CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134360	Staphylococcus condimenti strain NCTC13827 genome assembly, chromosome: 1	2 crisprs	csa3,WYL,cas14j,DEDDh,cas3,DinG	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134360_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134360_1

2580418-2580496

Orphan

Consensus_repeat	Method
TTTTTAGAGGTTTTCTAGAGGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134360_1

>merge|LR134360|1|2580418-2580496|CRISPRCasFinder
TTTTTAGAGGTTTTCTAGAGGTTTTTAATTATTCATCAAACTATATCCTTAATTTCGCGAGAGGTTTTCTAGAGGTTTT

>LR134360|1|1|2580418-2580496|CRISPRCasFinder
TTTTTAGAGGTTTTCTAGAGGTTTT	TAATTATTCATCAAACTATATCCTTAATT
TCGCGAGAGGTTTTCTAGAGGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
LR134360.1\|VEG65406.1\|2579960_2580365_+\|mutT/nudix-family-protein	unknown	unknown	gnl\|CDD\|240032
LR134360.1\|VEG65400.1\|2572813_2574712_-\|putative-glycosyl-transferase	unknown	unknown	gnl\|CDD\|366154
LR134360.1\|VEG65404.1\|2577319_2578282_-\|radical-SAM-domain-containing-protein	unknown	unknown	gnl\|CDD\|188593
LR134360.1\|VEG65402.1\|2575920_2576556_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
LR134360.1\|VEG65409.1\|2583109_2583388_-\|pathogenicity-island-protein	unknown	unknown	unknown
LR134360.1\|VEG65411.1\|2583683_2584307_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
LR134360.1\|VEG65403.1\|2576571_2577258_-\|Zn-dependent-proteases	unknown	unknown	unknown
LR134360.1\|VEG65412.1\|2584399_2584789_+\|Integrase	unknown	unknown	gnl\|CDD\|379665
LR134360.1\|VEG65401.1\|2575182_2575905_-\|membrane-protein	unknown	unknown	unknown
LR134360.1\|VEG65416.1\|2589945_2590524_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
LR134360.1\|VEG65408.1\|2582113_2582815_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225420
LR134360.1\|VEG65407.1\|2581314_2582148_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225420
LR134360.1\|VEG65397.1\|2569614_2570340_-\|putative-phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|129526
LR134360.1\|VEG65410.1\|2583441_2583540_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134360.1\|VEG65405.1\|2579203_2579800_-\|Staphylococcal-complement-inhibitor-SCIN-like-protein	unknown	unknown	unknown
LR134360.1\|VEG65415.1\|2588675_2589944_-\|putative-xanthine-permease	unknown	unknown	gnl\|CDD\|274468
LR134360.1\|VEG65414.1\|2587175_2588642_-\|putative-inositol-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
LR134360.1\|VEG65399.1\|2571642_2572635_-\|putative-leukocidin-S-subunit	unknown	unknown	gnl\|CDD\|369625
LR134360.1\|VEG65413.1\|2585617_2587159_-\|GMP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|234614
LR134360.1\|VEG65398.1\|2570642_2571641_-\|Leukotoxin-LukD	unknown	unknown	gnl\|CDD\|273388

Protein	Function_ID	Function_description	E-value
LR134360.1\|VEG65406.1\|2579960_2580365_+\|mutT/nudix-family-protein	gnl\|CDD\|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.66716e-22
LR134360.1\|VEG65400.1\|2572813_2574712_-\|putative-glycosyl-transferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	2.92039e-23
LR134360.1\|VEG65404.1\|2577319_2578282_-\|radical-SAM-domain-containing-protein	gnl\|CDD\|188593	TIGR04078, radical_SAM_domain_protein_protein, peptide modification radical SAM enzyme, YydG family. Members of this radical SAM protein family for peptide modification occur only in the context of members of family TIGR04077, which average about 50 amino acids in length. In Bacillus subtilis, this protein (YydG) appears to act on its cognate target peptide (YydF) prior to its export, and result in the creation of a signaling molecule that induces the LiaRS two-component system. [Regulatory functions, Protein interactions].	1.3343e-142
LR134360.1\|VEG65402.1\|2575920_2576556_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.46724e-18
LR134360.1\|VEG65414.1\|2587175_2588642_-\|putative-inositol-monophosphate-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
LR134360.1\|VEG65411.1\|2583683_2584307_+\|transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.42494e-15
LR134360.1\|VEG65416.1\|2589945_2590524_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	6.77236e-115
LR134360.1\|VEG65408.1\|2582113_2582815_-\|putative-transcriptional-regulator	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.34964e-16
LR134360.1\|VEG65407.1\|2581314_2582148_-\|putative-transcriptional-regulator	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	3.30768e-14
LR134360.1\|VEG65397.1\|2569614_2570340_-\|putative-phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|129526	TIGR00434, Phosphoadenosine_phosphosulfate_reductase, phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS. [Central intermediary metabolism, Sulfur metabolism].	6.44321e-110
LR134360.1\|VEG65398.1\|2570642_2571641_-\|Leukotoxin-LukD	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	1.17452e-85
LR134360.1\|VEG65415.1\|2588675_2589944_-\|putative-xanthine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.12922e-168
LR134360.1\|VEG65399.1\|2571642_2572635_-\|putative-leukocidin-S-subunit	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	4.49347e-59
LR134360.1\|VEG65413.1\|2585617_2587159_-\|GMP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
LR134360.1\|VEG65412.1\|2584399_2584789_+\|Integrase	gnl\|CDD\|379665	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain. This domain is found in a variety of phage integrase proteins.	8.00939e-13

>LR134360.1|VEG65406.1|2579960_2580365_+|mutT/nudix-family-protein
MPPKHIVSASCVVLNDENNILLIKSPLRGWEIPGGQIENGETIREGVIREVKEESGIDVELTEFCGVFQNTEHSIINNLFKGEYIGGKLTTSDESLEVGFFIYTEVMEKVTWGNFTERIHLCFSEKEKPFLISF
>LR134360.1|VEG65405.1|2579203_2579800_-|Staphylococcal-complement-inhibitor-SCIN-like-protein
MNFKQFLLSGLAVALLGSAGANVFSNQAEAASYGAYEFRDYDVTAKENLKNLLNASSYYKAMAKESGARFYQNKLNQELHFAKKQQNASNDSQVVTAINRLSAVYNEVFQIHLQTEKGSSDVQSKKTELQNLIIKANSLLTESHHSMNQDEAQLKKTVEQAKTVLNQAQPGYELVNAISSVQQGIKNVEQYKAFVNHR
>LR134360.1|VEG65404.1|2577319_2578282_-|radical-SAM-domain-containing-protein
MYNKSVSINLVSKCNAACAHCCFSCSPQASIKMDDSYIKETVLEFSKNPNIEVISFTGGEIFLNYKFLEELLIITKSYNKKVTLISNGFWGSSRKLLKKYFSDFKKYNVIALTISYDEYHAPFVKLESIKNIFKFRMKYPEIDVSLNMAVTKDKMSNTILSELGSSVIGVKITKFPIITVGAAKDKISKNNIHNFYNIEKDRDVLYCPGYEIVYHHDGEIYPCCSPAIFETQISLREEKYQTLERTIEKLNSNILLYIIRREGFNWFLDILKEQKLLNDFGIPLDFPSVCSVCGSLFNDQYKINFFKPYMEKYYYETIKI
>LR134360.1|VEG65403.1|2576571_2577258_-|Zn-dependent-proteases
MYYRNSVGAIEPNIINMLTDYPEKVNKCSFYTYIFFLVVMVFINNIYVLNLQENIEPKINNSILLFVILYFLMNIIFHELGHIYSLKFFGRKIDKVGFKLNFYVFPAFYVQMNETYMLSQIDKIIVHSFGLFVNFALINFIQLLNILIINNISLTLSYMLFSSTMIWNLVPMLNSDGYKIMLALLSLDEFSNFTKNHWLVLIFQIIGVSIALNTLIHWVIYWSEYLFL
>LR134360.1|VEG65402.1|2575920_2576556_-|ABC-transporter-ATP-binding-protein
MKINNYSLKVKGKKLVENCDLNFYPGQINHIVGKNGVGKSQLAKDFMLNNSRNIPKSISDNTTLISSFSNIPNDITKEFLLVLLKAKFPNSSPTFSEINKILKIEEIPSKVLIKNMSDGQKQKLKLLSFLLEDNSLIILDEITNALDKKTVNEIYLFINDFIKNNPSKTIVNITHNLSDLSSIPGKYFIFKDYRIEEYLSKEEVINDYINL
>LR134360.1|VEG65401.1|2575182_2575905_-|membrane-protein
MKLEFRKSIANKIVLTLGPLFIFLFLLGYFLPVGIDKVKSLSYGQYFFSAYTVLTEFGFLLFSFIISYFINKEYSNKNTLFYKLIGENIFSFFYKKVAILFLECLIFIFLGITVVSLIFSNFSHFILLIILFSLVVLQYILIVGTISILSPNVLISIGFSIIYWIVSIILVAVNKKIFGILAPFEASNSMYLSVEKILKNKEGLINLNDITIIIIFFMLIFIVNFIILALSKKRWLKLGM
>LR134360.1|VEG65400.1|2572813_2574712_-|putative-glycosyl-transferase
MTKDLAIIVPVYNKELFLDDTMKSIDNLDIDKSEIEVIFIDDVSTDQSLEKLKVYENEYDYVKVVELEENTGSPSTPRNVGVEVSDSKYITFLDADDWLDAEGFPKLLQQALDTQNDILFGQSLRHKDHSISKIARFSSYETAYYLVPYEIDKIFRAVGPPGKIIRASVIKENDIQFEHMKYGEDKLFFTEVIAKAQSAGMNDAVAYHVNRYGVNQSLISETDIFEKTSCNLEVLKKLFELDIPETARHNAISRIIEMDYLSRLFMNKRFLKSEDKQLFYDAFAEMETILDRHHLNIKDYLTEDKYEKVYQLLSQSDKEKAVKLIEILVKGERAPRYVSNGLVHFVLPETLQEIAPLTEEFFAVYSGTEEADGQFYEVIQLYKKMAAQISRVQLVKLGDESVTKDVGYQVRGGRLRVPTKELEEADFNFNIQITYDYYRPCTVNMNLPSAIKHHALKRQQFKAEFEDKRFKNETNQPKFVDTTKYYDENPGKVFAAKQFKVYEDVEFQKEAPREIEVGELFTVEDIQYTEKGTPRLTLKDGSVVTANKKFVSVLDEAKGKDYLIEPPRKVQVLKVCKAYNDRNFKDEAGAKFAKDDIENITKIVFSSNGTPRLKTDKGIYMTANRNFVEPIQ
>LR134360.1|VEG65399.1|2571642_2572635_-|putative-leukocidin-S-subunit
MKWKEMLVTLIPASVLILGTIMPSEVIARDIKQDEIGKDGQVTKRTQVGSDINGGFTQILNFDFIDDPKYDKDALVLSTKGNIASQLEYGKFRENPLFFSQMRFPGEFGVRIHVKDNPKTEILDYLPKNNIESVDVSETFGYNIGGSISSNESGSITGGVNYSKTINYKQNNYRTLLSSDTSNQSVGWNVIASSLFYNGHTNVRGDLNLFRNDAGDRIEHDPRTFLAGKSTLPSLVRSGFTPDFLTYLSNDKQNTKTQITVRYQRLNDEIDAAFYSSNFAIVPQMGRYYMNISGNAFTATYEIDWKNKKVKMLKQESEQIGKSPLEKAGE
>LR134360.1|VEG65398.1|2570642_2571641_-|Leukotoxin-LukD
MRSGILKIITLSTLLALTTGTAASLTDQAKANSNFITEVKNNGTEKVASDSMIYKRTATASDLNKHITQSLQFNFIKDESYDKETVVLKTAGNIASNARILDPYAVYTSTKRWPGEYKVSVNLPETDSTAIIDYAPRNHDETREVSDTVGFNIGGGLNIKKGGDANINAKYNFSETIKYKQDAYRTFLETPTTGKDITWGVVEAYNINVRGYGPYNREKENDKLGLYGNELFLNGRKSSKNAGKNFVDQNQLPALIASSFNPEFLTVFSHDYDDKGKSIIKVKYERVMDDYLITWKTFYWKGFNNKNVAKESITVAYEIDWDNHNVKVIGAV
>LR134360.1|VEG65397.1|2569614_2570340_-|putative-phosphoadenosine-phosphosulfate-reductase
MDSKITYTNFASNPFDSLNIFDETKGAYHVLKWAYDTYGDEIVYACSFGAEGIVLIDLISQVKPDARIVFLDTGLHFEETYDLIDRVKAKYPELNIELKKPDLTVDEQAEHYGDNLWRRDPNQCCYIRKVKPLEEVLTGQIAWVSGLRREQSPTRANTDFLNKDERFQSVKVCPLIHWTWDNVWDYIKSNELPYNTLHDQNYPSIGCAPCTSPVAAGGDSREGRWSNNMKTECGLHVGRKS
>LR134360.1|VEG65407.1|2581314_2582148_-|putative-transcriptional-regulator
MFFPNFHLDYRNRTHYSEDERWIDRVASGEVGNEEVNLFNFYNTVLNRLVNTVLDGFALNPETQVRQGVKTDVEVSLREALANLLIHADYEDNSSIIVEAYKNNYVFINPGELLVTKEEFARGGESNPRNSTIVTLFRKAGYSERAGSGGMKIFRAALKNKFRMPEIHSSEGKTKLKIWKIDLVDSYENLIEQEKTILRYIVKENRKIKMKEIEALEGFTEYIAKTNVNSLIDKGIVKKFGKSRSTTYGLKPNSSEMIANIEHNMRNMQESIINENR
>LR134360.1|VEG65408.1|2582113_2582815_-|putative-transcriptional-regulator
MEQEFLNEGTTIEYKKAQDGVPKSFWETYSSFSNTEGGTIYLGVSEEKQGCVVTGVKNANQYIQTIVDTANDKKFTNFNNIYNSNIKVLKEDGLEYIKIYIPEVKSENKPLHVKNNINNSYIRRNDSDHKMSGEEIRRFLRDADPKSDSELLSNFNIDDLDLDAVKKYKNLIHERNSDMDILSMDNWEFLKRYGAVGKDRIENEFKLKKGALLFFGKEQAILDVFSKFPFRLS
>LR134360.1|VEG65409.1|2583109_2583388_-|pathogenicity-island-protein
MIMDIQLIVAIKNMNVVTIITTEDEKLQAMRSVKNLGDGRMKRYEVLNKLNYKKKGGVYEYDDNNQDTWSVFFDDRKYRKLLGDLDNLLNET
>LR134360.1|VEG65410.1|2583441_2583540_-|Uncharacterised-protein
MSSIDEKLSSKLREKKARENITLQQVSKEIGI
>LR134360.1|VEG65411.1|2583683_2584307_+|transcriptional-regulator
MENRIAELRKEKNMTLKQLAEELNIRDNTLSQYETGKRNPQSGLLQEIANFFGVSMEYILKATDKRDYPIVDNSSAIELLEKIANEKEFNYSHISKNTALNLSLWIINNMDYIKEQHPNLLYTASFLVKSTISENKILQHYSEMRKKQFKIVDEIDDILLEREFYGASVEQVLEFLHQSERIGYEHTKKLMEYIRQLPTDEYEDEDF
>LR134360.1|VEG65412.1|2584399_2584789_+|Integrase
MIKKYKKKDSSIAYMFVAYSGTDPVTGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLNNDITTFKEVYELWLAQHQNTVRESTYQRVLTLFDTAILEHFKNVPIKKITIPYCQKVINKWNKKYSDI
>LR134360.1|VEG65413.1|2585617_2587159_-|GMP-synthase-(glutamine-hydrolyzing)
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSYTIDPEIYNLGVPVLGICYGMQLTTKLLGGKVERANEREYGKAIIHAKADELFFGLPEEQTVWMSHSDKVIEIPEGFESIADSPSTPYAAIEDKERRIYGVQFHPEVRHTEYGNDILRNFVRRICDCTGEWTMENFIDLEIEKIREQVGDRKVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMDKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMQFELIEPINTLFKDEVRALGIELGIPEHLVWRQPFPGPGLGIRVLGEITEEKLEIVRESDAILREVIREEGLEREIWQYFTVLPGMRSVGVMGDYRTYDYTIGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDVTSKPPSTIEWE
>LR134360.1|VEG65414.1|2587175_2588642_-|putative-inositol-monophosphate-dehydrogenase
MWENKFAKESLTFDDVLLIPAESNVLPKEVDLSVELSDRIKLNIPVVSAGMDTVTESKMAIAMARQGGLGVVHKNMNIEDQADEVQKVKRSENGVISNPFFLTPEEKVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKISDVMTKEDLITAPVGTTLDEAEAILQKHKIEKLPLTENGKLKGLITIKDIEKVHEYPFAAKDSLGRLLCAAAIGISKDTDIRAEKLVEAGVDALVIDTAHGHSQGVIDQVKHIKQTYPEVTVIAGNVATGEATKALFEAGADVVKVGIGPGSICTTRIVAGVGVPQITAVYDCATEARKQGKAIIADGGIKFSGDIVKALAAGGHAVMLGSLLAGTEESPGETEIFQGRQYKTYRGMGSLGAMESGSNDRYFQEDKVPKKYVPEGIEGRIAYKGLLQDNIYQLMGGVRSGMGYTGSHNLKELREEAMFTRMGPAGLAESHPHNIQITKESPNYSR
>LR134360.1|VEG65415.1|2588675_2589944_-|putative-xanthine-permease
MKNFVLSLQHLLAMYAGAILVPIIVGTSLKFTPEEIAYLVTVDIFMCGVATFLEANKITGTGLPIVLGCTFTAVAPMILIGQTKGLDVLYGSLFISGILVVLIAPVFSFVVKFFPPVVTGSVVTIIGINLMPVAMNYVAGGQGSKDYGDMKNIILGFATLLIILILQRFTRGFLKSIAILIGLFAGTALAGVFGVVDLNQVGTAHWFELPRPFRFAGFGFDLGATLVFFIVALVSLIESTGVYTALSKITGRTLERKDYRKGYTAEGLAIILGSIFNAFPYTAYSQNVGLVSLSGVKKNNVIYGMVILLLICGCIPKLGALANVIPLSVLGGAMIAMFGMVMAYGVSILGGIDFKNQNNLLIIAVSVGLGTGISAVPEAFKAMGEQFAWLTQNGIVLGAISAIILNFFFNGLKYQQNEENVK
>LR134360.1|VEG65416.1|2589945_2590524_-|xanthine-phosphoribosyltransferase
MEALRQKVKEDGVVIGEKILKVDGFLNHQIDAQLMYDIGETFYEQFKDQKVTKILTVEASGIAPAIMVAYKFGVPCLFAKKAKPNTLNKGFYQTDIHSFTKNKTNSVIISEEFLGEHDRVLIIDDFLANGDASLGLNRLVHQAGAETVGVGIVVEKSFQQGRTRLEEAGLKVSSLCEVASLSGNKVTLVGEE

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Crispr_ID: LR134360_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134360_2

2582825-2582911

Orphan

Consensus_repeat	Method
TCTAGAGGTTTTCTAGAGGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134360_2

>merge|LR134360|2|2582825-2582911|CRISPRCasFinder
CCTTTCAGTTTTCTAGAGGTTTTCTAGAGGTTTTCTAGATTTTTCCTAGATTTTCCTAGATTTTCCTAGATTTTCTCTAGAGGTTTT

>LR134360|2|2|2582825-2582911|CRISPRCasFinder
CCTTTCAGTTTTCTAGAGGTTTT	CTAGAGGTTTTCTAGATTTTTCCTAGATTTTCCTAGATTTT
CCTAGATTTTCTCTAGAGGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
LR134360.1\|VEG65408.1\|2582113_2582815_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225420
LR134360.1\|VEG65400.1\|2572813_2574712_-\|putative-glycosyl-transferase	unknown	unknown	gnl\|CDD\|366154
LR134360.1\|VEG65404.1\|2577319_2578282_-\|radical-SAM-domain-containing-protein	unknown	unknown	gnl\|CDD\|188593
LR134360.1\|VEG65406.1\|2579960_2580365_+\|mutT/nudix-family-protein	unknown	unknown	gnl\|CDD\|240032
LR134360.1\|VEG65402.1\|2575920_2576556_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
LR134360.1\|VEG65411.1\|2583683_2584307_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
LR134360.1\|VEG65403.1\|2576571_2577258_-\|Zn-dependent-proteases	unknown	unknown	unknown
LR134360.1\|VEG65401.1\|2575182_2575905_-\|membrane-protein	unknown	unknown	unknown
LR134360.1\|VEG65416.1\|2589945_2590524_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
LR134360.1\|VEG65407.1\|2581314_2582148_-\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225420
LR134360.1\|VEG65409.1\|2583109_2583388_-\|pathogenicity-island-protein	unknown	unknown	unknown
LR134360.1\|VEG65410.1\|2583441_2583540_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134360.1\|VEG65418.1\|2591743_2592409_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134360.1\|VEG65405.1\|2579203_2579800_-\|Staphylococcal-complement-inhibitor-SCIN-like-protein	unknown	unknown	unknown
LR134360.1\|VEG65415.1\|2588675_2589944_-\|putative-xanthine-permease	unknown	unknown	gnl\|CDD\|274468
LR134360.1\|VEG65414.1\|2587175_2588642_-\|putative-inositol-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
LR134360.1\|VEG65399.1\|2571642_2572635_-\|putative-leukocidin-S-subunit	unknown	unknown	gnl\|CDD\|369625
LR134360.1\|VEG65417.1\|2591255_2591636_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378584
LR134360.1\|VEG65413.1\|2585617_2587159_-\|GMP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|234614
LR134360.1\|VEG65412.1\|2584399_2584789_+\|Integrase	unknown	unknown	gnl\|CDD\|379665

Protein	Function_ID	Function_description	E-value
LR134360.1\|VEG65408.1\|2582113_2582815_-\|putative-transcriptional-regulator	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.34964e-16
LR134360.1\|VEG65400.1\|2572813_2574712_-\|putative-glycosyl-transferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	2.92039e-23
LR134360.1\|VEG65404.1\|2577319_2578282_-\|radical-SAM-domain-containing-protein	gnl\|CDD\|188593	TIGR04078, radical_SAM_domain_protein_protein, peptide modification radical SAM enzyme, YydG family. Members of this radical SAM protein family for peptide modification occur only in the context of members of family TIGR04077, which average about 50 amino acids in length. In Bacillus subtilis, this protein (YydG) appears to act on its cognate target peptide (YydF) prior to its export, and result in the creation of a signaling molecule that induces the LiaRS two-component system. [Regulatory functions, Protein interactions].	1.3343e-142
LR134360.1\|VEG65406.1\|2579960_2580365_+\|mutT/nudix-family-protein	gnl\|CDD\|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.66716e-22
LR134360.1\|VEG65402.1\|2575920_2576556_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.46724e-18
LR134360.1\|VEG65411.1\|2583683_2584307_+\|transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.42494e-15
LR134360.1\|VEG65417.1\|2591255_2591636_+\|transcriptional-regulator	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	1.54242e-05
LR134360.1\|VEG65416.1\|2589945_2590524_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	6.77236e-115
LR134360.1\|VEG65407.1\|2581314_2582148_-\|putative-transcriptional-regulator	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	3.30768e-14
LR134360.1\|VEG65414.1\|2587175_2588642_-\|putative-inositol-monophosphate-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
LR134360.1\|VEG65412.1\|2584399_2584789_+\|Integrase	gnl\|CDD\|379665	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain. This domain is found in a variety of phage integrase proteins.	8.00939e-13
LR134360.1\|VEG65415.1\|2588675_2589944_-\|putative-xanthine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.12922e-168
LR134360.1\|VEG65399.1\|2571642_2572635_-\|putative-leukocidin-S-subunit	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	4.49347e-59
LR134360.1\|VEG65413.1\|2585617_2587159_-\|GMP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0

>LR134360.1|VEG65408.1|2582113_2582815_-|putative-transcriptional-regulator
MEQEFLNEGTTIEYKKAQDGVPKSFWETYSSFSNTEGGTIYLGVSEEKQGCVVTGVKNANQYIQTIVDTANDKKFTNFNNIYNSNIKVLKEDGLEYIKIYIPEVKSENKPLHVKNNINNSYIRRNDSDHKMSGEEIRRFLRDADPKSDSELLSNFNIDDLDLDAVKKYKNLIHERNSDMDILSMDNWEFLKRYGAVGKDRIENEFKLKKGALLFFGKEQAILDVFSKFPFRLS
>LR134360.1|VEG65407.1|2581314_2582148_-|putative-transcriptional-regulator
MFFPNFHLDYRNRTHYSEDERWIDRVASGEVGNEEVNLFNFYNTVLNRLVNTVLDGFALNPETQVRQGVKTDVEVSLREALANLLIHADYEDNSSIIVEAYKNNYVFINPGELLVTKEEFARGGESNPRNSTIVTLFRKAGYSERAGSGGMKIFRAALKNKFRMPEIHSSEGKTKLKIWKIDLVDSYENLIEQEKTILRYIVKENRKIKMKEIEALEGFTEYIAKTNVNSLIDKGIVKKFGKSRSTTYGLKPNSSEMIANIEHNMRNMQESIINENR
>LR134360.1|VEG65406.1|2579960_2580365_+|mutT/nudix-family-protein
MPPKHIVSASCVVLNDENNILLIKSPLRGWEIPGGQIENGETIREGVIREVKEESGIDVELTEFCGVFQNTEHSIINNLFKGEYIGGKLTTSDESLEVGFFIYTEVMEKVTWGNFTERIHLCFSEKEKPFLISF
>LR134360.1|VEG65405.1|2579203_2579800_-|Staphylococcal-complement-inhibitor-SCIN-like-protein
MNFKQFLLSGLAVALLGSAGANVFSNQAEAASYGAYEFRDYDVTAKENLKNLLNASSYYKAMAKESGARFYQNKLNQELHFAKKQQNASNDSQVVTAINRLSAVYNEVFQIHLQTEKGSSDVQSKKTELQNLIIKANSLLTESHHSMNQDEAQLKKTVEQAKTVLNQAQPGYELVNAISSVQQGIKNVEQYKAFVNHR
>LR134360.1|VEG65404.1|2577319_2578282_-|radical-SAM-domain-containing-protein
MYNKSVSINLVSKCNAACAHCCFSCSPQASIKMDDSYIKETVLEFSKNPNIEVISFTGGEIFLNYKFLEELLIITKSYNKKVTLISNGFWGSSRKLLKKYFSDFKKYNVIALTISYDEYHAPFVKLESIKNIFKFRMKYPEIDVSLNMAVTKDKMSNTILSELGSSVIGVKITKFPIITVGAAKDKISKNNIHNFYNIEKDRDVLYCPGYEIVYHHDGEIYPCCSPAIFETQISLREEKYQTLERTIEKLNSNILLYIIRREGFNWFLDILKEQKLLNDFGIPLDFPSVCSVCGSLFNDQYKINFFKPYMEKYYYETIKI
>LR134360.1|VEG65403.1|2576571_2577258_-|Zn-dependent-proteases
MYYRNSVGAIEPNIINMLTDYPEKVNKCSFYTYIFFLVVMVFINNIYVLNLQENIEPKINNSILLFVILYFLMNIIFHELGHIYSLKFFGRKIDKVGFKLNFYVFPAFYVQMNETYMLSQIDKIIVHSFGLFVNFALINFIQLLNILIINNISLTLSYMLFSSTMIWNLVPMLNSDGYKIMLALLSLDEFSNFTKNHWLVLIFQIIGVSIALNTLIHWVIYWSEYLFL
>LR134360.1|VEG65402.1|2575920_2576556_-|ABC-transporter-ATP-binding-protein
MKINNYSLKVKGKKLVENCDLNFYPGQINHIVGKNGVGKSQLAKDFMLNNSRNIPKSISDNTTLISSFSNIPNDITKEFLLVLLKAKFPNSSPTFSEINKILKIEEIPSKVLIKNMSDGQKQKLKLLSFLLEDNSLIILDEITNALDKKTVNEIYLFINDFIKNNPSKTIVNITHNLSDLSSIPGKYFIFKDYRIEEYLSKEEVINDYINL
>LR134360.1|VEG65401.1|2575182_2575905_-|membrane-protein
MKLEFRKSIANKIVLTLGPLFIFLFLLGYFLPVGIDKVKSLSYGQYFFSAYTVLTEFGFLLFSFIISYFINKEYSNKNTLFYKLIGENIFSFFYKKVAILFLECLIFIFLGITVVSLIFSNFSHFILLIILFSLVVLQYILIVGTISILSPNVLISIGFSIIYWIVSIILVAVNKKIFGILAPFEASNSMYLSVEKILKNKEGLINLNDITIIIIFFMLIFIVNFIILALSKKRWLKLGM
>LR134360.1|VEG65400.1|2572813_2574712_-|putative-glycosyl-transferase
MTKDLAIIVPVYNKELFLDDTMKSIDNLDIDKSEIEVIFIDDVSTDQSLEKLKVYENEYDYVKVVELEENTGSPSTPRNVGVEVSDSKYITFLDADDWLDAEGFPKLLQQALDTQNDILFGQSLRHKDHSISKIARFSSYETAYYLVPYEIDKIFRAVGPPGKIIRASVIKENDIQFEHMKYGEDKLFFTEVIAKAQSAGMNDAVAYHVNRYGVNQSLISETDIFEKTSCNLEVLKKLFELDIPETARHNAISRIIEMDYLSRLFMNKRFLKSEDKQLFYDAFAEMETILDRHHLNIKDYLTEDKYEKVYQLLSQSDKEKAVKLIEILVKGERAPRYVSNGLVHFVLPETLQEIAPLTEEFFAVYSGTEEADGQFYEVIQLYKKMAAQISRVQLVKLGDESVTKDVGYQVRGGRLRVPTKELEEADFNFNIQITYDYYRPCTVNMNLPSAIKHHALKRQQFKAEFEDKRFKNETNQPKFVDTTKYYDENPGKVFAAKQFKVYEDVEFQKEAPREIEVGELFTVEDIQYTEKGTPRLTLKDGSVVTANKKFVSVLDEAKGKDYLIEPPRKVQVLKVCKAYNDRNFKDEAGAKFAKDDIENITKIVFSSNGTPRLKTDKGIYMTANRNFVEPIQ
>LR134360.1|VEG65399.1|2571642_2572635_-|putative-leukocidin-S-subunit
MKWKEMLVTLIPASVLILGTIMPSEVIARDIKQDEIGKDGQVTKRTQVGSDINGGFTQILNFDFIDDPKYDKDALVLSTKGNIASQLEYGKFRENPLFFSQMRFPGEFGVRIHVKDNPKTEILDYLPKNNIESVDVSETFGYNIGGSISSNESGSITGGVNYSKTINYKQNNYRTLLSSDTSNQSVGWNVIASSLFYNGHTNVRGDLNLFRNDAGDRIEHDPRTFLAGKSTLPSLVRSGFTPDFLTYLSNDKQNTKTQITVRYQRLNDEIDAAFYSSNFAIVPQMGRYYMNISGNAFTATYEIDWKNKKVKMLKQESEQIGKSPLEKAGE
>LR134360.1|VEG65409.1|2583109_2583388_-|pathogenicity-island-protein
MIMDIQLIVAIKNMNVVTIITTEDEKLQAMRSVKNLGDGRMKRYEVLNKLNYKKKGGVYEYDDNNQDTWSVFFDDRKYRKLLGDLDNLLNET
>LR134360.1|VEG65410.1|2583441_2583540_-|Uncharacterised-protein
MSSIDEKLSSKLREKKARENITLQQVSKEIGI
>LR134360.1|VEG65411.1|2583683_2584307_+|transcriptional-regulator
MENRIAELRKEKNMTLKQLAEELNIRDNTLSQYETGKRNPQSGLLQEIANFFGVSMEYILKATDKRDYPIVDNSSAIELLEKIANEKEFNYSHISKNTALNLSLWIINNMDYIKEQHPNLLYTASFLVKSTISENKILQHYSEMRKKQFKIVDEIDDILLEREFYGASVEQVLEFLHQSERIGYEHTKKLMEYIRQLPTDEYEDEDF
>LR134360.1|VEG65412.1|2584399_2584789_+|Integrase
MIKKYKKKDSSIAYMFVAYSGTDPVTGKQKRTTRRGFKTEREAKIAEAKLQTEVSQNGFLNNDITTFKEVYELWLAQHQNTVRESTYQRVLTLFDTAILEHFKNVPIKKITIPYCQKVINKWNKKYSDI
>LR134360.1|VEG65413.1|2585617_2587159_-|GMP-synthase-(glutamine-hydrolyzing)
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSYTIDPEIYNLGVPVLGICYGMQLTTKLLGGKVERANEREYGKAIIHAKADELFFGLPEEQTVWMSHSDKVIEIPEGFESIADSPSTPYAAIEDKERRIYGVQFHPEVRHTEYGNDILRNFVRRICDCTGEWTMENFIDLEIEKIREQVGDRKVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMDKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMQFELIEPINTLFKDEVRALGIELGIPEHLVWRQPFPGPGLGIRVLGEITEEKLEIVRESDAILREVIREEGLEREIWQYFTVLPGMRSVGVMGDYRTYDYTIGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDVTSKPPSTIEWE
>LR134360.1|VEG65414.1|2587175_2588642_-|putative-inositol-monophosphate-dehydrogenase
MWENKFAKESLTFDDVLLIPAESNVLPKEVDLSVELSDRIKLNIPVVSAGMDTVTESKMAIAMARQGGLGVVHKNMNIEDQADEVQKVKRSENGVISNPFFLTPEEKVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKISDVMTKEDLITAPVGTTLDEAEAILQKHKIEKLPLTENGKLKGLITIKDIEKVHEYPFAAKDSLGRLLCAAAIGISKDTDIRAEKLVEAGVDALVIDTAHGHSQGVIDQVKHIKQTYPEVTVIAGNVATGEATKALFEAGADVVKVGIGPGSICTTRIVAGVGVPQITAVYDCATEARKQGKAIIADGGIKFSGDIVKALAAGGHAVMLGSLLAGTEESPGETEIFQGRQYKTYRGMGSLGAMESGSNDRYFQEDKVPKKYVPEGIEGRIAYKGLLQDNIYQLMGGVRSGMGYTGSHNLKELREEAMFTRMGPAGLAESHPHNIQITKESPNYSR
>LR134360.1|VEG65415.1|2588675_2589944_-|putative-xanthine-permease
MKNFVLSLQHLLAMYAGAILVPIIVGTSLKFTPEEIAYLVTVDIFMCGVATFLEANKITGTGLPIVLGCTFTAVAPMILIGQTKGLDVLYGSLFISGILVVLIAPVFSFVVKFFPPVVTGSVVTIIGINLMPVAMNYVAGGQGSKDYGDMKNIILGFATLLIILILQRFTRGFLKSIAILIGLFAGTALAGVFGVVDLNQVGTAHWFELPRPFRFAGFGFDLGATLVFFIVALVSLIESTGVYTALSKITGRTLERKDYRKGYTAEGLAIILGSIFNAFPYTAYSQNVGLVSLSGVKKNNVIYGMVILLLICGCIPKLGALANVIPLSVLGGAMIAMFGMVMAYGVSILGGIDFKNQNNLLIIAVSVGLGTGISAVPEAFKAMGEQFAWLTQNGIVLGAISAIILNFFFNGLKYQQNEENVK
>LR134360.1|VEG65416.1|2589945_2590524_-|xanthine-phosphoribosyltransferase
MEALRQKVKEDGVVIGEKILKVDGFLNHQIDAQLMYDIGETFYEQFKDQKVTKILTVEASGIAPAIMVAYKFGVPCLFAKKAKPNTLNKGFYQTDIHSFTKNKTNSVIISEEFLGEHDRVLIIDDFLANGDASLGLNRLVHQAGAETVGVGIVVEKSFQQGRTRLEEAGLKVSSLCEVASLSGNKVTLVGEE
>LR134360.1|VEG65417.1|2591255_2591636_+|transcriptional-regulator
MADILILTSQDEIFDALKRKLDEGYTKDELSVISKNKLHIDSVESTDMKVQSTSGTFSDRVARLLTGEDGEEAVLAHYDLTDTEKKVCKREILNGNIIILAGKHPHSRKEFKNEYDEKKPEKEYEI
>LR134360.1|VEG65418.1|2591743_2592409_+|Uncharacterised-protein
MEFKLIKQTSDPLYEAALNLYDNYQFGNVRQQHHVFKQSLENKRTKNDYVFIVGLDNDEVVSLATAHYEATTNSAFIIYLVAIDTPEREQYLTDTLAQVQNELDHLAERVHNREVNFFMMEALPLPESTEEKDADLLFKRHRFLNDHGFEEQTEIDYKRPGLDKEMPPIALNLFLHTRIPLTKDIYATSVKSCYILKYVFANHLSRKRVYPLLEEMDLRKS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134360_1	1.1\|2580443\|29\|LR134360\|CRISPRCasFinder	2580443-2580471	29	NC_007021	Staphylococcus phage Twort, complete genome	81319-81347	7	0.759
LR134360_1	1.1\|2580443\|29\|LR134360\|CRISPRCasFinder	2580443-2580471	29	MT151386	Staphylococcus virus Twort, complete genome	123848-123876	7	0.759

1. spacer 1.1|2580443|29|LR134360|CRISPRCasFinder matches to NC_007021 (Staphylococcus phage Twort, complete genome) position: , mismatch: 7, identity: 0.759

taattattcatcaaactatatccttaatt	CRISPR spacer
aacccactcatcgaactatatccttaata	Protospacer
 * ..*.*****.***************

2. spacer 1.1|2580443|29|LR134360|CRISPRCasFinder matches to MT151386 (Staphylococcus virus Twort, complete genome) position: , mismatch: 7, identity: 0.759

taattattcatcaaactatatccttaatt	CRISPR spacer
aacccactcatcgaactatatccttaata	Protospacer
 * ..*.*****.***************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

604735 : 661603

Bacillus_phage(30.0%)

holin,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG63472.1\|604735_605845_+\|transposase	putative transposase	W5R8S3	Staphylococcus_phage	3.0e-144	67.8
VEG63473.1\|606006_606714_+	putative NAD(P)H-flavin oxidoreductase	NA	NA	NA	NA
VEG63474.1\|606905_607898_+	D-specific D-2-hydroxyacid dehydrogenase	Q89388	Paramecium_bursaria_Chlorella_virus	7.9e-40	30.8
VEG63475.1\|607949_609746_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	4.6e-46	29.7
VEG63476.1\|609729_611517_+	putative ABC transporter ATP-binding/permease	W8CYL7	Bacillus_phage	2.1e-46	27.7
VEG63477.1\|611571_611853_-	acetyltransferase	NA	NA	NA	NA
VEG63478.1\|612144_613170_+	zinc ABC transporter periplasmic-binding protein ZnuA	NA	NA	NA	NA
VEG63479.1\|613330_613765_+	putative transcription regulator MarR family	NA	NA	NA	NA
VEG63480.1\|613832_614726_+	putative glyoxylase family protein	NA	NA	NA	NA
VEG63481.1\|615150_616584_+	melibiose:sodium symporter	NA	NA	NA	NA
VEG63482.1\|616599_617445_-	lactose operon transcription regulator	NA	NA	NA	NA
VEG63483.1\|617536_620545_+	beta-D-galactosidase	L0N6M2	Herpes_simplex_virus	3.6e-128	31.0
VEG63484.1\|620604_622557_-	putative fructose-bisphosphatase	NA	NA	NA	NA
VEG63485.1\|622785_623634_+	putative ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-13	29.0
VEG63486.1\|623630_624290_+	membrane protein	NA	NA	NA	NA
VEG63487.1\|624345_624966_-	putative alkaline phosphatase	NA	NA	NA	NA
VEG63488.1\|625491_626766_+	putative glucarate transporter	NA	NA	NA	NA
VEG63489.1\|626913_627216_+	monooxygenase family protein	NA	NA	NA	NA
VEG63490.1\|627338_628037_+	putative alpha-acetolactate decarboxylase	NA	NA	NA	NA
VEG63491.1\|628184_630086_+	Integral membrane protein	NA	NA	NA	NA
VEG63492.1\|630170_630584_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEG63493.1\|630809_632009_-	putative GTPases (G3E family) protein	NA	NA	NA	NA
VEG63494.1\|632287_632986_+	GTP pyrophosphokinase ywaC	NA	NA	NA	NA
VEG63495.1\|633702_635811_+	putative ATP-dependent Clp proteinase chain clpL	H6X3M6	Enterobacteria_phage	3.2e-115	37.9
VEG63496.1\|635987_636596_+	membrane protein	NA	NA	NA	NA
VEG63497.1\|636713_637316_-	transcriptional regulator	NA	NA	NA	NA
VEG63498.1\|637446_638127_+	putative gluconate operon transcriptional repressor	NA	NA	NA	NA
VEG63499.1\|638153_639689_+	putative gluconokinase	NA	NA	NA	NA
VEG63500.1\|639814_641176_+	putative gluconate permease	NA	NA	NA	NA
VEG63501.1\|641249_642071_+	Uncharacterised protein	NA	NA	NA	NA
VEG63502.1\|642138_643371_+	acetylornithine deacetylase	NA	NA	NA	NA
VEG63503.1\|643492_645667_-	polyphosphate kinase	NA	NA	NA	NA
VEG63504.1\|645880_647479_-	putative exopolyphosphatase	NA	NA	NA	NA
VEG63505.1\|647751_648216_+	lipoprotein	NA	NA	NA	NA
VEG63506.1\|648412_649198_+	protein of pXO2-46	NA	NA	NA	NA
VEG63507.1\|649339_650080_+\|protease	metal-dependent membrane protease	NA	NA	NA	NA
VEG63508.1\|650212_650884_+	putative ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.4e-19	35.9
VEG63509.1\|650880_651654_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
VEG63510.1\|651836_653030_+	putative transport protein	NA	NA	NA	NA
VEG63511.1\|653072_654437_-	putative para-nitrobenzyl esterase chain A	A0A0G2Y6W1	Acanthamoeba_polyphaga_mimivirus	7.1e-23	31.7
VEG63512.1\|654542_656201_-	putative amino acid transporter	NA	NA	NA	NA
VEG63513.1\|656708_657305_+	molecular chaperone GroEL	NA	NA	NA	NA
VEG63514.1\|658075_659326_+\|holin	putative glycine betaine/carnitine/choline ABC transporter (ATP-bindin) opuCA	Q6GZ03	Mycoplasma_phage	1.6e-21	53.8
VEG63515.1\|659325_659961_+\|holin	putative glycine betaine/carnitine/choline transport system permease	NA	NA	NA	NA
VEG63516.1\|659978_660920_+\|holin	putative glycine betaine/carnitine/choline ABC transporter (osmoprotec) opuCC	NA	NA	NA	NA
VEG63517.1\|660919_661603_+\|holin	putative glycine betaine/carnitine/choline transport system permease	NA	NA	NA	NA

DBSCAN-SWA_2

1177484 : 1209006

Staphylococcus_phage(92.59%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG64030.1\|1177484_1178873_+	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	8.5e-165	59.9
VEG64031.1\|1178876_1179884_+	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.3e-93	51.9
VEG64032.1\|1179880_1180138_-	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	7.3e-30	70.6
VEG64033.1\|1180227_1180701_+	low G+C gram positive nudix hydrolase YtkD	A0A2H4PQM4	Staphylococcus_phage	5.3e-34	46.4
VEG64034.1\|1180684_1181461_+	peptidase	A0A2H4PQM6	Staphylococcus_phage	3.3e-94	65.3
VEG64035.1\|1181511_1183104_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	2.7e-255	79.0
VEG64036.1\|1183491_1184688_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	1.2e-188	82.1
VEG64037.1\|1184785_1185685_+	Predicted HD superfamily hydrolase	A0A2H4PQQ8	Staphylococcus_phage	4.0e-99	74.8
VEG64038.1\|1185813_1186656_+	aldo keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.5e-111	68.6
VEG64039.1\|1186666_1187362_+	ADP-ribosyl-[dinitrogen reductase] glycohydrolase	A0A1J0FA18	Only_Syngen_Nebraska_virus	8.9e-14	30.7
VEG64040.1\|1187634_1187991_-	CrcB-like protein	NA	NA	NA	NA
VEG64041.1\|1187983_1188355_-	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	7.3e-39	67.8
VEG64042.1\|1188424_1188730_-	membrane protein	NA	NA	NA	NA
VEG64043.1\|1188914_1189631_+	putative translaldolase	M1PR54	Cyanophage	2.9e-20	35.1
VEG64044.1\|1189758_1190211_+	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	6.2e-16	42.9
VEG64045.1\|1190194_1190638_-	comK family protein	NA	NA	NA	NA
VEG64046.1\|1190630_1191131_-	RNA polymerase sigma factor sigS	A0A2H4PQT5	Staphylococcus_phage	1.4e-24	48.0
VEG64047.1\|1191333_1191555_+	putative staphylococcal protein	NA	NA	NA	NA
VEG64048.1\|1191873_1192719_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6JQU5	Staphylococcus_phage	1.8e-40	43.3
VEG64049.1\|1192846_1194328_+	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	6.5e-14	64.5
VEG64050.1\|1194733_1195783_+	diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	2.0e-118	58.3
VEG64051.1\|1195789_1196422_+	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	1.3e-72	63.3
VEG64052.1\|1196437_1197619_+	riboflavin biosynthesis protein	A0A2H4PQS2	Staphylococcus_phage	8.2e-169	71.8
VEG64053.1\|1197650_1198109_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.3e-57	78.3
VEG64054.1\|1198173_1199172_-	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	1.3e-114	64.2
VEG64055.1\|1199427_1200258_+	putative lysophospholipase	NA	NA	NA	NA
VEG64056.1\|1200450_1201407_+	L-lactate dehydrogenase	NA	NA	NA	NA
VEG64057.1\|1201471_1202029_-	rRNA methylase	A0A2H4PQV0	Staphylococcus_phage	3.6e-58	59.5
VEG64058.1\|1202033_1202990_-	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	4.3e-67	85.9
VEG64059.1\|1203258_1204437_+	major facilitator superfamily permease	A0A2H4PQR6	Staphylococcus_phage	8.2e-169	76.0
VEG64060.1\|1204925_1207340_+\|tRNA	leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	85.8
VEG64061.1\|1207360_1207678_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.3e-33	69.5
VEG64062.1\|1207734_1209006_-	flavoprotein	A0A2H4PQX1	Staphylococcus_phage	1.9e-38	73.5

DBSCAN-SWA_3

1322104 : 1331245

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG64164.1\|1322104_1323121_+	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	8.5e-05	29.1
VEG64165.1\|1323110_1324136_+\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
VEG64166.1\|1324151_1325294_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.4e-87	45.5
VEG64167.1\|1325307_1325568_+	preprotein translocase, YajC subunit	A0A1B1IVR5	uncultured_Mediterranean_phage	6.3e-05	41.0
VEG64168.1\|1326019_1328296_+	bifunctional preprotein translocase subunit SecD/SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.0e-30	36.1
VEG64169.1\|1328430_1330707_+	putative single-strand DNA-specific exonuclease	A7KV88	Bacillus_phage	1.9e-76	31.2
VEG64170.1\|1330726_1331245_+	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.2e-28	45.1

DBSCAN-SWA_4

1768261 : 1850257

106

uncultured_Caudovirales_phage(41.94%)

integrase,tail,portal,tRNA,holin,protease,terminase

attL 1798657:1798672|attR 1850574:1850589

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG64582.1\|1768261_1769170_-	putative aspartate transcarbamoylase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	1.4e-27	32.9
VEG64583.1\|1769211_1770498_-	uracil permease	Q9KX94	Enterobacteria_phage	1.1e-57	35.7
VEG64584.1\|1770722_1771250_-	bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase	NA	NA	NA	NA
VEG64585.1\|1771802_1774922_-	type I restriction-modification system endonuclease	A0A220A398	Liberibacter_phage	8.8e-69	29.6
VEG64586.1\|1774911_1776180_-	type I restriction-modification system specificity protein	A0A1V0SLK8	Klosneuvirus	1.6e-16	29.9
VEG64587.1\|1776169_1777138_-	Type I restriction-modification system,DNA-methyltransferase subunit M	A0A220A2U5	Liberibacter_phage	6.1e-21	27.7
VEG64588.1\|1777152_1777683_-	type I restriction-modification system DNA methylase	NA	NA	NA	NA
VEG64589.1\|1777890_1778808_-	putative ribosomal large subunit pseudouridine synthase D	A0A2H4UV25	Bodo_saltans_virus	5.8e-13	32.1
VEG64590.1\|1778820_1779303_-	lipoprotein signal peptidase	NA	NA	NA	NA
VEG64591.1\|1779409_1779898_-	secretory antigen SsaA	NA	NA	NA	NA
VEG64592.1\|1779906_1780701_-	glyoxalase	NA	NA	NA	NA
VEG64593.1\|1780914_1783662_-\|tRNA	isoleucyl-tRNA synthetase	A0A2I2L3Y0	Orpheovirus	2.8e-87	26.6
VEG64594.1\|1783930_1784539_-	cell-division initiation protein	NA	NA	NA	NA
VEG64595.1\|1784563_1785289_-	putative RNA-binding protein	NA	NA	NA	NA
VEG64596.1\|1785410_1785707_-	cell division protein	NA	NA	NA	NA
VEG64597.1\|1785719_1786340_-	cell division-like FtsZ-interacting protein	NA	NA	NA	NA
VEG64598.1\|1786345_1787020_-	alanine racemase	NA	NA	NA	NA
VEG64599.1\|1787032_1787827_-	multi-copper polyphenol oxidoreductase laccase	NA	NA	NA	NA
VEG64600.1\|1788055_1789228_-	cell division protein FtsZ	NA	NA	NA	NA
VEG64601.1\|1789257_1790670_-	putative cell division protein FtsA	NA	NA	NA	NA
VEG64602.1\|1790772_1791693_-	putative cell division protein	NA	NA	NA	NA
VEG64603.1\|1791707_1793057_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase	NA	NA	NA	NA
VEG64604.1\|1793060_1794026_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
VEG64605.1\|1794124_1796278_-	penicillin-binding protein Pbp1	NA	NA	NA	NA
VEG64606.1\|1796258_1796663_-	putative cell division protein	NA	NA	NA	NA
VEG64607.1\|1796682_1797618_-	S-adenosyl-methyltransferase MraW	NA	NA	NA	NA
VEG64608.1\|1797632_1798064_-	cell division protein MraZ	NA	NA	NA	NA
VEG64609.1\|1798206_1799820_-	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA
1798657:1798672	attL	NA	NA	NA	NA
VEG64610.1\|1799969_1800419_+	GNAT family acetyltransferase	NA	NA	NA	NA
VEG64611.1\|1800470_1801151_-	putative haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
VEG64612.1\|1801356_1801539_+	Uncharacterised protein	NA	NA	NA	NA
VEG64613.1\|1801667_1802630_+	Uncharacterised protein	NA	NA	NA	NA
VEG64614.1\|1802678_1802816_-	phenol soluble modulin	NA	NA	NA	NA
VEG64615.1\|1802871_1803006_-	phenol soluble modulin	NA	NA	NA	NA
VEG64616.1\|1803563_1804274_-	Uncharacterised protein	NA	NA	NA	NA
VEG64617.1\|1804821_1806285_-	N-acetylmuramoyl-L-alanine amidase family protein	U3PDY3	Staphylococcus_phage	1.1e-210	79.1
VEG64618.1\|1806281_1806758_-\|holin	holin, phage phi LC3 family	U3PJ27	Staphylococcus_phage	1.4e-66	79.9
VEG64619.1\|1806805_1807204_-	hypothetical phage membrane protein	A0A2H4JCM1	uncultured_Caudovirales_phage	2.0e-58	87.9
VEG64620.1\|1807190_1807613_-	hypothetical phage membrane protein	A0A2H4JID2	uncultured_Caudovirales_phage	3.1e-62	79.3
VEG64621.1\|1807650_1807803_-	phage protein	NA	NA	NA	NA
VEG64622.1\|1807822_1808194_-	Protein of uncharacterised function (DUF2977)	NA	NA	NA	NA
VEG64623.1\|1808193_1809672_-\|tail	putative phage tail protein	A8ATB2	Listeria_phage	6.7e-43	54.0
VEG64624.1\|1809671_1811636_-	cell wall surface anchor family protein	U5PWM6	Bacillus_phage	6.0e-39	28.7
VEG64625.1\|1811632_1811863_-	Uncharacterised protein	NA	NA	NA	NA
VEG64626.1\|1811855_1813445_-\|tail	prophage endopeptidase tail family protein	A0A2H4JAF8	uncultured_Caudovirales_phage	2.0e-258	79.9
VEG64627.1\|1813454_1814309_-\|tail	phage tail family protein	A0A2H4J7E0	uncultured_Caudovirales_phage	1.6e-134	81.0
VEG64628.1\|1814310_1818249_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A2H4JDT7	uncultured_Caudovirales_phage	1.5e-286	80.3
VEG64629.1\|1818423_1819353_-	Uncharacterised protein	A0A172JI52	Bacillus_phage	7.4e-40	33.8
VEG64630.1\|1819438_1820464_-\|tail	phage tail tape measure protein	A0A2H4J669	uncultured_Caudovirales_phage	4.8e-157	96.7
VEG64631.1\|1820492_1820645_-	Uncharacterised protein	A0A2H4JAE7	uncultured_Caudovirales_phage	6.8e-20	94.0
VEG64632.1\|1820677_1821040_-	phage protein	A0A2H4J9U5	uncultured_Caudovirales_phage	8.1e-59	97.5
VEG64633.1\|1821099_1821279_-	phi 11 orf35	A0A0N9STM6	Staphylococcus_phage	4.9e-09	50.9
VEG64634.1\|1821298_1821922_-\|tail	phage major tail, phi13 family protein	A0A2H4JH93	uncultured_Caudovirales_phage	8.7e-69	63.3
VEG64635.1\|1821933_1822329_-	putative bacteriophage protein	A0A2H4JBV0	uncultured_Caudovirales_phage	2.8e-20	40.2
VEG64636.1\|1822349_1822739_-	bacteriophage protein	A0A2H4J3L8	uncultured_Caudovirales_phage	5.3e-32	53.8
VEG64637.1\|1822728_1823097_-	phage protein	NA	NA	NA	NA
VEG64638.1\|1823080_1823368_-	Bacteriophage	A0A059T7R0	Listeria_phage	1.0e-11	47.3
VEG64639.1\|1823385_1824597_-	phage protein	Q4ZD74	Staphylococcus_phage	5.8e-85	45.4
VEG64640.1\|1824608_1825316_-\|protease	Prophage Clp protease-like protein	A0A2H4J8Y7	uncultured_Caudovirales_phage	6.0e-42	50.8
VEG64641.1\|1825278_1826457_-\|portal	putative phage portal protein	A8AT96	Listeria_phage	5.8e-106	50.8
VEG64642.1\|1826472_1828143_-\|terminase	putative phage terminase, large subunit	A0A059T7Q8	Listeria_phage	8.8e-201	60.9
VEG64643.1\|1828139_1828502_-	phage protein	A0A2H4JAH7	uncultured_Caudovirales_phage	3.9e-29	56.2
VEG64644.1\|1828688_1829423_-	phage-associated homing endonuclease	A0A1W6JQ75	Staphylococcus_phage	1.4e-78	59.0
VEG64645.1\|1829707_1830154_-	phage transcriptional regulator	A0A2H4JB30	uncultured_Caudovirales_phage	2.4e-57	71.6
VEG64646.1\|1830202_1830673_-	recombination protein U	H9A0M5	Staphylococcus_phage	4.6e-46	57.8
VEG64647.1\|1830669_1830855_-	Uncharacterised protein	Q4ZC78	Staphylococcus_virus	6.9e-06	55.2
VEG64648.1\|1830851_1831025_-	transcriptional activator RinB family protein	Q4ZC79	Staphylococcus_virus	5.2e-16	75.4
VEG64649.1\|1831021_1831255_-	Protein of uncharacterised function (DUF1381)	A0A1W6JQD0	Staphylococcus_phage	6.0e-15	91.5
VEG64650.1\|1831266_1831443_-	Uncharacterised protein	NA	NA	NA	NA
VEG64651.1\|1831457_1831664_-	Cro/CI family transcriptional regulator	A0A2H4JCF9	uncultured_Caudovirales_phage	1.2e-11	58.5
VEG64652.1\|1831708_1832008_-	phage DNA binding protein	U3PBR4	Staphylococcus_phage	1.5e-42	85.9
VEG64653.1\|1832000_1832222_-	Uncharacterised protein	NA	NA	NA	NA
VEG64654.1\|1832222_1832465_-	Uncharacterised protein	NA	NA	NA	NA
VEG64655.1\|1832461_1832656_-	Uncharacterised protein	Q4ZC85	Staphylococcus_virus	4.2e-22	76.2
VEG64656.1\|1832645_1833047_-	phage protein	A0A1S5SFT9	Streptococcus_phage	1.9e-13	33.6
VEG64657.1\|1833043_1833454_-	putative phage PVL protein	NA	NA	NA	NA
VEG64658.1\|1833440_1833644_-	Uncharacterised protein	Q4ZC88	Staphylococcus_virus	5.8e-14	62.7
VEG64659.1\|1833595_1834282_-	Type I restriction-modification system methyltransferase subunit	B7T0H3	Staphylococcus_virus	1.5e-82	67.3
VEG64660.1\|1834281_1834734_-	Nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
VEG64661.1\|1834726_1835224_-	Protein of unknwon function (DUF3310)	Q4Z910	Staphylococcus_phage	6.6e-11	54.3
VEG64662.1\|1835224_1835746_-	PVL ORF-50-like family	Q4ZC91	Staphylococcus_virus	1.3e-17	31.8
VEG64663.1\|1835748_1835937_-	Uncharacterised protein	NA	NA	NA	NA
VEG64664.1\|1835911_1836142_-	hypothetical phage-related protein	A0A2H4J7L3	uncultured_Caudovirales_phage	7.2e-13	49.3
VEG64665.1\|1836138_1837371_-	prophage L54a, replicative DNA helicase	A0A2H4JFD2	uncultured_Caudovirales_phage	2.8e-143	62.6
VEG64666.1\|1837363_1837720_-	phage protein	A0A2H4J7Z2	uncultured_Caudovirales_phage	4.0e-26	54.9
VEG64667.1\|1837719_1838430_-	putative phage replication protein	A0A2H4JC54	uncultured_Caudovirales_phage	9.0e-70	71.4
VEG64668.1\|1838416_1839100_-	phage protein	Q4ZC99	Staphylococcus_virus	2.7e-100	75.9
VEG64669.1\|1839111_1839543_-	single-strand DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	2.3e-52	69.9
VEG64670.1\|1839542_1840223_-	ERF family protein	A0A1J0MF78	Staphylococcus_phage	2.3e-107	87.7
VEG64671.1\|1840223_1840709_-	siphovirus Gp157 family protein	A0A1J0MFG4	Staphylococcus_phage	3.4e-60	76.4
VEG64672.1\|1840708_1840918_-	Uncharacterised protein	NA	NA	NA	NA
VEG64673.1\|1841000_1841165_-	Uncharacterised protein	NA	NA	NA	NA
VEG64674.1\|1841161_1841392_-	Uncharacterized protein conserved in bacteria	A0A2H4J5V1	uncultured_Caudovirales_phage	2.2e-22	66.7
VEG64675.1\|1841451_1841658_+	Uncharacterised protein	A0A2H4JCI8	uncultured_Caudovirales_phage	5.6e-17	60.6
VEG64676.1\|1842064_1842265_-	Uncharacterised protein	A0A2H4J2L6	uncultured_Caudovirales_phage	4.6e-08	59.6
VEG64677.1\|1842276_1843044_-	putative antirepressor, phage associated	I6TJS0	Staphylococcus_virus	1.5e-110	80.9
VEG64678.1\|1843057_1843282_-	helix-turn-helix family protein	A0A2H4JEA4	uncultured_Caudovirales_phage	1.0e-35	98.6
VEG64679.1\|1843438_1843768_+	helix-turn-helix family protein	A0A2H4J5G9	uncultured_Caudovirales_phage	3.0e-52	94.5
VEG64680.1\|1843782_1844250_+	phage protein	A0A2H4J463	uncultured_Caudovirales_phage	3.6e-51	66.4
VEG64681.1\|1844352_1844595_+	Uncharacterised protein	NA	NA	NA	NA
VEG64682.1\|1844858_1845005_+	Uncharacterised protein	NA	NA	NA	NA
VEG64683.1\|1845001_1845622_-	Uncharacterised protein	NA	NA	NA	NA
VEG64684.1\|1845753_1846782_+\|integrase	integrase	A0A1Q1PVY8	Staphylococcus_phage	5.4e-116	60.6
VEG64685.1\|1847457_1848399_-	HIRAN domain-containing protein	R9QTP0	Staphylococcus_phage	1.1e-46	59.4
VEG64686.1\|1848477_1848948_-	putative lipoprotein	NA	NA	NA	NA
VEG64687.1\|1849765_1850257_-	serine O-acetyltransferase	A0A2H4J5A8	uncultured_Caudovirales_phage	6.3e-06	27.6
1850574:1850589	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1929861 : 1997285

Staphylococcus_virus(47.06%)

tail,portal,capsid,transposase,holin,lysis,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG64769.1\|1929861_1931340_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.6e-73	48.2
VEG64770.1\|1931357_1931924_-	putative phosphoribosylglycinamide formyltransferase PurN	M4QRX9	Synechococcus_phage	1.1e-30	39.7
VEG64771.1\|1931920_1932958_-	phosphoribosylaminoimidazole synthetase	Q58MH8	Prochlorococcus_phage	2.2e-69	43.5
VEG64772.1\|1932962_1934384_-	putative amidophosphoribosyltransferase PurF	A0A0M3SGR2	Mollivirus	4.3e-47	31.0
VEG64773.1\|1934362_1936552_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	1.3e-138	39.5
VEG64774.1\|1936544_1937216_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
VEG64775.1\|1937215_1937482_-	putative phosphoribosylformylglycinamidine synthase, PurS component	A0A1B1IU82	uncultured_Mediterranean_phage	2.9e-05	35.0
VEG64776.1\|1937481_1938186_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	2.1e-50	46.4
VEG64777.1\|1938185_1939313_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
VEG64778.1\|1939299_1939782_-	phosphoribosylaminoimidazole carboxylase catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	3.1e-21	44.0
VEG64779.1\|1939990_1940848_+	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	8.4e-38	38.8
VEG64780.1\|1940964_1942041_-	putative peptidase	NA	NA	NA	NA
VEG64781.1\|1942259_1943576_+\|transposase	transposase (fragment 2)	A0A1S5SBP9	Streptococcus_phage	8.0e-48	32.2
VEG64782.1\|1943651_1944800_-	putative flavohemoprotein	NA	NA	NA	NA
VEG64783.1\|1945185_1945503_+	putative secreted protein	NA	NA	NA	NA
VEG64784.1\|1945803_1946916_+	putative quinol oxidase polypeptide II QoxA	NA	NA	NA	NA
VEG64785.1\|1946915_1948898_+	quinol oxidase polypeptide I QoxB	NA	NA	NA	NA
VEG64786.1\|1948890_1949493_+	putative quinol oxidase polypeptide III	NA	NA	NA	NA
VEG64787.1\|1949489_1949780_+	putative quinol oxidase polypeptide IV	NA	NA	NA	NA
VEG64788.1\|1949916_1950825_+	ribonucleoside hydrolase RihC	NA	NA	NA	NA
VEG64789.1\|1950905_1951658_+	putative lactose phosphotransferase system repressor lacR	NA	NA	NA	NA
VEG64790.1\|1951850_1952282_+	putative galactose-6-phosphate isomerase LacA subunit	NA	NA	NA	NA
VEG64791.1\|1952300_1952816_+	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA
VEG64792.1\|1952815_1953763_+	putative tagatose-6-phosphate kinase	NA	NA	NA	NA
VEG64793.1\|1953759_1954047_+	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA
VEG64794.1\|1954000_1954696_+	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA
VEG64795.1\|1954831_1956121_+	arsenic efflux pump protein	A0A2H4PQU3	Staphylococcus_phage	2.6e-168	70.6
VEG64796.1\|1956136_1956538_+	arsenate reductase	A0A2H4PQT9	Staphylococcus_phage	8.7e-46	66.7
VEG64797.1\|1956579_1957986_-	6-phospho-beta-galactosidase	NA	NA	NA	NA
VEG64798.1\|1958119_1958923_-	putative PTS system lactose-specific component IIBC	NA	NA	NA	NA
VEG64799.1\|1959266_1960733_-	N-acetylmuramoyl-L-alanine amidase family protein	U3PDY3	Staphylococcus_phage	6.8e-205	77.7
VEG64800.1\|1960729_1961206_-\|holin	holin, phage phi LC3 family	U3PJ27	Staphylococcus_phage	1.4e-66	79.9
VEG64801.1\|1961253_1961652_-	hypothetical phage membrane protein	A0A2H4JCM1	uncultured_Caudovirales_phage	1.5e-58	87.1
VEG64802.1\|1961638_1962061_-	hypothetical phage membrane protein	A0A2H4JID2	uncultured_Caudovirales_phage	3.2e-59	77.1
VEG64803.1\|1962134_1962302_-	Uncharacterised protein	NA	NA	NA	NA
VEG64804.1\|1962301_1963090_-	Uncharacterised protein	A0A2H4JE36	uncultured_Caudovirales_phage	2.5e-52	41.5
VEG64805.1\|1963127_1963268_-	phage protein	A0A060AB44	Staphylococcus_phage	6.8e-06	95.5
VEG64806.1\|1963269_1963770_-	Uncharacterised protein	A0A2H4J9L3	uncultured_Caudovirales_phage	3.0e-40	77.7
VEG64807.1\|1963781_1965122_-\|tail	phage tail fiber protein	A0A2H4J9N1	uncultured_Caudovirales_phage	5.8e-86	77.3
VEG64808.1\|1965134_1967054_-	phage-related cell wall hydrolase	Q4ZCC7	Staphylococcus_virus	0.0e+00	98.9
VEG64809.1\|1967103_1967493_-	Uncharacterised protein	Q4ZCC9	Staphylococcus_virus	6.0e-52	100.0
VEG64810.1\|1967485_1967929_-	Uncharacterised protein	Q4ZCD0	Staphylococcus_virus	7.0e-73	90.5
VEG64811.1\|1967940_1968075_-	phage uncharacterized protein, XkdX family	NA	NA	NA	NA
VEG64812.1\|1968064_1968439_-	Uncharacterised protein	NA	NA	NA	NA
VEG64813.1\|1968449_1969886_-	phage protein	A0A2H4JH16	uncultured_Caudovirales_phage	2.5e-47	43.2
VEG64814.1\|1969882_1971961_-	Putative major teichoic acid biosynthesis protein C	A0A2H4JFY2	uncultured_Caudovirales_phage	7.0e-139	61.1
VEG64815.1\|1971963_1973466_-	phage minor structural protein	Q4ZCD5	Staphylococcus_virus	7.2e-279	99.0
VEG64816.1\|1973474_1974389_-\|tail	phage tail protein	Q4ZCD7	Staphylococcus_virus	2.5e-173	98.4
VEG64817.1\|1974407_1977413_-	phage tape measure protein	Q4ZCD8	Staphylococcus_virus	0.0e+00	93.5
VEG64818.1\|1977423_1977699_-	phage protein	Q4ZCD9	Staphylococcus_virus	5.7e-41	98.9
VEG64819.1\|1977764_1978262_-	phage family protein	Q4ZCE0	Staphylococcus_virus	4.9e-91	100.0
VEG64820.1\|1978319_1978883_-\|tail	putative tail protein	Q4ZCE1	Staphylococcus_virus	1.4e-97	99.5
VEG64821.1\|1978886_1979309_-	phage protein	Q4ZCE2	Staphylococcus_virus	1.9e-75	97.9
VEG64822.1\|1979319_1979733_-	phage protein	Q4ZCE4	Staphylococcus_virus	6.8e-70	89.1
VEG64823.1\|1979719_1980055_-\|head,tail	putative phage head-tail adaptor protein	Q4ZCE5	Staphylococcus_virus	9.7e-59	96.4
VEG64824.1\|1980056_1980353_-	putative phage DNA-packaging protein	Q4ZCE6	Staphylococcus_virus	4.6e-52	100.0
VEG64825.1\|1980352_1980634_-	Rho termination factor domain-containing protein	Q4ZCE7	Staphylococcus_virus	1.1e-44	100.0
VEG64826.1\|1980646_1981471_-\|capsid	putative phage major capsid protein	Q4ZCE8	Staphylococcus_virus	6.6e-149	100.0
VEG64827.1\|1981489_1982083_-	phage minor structural GP20	Q4ZCE9	Staphylococcus_virus	2.7e-75	98.5
VEG64828.1\|1982209_1983154_-\|head	phage minor head protein	Q4ZCF0	Staphylococcus_virus	4.1e-171	97.5
VEG64829.1\|1983125_1984487_-\|portal	SPP1 family phage portal protein	Q4ZCF1	Staphylococcus_virus	9.5e-254	93.2
VEG64830.1\|1984537_1985794_-\|terminase	phage terminase large subunit	Q4ZCF2	Staphylococcus_virus	8.9e-222	90.4
VEG64831.1\|1985790_1986222_-\|terminase	Phage terminase, small subunit	Q4ZCF3	Staphylococcus_virus	2.2e-63	85.8
VEG64832.1\|1986310_1986580_-	Uncharacterised protein	NA	NA	NA	NA
VEG64833.1\|1986602_1986824_-	Uncharacterised protein	NA	NA	NA	NA
VEG64834.1\|1987070_1987475_-	RNA polymerase sigma factor, sigma-70 family	A0A1J0MFD1	Staphylococcus_phage	1.9e-40	62.4
VEG64835.1\|1987490_1987628_-	Uncharacterised protein	NA	NA	NA	NA
VEG64836.1\|1987790_1988045_-	Uncharacterised protein	NA	NA	NA	NA
VEG64837.1\|1988023_1988365_-	Uncharacterised protein	NA	NA	NA	NA
VEG64838.1\|1988409_1988583_-	phage protein	A1BUB4	Staphylococcus_virus	1.9e-05	48.8
VEG64839.1\|1988627_1988927_-	phage DNA binding protein	U3PBR4	Staphylococcus_phage	1.1e-42	86.9
VEG64840.1\|1988919_1989141_-	Uncharacterised protein	NA	NA	NA	NA
VEG64841.1\|1989141_1989384_-	Uncharacterised protein	NA	NA	NA	NA
VEG64842.1\|1989380_1989575_-	Uncharacterised protein	Q4ZC85	Staphylococcus_virus	4.2e-22	76.2
VEG64843.1\|1989564_1989969_-	yopX family protein	A0A141E233	Streptococcus_phage	8.0e-15	34.2
VEG64844.1\|1989965_1990376_-	putative phage PVL protein	NA	NA	NA	NA
VEG64845.1\|1990362_1990557_-	Uncharacterised protein	Q4ZC88	Staphylococcus_virus	2.8e-10	56.7
VEG64846.1\|1990543_1991266_-	Uncharacterised protein	NA	NA	NA	NA
VEG64847.1\|1991288_1991531_-	Uncharacterised protein	Q4ZC89	Staphylococcus_virus	4.0e-06	38.3
VEG64848.1\|1991521_1992112_-	Uncharacterised protein	NA	NA	NA	NA
VEG64849.1\|1992117_1992294_-	Uncharacterised protein	NA	NA	NA	NA
VEG64850.1\|1992290_1992992_-	putative PTS system lactose-specific component IIBC	A0A2H4J5E6	uncultured_Caudovirales_phage	7.3e-24	73.6
VEG64851.1\|1993007_1993337_-	putative lactose-specific enzyme IIA	NA	NA	NA	NA
VEG64852.1\|1993637_1994252_-	lipoprotein	NA	NA	NA	NA
VEG64853.1\|1994441_1995569_-\|lysis	autolysis and methicillin resistant-like protein	NA	NA	NA	NA
VEG64854.1\|1995632_1997285_-	putative phosphomannomutase	A0A1X9I671	Streptococcus_phage	4.9e-95	37.1

DBSCAN-SWA_6

2234836 : 2243693

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG65082.1\|2234836_2235793_-	FecCD transport family protein SstA	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-133	77.8
VEG65083.1\|2236094_2237069_-	ribonucleotide-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	2.7e-173	93.2
VEG65084.1\|2237210_2239316_-	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	87.2
VEG65085.1\|2239287_2239815_-	ribonucleotide reductase stimulatory protein	A0A2H4J545	uncultured_Caudovirales_phage	1.6e-44	68.5
VEG65086.1\|2240559_2241447_+	putative permease	NA	NA	NA	NA
VEG65087.1\|2241449_2241953_+	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	6.0e-52	65.0
VEG65088.1\|2242172_2243693_+	putative di-/tripeptide transporter	A0A0P0IY73	Acinetobacter_phage	2.2e-73	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134360

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection