	NA
VEG43004.1\|1843975_1844797_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
VEG43006.1\|1844858_1846337_-	proline iminopeptidase	NA	NA	NA	NA
VEG43008.1\|1846436_1848824_+	two-component sensor kinase	NA	NA	NA	NA
VEG43010.1\|1848898_1849768_+	two-component response regulator	NA	NA	NA	NA
VEG43012.1\|1849803_1852659_-	putative transport protein	NA	NA	NA	NA
VEG43014.1\|1852687_1853602_-	ABC transporter	G9BWD6	Planktothrix_phage	1.1e-30	39.3
VEG43016.1\|1854081_1855398_-	O-acetylhomoserine aminocarboxypropyltransferase	A0A0B5JD48	Pandoravirus	1.3e-13	25.5
VEG43018.1\|1855873_1856746_+	pyridoxal/pyridoxine/pyridoxamine kinase	NA	NA	NA	NA
VEG43020.1\|1856981_1857485_+	endonuclease	NA	NA	NA	NA
VEG43022.1\|1857539_1859075_+	sms1	NA	NA	NA	NA
VEG43024.1\|1859071_1860772_+	SMF family protein	NA	NA	NA	NA
VEG43026.1\|1860828_1862694_+	succinate dehydrogenase or fumarate reductase, flavoprotein subunit	NA	NA	NA	NA
VEG43028.1\|1862789_1863755_+	frdb	NA	NA	NA	NA
VEG43030.1\|1863848_1864514_+	methyltransferase	NA	NA	NA	NA
VEG43032.1\|1864559_1865501_-	DNA uptake protein	A0A1D8KU27	Synechococcus_phage	6.0e-21	39.1
VEG43034.1\|1865611_1867048_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.3e-38	33.9
1865744:1865762	attR	NA	NA	NA	NA
VEG43036.1\|1867559_1868939_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.8e-112	48.7

DBSCAN-SWA_6

1974022 : 1985896

Propionibacterium_phage(25.0%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG43254.1\|1974022_1975459_+	phage Terminase	A0A1D8EU80	Propionibacterium_phage	5.8e-108	45.7
VEG43256.1\|1975458_1976952_+\|portal	phage portal protein	A0A068F3B8	Mycobacterium_phage	3.8e-62	33.9
VEG43258.1\|1976893_1978396_+	phage protein	A0A1D8ETG0	Propionibacterium_phage	1.9e-29	36.0
VEG43260.1\|1978376_1978568_+	Uncharacterised protein	NA	NA	NA	NA
VEG43262.1\|1978654_1979119_+	phage helicase	NA	NA	NA	NA
VEG43264.1\|1979152_1980094_+	phage structural protein	Q1A0S2	Mycobacterium_virus	7.6e-93	56.7
VEG43266.1\|1980093_1980657_+	Head fiber protein	I3NL98	Bifidobacterium_phage	5.2e-12	49.5
VEG43268.1\|1980670_1981078_+	phage protein	A0A1P8BKC7	Lactococcus_phage	4.0e-06	29.6
VEG43270.1\|1981074_1981419_+	phage protein	NA	NA	NA	NA
VEG43272.1\|1981422_1981698_+	Uncharacterised protein	NA	NA	NA	NA
VEG43274.1\|1981697_1982075_+	phage protein	NA	NA	NA	NA
VEG43276.1\|1982090_1982690_+	prophage LambdaSa03, structural protein	M1PRW6	Streptococcus_phage	6.7e-18	34.7
VEG43278.1\|1982849_1983215_+	Uncharacterised protein	NA	NA	NA	NA
VEG43280.1\|1983214_1983661_+	Uncharacterised protein	NA	NA	NA	NA
VEG43282.1\|1983685_1985896_+	phage tape measure protein	A0A1P8BLF5	Lactococcus_phage	3.6e-69	40.8

DBSCAN-SWA_7

2052216 : 2109951

Bacillus_phage(23.08%)

integrase,transposase,tRNA

attL 2085172:2085197|attR 2109952:2109977

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG43409.1\|2052216_2054826_-\|tRNA	phenylalanine--tRNA ligase, beta subunit	A0A1L3IZU3	BeAn_58058_virus	1.2e-05	29.1
VEG43411.1\|2054833_2055889_-\|tRNA	phenylalanyl-tRNA synthase alpha subunit	A0A2K9L3A8	Tupanvirus	2.5e-28	34.7
VEG43413.1\|2055954_2056833_-	rRNA methylase	NA	NA	NA	NA
VEG43415.1\|2056945_2057773_-	cobalt transport protein	NA	NA	NA	NA
VEG43417.1\|2057769_2059245_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	5.9e-15	32.8
VEG43419.1\|2059244_2059844_-	ABC-type cobalt transport system, permease protein	NA	NA	NA	NA
VEG43421.1\|2060144_2061512_-	peptidase dimerization domain-containing protein	NA	NA	NA	NA
VEG43423.1\|2061603_2062227_+	protein	NA	NA	NA	NA
VEG43425.1\|2062375_2063866_+	lpd1	A0A2K5B2C5	Erysipelothrix_phage	7.0e-32	28.4
VEG43427.1\|2063949_2064732_+	protein	NA	NA	NA	NA
VEG43429.1\|2065051_2066488_+	glutamine synthetase	NA	NA	NA	NA
VEG43431.1\|2066565_2066841_-	truncated beta-glucuronidase	NA	NA	NA	NA
VEG43433.1\|2066948_2068055_-	auxin efflux carrier family protein	NA	NA	NA	NA
VEG43435.1\|2068245_2068575_-	galactoside O-acetyltransferase	NA	NA	NA	NA
VEG43437.1\|2068601_2068769_-	galactoside O-acetyltransferase	NA	NA	NA	NA
VEG43439.1\|2068811_2069342_-	transcriptional regulator, PadR-like family	NA	NA	NA	NA
VEG43441.1\|2069604_2070312_-	HhH-GPD family protein	NA	NA	NA	NA
VEG43443.1\|2070557_2071916_-	Na+ driven multidrug efflux pump	NA	NA	NA	NA
VEG43445.1\|2071973_2074562_-	excinuclease ABC subunit A-like protein	A0A1B1IVR3	uncultured_Mediterranean_phage	1.1e-104	33.8
VEG43447.1\|2074911_2076669_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
VEG43449.1\|2077243_2077651_+	LysR family transcriptional regulator	NA	NA	NA	NA
VEG43451.1\|2077695_2077992_+	Uncharacterised protein	NA	NA	NA	NA
VEG43453.1\|2078413_2079679_-	beta-galactosidase	A0A0B5JD41	Pandoravirus	2.7e-48	30.9
VEG43455.1\|2079962_2081048_+	RnfABCDGE type electron transport complex subunit D	NA	NA	NA	NA
VEG43457.1\|2081104_2083009_+	sialic acidspecific 9-O-acetylesterase	NA	NA	NA	NA
VEG43459.1\|2083025_2083745_-	histidine kinase	W8CYF6	Bacillus_phage	2.0e-40	38.6
VEG43461.1\|2083815_2085171_+\|integrase	integrase catalytic subunit	A0A1B1P773	Bacillus_phage	7.2e-44	36.3
2085172:2085197	attL	NA	NA	NA	NA
VEG43463.1\|2085330_2086692_-	putative AAA+ superfamily ATPase	NA	NA	NA	NA
VEG43465.1\|2087110_2089420_-	putative ABC transporter permease	NA	NA	NA	NA
VEG43467.1\|2089429_2090131_-	ABC transporter	G9BWD6	Planktothrix_phage	4.1e-35	36.9
VEG43469.1\|2090103_2090727_-	transcriptional regulator, TetR family	NA	NA	NA	NA
VEG43471.1\|2091135_2092413_+\|transposase	transposase IS116/IS110/IS902 family protein	NA	NA	NA	NA
VEG43473.1\|2092620_2093664_-	alcohol dehydrogenase	NA	NA	NA	NA
VEG43475.1\|2093704_2093848_-	MerR family transcriptional regulator	NA	NA	NA	NA
VEG43477.1\|2093884_2093983_-	MerR family transcriptional regulator	NA	NA	NA	NA
VEG43479.1\|2094232_2094769_+	CrcB-like protein	NA	NA	NA	NA
VEG43481.1\|2094768_2095134_+	putative protein CrcB	NA	NA	NA	NA
VEG43483.1\|2095214_2095703_+	GtrA-like protein	NA	NA	NA	NA
VEG43485.1\|2095787_2096852_-	membrane protein	NA	NA	NA	NA
VEG43487.1\|2097122_2097596_-	transcriptional regulator	NA	NA	NA	NA
VEG43489.1\|2097805_2099005_-	Protein Translation Elongation Factor Tu (EF-TU)	A0A2H4UVR3	Bodo_saltans_virus	1.9e-08	24.0
VEG43491.1\|2099177_2101301_-	translation elongation factor G	E4ZFJ7	Streptococcus_phage	2.3e-60	26.7
VEG43493.1\|2101333_2101804_-	30S ribosomal protein S7	NA	NA	NA	NA
VEG43495.1\|2101809_2102181_-	30S ribosomal protein S12	NA	NA	NA	NA
VEG43497.1\|2102182_2103139_+	Uncharacterised protein	NA	NA	NA	NA
VEG43499.1\|2103177_2103351_-\|transposase	putative truncated transposase	NA	NA	NA	NA
VEG43501.1\|2103541_2104420_+	Abi family protein	NA	NA	NA	NA
VEG43503.1\|2104650_2105916_-\|transposase	transposase IS116/IS110/IS902 family protein	NA	NA	NA	NA
VEG43505.1\|2106303_2106810_-	IstB domain-containing protein ATP-binding protein	U5N3V8	Enterobacteria_phage	1.1e-24	40.7
VEG43507.1\|2107102_2108089_-\|transposase	putative truncated transposase	NA	NA	NA	NA
VEG43509.1\|2108595_2109951_+\|integrase	integrase catalytic subunit	A0A1B1P773	Bacillus_phage	7.2e-44	36.3
2109952:2109977	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2248709 : 2381880

109

Lactobacillus_phage(11.76%)

protease,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG43730.1\|2248709_2251223_+\|protease	transglutaminase-like cysteine protease	NA	NA	NA	NA
VEG43732.1\|2251296_2251485_+	putative phosphatase	NA	NA	NA	NA
VEG43734.1\|2251511_2252123_+	protein	NA	NA	NA	NA
VEG43736.1\|2252138_2252777_+\|head	forkhead domain protein	NA	NA	NA	NA
VEG43738.1\|2252935_2256973_-	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	5.3e-58	26.8
VEG43740.1\|2257140_2260704_-	DNA-directed RNA polymerase subunit beta RpoB	A0A1B1ISA9	uncultured_Mediterranean_phage	6.8e-33	22.0
VEG43742.1\|2260940_2261663_-	protein	NA	NA	NA	NA
VEG43744.1\|2261727_2262684_-	putative A/G-specific adenine glycosylase	NA	NA	NA	NA
VEG43746.1\|2262704_2263367_+	RNA methyltransferase	NA	NA	NA	NA
VEG43748.1\|2264017_2265382_-	protein	NA	NA	NA	NA
VEG43750.1\|2265517_2265790_-	ACT domain-containing protein	NA	NA	NA	NA
VEG43752.1\|2265958_2267869_-	glycosyl hydrolase family protein	NA	NA	NA	NA
VEG43754.1\|2267967_2269059_-	periplasmic-binding protein/LacI transcriptional regulator	NA	NA	NA	NA
VEG43756.1\|2269086_2269764_-	Drug resistance transporter, EmrB/QacA subfamily	NA	NA	NA	NA
VEG43758.1\|2269825_2270761_-	sugar ABC transporter permease	NA	NA	NA	NA
VEG43760.1\|2270773_2271700_-	polysaccharide ABC transporter permease	NA	NA	NA	NA
VEG43762.1\|2271851_2273459_-	ABC transporter	NA	NA	NA	NA
VEG43764.1\|2274072_2275323_-	galactokinase GalK	NA	NA	NA	NA
VEG43766.1\|2275339_2276590_-	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA
VEG43768.1\|2276594_2277308_-	DeoR-type transcriptional regulator	NA	NA	NA	NA
VEG43770.1\|2277752_2278904_+	dihydroorotate oxidase	NA	NA	NA	NA
VEG43772.1\|2279071_2280454_-	putative oxidoreductase	NA	NA	NA	NA
VEG43774.1\|2280675_2282964_-	family 51 glycosyl transferase	NA	NA	NA	NA
VEG43776.1\|2283067_2283865_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
VEG43778.1\|2283861_2284947_-	lipoate protein ligase	NA	NA	NA	NA
VEG43780.1\|2285003_2286035_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
VEG43782.1\|2286239_2288756_-	ptrb	NA	NA	NA	NA
VEG43784.1\|2288816_2290148_-	protein	NA	NA	NA	NA
VEG43786.1\|2290304_2290718_-	glycine cleavage system H protein	NA	NA	NA	NA
VEG43788.1\|2290743_2292036_-	npy1	NA	NA	NA	NA
VEG43790.1\|2292045_2292903_-	pepr1	NA	NA	NA	NA
VEG43792.1\|2293030_2293693_-	protein	NA	NA	NA	NA
VEG43794.1\|2293860_2294232_+	thioredoxin domain-containing protein	A0A1J0GW78	Streptomyces_phage	1.9e-10	38.6
VEG43796.1\|2294406_2295390_+	G5 domain-containing protein	D6PSZ3	Lactobacillus_phage	2.6e-19	48.2
VEG43798.1\|2295669_2296233_+	transcriptional regulator, XRE family	NA	NA	NA	NA
VEG43800.1\|2296210_2297566_+	HipA domain-containing protein	NA	NA	NA	NA
VEG43802.1\|2297589_2298996_-	sugar-binding domain-containing protein	NA	NA	NA	NA
VEG43804.1\|2299220_2300639_-	chain length determinant protein	NA	NA	NA	NA
VEG43806.1\|2301103_2302495_+	protein	NA	NA	NA	NA
VEG43808.1\|2303138_2303855_+	Abi family protein	NA	NA	NA	NA
VEG43810.1\|2304230_2305418_-\|transposase	transposase	Q9MBM9	Staphylococcus_prophage	1.7e-33	33.5
VEG43812.1\|2305460_2306603_+	proline symporter	NA	NA	NA	NA
VEG43813.1\|2306746_2307136_-	ABC transporter	NA	NA	NA	NA
VEG43814.1\|2307132_2307627_-	transcriptional regulator, XRE family	NA	NA	NA	NA
VEG43815.1\|2307690_2308227_-	Uncharacterised protein	NA	NA	NA	NA
VEG43816.1\|2309760_2310624_+	Uncharacterised protein	NA	NA	NA	NA
VEG43817.1\|2310728_2313533_-	Uncharacterised protein	NA	NA	NA	NA
VEG43819.1\|2313766_2314180_+\|transposase	IS3 family transposase	NA	NA	NA	NA
VEG43821.1\|2314305_2315244_+\|transposase	putative truncated transposase	NA	NA	NA	NA
VEG43823.1\|2315206_2315767_+\|transposase	putative truncated transposase	NA	NA	NA	NA
VEG43825.1\|2316034_2316514_+	IstB domain-containing protein ATP-binding protein	NA	NA	NA	NA
VEG43827.1\|2316926_2318192_+\|transposase	transposase IS116/IS110/IS902 family protein	NA	NA	NA	NA
VEG43829.1\|2318009_2318600_-\|transposase	IS3 family transposase	NA	NA	NA	NA
VEG43831.1\|2318916_2320452_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
VEG43833.1\|2320463_2321159_-	Uncharacterised protein	NA	NA	NA	NA
VEG43835.1\|2321429_2322506_+	family 2 glycosyl transferase	A0A1V0SAH6	Catovirus	1.4e-13	34.2
VEG43837.1\|2322449_2323511_-\|transposase	transposase	A0A220NQR7	Corynebacterium_phage	5.0e-32	34.5
VEG43839.1\|2324107_2324989_-	glycosyl transferase family protein	NA	NA	NA	NA
VEG43841.1\|2325013_2325946_-	capsular polysaccharide biosynthesis protein	A0A0N7KVT5	Yellowstone_lake_phycodnavirus	2.0e-08	26.3
VEG43843.1\|2325948_2326959_-	putative glycosyltransferase	NA	NA	NA	NA
VEG43845.1\|2326978_2328103_-	group 1 glycosyl transferase	NA	NA	NA	NA
VEG43847.1\|2328136_2329297_-	Uncharacterised protein	NA	NA	NA	NA
VEG43849.1\|2329357_2330452_-	family 2 glycosyl transferase	NA	NA	NA	NA
VEG43851.1\|2330596_2331415_-	glycosyltransferase	NA	NA	NA	NA
VEG43853.1\|2331512_2331983_+\|transposase	putative transposase	NA	NA	NA	NA
VEG43855.1\|2332057_2332663_-	putative low molecular weight protein-tyrosine-phosphatase	NA	NA	NA	NA
VEG43857.1\|2332962_2334165_-\|transposase	transposase IS116/IS110/IS902 family protein	NA	NA	NA	NA
VEG43860.1\|2334518_2336237_+	galactosyl transferase CpsD	NA	NA	NA	NA
VEG43862.1\|2336686_2337121_+	protein	NA	NA	NA	NA
VEG43864.1\|2337678_2339142_-	putative transcriptional regulator	NA	NA	NA	NA
VEG43866.1\|2339477_2339780_-\|transposase	putative transposase	NA	NA	NA	NA
VEG43868.1\|2339870_2341088_+	protein	NA	NA	NA	NA
VEG43870.1\|2341891_2344348_+	metallophosphoesterase	NA	NA	NA	NA
VEG43872.1\|2344490_2346839_+	beta-galactosidase	NA	NA	NA	NA
VEG43874.1\|2347013_2348471_-	proteasome component	NA	NA	NA	NA
VEG43876.1\|2348470_2348674_-	ubiquitin-like protein Pup	NA	NA	NA	NA
VEG43878.1\|2348765_2349662_-	inositol monophosphatase	NA	NA	NA	NA
VEG43880.1\|2349673_2351341_-	proteasome component	NA	NA	NA	NA
VEG43882.1\|2351362_2352928_-	rpt1	A0A1B2RW50	Lymphocystis_disease_virus	1.3e-31	42.5
VEG43884.1\|2352988_2353687_-	membrane protein	NA	NA	NA	NA
VEG43886.1\|2353737_2354460_+	phosphoserine phosphatase	NA	NA	NA	NA
VEG43888.1\|2354499_2356812_+	primosome assembly protein PriA	NA	NA	NA	NA
VEG43890.1\|2356870_2357575_+	HAD hydrolase, family IA, variant 3 domain protein	NA	NA	NA	NA
VEG43892.1\|2357598_2358585_+	fmt	NA	NA	NA	NA
VEG43894.1\|2358677_2360447_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
VEG43896.1\|2360742_2361027_+	rpoz	NA	NA	NA	NA
VEG43898.1\|2361304_2362525_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.2e-124	56.8
VEG43900.1\|2362840_2364208_+	efflux ABC transporter permease	NA	NA	NA	NA
VEG43901.1\|2364204_2365428_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
VEG43903.1\|2365440_2366076_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.6e-24	32.3
VEG43905.1\|2366237_2366756_-	putative low molecular weight protein-tyrosine-phosphatase	NA	NA	NA	NA
VEG43907.1\|2366879_2367542_-	fola	A0A0A8JB64	Ralstonia_phage	3.6e-20	43.6
VEG43909.1\|2367547_2367652_-	Uncharacterised protein	NA	NA	NA	NA
VEG43911.1\|2367651_2368524_-	thya	A0A2R4A1R4	Microbacterium_phage	2.9e-102	65.5
VEG43913.1\|2368651_2369065_+	OsmC-like protein	NA	NA	NA	NA
VEG43915.1\|2369126_2370164_-	universal stress family protein	NA	NA	NA	NA
VEG43917.1\|2370334_2371072_-	NLP/P60 protein	D2KRB9	Lactobacillus_phage	8.6e-07	35.5
VEG43919.1\|2371226_2371871_-	NLP/P60 protein	NA	NA	NA	NA
VEG43921.1\|2372185_2373142_-	surface antigen protein	A0A1P8CMP9	Staphylococcus_phage	2.8e-10	40.6
VEG43923.1\|2373241_2373466_+	Uncharacterised protein	NA	NA	NA	NA
VEG43925.1\|2373534_2374677_+	serc	NA	NA	NA	NA
VEG43927.1\|2374801_2375062_+	Uncharacterised protein	NA	NA	NA	NA
VEG43929.1\|2375068_2376253_-	histidine kinase sensor of two component system	NA	NA	NA	NA
VEG43931.1\|2376452_2377127_+	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA
VEG43933.1\|2377485_2378226_-	phosphoglycerate mutase	NA	NA	NA	NA
VEG43935.1\|2378766_2379093_+	Resolvase helix-turn-helix domain-containing protein	E5FFF9	Burkholderia_phage	6.4e-15	40.2
VEG43937.1\|2379308_2379689_+	Uncharacterised protein	NA	NA	NA	NA
VEG43939.1\|2379781_2380894_-	Cytochrome P450-like protein	NA	NA	NA	NA
VEG43941.1\|2380911_2381880_-\|protease	putative ATP-dependent Clp protease ATP-binding subunit	A0A1C3S747	Escherichia_phage	2.3e-31	37.3

DBSCAN-SWA_9

2800563 : 2810340

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG44885.1\|2800563_2801691_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-22	33.8
VEG44888.1\|2801811_2802039_-	Uncharacterised protein	NA	NA	NA	NA
VEG44891.1\|2802049_2803225_-	wcaa2	NA	NA	NA	NA
VEG44894.1\|2803288_2804281_-	ribonucleoside-diphosphate reductase subunit beta NrdF	R4TBI6	Mycobacterium_phage	2.7e-141	77.6
VEG44897.1\|2804293_2804389_-	protein	NA	NA	NA	NA
VEG44900.1\|2804509_2806705_-	ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.7e-183	47.0
VEG44903.1\|2806820_2807273_-	nrdI protein	R4JF54	Bacillus_phage	2.3e-10	32.5
VEG44906.1\|2807269_2807536_-	glutaredoxin-like protein NrdH	V5R9U9	Mycobacterium_phage	3.9e-10	41.8
VEG44909.1\|2808129_2810340_+	protein kinase	A0A2I2L395	Orpheovirus	3.1e-12	26.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134354

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection