CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134357	Actinomyces israelii strain NCTC12972 genome assembly, chromosome: 1	2 crisprs	csa3,DEDDh,DinG,WYL,cas4,cas3,csb1gr7,csb2gr5,csb3,cas1,cas2	3	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134357_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134357_5

2314300-2315128

Unclear

Consensus_repeat	Method
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	PILER-CR
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CRISPRCasFinder
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CRT

11 spacers

cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

The CRISPR arrays of LR134357_5

>merge|LR134357|5|2314300-2315128|PILER-CR,CRISPRCasFinder,CRT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCCAGACCGGCCAGCAATGCTGGCGTCGACGGCAAGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCCTCGGCACGGCCGCCGCTGTTACCGCCCTGTTGTGGGGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCAAGTCGTTAGACTTAGAATCCGACATTGTAGGCGTTGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCCCGAAATTATCCGTCGTGCGCTCACGGACTTCCTGGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCAAAAGTATAGTGGGAAACAAAGCCTGGACAAACGTTGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCTATGCGGCGGGCACGTCCTTGCTCACCATCTTGGAGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCGAGCGCAAGCACCACCAGCCCCACGATCACGGACGCCGAGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCAACGAAATCGCGTTCACGTGCGATCAATTCAGACTTGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCCCAGTGGGGTTCAGCATATCCCGCCGTCACATCCCCGGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCAAGAGGGGACTCTCGCTCCCACCCTCACCCTCATCGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCCACCTGCCTGGACACGCCGTGCTCATATGGACGCAGTGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCC

>LR134357|5|1|2314300-2315127|PILER-CR
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CAGACCGGCCAGCAATGCTGGCGTCGACGGCAA
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CTCGGCACGGCCGCCGCTGTTACCGCCCTGTTGTGGG
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AAGTCGTTAGACTTAGAATCCGACATTGTAGGCGTT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CCGAAATTATCCGTCGTGCGCTCACGGACTTCCTG
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AAAAGTATAGTGGGAAACAAAGCCTGGACAAACGTT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	TATGCGGCGGGCACGTCCTTGCTCACCATCTTGGA
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	GAGCGCAAGCACCACCAGCCCCACGATCACGGACGCCGA
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AACGAAATCGCGTTCACGTGCGATCAATTCAGACTT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CCAGTGGGGTTCAGCATATCCCGCCGTCACATCCCCG
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AAGAGGGGACTCTCGCTCCCACCCTCACCCTCATC
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CACCTGCCTGGACACGCCGTGCTCATATGGACGCAGT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC

>LR134357|5|5|2314300-2315128|CRISPRCasFinder
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CAGACCGGCCAGCAATGCTGGCGTCGACGGCAA
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CTCGGCACGGCCGCCGCTGTTACCGCCCTGTTGTGGG
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AAGTCGTTAGACTTAGAATCCGACATTGTAGGCGTT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CCGAAATTATCCGTCGTGCGCTCACGGACTTCCTG
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AAAAGTATAGTGGGAAACAAAGCCTGGACAAACGTT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	TATGCGGCGGGCACGTCCTTGCTCACCATCTTGGA
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	GAGCGCAAGCACCACCAGCCCCACGATCACGGACGCCGA
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AACGAAATCGCGTTCACGTGCGATCAATTCAGACTT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CCAGTGGGGTTCAGCATATCCCGCCGTCACATCCCCG
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AAGAGGGGACTCTCGCTCCCACCCTCACCCTCATC
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CACCTGCCTGGACACGCCGTGCTCATATGGACGCAGT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCC

>LR134357|5|1|2314300-2315127|CRT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CAGACCGGCCAGCAATGCTGGCGTCGACGGCAA
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CTCGGCACGGCCGCCGCTGTTACCGCCCTGTTGTGGG
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AAGTCGTTAGACTTAGAATCCGACATTGTAGGCGTT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CCGAAATTATCCGTCGTGCGCTCACGGACTTCCTG
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AAAAGTATAGTGGGAAACAAAGCCTGGACAAACGTT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	TATGCGGCGGGCACGTCCTTGCTCACCATCTTGGA
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	GAGCGCAAGCACCACCAGCCCCACGATCACGGACGCCGA
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AACGAAATCGCGTTCACGTGCGATCAATTCAGACTT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CCAGTGGGGTTCAGCATATCCCGCCGTCACATCCCCG
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	AAGAGGGGACTCTCGCTCCCACCCTCACCCTCATC
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CACCTGCCTGGACACGCCGTGCTCATATGGACGCAGT
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134357.1\|VEG56162.1\|2300637_2301069_+\|Glutaredoxin-like-protein-nrdH	unknown	unknown	gnl\|CDD\|131249
LR134357.1\|VEG56190.1\|2316901_2317573_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134357.1\|VEG56186.1\|2315847_2316351_-\|Sporulation-initiation-inhibitor-protein-soj	unknown	unknown	gnl\|CDD\|224113
LR134357.1\|VEG56200.1\|2322047_2323688_-\|Bacterial-protein-of-uncharacterised-function-(DUF885)	unknown	unknown	gnl\|CDD\|377577
LR134357.1\|VEG56168.1\|2303815_2305276_-\|Divergent-AAA-domain	unknown	unknown	gnl\|CDD\|225420
LR134357.1\|VEG56180.1\|2313822_2314122_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LR134357.1\|VEG56166.1\|2301490_2303644_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha-2	unknown	unknown	gnl\|CDD\|236179
LR134357.1\|VEG56170.1\|2305734_2306937_+\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
LR134357.1\|VEG56176.1\|2311184_2312225_+\|Uncharacterised-protein	csb3	cd09764_csb3_CAS-I-U	gnl\|CDD\|187733
LR134357.1\|VEG56184.1\|2315506_2315851_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134357.1\|VEG56172.1\|2306936_2308484_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
LR134357.1\|VEG56182.1\|2315228_2315462_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|375921
LR134357.1\|VEG56194.1\|2318768_2320199_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379450
LR134357.1\|VEG56164.1\|2301086_2301506_+\|ribonucleotide-reductase-stimulatory-protein	unknown	unknown	gnl\|CDD\|179603
LR134357.1\|VEG56178.1\|2312215_2313823_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LR134357.1\|VEG56188.1\|2316581_2316881_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134357.1\|VEG56192.1\|2317794_2318769_+\|Ribonucleoside-diphosphate-reductase-subunit-beta-nrdF2	unknown	unknown	gnl\|CDD\|275027
LR134357.1\|VEG56174.1\|2308489_2311180_+\|helicase-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
LR134357.1\|VEG56198.1\|2321168_2321948_+\|Probable-nitrite-transporter	unknown	unknown	gnl\|CDD\|376497
LR134357.1\|VEG56196.1\|2320242_2321028_+\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134357.1\|VEG56162.1\|2300637_2301069_+\|Glutaredoxin-like-protein-nrdH	gnl\|CDD\|131249	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.	4.74673e-35
LR134357.1\|VEG56186.1\|2315847_2316351_-\|Sporulation-initiation-inhibitor-protein-soj	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.37227e-28
LR134357.1\|VEG56200.1\|2322047_2323688_-\|Bacterial-protein-of-uncharacterised-function-(DUF885)	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	1.56932e-177
LR134357.1\|VEG56168.1\|2303815_2305276_-\|Divergent-AAA-domain	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	3.59701e-51
LR134357.1\|VEG56180.1\|2313822_2314122_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.08966e-20
LR134357.1\|VEG56166.1\|2301490_2303644_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha-2	gnl\|CDD\|236179	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
LR134357.1\|VEG56170.1\|2305734_2306937_+\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.78775e-35
LR134357.1\|VEG56176.1\|2311184_2312225_+\|Uncharacterised-protein	gnl\|CDD\|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	5.02247e-76
LR134357.1\|VEG56172.1\|2306936_2308484_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	9.24901e-76
LR134357.1\|VEG56182.1\|2315228_2315462_-\|Uncharacterised-protein	gnl\|CDD\|375921	pfam18495, VbhA, Antitoxin VbhA. VbhT is a bacterial Fic protein of the mammalian pathogen B. schoenbuchensis7,8. It is composed of an N-terminal FIC domain and a C-terminal BID domain. FIC domains are known to catalyse adenylylation (also called AMPylation). This entry represents VbhA, an antitoxin that binds FIC domain (filamentation induced by cyclic AMP) of VbhT and inhibits its activity. It inhibits the adenylylation activity of VbhT by positioning close to the putative ATP-binding site, hence competing with ATP binding.	8.90964e-07
LR134357.1\|VEG56194.1\|2318768_2320199_+\|Uncharacterised-protein	gnl\|CDD\|379450	pfam14067, LssY_C, LssY C-terminus. This domain is found at the C-terminus of Legionella LssY proteins, which may be a part of the type I secretion system. This domain is functionally uncharacterized. This domain is found in bacteria, and is typically between 182 and 195 amino acids in length. It is often found in association with pfam09335 and PF01569. There are two completely conserved residues (P and W) that may be functionally important.	3.15629e-88
LR134357.1\|VEG56164.1\|2301086_2301506_+\|ribonucleotide-reductase-stimulatory-protein	gnl\|CDD\|179603	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI.	9.60301e-78
LR134357.1\|VEG56178.1\|2312215_2313823_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	9.1953e-92
LR134357.1\|VEG56192.1\|2317794_2318769_+\|Ribonucleoside-diphosphate-reductase-subunit-beta-nrdF2	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
LR134357.1\|VEG56174.1\|2308489_2311180_+\|helicase-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.44107e-84
LR134357.1\|VEG56198.1\|2321168_2321948_+\|Probable-nitrite-transporter	gnl\|CDD\|376497	pfam01226, Form_Nir_trans, Formate/nitrite transporter.	2.79334e-54

>LR134357.1|VEG56180.1|2313822_2314122_+|CRISPR-associated-endoribonuclease-Cas2
MRDDVRRLVVAYDVPSDRRRSKVAKKLLTYGDRIQYSVFVVDATPAKLLRMRDELNAIVKPDEDSILLCDVGLLSSVDNKRFSYVGLTRTITPDGPLIA
>LR134357.1|VEG56178.1|2312215_2313823_+|CRISPR-associated-endonuclease-Cas1
MELKASADPIPISLVLHTVFCPRRAWLESVGEHTDTMQMQAGTSAHRRVDDAKQSTPSEHRSVDLRSERLGLSGRCDVVEGLAGGPLTIVEYKATPVRNRPEVTEANRVQLALQRLCLEEMGYELAGTEVYFTGHRRRVEVELTAEDLVGAEALVGRTRELIAAEQAPAPLVEDRRCQWCSHASVCLPDEHRYEAVRRRVVAPAPDAQVVHLATPGSRASFRGGRLEVLKSGETLLSVPVERVLGLVVHGNADVSSALLRELCWRDRCVVWCSWSGRVVGWSRGADAPNGLQRVQQHVASSEGRLDIAQQMVSAKIANQATLLRRNGNAAEDVAVMRRLQREACEAHSLTELLGIEGEAAGAYFGSFATMLEGKAAGFAAERWRGRRRRPATDPANAALDYTYALLLGECVRGLVACGLDPHAGFLHSSSRNKPALALDLMEEFRAPVADSAVVRAFRNGELGEGDFLSVMRACRMTDRGRKQLIASFERRVETAFRHPVYGYDTTWRRCIEIQARMILGVIDGTQPAYKGVTVR
>LR134357.1|VEG56176.1|2311184_2312225_+|Uncharacterised-protein
MILTGTTSSALTTFGGLGLGLILEGAGASRVRVGWTDSLEPQLVVSAAGYDDDAVAAAVLQHAQSNAQADSWIQANLDSAPWGGQRAVFSPRIKKAEKTEQWMYLQKARHDGIDRLRALGGFGTELELIGALGEPAYWPVRMNEIKPDEGASRWEMKTRNRGEEFVGNRLRQLTAIVSKRSVEQVRDGLTGVSVVDEAYKGKRSDESRTSTGLTGPRFTDSALAWCALWGISCFPVLHQLGKASVTAAALPVGKYTPEYLVLPLLVGGHSLARWRSVLVSGQLHDCVGSSGVACAEAERWLLDHGVWALAVHPVMLGGSANAPERSLGECLEPKVLVVDGGQERWN
>LR134357.1|VEG56174.1|2308489_2311180_+|helicase-Cas3
MISVDEFADFFAAIHDGERPFAWQEELLHALVNDGCWPDQIAAPTGSGKSAVVEIHVFANALAACGQGARVPRRLAVVVNRRALTDAHADRAAQLQRLLKEAPDGGVVARVREALASLWVEGRNQSGPLMLAVMRGAAAIDRDWLDAPEACGVLCMTPAMWGSSLLFRSYGAWPFARPRLAGLLALDAAVVVDEAHLSRQLLVTARRVAELVGASAHKLGVPALQAVEMTATPTSNQGRVVAVTEQAVLKDSCLAARVGAPKSVLYVPTGTWPTNGKMTQKYLEVIVDQVATQVAEAQSWAATGPRTVGCVLNRVDSAIRVAQALRERGLRCRTWVGRMRPWDLKMMRREDPDLFTTVGSDQVDVLIATQTVEVGVDLDLAALVTELASGSAIAQRAGRVNRMARRQRGPVVVVGPELKAKLADDVLPYQAADLRSARAWVLERQAVGDLSPLAVVSAPPPAEEPRRILWQRPEPWDVNLWARTSQRLVIEPELDLWLRDDLDPEVDGVGVVLRELAQLPDSLACESLLRELEPQDEEVFPTNIGALRELVRRIAEVKSGPLERSVLWRDGAPFPSWQALVDQGEDKASRELRPGDLLVLDSGVPLLTENVVTSDGKEKGHAVPLAAFREFAGKGASLVSDVVGVVTDPEELKAFADLTEEEIAARLGGTIALPPGWQEGEAPAWVVVRDANTVSCEADQHSMLSARGRVGLEEHNAAVAQRALAFGRSLGVAEQVSGLLAEAGRWHDVGKADVRFQRALWRKDPEGCELLAKSGATNPKVIKRAWADSGLPGGWRHELASAAAYWDSCEAAGQPVEDRELVTRLVGTSHGRGRPMFDHSVEQAGPGPVEALAELIGEGEWESVVARTDRNWGPWGTAYLEGLLRAAGCTISAEGK
>LR134357.1|VEG56172.1|2306936_2308484_+|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MTSVGITARFPLGVYHGHAADGSADSFPTPLRLFSALVNSAYTGTTTGPDGALSAATLEALNWLENNPPRGLYLPPSSPVNPSQTSRVAYRKTGTIEKKQPKIAPKMISDGIALAGKFGWIWEEMPDSVREILARLCEDVPCLGEMDSPVVLEVSKAEPNWTWLPEATAFTPGGRRVPVPAVGRRAVLEALHQDSRPRKAPTESADRLGETSDAVRPFPVSIECTRVLHYAPRGLERPSMGSPWSDVLVFRTEAGAGVLPAEQRLDWCVGFHRALVSRIGDGTPSVITGRYPTDRSVPANRVAIQYLPESLLSLSNIKLDHPAPGVFLVMIPSDISTDDLNVLIAALAGMTYVTSRWGRLRLRRHDELVLTSEFWHAPAAGAVRLWSPTPVAVPEVTRQKGPWTFEDAILLSLGFVWRDRLEPVGKGTQGYRSLVKQVRERGAGVSWYRRTVKSPSSYAHRMPEGMVAQPYTAVLSSGELTGNQELVAIGQSRHLGGGLLAPVDLPAELAESLKR
>LR134357.1|VEG56170.1|2305734_2306937_+|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system
MSAVHVITLKHLQAACSPGGASVLTSVTKLEPAAGPHASVAPAKFSARGNSVFAYERRFYDGAPVNVVLIDSKQSQNNRGEAAIATAIADGDPILSRIPRIELVFPDGASFTDLDLPHRAFDGQIRAGAINGKSVTAAPEYRSLRDATVTHARPLLERSPMTLLLGGWDASRKSHQGRYRSILVGEIIGILADQEGAAEVNQSKRGGARIDPLGMHIDLPDKQRKAIADAQKAELSRKTYDGAVGPKGKPSNLGLGGIPPMLEQLGGVSCREIIRSHVLSFAALRALRFDSVTPQGDVACRMVLAALALNALARSDAELLLRANCDLVEAGPAVVTLDKRYGEKEEFSPLTIEQAQELLSEAIAYAEKEAGLVWDGSVLRVDGNPDVQEAAGDADRDEDA
>LR134357.1|VEG56168.1|2303815_2305276_-|Divergent-AAA-domain
MITTTNELQEALARLSLEGGDCLDLEVKTFSEYSAKSLGPTLCAFGNLPGGGSVLLGVNERGDAPVVGLDNAHDTAERATNQARSGLSVPLTVDVRVLTLDSREVAALNVSEAPVNQKPCTWNGKAYIRQYDGDYTMSLQEQQQLLRRHNRPRDDREPVPGTSRADLDDQAVKDFAISVRQTTPALRACTDAEILLRLNAITDSGEATVAGLYALGTYPQQHLPHLSLTAAIVSKQAEAKGERGRNRKDFTGALPQILDGAVEWVSQNIGSTLVVSRDGRSQTTFAIPLVAVREVVANALVHRDLSEATAGRAVELRLTDSGLVLTSPGGLWGLSVDQLGTPDGKSAVNEFLYTICRHVGGAGDRVIEAMGTGIRATRQALAEAGLEPPRFTDNGVRFTVRFPNHALHTYKDLAWLGSLDLAGLSAGQKEALLRMRSGAELSNSDYRQFAQVDSTTARAELGELVRRGLAERIGKHRGTRYRFPTA
>LR134357.1|VEG56166.1|2301490_2303644_+|Ribonucleoside-diphosphate-reductase-subunit-alpha-2
MADTLTDTGSETVPPELDYHALNAKLNLYDANGKIQFQADHDAARQYFLQHVNKNTVFFHDLEEKLEYLVEEGYYEQRVLDLYSPEFIKSAFKSAYAHKFRFETFLGAFKYYTSYTLKTFDGQRYLERFEDRVTMVALALGDGDEALAMDLIEEIMTGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALLLTNLREMGAPIKRIQNQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERFYGVPFADISVTEKYREMVDNPAIKKKKINAREFFQTLAELQFESGYPYIMFEDTVNRANPIKGKVIMSNLCSEILQVSEASELNEDLTYKHIGKDISCNLGSLNIAKTMDSPDFARTIRTAVRGLTAVSDQTSLPSAPSIDRGNRESHAIGLGQMNLHGYLARERVFYGSEEALDFTNVYFASVLFQALTASNELAVERGESFVGFEDSKYATGEFFEKYMTQDFVPVTARVKELFAKSSVHVPTRADWAELAEKIKKTGLYNRNLQAVPPTGSISYINNSTSSIHPIVSKVEIRKEGKIGRVYYPAAYMTNDNLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDVNKAQIYAWRKGIKTIYYIRLRQAALEGTEVQGCVSCML
>LR134357.1|VEG56164.1|2301086_2301506_+|ribonucleotide-reductase-stimulatory-protein
MALASDGPFVVYFSSTSENTHRFATKLGFRSARIPMLPREEPLVVDQPYVLLVPTYGGGNTRGAVPKQVIKFLNNEHNRMLCRAVISSGNTNFGEAYCIAGDIVSAKLGVPHMYKYELLGTPTDVERVKQGLDEFWQTL
>LR134357.1|VEG56162.1|2300637_2301069_+|Glutaredoxin-like-protein-nrdH
MHSLVADTSSWGAGGQPPLGVVSFLARVICPPWNYIHVVPESEGIASRLGQTLGRDSPEGTDMTITVYSKPNCVQCSATYRALDKAGLSYETVDISMDAEALEQVKSLGYAQAPVVMAGGDHWSGFRPDKIKAVVAAVEAVAI
>LR134357.1|VEG56182.1|2315228_2315462_-|Uncharacterised-protein
MTGMQLEERWPDLFEGLDEGQRDRIIEACADNWHEGWEPNREDLAFLVMRVRGQITTQEYLHRILKRAGVDAVAAHV
>LR134357.1|VEG56184.1|2315506_2315851_-|Uncharacterised-protein
MKPKPKPRKAITVPKATGPDPAELPAATNASKTSNAGQGEMRRLTVRISADDLGRARSAWRLVCARGAGDYPAFGAWVVAALNSATAEVEESLNGGESLAPTPAGVIPTGRTPR
>LR134357.1|VEG56186.1|2315847_2316351_-|Sporulation-initiation-inhibitor-protein-soj
MKCSSRKSCNEADNQPGREHCLRAALEGAAEDYDVVLIDCPPSLGTLTLACLTAASHVLVVTEPRASSVEGVDELMATINTVKRYYNPSLETLGVVVNKWRKDRLDREAWMDVLREVHGSLLLPERLPEREVVATAATNRVPVPRAEARDYTNALESIVELLTKENA
>LR134357.1|VEG56188.1|2316581_2316881_+|Uncharacterised-protein
MCQAVRGLASVILEQLGVPGYFERVSTKASSVYNTAYLGGIERVFAYAEAQEGSQLEPKAIDLLRSIDQCAAGTSTEIKGQGRQRSASAPQVRLSGESL
>LR134357.1|VEG56190.1|2316901_2317573_+|Uncharacterised-protein
MDKEQLASLVYMRPELPEDAEVPALAPEASLEEPDAEPDTPDPDDTAEADEDLEDPDEPKEDNEGFEWSARDKRWFAVAIIYAFICLPGMMFLGVQCAKALQRGWGEYQIEDYFDDSAIIEDASLTSGGDFLHGYYLQIEARLAPGVSDQDVCELLVGADKRFGKAKLRSIGKNELRVRLTGDIPSHKGELFTYVPFTGSWDGFTRKDGGGVCTRELHSVLGG
>LR134357.1|VEG56192.1|2317794_2318769_+|Ribonucleoside-diphosphate-reductase-subunit-beta-nrdF2
MPEPLKLIDRVQAINWNRLVDDKDLEVWDRLTGNFWLPEKVPLSNDVPSWATLNEAEKNMTTRVFTGLTLLDTIQGTVGAISLIPDARTPHEEAVYTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENEHLQRKAKIILSYYRGDDPEKRKVASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVQEASATRQQELKDYTFDLLMELYDNEEQYTEDLYDELGLTEDVKKFLRYNANKALMNLGYEALFPAESVDVNPAILASLSPNADENHDFFSGSGSSYVIGTAEATEDEDWDF
>LR134357.1|VEG56194.1|2318768_2320199_+|Uncharacterised-protein
MPGAQPQMHELPPTTEQEIVPRPRPTSPPVYHSGATKIGELGTRTWRLDDVVDAVFFVVSALLTLWLAWIFLSAGLYLRPRAVACALLFWAVLAYLALPRMHQVLTWLYVPDYFIGRTRTADGLLGDPVNLAVWGSEEAIHESMRAAGWVRADPITLRSSWGIIASSLMRRSYPAAPVSTLTLFGRKQNFAYQKEVEGNPAQRHHIRFWHAPEGWVLPGGKRVDWLAAATYDRAVGLSTLTFQVTHKIDANIDIERNFVVDEVLWANPEAKLYSWADFFTSYHDKNGGGDRVFTDGDLYVLDLSEVVTGKGAAELASSQEADAEADRRRPLALVAALVLMTLRVLLDTGDLVRKALYDRAALAQVELDPQELSQIDPAQAVRLVLAIIVVTVTLLTAILAVAVWRGHPRSRIALMAVLTLGVLADMSEISASGAGQAPVNVLLSCALGVLALLTISTRSCHRWVRERKEERSQLPA
>LR134357.1|VEG56196.1|2320242_2321028_+|Uncharacterised-protein
MSEQPEVPGGDTVRMGLPFNGVVPLWYEGENITWHHSLQADLSTLLGLGHIQTTRGPSPTPPGWSEQVEIGTLRYDDDGAPTLFLQAAAPTGRRAVNQAGDGAPIPLSGPLSPQEYMQSQVDDVAMAVHVGRLMIRAARDSAILLFTLRAPRDPEAHHLLSMPAEVDDDLVMHFHLGTLLEMEGGAWDQATRQDGMSLLDLDVPFEPLLVAGSNEGEPGLDAGGLVDMARPVVDCLLKPGFPFALGYSFILPEDATPTPAQ
>LR134357.1|VEG56198.1|2321168_2321948_+|Probable-nitrite-transporter
MLTLTENLQAQAKSAVARTDGASRLLPFLVSSMLAGAFVGIGGTFMLMAAGPFKAASSPATALISGPPFCVGLLLCIYGGAELGTSAMMTFAIGSFRKAITWLKAGRVLLLMLLGNLAGSMLLAALLWGTNILNSGNAAGAMLAAVVTTKGNLPLTVIFFRGIMCNILVCLTIWCVTRLSSEVAKAVAVFAIISAFVTCGFEHVVANMTFFSLGLFYGVDGASVTLALRNLLVSGIGNLVGGAIFVGAAYLLAARTEQH
>LR134357.1|VEG56200.1|2322047_2323688_-|Bacterial-protein-of-uncharacterised-function-(DUF885)
MARLAELSPEFAVYNGLPGRRGALDDHSPAGLAALTELSRATLRSLDQLQPADDVDRVTLAAMRERLGLELELAEAGENLRVLNNIASPAQSVRDLFDNLPTDTVGDWETFASCLRAVPGALKGYLSALGEAASRGDVAARRQVAAVIAQARDQAEASTSSYSVLTAQPTTGDGTTLPASLTEELREAAAAARAGYATFAEQLERELLPQAPTEDAVGRERYQRFSREFLGATVDLDETYEWGRERLAAIDAEQRQIAAELYGPGTTVRQALERLNADPSRLVHGTQALQEWMQATSDAAIAALDGTHFDIPSPLRTLECRIAPSQTGGIYYTGPSDDFSRPGRMWWSVPAGTADFATWQERTTVFHEGVPGHHLQCGMQTFLREELNSWRRLACWVSGHGEGWALYAERLMADLGFQADPGDRFGMLDSQRLRAARVVLDIGVHLGKERPAELAGLPGVGEGRWDAESAWAFLRHNVAMSEGFLRFELDRYLGWPGQAPSYAIGQRLWEQTRDAALAGGSSLKEFHMRALRLGSVGLEVLRQALA

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Crispr_ID: LR134357_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134357_6

2316322-2316428

Unclear

Consensus_repeat	Method
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CRISPRCasFinder

1 spacers

cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

The CRISPR arrays of LR134357_6

>merge|LR134357|6|2316322-2316428|CRISPRCasFinder
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGCCTGGTTTTGGCTGCTTCGAAGGTCTGGCAGATCAGGTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGCT

>LR134357|6|6|2316322-2316428|CRISPRCasFinder
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGGC	CTGGTTTTGGCTGCTTCGAAGGTCTGGCAGATCAG
GTTGCAGCTCTTTCGAGAGCTGCACTTCATTGAGCT

Protein	Signature genes	Signature genes Name	Protein_function
LR134357.1\|VEG56190.1\|2316901_2317573_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134357.1\|VEG56200.1\|2322047_2323688_-\|Bacterial-protein-of-uncharacterised-function-(DUF885)	unknown	unknown	gnl\|CDD\|377577
LR134357.1\|VEG56168.1\|2303815_2305276_-\|Divergent-AAA-domain	unknown	unknown	gnl\|CDD\|225420
LR134357.1\|VEG56180.1\|2313822_2314122_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LR134357.1\|VEG56166.1\|2301490_2303644_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha-2	unknown	unknown	gnl\|CDD\|236179
LR134357.1\|VEG56170.1\|2305734_2306937_+\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
LR134357.1\|VEG56202.1\|2323688_2324567_+\|Probable-low-molecular-weight-protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|319971
LR134357.1\|VEG56176.1\|2311184_2312225_+\|Uncharacterised-protein	csb3	cd09764_csb3_CAS-I-U	gnl\|CDD\|187733
LR134357.1\|VEG56184.1\|2315506_2315851_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134357.1\|VEG56172.1\|2306936_2308484_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
LR134357.1\|VEG56182.1\|2315228_2315462_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|375921
LR134357.1\|VEG56194.1\|2318768_2320199_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379450
LR134357.1\|VEG56192.1\|2317794_2318769_+\|Ribonucleoside-diphosphate-reductase-subunit-beta-nrdF2	unknown	unknown	gnl\|CDD\|275027
LR134357.1\|VEG56178.1\|2312215_2313823_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LR134357.1\|VEG56188.1\|2316581_2316881_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134357.1\|VEG56174.1\|2308489_2311180_+\|helicase-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
LR134357.1\|VEG56198.1\|2321168_2321948_+\|Probable-nitrite-transporter	unknown	unknown	gnl\|CDD\|376497
LR134357.1\|VEG56204.1\|2324592_2325810_-\|Alpha/beta-hydrolase-family	unknown	unknown	gnl\|CDD\|225176
LR134357.1\|VEG56206.1\|2325995_2327993_-\|Lipase-precursor	unknown	unknown	gnl\|CDD\|238861
LR134357.1\|VEG56196.1\|2320242_2321028_+\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134357.1\|VEG56200.1\|2322047_2323688_-\|Bacterial-protein-of-uncharacterised-function-(DUF885)	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	1.56932e-177
LR134357.1\|VEG56168.1\|2303815_2305276_-\|Divergent-AAA-domain	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	3.59701e-51
LR134357.1\|VEG56180.1\|2313822_2314122_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.08966e-20
LR134357.1\|VEG56166.1\|2301490_2303644_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha-2	gnl\|CDD\|236179	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
LR134357.1\|VEG56170.1\|2305734_2306937_+\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.78775e-35
LR134357.1\|VEG56202.1\|2323688_2324567_+\|Probable-low-molecular-weight-protein-tyrosine-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.06588e-48
LR134357.1\|VEG56176.1\|2311184_2312225_+\|Uncharacterised-protein	gnl\|CDD\|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	5.02247e-76
LR134357.1\|VEG56172.1\|2306936_2308484_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	9.24901e-76
LR134357.1\|VEG56182.1\|2315228_2315462_-\|Uncharacterised-protein	gnl\|CDD\|375921	pfam18495, VbhA, Antitoxin VbhA. VbhT is a bacterial Fic protein of the mammalian pathogen B. schoenbuchensis7,8. It is composed of an N-terminal FIC domain and a C-terminal BID domain. FIC domains are known to catalyse adenylylation (also called AMPylation). This entry represents VbhA, an antitoxin that binds FIC domain (filamentation induced by cyclic AMP) of VbhT and inhibits its activity. It inhibits the adenylylation activity of VbhT by positioning close to the putative ATP-binding site, hence competing with ATP binding.	8.90964e-07
LR134357.1\|VEG56194.1\|2318768_2320199_+\|Uncharacterised-protein	gnl\|CDD\|379450	pfam14067, LssY_C, LssY C-terminus. This domain is found at the C-terminus of Legionella LssY proteins, which may be a part of the type I secretion system. This domain is functionally uncharacterized. This domain is found in bacteria, and is typically between 182 and 195 amino acids in length. It is often found in association with pfam09335 and PF01569. There are two completely conserved residues (P and W) that may be functionally important.	3.15629e-88
LR134357.1\|VEG56192.1\|2317794_2318769_+\|Ribonucleoside-diphosphate-reductase-subunit-beta-nrdF2	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
LR134357.1\|VEG56178.1\|2312215_2313823_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	9.1953e-92
LR134357.1\|VEG56174.1\|2308489_2311180_+\|helicase-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.44107e-84
LR134357.1\|VEG56198.1\|2321168_2321948_+\|Probable-nitrite-transporter	gnl\|CDD\|376497	pfam01226, Form_Nir_trans, Formate/nitrite transporter.	2.79334e-54
LR134357.1\|VEG56204.1\|2324592_2325810_-\|Alpha/beta-hydrolase-family	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.05802e-21
LR134357.1\|VEG56206.1\|2325995_2327993_-\|Lipase-precursor	gnl\|CDD\|238861	cd01823, SEST_like, SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.	3.9319e-20

>LR134357.1|VEG56184.1|2315506_2315851_-|Uncharacterised-protein
MKPKPKPRKAITVPKATGPDPAELPAATNASKTSNAGQGEMRRLTVRISADDLGRARSAWRLVCARGAGDYPAFGAWVVAALNSATAEVEESLNGGESLAPTPAGVIPTGRTPR
>LR134357.1|VEG56182.1|2315228_2315462_-|Uncharacterised-protein
MTGMQLEERWPDLFEGLDEGQRDRIIEACADNWHEGWEPNREDLAFLVMRVRGQITTQEYLHRILKRAGVDAVAAHV
>LR134357.1|VEG56180.1|2313822_2314122_+|CRISPR-associated-endoribonuclease-Cas2
MRDDVRRLVVAYDVPSDRRRSKVAKKLLTYGDRIQYSVFVVDATPAKLLRMRDELNAIVKPDEDSILLCDVGLLSSVDNKRFSYVGLTRTITPDGPLIA
>LR134357.1|VEG56178.1|2312215_2313823_+|CRISPR-associated-endonuclease-Cas1
MELKASADPIPISLVLHTVFCPRRAWLESVGEHTDTMQMQAGTSAHRRVDDAKQSTPSEHRSVDLRSERLGLSGRCDVVEGLAGGPLTIVEYKATPVRNRPEVTEANRVQLALQRLCLEEMGYELAGTEVYFTGHRRRVEVELTAEDLVGAEALVGRTRELIAAEQAPAPLVEDRRCQWCSHASVCLPDEHRYEAVRRRVVAPAPDAQVVHLATPGSRASFRGGRLEVLKSGETLLSVPVERVLGLVVHGNADVSSALLRELCWRDRCVVWCSWSGRVVGWSRGADAPNGLQRVQQHVASSEGRLDIAQQMVSAKIANQATLLRRNGNAAEDVAVMRRLQREACEAHSLTELLGIEGEAAGAYFGSFATMLEGKAAGFAAERWRGRRRRPATDPANAALDYTYALLLGECVRGLVACGLDPHAGFLHSSSRNKPALALDLMEEFRAPVADSAVVRAFRNGELGEGDFLSVMRACRMTDRGRKQLIASFERRVETAFRHPVYGYDTTWRRCIEIQARMILGVIDGTQPAYKGVTVR
>LR134357.1|VEG56176.1|2311184_2312225_+|Uncharacterised-protein
MILTGTTSSALTTFGGLGLGLILEGAGASRVRVGWTDSLEPQLVVSAAGYDDDAVAAAVLQHAQSNAQADSWIQANLDSAPWGGQRAVFSPRIKKAEKTEQWMYLQKARHDGIDRLRALGGFGTELELIGALGEPAYWPVRMNEIKPDEGASRWEMKTRNRGEEFVGNRLRQLTAIVSKRSVEQVRDGLTGVSVVDEAYKGKRSDESRTSTGLTGPRFTDSALAWCALWGISCFPVLHQLGKASVTAAALPVGKYTPEYLVLPLLVGGHSLARWRSVLVSGQLHDCVGSSGVACAEAERWLLDHGVWALAVHPVMLGGSANAPERSLGECLEPKVLVVDGGQERWN
>LR134357.1|VEG56174.1|2308489_2311180_+|helicase-Cas3
MISVDEFADFFAAIHDGERPFAWQEELLHALVNDGCWPDQIAAPTGSGKSAVVEIHVFANALAACGQGARVPRRLAVVVNRRALTDAHADRAAQLQRLLKEAPDGGVVARVREALASLWVEGRNQSGPLMLAVMRGAAAIDRDWLDAPEACGVLCMTPAMWGSSLLFRSYGAWPFARPRLAGLLALDAAVVVDEAHLSRQLLVTARRVAELVGASAHKLGVPALQAVEMTATPTSNQGRVVAVTEQAVLKDSCLAARVGAPKSVLYVPTGTWPTNGKMTQKYLEVIVDQVATQVAEAQSWAATGPRTVGCVLNRVDSAIRVAQALRERGLRCRTWVGRMRPWDLKMMRREDPDLFTTVGSDQVDVLIATQTVEVGVDLDLAALVTELASGSAIAQRAGRVNRMARRQRGPVVVVGPELKAKLADDVLPYQAADLRSARAWVLERQAVGDLSPLAVVSAPPPAEEPRRILWQRPEPWDVNLWARTSQRLVIEPELDLWLRDDLDPEVDGVGVVLRELAQLPDSLACESLLRELEPQDEEVFPTNIGALRELVRRIAEVKSGPLERSVLWRDGAPFPSWQALVDQGEDKASRELRPGDLLVLDSGVPLLTENVVTSDGKEKGHAVPLAAFREFAGKGASLVSDVVGVVTDPEELKAFADLTEEEIAARLGGTIALPPGWQEGEAPAWVVVRDANTVSCEADQHSMLSARGRVGLEEHNAAVAQRALAFGRSLGVAEQVSGLLAEAGRWHDVGKADVRFQRALWRKDPEGCELLAKSGATNPKVIKRAWADSGLPGGWRHELASAAAYWDSCEAAGQPVEDRELVTRLVGTSHGRGRPMFDHSVEQAGPGPVEALAELIGEGEWESVVARTDRNWGPWGTAYLEGLLRAAGCTISAEGK
>LR134357.1|VEG56172.1|2306936_2308484_+|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MTSVGITARFPLGVYHGHAADGSADSFPTPLRLFSALVNSAYTGTTTGPDGALSAATLEALNWLENNPPRGLYLPPSSPVNPSQTSRVAYRKTGTIEKKQPKIAPKMISDGIALAGKFGWIWEEMPDSVREILARLCEDVPCLGEMDSPVVLEVSKAEPNWTWLPEATAFTPGGRRVPVPAVGRRAVLEALHQDSRPRKAPTESADRLGETSDAVRPFPVSIECTRVLHYAPRGLERPSMGSPWSDVLVFRTEAGAGVLPAEQRLDWCVGFHRALVSRIGDGTPSVITGRYPTDRSVPANRVAIQYLPESLLSLSNIKLDHPAPGVFLVMIPSDISTDDLNVLIAALAGMTYVTSRWGRLRLRRHDELVLTSEFWHAPAAGAVRLWSPTPVAVPEVTRQKGPWTFEDAILLSLGFVWRDRLEPVGKGTQGYRSLVKQVRERGAGVSWYRRTVKSPSSYAHRMPEGMVAQPYTAVLSSGELTGNQELVAIGQSRHLGGGLLAPVDLPAELAESLKR
>LR134357.1|VEG56170.1|2305734_2306937_+|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system
MSAVHVITLKHLQAACSPGGASVLTSVTKLEPAAGPHASVAPAKFSARGNSVFAYERRFYDGAPVNVVLIDSKQSQNNRGEAAIATAIADGDPILSRIPRIELVFPDGASFTDLDLPHRAFDGQIRAGAINGKSVTAAPEYRSLRDATVTHARPLLERSPMTLLLGGWDASRKSHQGRYRSILVGEIIGILADQEGAAEVNQSKRGGARIDPLGMHIDLPDKQRKAIADAQKAELSRKTYDGAVGPKGKPSNLGLGGIPPMLEQLGGVSCREIIRSHVLSFAALRALRFDSVTPQGDVACRMVLAALALNALARSDAELLLRANCDLVEAGPAVVTLDKRYGEKEEFSPLTIEQAQELLSEAIAYAEKEAGLVWDGSVLRVDGNPDVQEAAGDADRDEDA
>LR134357.1|VEG56168.1|2303815_2305276_-|Divergent-AAA-domain
MITTTNELQEALARLSLEGGDCLDLEVKTFSEYSAKSLGPTLCAFGNLPGGGSVLLGVNERGDAPVVGLDNAHDTAERATNQARSGLSVPLTVDVRVLTLDSREVAALNVSEAPVNQKPCTWNGKAYIRQYDGDYTMSLQEQQQLLRRHNRPRDDREPVPGTSRADLDDQAVKDFAISVRQTTPALRACTDAEILLRLNAITDSGEATVAGLYALGTYPQQHLPHLSLTAAIVSKQAEAKGERGRNRKDFTGALPQILDGAVEWVSQNIGSTLVVSRDGRSQTTFAIPLVAVREVVANALVHRDLSEATAGRAVELRLTDSGLVLTSPGGLWGLSVDQLGTPDGKSAVNEFLYTICRHVGGAGDRVIEAMGTGIRATRQALAEAGLEPPRFTDNGVRFTVRFPNHALHTYKDLAWLGSLDLAGLSAGQKEALLRMRSGAELSNSDYRQFAQVDSTTARAELGELVRRGLAERIGKHRGTRYRFPTA
>LR134357.1|VEG56166.1|2301490_2303644_+|Ribonucleoside-diphosphate-reductase-subunit-alpha-2
MADTLTDTGSETVPPELDYHALNAKLNLYDANGKIQFQADHDAARQYFLQHVNKNTVFFHDLEEKLEYLVEEGYYEQRVLDLYSPEFIKSAFKSAYAHKFRFETFLGAFKYYTSYTLKTFDGQRYLERFEDRVTMVALALGDGDEALAMDLIEEIMTGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALLLTNLREMGAPIKRIQNQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERFYGVPFADISVTEKYREMVDNPAIKKKKINAREFFQTLAELQFESGYPYIMFEDTVNRANPIKGKVIMSNLCSEILQVSEASELNEDLTYKHIGKDISCNLGSLNIAKTMDSPDFARTIRTAVRGLTAVSDQTSLPSAPSIDRGNRESHAIGLGQMNLHGYLARERVFYGSEEALDFTNVYFASVLFQALTASNELAVERGESFVGFEDSKYATGEFFEKYMTQDFVPVTARVKELFAKSSVHVPTRADWAELAEKIKKTGLYNRNLQAVPPTGSISYINNSTSSIHPIVSKVEIRKEGKIGRVYYPAAYMTNDNLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDVNKAQIYAWRKGIKTIYYIRLRQAALEGTEVQGCVSCML
>LR134357.1|VEG56188.1|2316581_2316881_+|Uncharacterised-protein
MCQAVRGLASVILEQLGVPGYFERVSTKASSVYNTAYLGGIERVFAYAEAQEGSQLEPKAIDLLRSIDQCAAGTSTEIKGQGRQRSASAPQVRLSGESL
>LR134357.1|VEG56190.1|2316901_2317573_+|Uncharacterised-protein
MDKEQLASLVYMRPELPEDAEVPALAPEASLEEPDAEPDTPDPDDTAEADEDLEDPDEPKEDNEGFEWSARDKRWFAVAIIYAFICLPGMMFLGVQCAKALQRGWGEYQIEDYFDDSAIIEDASLTSGGDFLHGYYLQIEARLAPGVSDQDVCELLVGADKRFGKAKLRSIGKNELRVRLTGDIPSHKGELFTYVPFTGSWDGFTRKDGGGVCTRELHSVLGG
>LR134357.1|VEG56192.1|2317794_2318769_+|Ribonucleoside-diphosphate-reductase-subunit-beta-nrdF2
MPEPLKLIDRVQAINWNRLVDDKDLEVWDRLTGNFWLPEKVPLSNDVPSWATLNEAEKNMTTRVFTGLTLLDTIQGTVGAISLIPDARTPHEEAVYTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENEHLQRKAKIILSYYRGDDPEKRKVASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVQEASATRQQELKDYTFDLLMELYDNEEQYTEDLYDELGLTEDVKKFLRYNANKALMNLGYEALFPAESVDVNPAILASLSPNADENHDFFSGSGSSYVIGTAEATEDEDWDF
>LR134357.1|VEG56194.1|2318768_2320199_+|Uncharacterised-protein
MPGAQPQMHELPPTTEQEIVPRPRPTSPPVYHSGATKIGELGTRTWRLDDVVDAVFFVVSALLTLWLAWIFLSAGLYLRPRAVACALLFWAVLAYLALPRMHQVLTWLYVPDYFIGRTRTADGLLGDPVNLAVWGSEEAIHESMRAAGWVRADPITLRSSWGIIASSLMRRSYPAAPVSTLTLFGRKQNFAYQKEVEGNPAQRHHIRFWHAPEGWVLPGGKRVDWLAAATYDRAVGLSTLTFQVTHKIDANIDIERNFVVDEVLWANPEAKLYSWADFFTSYHDKNGGGDRVFTDGDLYVLDLSEVVTGKGAAELASSQEADAEADRRRPLALVAALVLMTLRVLLDTGDLVRKALYDRAALAQVELDPQELSQIDPAQAVRLVLAIIVVTVTLLTAILAVAVWRGHPRSRIALMAVLTLGVLADMSEISASGAGQAPVNVLLSCALGVLALLTISTRSCHRWVRERKEERSQLPA
>LR134357.1|VEG56196.1|2320242_2321028_+|Uncharacterised-protein
MSEQPEVPGGDTVRMGLPFNGVVPLWYEGENITWHHSLQADLSTLLGLGHIQTTRGPSPTPPGWSEQVEIGTLRYDDDGAPTLFLQAAAPTGRRAVNQAGDGAPIPLSGPLSPQEYMQSQVDDVAMAVHVGRLMIRAARDSAILLFTLRAPRDPEAHHLLSMPAEVDDDLVMHFHLGTLLEMEGGAWDQATRQDGMSLLDLDVPFEPLLVAGSNEGEPGLDAGGLVDMARPVVDCLLKPGFPFALGYSFILPEDATPTPAQ
>LR134357.1|VEG56198.1|2321168_2321948_+|Probable-nitrite-transporter
MLTLTENLQAQAKSAVARTDGASRLLPFLVSSMLAGAFVGIGGTFMLMAAGPFKAASSPATALISGPPFCVGLLLCIYGGAELGTSAMMTFAIGSFRKAITWLKAGRVLLLMLLGNLAGSMLLAALLWGTNILNSGNAAGAMLAAVVTTKGNLPLTVIFFRGIMCNILVCLTIWCVTRLSSEVAKAVAVFAIISAFVTCGFEHVVANMTFFSLGLFYGVDGASVTLALRNLLVSGIGNLVGGAIFVGAAYLLAARTEQH
>LR134357.1|VEG56200.1|2322047_2323688_-|Bacterial-protein-of-uncharacterised-function-(DUF885)
MARLAELSPEFAVYNGLPGRRGALDDHSPAGLAALTELSRATLRSLDQLQPADDVDRVTLAAMRERLGLELELAEAGENLRVLNNIASPAQSVRDLFDNLPTDTVGDWETFASCLRAVPGALKGYLSALGEAASRGDVAARRQVAAVIAQARDQAEASTSSYSVLTAQPTTGDGTTLPASLTEELREAAAAARAGYATFAEQLERELLPQAPTEDAVGRERYQRFSREFLGATVDLDETYEWGRERLAAIDAEQRQIAAELYGPGTTVRQALERLNADPSRLVHGTQALQEWMQATSDAAIAALDGTHFDIPSPLRTLECRIAPSQTGGIYYTGPSDDFSRPGRMWWSVPAGTADFATWQERTTVFHEGVPGHHLQCGMQTFLREELNSWRRLACWVSGHGEGWALYAERLMADLGFQADPGDRFGMLDSQRLRAARVVLDIGVHLGKERPAELAGLPGVGEGRWDAESAWAFLRHNVAMSEGFLRFELDRYLGWPGQAPSYAIGQRLWEQTRDAALAGGSSLKEFHMRALRLGSVGLEVLRQALA
>LR134357.1|VEG56202.1|2323688_2324567_+|Probable-low-molecular-weight-protein-tyrosine-phosphatase
MRLSYGVDGGGLAADWCGGSSHALRLGHAQAPGLRVLQGLLARGQGVRCGGLDLWAGARRETLCGVNAPVAPAEPPSLPNPRHPGQPYRIVMVCTGNICRSAMAEMVLTDRLLAAGVPLSGPKGVVVTSAGVSAEETGNPMDSRALRLLAERGYGQGADQPARLLAQRLSHHRAHRISDAELRQADLLLAMTASHQRELRRRCESLGLDPERVRMFRHYEPSEPQQAASPEATAARGLDAARGLGAGGGLDVPDPWYGTMADFVDTLQVVERVSEALCPRLEQLGAEPPKPS
>LR134357.1|VEG56204.1|2324592_2325810_-|Alpha/beta-hydrolase-family
MTQTDQSTPTTPPAPELTPDILGEPWVARRINVTVDQEAAPGADHAVLVYQRGATTAPRSAPRHTRAVLYLHGRNDYFFQTWLAEAFLDAGYEFYALDLRACGRAGAQHPSPHDVRDLRVHDEEIAESLRIIKEEHGHHTVILNGHSTGGLQAVIWAADHPGSVRALALNSPWLQLNSSSLVRSYGSAYVDLLSRRDPNRIIGNPSETKAHKAARLAAQAALEARATQAETADPAPADSAPADSSATEATKTPQATASDAVAALTAADPGAVEDDLYVRVLHQRWGGEWDWDLNLKASPSFPVRAGFMAGIRRLHREIKHGLDLKVPVLVCCSTTTGQPDATPEEALRSDMVLSVEQMVERSACLGRDVTIRQIPGGVHDLVLSPSPVREDYLNTMMGWLAVRLG
>LR134357.1|VEG56206.1|2325995_2327993_-|Lipase-precursor
MAHSGDTTANLLEDQQGRPSQISQLPEDTNVVMFTVGGNDVKFAEIVSQCFALGIRDPKSCRNNVEAAQKGLSVVRDKTEQILNKIDARLPDGAQVILVGYPRLATDRKYILNEWGQSYDAGTNVRALSDQSRQVQSDLVRQWNASHPGLKVTYIDGVVNAFDGHEPDPSAFSRNPHRWINEFLETNGRQGPDGTTISESSYEQMHWYHPNLIGHAQIAELIKNQVGVPSPGNTDLGVTKGDIDIAFVIDSTGSMRDDVDAVRSRVHDIVTRVQKSASSYRFALVDYKDHPKYDSENYLAKTRLDFTSDGKALEDTLGTLTYEGGNIGNVAASSHSGVMQALGLKWRDGVRKIVIVIGDAPPRDPETETGYTSASVAKAAWEVDPAVVYGIDTGGLSSAAFKDLVDRSGGTIAESASPDNVATLINQAIESELSKPFAWIQGPYVIKVGDSLTLDARGSYATSGTITSYEWDFDGDGTYDQTTTEAKVTHTFPSEMKGYLALRVTQTDGQTNVATTPIMVTDDEDSTPAASDNCPTVYNYSQSDYDQDGIGDECDPEPGYPQADKPGVTETTDNQPAPVAPTSPSPSATATPSDSTQAPSPTATSSPSGVVPQPAPTAGPANHSGSNKALSNTGVSTAGGLGAVAALLLAGFGIRQATLRRRRLS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
LR134357_5	5.1\|2314336\|33\|LR134357\|PILER-CR,CRISPRCasFinder,CRT	2314336-2314368	33	LR134357.1	1843473-1843505	1.0
LR134357_5	5.2\|2314405\|37\|LR134357\|PILER-CR,CRISPRCasFinder,CRT	2314405-2314441	37	LR134357.1	1702496-1702532	1.0
LR134357_6	6.1\|2316358\|35\|LR134357\|CRISPRCasFinder	2316358-2316392	35	LR134357.1	1817426-1817460	1.0

1. spacer 5.1|2314336|33|LR134357|PILER-CR,CRISPRCasFinder,CRT matches to position: 1843473-1843505, mismatch: 0, identity: 1.0

cagaccggccagcaatgctggcgtcgacggcaa	CRISPR spacer
cagaccggccagcaatgctggcgtcgacggcaa	Protospacer
*********************************

2. spacer 5.2|2314405|37|LR134357|PILER-CR,CRISPRCasFinder,CRT matches to position: 1702496-1702532, mismatch: 0, identity: 1.0

ctcggcacggccgccgctgttaccgccctgttgtggg	CRISPR spacer
ctcggcacggccgccgctgttaccgccctgttgtggg	Protospacer
*************************************

3. spacer 6.1|2316358|35|LR134357|CRISPRCasFinder matches to position: 1817426-1817460, mismatch: 0, identity: 1.0

ctggttttggctgcttcgaaggtctggcagatcag	CRISPR spacer
ctggttttggctgcttcgaaggtctggcagatcag	Protospacer
***********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134357_5	5.7\|2314764\|39\|LR134357\|PILER-CR,CRISPRCasFinder,CRT	2314764-2314802	39	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	470022-470060	10	0.744

1. spacer 5.7|2314764|39|LR134357|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 10, identity: 0.744

gagcgcaagcaccaccagccccacgatcacggacgccga	CRISPR spacer
cgccagcagcaccaccagccccgcgatcacggccgcccg	Protospacer
 . *.  ***************.********* **** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

525151 : 538459

Arthrobacter_phage(75.0%)

portal,terminase,protease,tail,capsid,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG53139.1\|525151_525856_-	Voltage-gated potassium channel	A0A1B0Y2S3	Lactobacillus_phage	4.3e-08	44.4
VEG53140.1\|526337_526676_+	Transposase and inactivated derivatives	NA	NA	NA	NA
VEG53141.1\|526641_527241_+\|terminase	Phage terminase, small subunit	NA	NA	NA	NA
VEG53142.1\|527227_528829_+\|terminase	Phage terminase-like protein, large subunit	A0A222ZEP5	Arthrobacter_phage	2.9e-124	45.8
VEG53144.1\|528842_529067_+	Uncharacterised protein	A0A0U4JXJ2	Arthrobacter_phage	4.6e-12	53.1
VEG53145.1\|529063_531016_+\|portal	phage portal protein, HK97 family	A0A0U4K705	Arthrobacter_phage	2.5e-186	54.2
VEG53146.1\|531029_531791_+\|head,protease	phage prohead protease, HK97 family	A0A1D8ETC5	Propionibacterium_phage	1.5e-62	53.5
VEG53148.1\|531808_533089_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A222ZEN6	Arthrobacter_phage	6.5e-127	57.2
VEG53150.1\|533168_533342_+	Uncharacterised protein	NA	NA	NA	NA
VEG53152.1\|533354_533945_+	Uncharacterised protein	A0A222ZFS8	Arthrobacter_phage	1.4e-31	42.7
VEG53154.1\|533947_534289_+	Uncharacterised protein	NA	NA	NA	NA
VEG53158.1\|534291_534558_+	Uncharacterised protein	A0A222ZG63	Arthrobacter_phage	1.4e-07	47.0
VEG53160.1\|534564_534969_+	Uncharacterised protein	NA	NA	NA	NA
VEG53162.1\|534980_535556_+	Uncharacterised protein	A0A222ZEQ0	Arthrobacter_phage	3.6e-53	56.0
VEG53164.1\|535558_535915_+	Uncharacterised protein	A0A222ZER2	Arthrobacter_phage	5.7e-17	45.0
VEG53165.1\|535857_536280_+	Uncharacterised protein	A0A222ZFN5	Arthrobacter_phage	1.7e-23	46.3
VEG53166.1\|536290_538459_+\|tail	Phage-related minor tail protein	A0A0E3XB61	Gordonia_phage	1.5e-70	42.0

DBSCAN-SWA_2

1383674 : 1393713

Catovirus(33.33%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG54612.1\|1383674_1386461_+\|tRNA	Valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	3.7e-151	36.1
VEG54614.1\|1386719_1388564_+	Long-chain-fatty-acid--CoA ligase FadD15	A0A1V0SBX8	Catovirus	4.9e-43	23.8
VEG54616.1\|1388678_1390607_+	Long-chain-fatty-acid--CoA ligase FadD15	A0A1V0SBX8	Catovirus	1.5e-42	25.1
VEG54618.1\|1390609_1390987_-	T-protein	NA	NA	NA	NA
VEG54620.1\|1390983_1392273_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	9.7e-123	55.4
VEG54622.1\|1392392_1393088_-\|protease	ATP-dependent Clp protease proteolytic subunit 1	A0A248SJ97	Salicola_phage	1.0e-25	38.9
VEG54624.1\|1393089_1393713_-\|protease	ATP-dependent Clp protease proteolytic subunit 1	A0A223W000	Agrobacterium_phage	3.2e-47	53.9

DBSCAN-SWA_3

1459649 : 1506705

Staphylococcus_phage(33.33%)

tRNA,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG54751.1\|1459649_1463303_+\|protease	M6 family metalloprotease domain	NA	NA	NA	NA
VEG54753.1\|1463469_1466853_-	Uncharacterised protein family (UPF0182)	NA	NA	NA	NA
VEG54755.1\|1466960_1467563_+	Uncharacterised protein	NA	NA	NA	NA
VEG54757.1\|1467618_1469028_-	Uncharacterized conserved protein	NA	NA	NA	NA
VEG54759.1\|1469196_1470426_+\|protease	ATP-dependent protease Lon	NA	NA	NA	NA
VEG54761.1\|1470551_1471592_+\|bacteriocin	bacteriocin biosynthesis cyclodehydratase domain	NA	NA	NA	NA
VEG54763.1\|1471680_1473750_-	ATP-dependent DNA helicase pcrA	A0A068EQC7	Bacillus_phage	7.9e-42	26.7
VEG54765.1\|1473854_1475234_-	NADH pyrophosphatase	NA	NA	NA	NA
VEG54767.1\|1475354_1476638_+	Cysteine desulfurase	A0A0H3TPH2	Faustovirus	2.2e-18	27.2
VEG54769.1\|1476746_1477910_+\|tRNA	tRNA-specific 2-thiouridylase mnmA	NA	NA	NA	NA
VEG54771.1\|1477958_1478780_-	Uncharacterised protein	NA	NA	NA	NA
VEG54773.1\|1478779_1479592_-	ABC-type transporter ATP-binding protein EcsA	A0A2H4PQG7	Staphylococcus_phage	2.3e-13	25.3
VEG54775.1\|1479588_1479975_-	Uncharacterized HTH-type transcriptional regulator ydcR	NA	NA	NA	NA
VEG54777.1\|1480330_1480609_+	Domain of Uncharacterised Function (DUF1540)	NA	NA	NA	NA
VEG54779.1\|1480713_1481598_-	Uncharacterised protein	NA	NA	NA	NA
VEG54781.1\|1481733_1482705_-	Electron transfer flavoprotein large subunit	NA	NA	NA	NA
VEG54783.1\|1482755_1483514_-	Electron transfer flavoprotein small subunit	NA	NA	NA	NA
VEG54785.1\|1483632_1485930_+	Glycogen debranching enzyme	NA	NA	NA	NA
VEG54787.1\|1486063_1487197_+\|tRNA	Tryptophan--tRNA ligase 2	NA	NA	NA	NA
VEG54789.1\|1487589_1490067_+	Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1	NA	NA	NA	NA
VEG54791.1\|1490063_1491593_+	Maltokinase	NA	NA	NA	NA
VEG54793.1\|1491688_1493902_+	1,4-alpha-glucan branching enzyme GlgB	NA	NA	NA	NA
VEG54795.1\|1493750_1494422_-	Uncharacterised protein	NA	NA	NA	NA
VEG54797.1\|1494901_1495117_+	Uncharacterised protein	NA	NA	NA	NA
VEG54799.1\|1495124_1497086_+	Uncharacterised protein	NA	NA	NA	NA
VEG54801.1\|1497082_1497700_+	Uncharacterised protein	NA	NA	NA	NA
VEG54803.1\|1497713_1498226_+	Uncharacterised protein	NA	NA	NA	NA
VEG54805.1\|1498222_1498774_-	Transposase and inactivated derivatives	A0A2H4PDF8	Mycobacterium_phage	4.2e-43	52.5
VEG54807.1\|1498816_1499137_-	Transposase and inactivated derivatives	A0A2H4PDF8	Mycobacterium_phage	1.3e-20	41.5
VEG54809.1\|1499137_1499536_-	Transposase and inactivated derivatives	NA	NA	NA	NA
VEG54811.1\|1500117_1500861_-	bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA
VEG54813.1\|1500860_1501556_-\|protease	CAAX amino terminal protease self- immunity	NA	NA	NA	NA
VEG54815.1\|1501545_1502340_-	ABC-type transport system involved in multi-copper enzyme maturation, permease component	NA	NA	NA	NA
VEG54817.1\|1502336_1503263_-	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA	A0A2H4PQG7	Staphylococcus_phage	4.2e-19	32.8
VEG54819.1\|1503259_1504114_-	SagB-type dehydrogenase domain	NA	NA	NA	NA
VEG54821.1\|1504126_1505506_-\|bacteriocin	bacteriocin biosynthesis docking scaffold, SagD family	NA	NA	NA	NA
VEG54823.1\|1505502_1506705_-\|bacteriocin	bacteriocin biosynthesis cyclodehydratase domain	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134357

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection