CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134365	Cardiobacterium hominis strain NCTC10426 genome assembly, chromosome: 1	4 crisprs	csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx16,csx1,csa3,cas3,cas1,cas4,cas7,cas8c,cas5,WYL,cas2,DinG,DEDDh,PD-DExK	2	19	6	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134365_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134365_1

203305-204248

Orphan

Consensus_repeat	Method
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	PILER-CR
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	CRISPRCasFinder
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	CRT

13 spacers

The CRISPR arrays of LR134365_1

>merge|LR134365|1|203305-204248|PILER-CR,CRISPRCasFinder,CRT
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGACACCGCTGACATCACTTCGGTCAAATCAACATAACATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGACTTGCGCAGGTCGACCACGTCCCGTCGGACATCGGATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGACTCAGTGAACTTCTTTATAGTAAGCCCAATATTCATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGACGCTAAAGCTGCAATTGATAGCAGTGCGAAAATTATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGACGTAACCGGCTGCGCTTTGCAAGACGCGCAGATATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGACTTCTCAAGAACATCATCAGCATCCGCGATATAAATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGACAAACACCGGGCGGGGTGTATTCTCGGCAAAATCATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGACGATTTGTTGGCGTTCTTCGATCAGTTCCATCAATTAAAAAACCGTCCCTGCTCCAAAGGGATTGCGACCCATGGGTTTTCTCCTGTTTTAGAAAAAGAAAAATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGACTCGCATTCCTCGCGCTGCGCGATGCGTACACCTGATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGACGACGACTGCGAAAAACGTTATATAAATCTGCATATATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGACCCCTGTGGGCTTGCCCATTGATTTGAGGTATCGATTGAAAAACCGTCCCTGCTCCAAAGGGATTACGACCTCGCCGTCCCGACATGGGCGGCTTCTTGCTTGGATTTTGGATTAGAAACCCGTCCCTGCTCCAAAGGGTTTTCCAT

>LR134365|1|1|203305-204102|PILER-CR
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	ACCGCTGACATCACTTCGGTCAAATCAACATAAC
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TTGCGCAGGTCGACCACGTCCCGTCGGACATCGG
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TCAGTGAACTTCTTTATAGTAAGCCCAATATTC
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GCTAAAGCTGCAATTGATAGCAGTGCGAAAATT
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GTAACCGGCTGCGCTTTGCAAGACGCGCAGAT
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TTCTCAAGAACATCATCAGCATCCGCGATATAA
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	AAACACCGGGCGGGGTGTATTCTCGGCAAAATC
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GATTTGTTGGCGTTCTTCGATCAGTTCCATCA
ATTAAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	CCATGGGTTTTCTCCTGTTTTAGAAAAAGAAAA
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TCGCATTCCTCGCGCTGCGCGATGCGTACACCTG
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GACGACTGCGAAAAACGTTATATAAATCTGCATAT
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC

>LR134365|1|1|203305-204248|CRISPRCasFinder
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	ACCGCTGACATCACTTCGGTCAAATCAACATAAC
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TTGCGCAGGTCGACCACGTCCCGTCGGACATCGG
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TCAGTGAACTTCTTTATAGTAAGCCCAATATTC
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GCTAAAGCTGCAATTGATAGCAGTGCGAAAATT
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GTAACCGGCTGCGCTTTGCAAGACGCGCAGAT
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TTCTCAAGAACATCATCAGCATCCGCGATATAA
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	AAACACCGGGCGGGGTGTATTCTCGGCAAAATC
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GATTTGTTGGCGTTCTTCGATCAGTTCCATCA
ATTAAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	CCATGGGTTTTCTCCTGTTTTAGAAAAAGAAAA
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TCGCATTCCTCGCGCTGCGCGATGCGTACACCTG
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GACGACTGCGAAAAACGTTATATAAATCTGCATAT
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	CCCTGTGGGCTTGCCCATTGATTTGAGGTATCG
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTACGAC	CTCGCCGTCCCGACATGGGCGGCTTCTTGCTTGGATTTTGG
ATTAGAAACCCGTCCCTGCTCCAAAGGGTTTTCCAT

>LR134365|1|1|203305-204248|CRT
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	ACCGCTGACATCACTTCGGTCAAATCAACATAAC
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TTGCGCAGGTCGACCACGTCCCGTCGGACATCGG
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TCAGTGAACTTCTTTATAGTAAGCCCAATATTC
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GCTAAAGCTGCAATTGATAGCAGTGCGAAAATT
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GTAACCGGCTGCGCTTTGCAAGACGCGCAGAT
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TTCTCAAGAACATCATCAGCATCCGCGATATAA
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	AAACACCGGGCGGGGTGTATTCTCGGCAAAATC
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GATTTGTTGGCGTTCTTCGATCAGTTCCATCA
ATTAAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	CCATGGGTTTTCTCCTGTTTTAGAAAAAGAAAA
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	TCGCATTCCTCGCGCTGCGCGATGCGTACACCTG
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	GACGACTGCGAAAAACGTTATATAAATCTGCATAT
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC	CCCTGTGGGCTTGCCCATTGATTTGAGGTATCG
ATTGAAAAACCGTCCCTGCTCCAAAGGGATTACGAC	CTCGCCGTCCCGACATGGGCGGCTTCTTGCTTGGATTTTGG
ATTAGAAACCCGTCCCTGCTCCAAAGGGTTTTCCAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134365.1\|VEG76172.1\|211837_212656_-\|High-affinity-zinc-uptake-system-membrane-protein-znuB	unknown	unknown	gnl\|CDD\|181938
LR134365.1\|VEG76170.1\|211204_211408_-\|lipoprotein	unknown	unknown	gnl\|CDD\|182532
LR134365.1\|VEG76167.1\|208037_208541_-\|acid-resistance-membrane-protein	unknown	unknown	gnl\|CDD\|182308
LR134365.1\|VEG76171.1\|211517_211730_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134365.1\|VEG76165.1\|205137_206094_-\|Iron(III)-dicitrate-transport-system-permease-protein-fecD	unknown	unknown	gnl\|CDD\|182071
LR134365.1\|VEG76163.1\|202106_202937_+\|Pyridoxine-kinase	unknown	unknown	gnl\|CDD\|181269
LR134365.1\|VEG76166.1\|206090_207542_-\|Iron(III)-dicitrate-transport-system-permease-protein-fecC	unknown	unknown	gnl\|CDD\|183042
LR134365.1\|VEG76160.1\|199220_199559_-\|putative-alkylphosphonate-utilization-operon-protein-PhnA	unknown	unknown	gnl\|CDD\|225380
LR134365.1\|VEG76168.1\|208638_209400_-\|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG	unknown	unknown	gnl\|CDD\|235546
LR134365.1\|VEG76158.1\|197354_198275_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|366565
LR134365.1\|VEG76155.1\|194892_196089_-\|Tryptophan-synthase-beta-chain	unknown	unknown	gnl\|CDD\|235288
LR134365.1\|VEG76157.1\|196725_197154_-\|Pyridoxine-kinase	unknown	unknown	gnl\|CDD\|181269
LR134365.1\|VEG76161.1\|199667_200693_+\|Fructose-1,6-bisphosphatase-class-1	unknown	unknown	gnl\|CDD\|236458
LR134365.1\|VEG76162.1\|200877_201729_+\|Dipeptidyl-peptidase-6	unknown	unknown	gnl\|CDD\|366353
LR134365.1\|VEG76173.1\|212712_213420_-\|Zinc-import-ATP-binding-protein-ZnuC	unknown	unknown	gnl\|CDD\|181939
LR134365.1\|VEG76159.1\|198453_199218_-\|Predicted-enzyme-with-a-TIM-barrel-fold	unknown	unknown	gnl\|CDD\|143483
LR134365.1\|VEG76156.1\|196069_196711_-\|N-(5'-phosphoribosyl)anthranilate-isomerase	unknown	unknown	gnl\|CDD\|234923
LR134365.1\|VEG76169.1\|209504_211094_+\|Peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
LR134365.1\|VEG76154.1\|194003_194885_-\|Tryptophan-synthase-alpha-chain	unknown	unknown	gnl\|CDD\|237285
LR134365.1\|VEG76164.1\|204331_205138_-\|Probable-siderophore-transport-system-ATP-binding-protein-YusV	unknown	unknown	gnl\|CDD\|183044

Protein	Function_ID	Function_description	E-value
LR134365.1\|VEG76172.1\|211837_212656_-\|High-affinity-zinc-uptake-system-membrane-protein-znuB	gnl\|CDD\|181938	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB.	2.24097e-50
LR134365.1\|VEG76170.1\|211204_211408_-\|lipoprotein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	0.00259899
LR134365.1\|VEG76167.1\|208037_208541_-\|acid-resistance-membrane-protein	gnl\|CDD\|182308	PRK10209, PRK10209, HdeD family acid-resistance protein.	2.31874e-09
LR134365.1\|VEG76165.1\|205137_206094_-\|Iron(III)-dicitrate-transport-system-permease-protein-fecD	gnl\|CDD\|182071	PRK09777, fecD, Fe(3+) dicitrate ABC transporter permease subunit FecD.	2.31995e-106
LR134365.1\|VEG76163.1\|202106_202937_+\|Pyridoxine-kinase	gnl\|CDD\|181269	PRK08176, pdxK, pyridoxine/pyridoxal/pyridoxamine kinase.	3.60805e-125
LR134365.1\|VEG76166.1\|206090_207542_-\|Iron(III)-dicitrate-transport-system-permease-protein-fecC	gnl\|CDD\|183042	PRK11228, fecC, iron-dicitrate ABC transporter permease FecC.	1.50132e-51
LR134365.1\|VEG76160.1\|199220_199559_-\|putative-alkylphosphonate-utilization-operon-protein-PhnA	gnl\|CDD\|225380	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism].	3.15074e-50
LR134365.1\|VEG76168.1\|208638_209400_-\|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	3.33411e-90
LR134365.1\|VEG76158.1\|197354_198275_+\|Uncharacterised-protein	gnl\|CDD\|366565	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B. Bacterial lipoproteins represent a large group of specialized membrane proteins that perform a variety of functions including maintenance and stabilization of the cell envelope, protein targeting and transit to the outer membrane, membrane biogenesis, and cell adherence. Pathogenic Gram-negative bacteria within the Neisseriaceae and Pasteurellaceae families rely on a specialized uptake system, characterized by an essential surface receptor complex that acquires iron from host transferrin (Tf) and transports the iron across the outer membrane. They have an iron uptake system composed of surface exposed lipoprotein, Tf-binding protein B (TbpB), and an integral outer-membrane protein, Tf-binding protein A (TbpA), that together function to extract iron from the host iron binding glycoprotein (Tf). TbpB is a bilobed (N and C lobe) lipid-anchored protein with each lobe consisting of an eight-stranded beta barrel flanked by a handle domain made up of four (N lobe) or eight (C lobe) beta strands. TbpB extends from the outer membrane surface by virtue of an N-terminal peptide region that is anchored to the outer membrane by fatty acyl chains on the N-terminal cysteine and is involved in the initial capture of iron-loaded Tf. This domain family is found in C and N lobe eight stranded beta barrel region of TbpB proteins. The eight-stranded barrel domains in N and C lobe draw comparisons to eight-stranded beta barrel outer-membrane protein W (OmpW). However, the barrel domains of TbpB have the hydrophobic residues line the inner surface of the beta barrels to create a stable hydrophobic core.	1.69348e-07
LR134365.1\|VEG76155.1\|194892_196089_-\|Tryptophan-synthase-beta-chain	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
LR134365.1\|VEG76157.1\|196725_197154_-\|Pyridoxine-kinase	gnl\|CDD\|181269	PRK08176, pdxK, pyridoxine/pyridoxal/pyridoxamine kinase.	4.08087e-43
LR134365.1\|VEG76161.1\|199667_200693_+\|Fructose-1,6-bisphosphatase-class-1	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	0
LR134365.1\|VEG76162.1\|200877_201729_+\|Dipeptidyl-peptidase-6	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	6.16364e-13
LR134365.1\|VEG76173.1\|212712_213420_-\|Zinc-import-ATP-binding-protein-ZnuC	gnl\|CDD\|181939	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.	4.4858e-81
LR134365.1\|VEG76159.1\|198453_199218_-\|Predicted-enzyme-with-a-TIM-barrel-fold	gnl\|CDD\|143483	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.	2.33636e-115
LR134365.1\|VEG76156.1\|196069_196711_-\|N-(5'-phosphoribosyl)anthranilate-isomerase	gnl\|CDD\|234923	PRK01222, PRK01222, phosphoribosylanthranilate isomerase.	2.42718e-93
LR134365.1\|VEG76169.1\|209504_211094_+\|Peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
LR134365.1\|VEG76154.1\|194003_194885_-\|Tryptophan-synthase-alpha-chain	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	2.62622e-110
LR134365.1\|VEG76164.1\|204331_205138_-\|Probable-siderophore-transport-system-ATP-binding-protein-YusV	gnl\|CDD\|183044	PRK11231, fecE, Fe(3+) dicitrate ABC transporter ATP-binding protein FecE.	8.63009e-149

>LR134365.1|VEG76163.1|202106_202937_+|Pyridoxine-kinase
MTLDYAARNPLPLDVISIQSQVVYGTVGNNAALPTLARHGIRATAVPTVLYSNTPHYDTIHGGAIPADWFAGYLKDLERRRALESTRAIILGYLGSAEQADILADWLDGEKARRPQLHISIDPVLGDHDSGLYVRPELAASYRDRLVACADLITPNHYELGYLSQRPTDDYDATVAAARSLLGARLKTVIVTSSPGAKDGEIANLIVTAEHVTQSSHPRIDSDVKGTGDAFHAALTAALLNGAALADAVQSAGDWVVAALRYTAAENSGELRFPPQ
>LR134365.1|VEG76162.1|200877_201729_+|Dipeptidyl-peptidase-6
MYDIEVQSENDSRLYPAGETQGYARIRQPETWVHAAPDATSARLSQYTYGEPLRILDARDGWLHTQSLRDHYSGWIDAAATEPHNSEPHWTHTTIAVAPVTAAPDLKSTWLTALPPDACLEIIGEDGDYLQLHDGGWLHRRHTSLPHELTDPVSAARSQIGRSYVWGGRGMAGLDCSALAQWSYRRAGCNIPRDSDLQEKYLRAHHKTIKLEDLARSDLLYLPGHVMLANDPYTVIHASGHHMHVVAENLADALARYRDTMGDKYRLNIYRWDAKKPFVHVFD
>LR134365.1|VEG76161.1|199667_200693_+|Fructose-1,6-bisphosphatase-class-1
MQSLGEFIVMRQAEYPQAKGELSGILAAIRLAAKVLHRDINRAGLVNDILGEAGSENVQGEAQKKLDIFAHEKIKAAFLARDNVAGFASEEEEDFIAFQSEKNRNAKYIVLTDPLDGSSNIDVNVAVGTIFSIYRRVTPIGTPVTLEDFLQPGNRQVAAGYVVYGSSTMLVYTTGNGVNGFTYDPSLGIFCLSHENIRIPDDGTMYSINEGQYLKFPLGVKKYIKYCQEADKDTKRPYTSRYIGSLVADFHRNMLKGGIYMYPSGSSYPNGKLRLNYEANPMAFLAEQAGGSATDGYRRILDIQPTSLHQRVPLYVGSKNMVGKVMEMIRDNPDPERKPAQ
>LR134365.1|VEG76160.1|199220_199559_-|putative-alkylphosphonate-utilization-operon-protein-PhnA
MSELHCPKCACDYCYNDGEMNICPECAYEWRDGDTGAGDDTPAVLDANGVALADGDSVVLIKALKPKGSSQTIKQGTKVKNIRLVPGGDHNIDCKIEGFGGMMLKSEFVKKA
>LR134365.1|VEG76159.1|198453_199218_-|Predicted-enzyme-with-a-TIM-barrel-fold
MTAPLYPQATTAAEITANLATIQARINAACAACGREPDEVRLLPVSKTVPAERLHFAYDAGIRLLGENKVQEAYDKWQALADLDGLNWAVIGHLQSNKVKYVARFAAEFQALDSLDIAESLDRRLQQEGRSLDVFVQVNTSDEPQKYGMTPDAADAFIRALPQYNSLRLRGLMTLALFSDDHAAVRRCFVRLRELRDRLRETNPAIAELSMGMSGDFELAIAEGATTVRVGQAIFGARKTPDSEYWPGLAPENR
>LR134365.1|VEG76158.1|197354_198275_+|Uncharacterised-protein
MKKHFVLSALTLALLSACGGSNGGNSDGAVLPPADINGSQTARSSNPSTQQTGNAPQQPGGNTQQAGNTQQNPQQPGNNNQNNQPNNSALTITPRSGELTGFTYTLTTGILSTPVSRNIRDQSNLSVGQIKLPTFAASEHKGGLLIFNNINGKEDLSYNSFQVSDNSYRYIQFGNFNFDQNDERMVFVRGNETTQMPGGGSATYSGDSILNFHNKDEQYLRTETGTMSARADFAKGTLDLSVKTPSHSGSITEAHINGNGFFGADEKKTVIGGNFAGPLAEEIFGSYSHIDQDGSTVWGGFGGKKQ
>LR134365.1|VEG76157.1|196725_197154_-|Pyridoxine-kinase
MTHTLDYAARNPLPLDVISIQSQVVYGTVGNNAALPTLAAHGLRAAAVPTVLFSNTPHYDTIHGGAIPADWFAGYLADLDRRLQQEGRSLDVFIQINTSDEPQKYGMTPDAAAPCRSGANILYGNPRKPHRALRGLPYIFQP
>LR134365.1|VEG76156.1|196069_196711_-|N-(5'-phosphoribosyl)anthranilate-isomerase
MHTRIKICGLTRPDDVKAAIDCGADALGFVFYERSPRHVSLAQAERLLTLLPPLVSAVGLFVDASAEAVRATLAAVPLDQLQFHGAESADFCRQFGRRWFKAVPMRDLPDAASAAAWLAAYPDSSAFLFDAFGRAQMGGSGEVFDWSCLPPTDRPVILAGGLHAGNVGDAIRRFRPFAVDVSSGVESAPGVKSSAKMRAFITAVRNAYEPDSP
>LR134365.1|VEG76155.1|194892_196089_-|Tryptophan-synthase-beta-chain
MNPTLPDARGYFGRFGGQFVAETLMQAVLQLQDAYRTAQHDPAFWAQFRAELADYVGRPSPLYFAKRLTEKAGGAEIWLKREDLNHTGAHKINNTIGQALLAERLGKPRLIAETGAGQHGVASATVAARLGLECVIYMGADDVQRQAPNVYRMKLLGATVVPVSAGSRTLKDALNEALRDWAANVDNTFYIIGTAAGPHPYPELVRDFQKVIGEEAKAQAQAHFGALPDAVVACVGGGSNAIGLFYPFYDDPVALYGVEAGGHGVETGAHAAPLTANAPVGVLHGNRTYVMSNDDGQIAETHSVSAGLDYPGVGPEHAWLKESGRAQYVAINDDEALAAFHDLCRLEGIIPALESAHAVAYGLKLARELGRGKRIIVNLSGRGDKDINTIAARDGITL
>LR134365.1|VEG76154.1|194003_194885_-|Tryptophan-synthase-alpha-chain
MIRFFERLFAPKAQSHEAQPAQKRERLAERFAALKAQGRKALIPYISAGDPDPAQTAAVLHALVAGGADALELGIPFSDPAADGETIQQANERALARGVTFAQTLAIVREFRATDHDTPLILMGYLNSFERAGFACAMADIAAAGGDAVILVDCPVEALADYDADLKASGITPIMLVAPTTTADRRQHILAHAGGFLYFVSLRGVTGTQEAQADAIAADIRTLKNETDVPICIGFGIRDGETARQMAELADGVVIGSALVARLHAAFDAKQPLGDTATAFIRDIRAHLDKEPT
>LR134365.1|VEG76164.1|204331_205138_-|Probable-siderophore-transport-system-ATP-binding-protein-YusV
MALHIHNLHNGYGDAKILRGITATLPAGKITALIGPNGCGKSTLLKTLARLLPPQSGDITLDGEAIYHMSPRRFARRLSLLPQHHMVPEGINVRTLVGYGRSPYLNLWGRLGKADLDIVARVMAATHTDTLADKRVDELSGGQQQRAFLAMTLAQETPYLLLDEPTTYLDLNHQIALMDMMRAQQEKGTTVITVLHDLNQAARYCDHLIVLKAGQLVAEGSPAEVLTPALLADVFAVNAAPYTCPVSGKPMCIVKESALEAQAEAAGR
>LR134365.1|VEG76165.1|205137_206094_-|Iron(III)-dicitrate-transport-system-permease-protein-fecD
MNHPKRQLLILGALVILAFYGALAFGTKTLTPAEIWHGFLARDFDIWQYRLPRAILAIYIGAALALSGTIIQGIIHNPLASPDILGINHGASLAAVLTLTFISNLPLWALPLAACLGAAAAFAILLALTRKNTGPLQMALIGVALSALYAAIADYLLLTWPQNLNTAMVWLTGSLWNRSWVFVQIAVPVLTLLLPLALFASKTFDLLTLGDQKAATLGVSVRAQRNLLLALAVVLAAVAVSVAGPITFLGLVAPHLARKLVGGRHIVLLPAALLTGALILQVSDIAVRSIRPPLELPAGIFTALIGAPYFFYLLRRKL
>LR134365.1|VEG76166.1|206090_207542_-|Iron(III)-dicitrate-transport-system-permease-protein-fecC
MPTALRRWLAAAAIYTDRRAITLFLLGIAAGLPFLLIFSSLSIWLNEAGVARDTVTRFSWAALAYSFKFVWSPLADALPLPLLTRTLGRRRAWLLLAQCGVIAAICLMALIDPARPGALPQMALAAVLLGFSSATQDIVIDAYRIEIAPHDAAMQAATAASYTAGYRCGMILSGAGALLLAGFFGSTALVYHYPAWRSTYLIMAALMGIGIATTLLVREPPAVARTAPRPPGDNLRLLALFAVTVAALIAAYRALDALPAANGGILALLRETLRLAGGLAAAVLAGMLLVRTGLVRRELAWQTWLEPLADFFRRYGRAALLLDEAQAGSVMRWLAGSLSNLTWSQLHQFWPWVLLPILPLLWLMPKLNLLRLSDDAAQSLGLSVRQLRGMVNVIVLLWVGASVAITGPIALIGLLVPHLAKFWIGYDLRLAVPMSALLGALLLVAADVLAIHLAHPAQLPAGAVLAIIGAPCFVLLAKRRSDT
>LR134365.1|VEG76167.1|208037_208541_-|acid-resistance-membrane-protein
MKNTTLCYLAGGLSLLGGILALANPFAASLTATVLAGWSFIAVGTLMLIAANHPLGFHLAVFLLGLLALALGVHLVFDPLRGVVSLTAAVGSLLLVAGILRISAALRLYGYFRGTLLVSGLLSFVLAVLIFADFPQSANVILGQFLAIELLSNGISLIALGMARSRY
>LR134365.1|VEG76168.1|208638_209400_-|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG
MELFSLQGQTALVTGGAKGIGKGIATVLRRAGAEVIIADIDREHGEATAAVLGGHYQPLDVRVQDSCRAAIAAAVARFGALDILCSNTGIFPQKTLAEMNEADWDETHGINLKGTFFMVQAAAEAMRPRGYGRIVITSSITGPVTGFPGWSHYGASKAGQLGFMRSAALEYARFGITINAVMPGNVLSEGLQAQGETYLAQMRAAIPTHTLGTPADIGYAACFLASREAAYITGQTIIIDGGQILPESAEALL
>LR134365.1|VEG76169.1|209504_211094_+|Peptide-chain-release-factor-3
MSDILSNDYRDRRTFAIISHPDAGKTTLTEKLLLFGGAIALAGTVKGRKAARHATSDWMKMEQERGISVTSSVMQFPYQGRVINLLDTPGHEDFSEDTYRTLTAVDSALMVIDCAKGVEERTIKLMEVCRLRDTPIFTFINKLDREGREPMSLLDEVEDVLKIRCAPVTWPIGMGRTLRGVYHLLEDKVYFYEPGKGALVNNGEEVEGLDNPRLDELLPDSIAAFRDEIELLREAGNPFDHDAYLRGELTPVYFGSAIGNFGVREMLNGFARYAPPPRARATTARTVAPEETKFSGFVFKIQANMDPKHRDRIAFMRINSGTFTPGMKLRQVRLARDVKIPDALTFLAAEREHIDTAVAGDIIGIHNHGTIRIGDTFTEGEELQFTGIPDFAPELFRRVRLKDPLKMKALLKGLEQLCEEGATQFFKPLIGNDLILGAVGVLQFDVVKERLKSEYNVDCQFEGVNVATARWVEAPDDKALKAFTDKNQANLAHDHYGQLVYVAPSRVNLQLTQERHPDIRFAATRDHLA
>LR134365.1|VEG76170.1|211204_211408_-|lipoprotein
MKSVIGKAILLLALGASLGACNSLTPAQRNTAIGAAVGGAAGSMIGGDTGAILGGAALGGVIGSQVR
>LR134365.1|VEG76171.1|211517_211730_-|Uncharacterised-protein
MQKTTLLLLAFAAALTACDDKPKTAPAQQSSAREDNPLLKYQDETVNKAKKQIDAGVQQTQQQLDAVDKQ
>LR134365.1|VEG76172.1|211837_212656_-|High-affinity-zinc-uptake-system-membrane-protein-znuB
MFFYQYILIPCLCALTTATAAAPIGALIGWRRLVYFGEALSHASLLGIALALWLGLPPAIGIWSITLLLVLLLYLIERSGRENPSNILGSLSHIALALGYLVMSQMENVRTDLLAYLFGDILATEAHDLVAIAIAAAVSLLALRVLWQPLILMTVSPAIAKTEYPASRRYDLVFLLLIGLFIGTTVQYFGLLLVIALLIIPANTANRLAKTPEQSAAIAALLAAMATILGFTLAFNANLPVSPAIIGVAGVLYFAVLIHTRAGKKPRTAAVK
>LR134365.1|VEG76173.1|212712_213420_-|Zinc-import-ATP-binding-protein-ZnuC
MSALITLSDIAFSANGRDILHDINFSISRDQILTIVGPNGAGKSTLLSLILGHNRPSRGTISRIKGLKTSFVPQKFHPPADLPITARRFVRDIPQAAKSLWLTRLNIAHLLDTPLQTLSGGETQRLLLARAMLRCPDLIVLDEPAAGIDPVALGDYYQTIRDWQRSERAAVLMVSHDLHLVMAASDHILCLNRHICCHGSPEAVASNPAFRHMLGEGRHLDAIGIYTHHHDHSHL

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Crispr_ID: LR134365_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134365_2

705490-705655

TypeI

Consensus_repeat	Method
CGTTTCAATTCGCGCTCCCGCATGGGGAGCGA	CRISPRCasFinder
GACCACAGCGTTTCAATTCGCGCTCCCGCATGGGGAGCGA	PILER-CR

2 spacers

cas1,cas4,cas7,cas8c

The CRISPR arrays of LR134365_2

>merge|LR134365|2|705490-705655|CRISPRCasFinder,PILER-CR
AATTTCAATTCGCGCTCCCGCGTGGGGAGCGACGCTGTGCGTGTTGTCATCGGTGAGAATGACCACCGCGTTTCAATTCGCGCTCCCGCATGGGGAGCGACGCACCGGCTTGCCTTGATCGACATAGACCACATCGTTTCAATTCGCGCTCCCGCATGGGGAGCGA

>LR134365|2|2|705490-705655|CRISPRCasFinder
AATTTCAATTCGCGCTCCCGCGTGGGGAGCGA	CGCTGTGCGTGTTGTCATCGGTGAGAATGACCACCG
CGTTTCAATTCGCGCTCCCGCATGGGGAGCGA	CGCACCGGCTTGCCTTGATCGACATAGACCACAT
CGTTTCAATTCGCGCTCCCGCATGGGGAGCGA

>LR134365|2|2|705492-705655|PILER-CR
TTTCAATTCGCGCTCCCGCGTGGGGAGCGACGCTGTGCGT	GTTGTCATCGGTGAGAATGACCACCGCG
TTTCAATTCGCGCTCCCGCATGGGGAGCGACGCACCGGCT	TGCCTTGATCGACATAGACCACATCG
TTTCAATTCGCGCTCCCGCATGGGGAGCGA

Protein	Signature genes	Signature genes Name	Protein_function
LR134365.1\|VEG76609.1\|702490_703786_+\|Probable-periplasmic-serine-endoprotease-DegP-like-precursor	unknown	unknown	gnl\|CDD\|379142
LR134365.1\|VEG76608.1\|701297_702494_+\|Tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
LR134365.1\|VEG76612.1\|705671_706565_-\|D-malate-degradation-protein-R	unknown	unknown	gnl\|CDD\|176114
LR134365.1\|VEG76603.1\|697380_698226_+\|Penicillin-insensitive-murein-endopeptidase-precursor	unknown	unknown	gnl\|CDD\|236511
LR134365.1\|VEG76618.1\|712289_712892_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
LR134365.1\|VEG76617.1\|710529_712269_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134365.1\|VEG76615.1\|708284_709001_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134365.1\|VEG76614.1\|707066_707666_+\|Nitroreductase-family	unknown	unknown	gnl\|CDD\|226090
LR134365.1\|VEG76605.1\|699079_699385_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134365.1\|VEG76620.1\|713291_714155_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
LR134365.1\|VEG76619.1\|712916_713264_-\|Predicted-enzyme-related-to-lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|366361
LR134365.1\|VEG76607.1\|700129_701239_-\|Glycyl-glycine-endopeptidase-ALE-1-precursor	unknown	unknown	gnl\|CDD\|366703
LR134365.1\|VEG76606.1\|699651_700122_-\|Ribosomal-RNA-large-subunit-methyltransferase-H	unknown	unknown	gnl\|CDD\|234634
LR134365.1\|VEG76610.1\|703770_704670_+\|FHA-domain	unknown	unknown	gnl\|CDD\|379873
LR134365.1\|VEG76621.1\|714165_716016_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
LR134365.1\|VEG76613.1\|706665_707064_+\|DoxX	unknown	unknown	gnl\|CDD\|225168
LR134365.1\|VEG76602.1\|696278_697274_-\|Ornithine-carbamoyltransferase,-catabolic	unknown	unknown	gnl\|CDD\|179366
LR134365.1\|VEG76611.1\|704723_705194_+\|DNA-protection-during-starvation-protein-2	unknown	unknown	gnl\|CDD\|223854
LR134365.1\|VEG76616.1\|709438_710431_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
LR134365.1\|VEG76604.1\|698222_699062_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134365.1\|VEG76609.1\|702490_703786_+\|Probable-periplasmic-serine-endoprotease-DegP-like-precursor	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.35266e-24
LR134365.1\|VEG76608.1\|701297_702494_+\|Tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
LR134365.1\|VEG76612.1\|705671_706565_-\|D-malate-degradation-protein-R	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.02605e-71
LR134365.1\|VEG76603.1\|697380_698226_+\|Penicillin-insensitive-murein-endopeptidase-precursor	gnl\|CDD\|236511	PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed.	2.22138e-102
LR134365.1\|VEG76618.1\|712289_712892_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.36409e-39
LR134365.1\|VEG76614.1\|707066_707666_+\|Nitroreductase-family	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	6.62146e-95
LR134365.1\|VEG76607.1\|700129_701239_-\|Glycyl-glycine-endopeptidase-ALE-1-precursor	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.80209e-47
LR134365.1\|VEG76620.1\|713291_714155_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.10906e-153
LR134365.1\|VEG76619.1\|712916_713264_-\|Predicted-enzyme-related-to-lactoylglutathione-lyase	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	9.87639e-07
LR134365.1\|VEG76606.1\|699651_700122_-\|Ribosomal-RNA-large-subunit-methyltransferase-H	gnl\|CDD\|234634	PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional.	2.43148e-70
LR134365.1\|VEG76610.1\|703770_704670_+\|FHA-domain	gnl\|CDD\|379873	pfam16697, Yop-YscD_cpl, Inner membrane component of T3SS, cytoplasmic domain. Yop-YscD-cpl is the cytoplasmic domain of Yop proteins like YscD from Proteobacteria. YscD forms part of the inner membrane component of the bacterial type III secretion injectosome apparatus.	2.12663e-07
LR134365.1\|VEG76621.1\|714165_716016_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
LR134365.1\|VEG76613.1\|706665_707064_+\|DoxX	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.13118e-14
LR134365.1\|VEG76602.1\|696278_697274_-\|Ornithine-carbamoyltransferase,-catabolic	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
LR134365.1\|VEG76611.1\|704723_705194_+\|DNA-protection-during-starvation-protein-2	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.20127e-69
LR134365.1\|VEG76616.1\|709438_710431_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0

>LR134365.1|VEG76611.1|704723_705194_+|DNA-protection-during-starvation-protein-2
MSINIGMSEAQRKTIAEGLAKVLADSYTLYLKTHKFHWNVEGPMFRTLHLMFEEQYTELATAVDEIAERIRALGFPAPGSYSEFAALTSIKECNGKTDALTMIQELVDGQETVVRTCRAFFPAVDEANDEATADLLTTRMQTHEKTAWMLRALLEK
>LR134365.1|VEG76610.1|703770_704670_+|FHA-domain
MATELTVENQDNIYRVHTYPVRIGRAKDNDIIVKAPFVADYHAVIEQGAQGLTIRSLEQSHANGERIPTTRPLTNNTLLQIGTATLKLWLDSGKPMPLAHKQRRWWPLFTHPVAVTAWFLAAIFLTMWQGYLDSPQSYIVDYNRLITAVIILLGLTWITHSMIQPLARRYLILPVLGLISAYSTLSDLLTAAADWYSFQFNSTGASTAATILGFAGFLALYRAFLRDHIPLAGRILWRATALTLLPTLLLVTYGYLRDHDFYSQRPGSYPVYPNKLQSSVLLDGQIKPIKNFFSIDKNE
>LR134365.1|VEG76609.1|702490_703786_+|Probable-periplasmic-serine-endoprotease-DegP-like-precursor
MRKLALLCALSAGGALAQPVLPAQNENGEPAAVPFSVNALFASYKPSIYQVRTINAATGQKTSIGSGFVIGDGKMIATNYHVIADAVNKEKHDIEYISTDDREGKLRLLAVDVVHDLAIVAADHELGKAFKLGGIPEQGEALYALGNPGDLGFIIVDGINNGILQKSARSRILFSGAINSGMSGGPTVNKSGEVVGINVESQGNDIGFLVPANHLADLLKQAEAGAVNINESIADQLIADNDKYYTPFFSGKWKTATIGHFTVPTESGGDLRCWDVSPEQQLEDLAVSESVICQSDRTTYISHDIQFGAMGFIYSNFYARDPILTSRFYHLYSQEYRLPYEHRSSRDFGDFACKADFVSIGGKPFKTTYCTQPSKKFIKNGEPVSDLYLIAAQIGEKQQGFTITMMLTGIQENLGKRVMAHLLEQITWQQN
>LR134365.1|VEG76608.1|701297_702494_+|Tyrosine--tRNA-ligase
MVLDEQLALFRRGAVDFIGEEELRAKLAAGKKLRVKLGMDPTAPDLHFGHTVVLNKLRQFQDAGHQVLFLIGDFTALIGDPSGKSATRPPLSPEQVLANAETYKEQVFKILDPAKTEVMFNSHWMGPMSSTDMIRLAAKYTVARILERDDFQKRYTEGRPIALHEFLYPLTQGYDSVAMEADVELGGTDQKFNLLVGRDLQREYGQSPQAIITMPILEGLDGVQKMSKSLGNYIGIFDPANEMFGKIMSISDELMWRWFTLLSFRSMDEIAALQAEVTAGRNPRDVKFELARELVARFHDEAAAAAAQEAFVNRFAKNEIPEDLEEFRIDAPDGALGIAHVLKAAGLVGSTSEGLRMVDGGAVKVDGERVASRDFKLERGFSGIVQAGKRRIVKVVLV
>LR134365.1|VEG76607.1|700129_701239_-|Glycyl-glycine-endopeptidase-ALE-1-precursor
MPQHPHNDRTQQRLLPWIALIGFLGVALYAILPADFWLPEYKSAHHTVTPPQAITADDFEDNDWEDEIAQQPPKLPPVTAPPKEIPGPPLSAKPSAQTADGGQFKKHYQTYRLPGDYWHNLQKSGLNPTLLAQLEPLQTRLENPALTHLELLYSDYYKDGKTDPKNSKIIAVRLNTARGSDSWYARHENQNTWYYDADGNAPEAAMDRIPLASYDHISSPFDPVRLHPITRIIRPHEGTDFKAAYGAPVRATGDGVVRFAGWQGGYGRVIIIDHANGYQTRYAHLSDINVETGAAVKRGQTIGNLGNSGRSTGSHLHYEVRINDIPHDPMTVDLPSTRPLAANYKDAWQYRCGQYEKEMNALAKNKTTR
>LR134365.1|VEG76606.1|699651_700122_-|Ribosomal-RNA-large-subunit-methyltransferase-H
MHIEIIAVGQKMPDWVNRGYADYADRLTGDLTLGLTEIPLQKRGSASQLAAAQNKEAAQIRSALHACDHIVTLDIPGREHSSESLAARLQHWQENHRQLALIIGGPEGIAPDIKALAHESWSLGKLTLPHPLVRIIVAEALYRAWSINRNHPYHRA
>LR134365.1|VEG76605.1|699079_699385_+|Uncharacterised-protein
MTETDPFARIRLPDSGEILEEHRFPLFEYTGLYQKLRVPAAGVQVESIVVSLEEAAGRDTQYLLNLVVASGYVAEDADLTFRENRAGGYLYTYFNIQPLET
>LR134365.1|VEG76604.1|698222_699062_+|Uncharacterized-protein-conserved-in-bacteria
MTELLTAEAFARELAETISRQFHVRVSIQLNEREPELTLLHVHLPQPLTLSLQGLYQHYYQHPEEREKLIAFELKRISEYNVQQTPADNPENILPQIKSAGWLQNLQKRIYARQPDKELKDLMIVQPYLADLFICYAYECDAGLRYLSPEEAEAMGYANPDLLRTRAVKNLRKRKNQSKFYGLEGGAYSIVLDGVYDVSLLLILDEILPPSWLHSAVIAAPSRGELLLVKDDSPANLQELQTLVEEVSHKTANPVSPHFYRWQDGQLRLYRTNNEENYH
>LR134365.1|VEG76603.1|697380_698226_+|Penicillin-insensitive-murein-endopeptidase-precursor
MKFLTLFLVLCATAALSKDPDKVNVWSMQRAPVGATPQAVGSAANGCQLGAQMLEAEGDGFISIRRWRNRFYSQPITLKLVRRVGQEVATMHGAKILIGDLSQPVGGEMPFGHSSHQNGLDVDIWFYAVPAGSQPDKEVEPPSMVDGAAGTLVPGLWQAAYRDALYAAATFPETNRIFVNPVIKAHLCDTESDTRWLHKIRPWIGHDSHFHVRLNCPPGSPECVTQAAIPPGDGCDADLYKWVADQSDAILNPKPPKPPKPKPIKTPPETCTALLAPERRP
>LR134365.1|VEG76602.1|696278_697274_-|Ornithine-carbamoyltransferase,-catabolic
MNYWKNRSLLKLADHPREAILDLLDRAAALKAAKKAGSETARLGGKNIALIFEKTSTRTRCAFEVACFDQGAHCSYLGPGSSQLGDKESVADTARVLGRLYDAIEYRGFAQSTVETLAAHAGVPVYNGLTEAWHPTQMLADLLTMREHSAKPLADIAYAYLGDARYNMGNSLLMAGALMGMDVRIIAPAALQPAAEHIAQARRLAEKSGARLTISDDPQHVAGVDYLHTDVWLSMGEDKNQWEARIQQLLPYRIDATRVAACNNPAVKIMHCLPAYHDRNTPAGADFYQKHGLDGIEISDDIFASAANIAFDQAENRMHTIKALLVATLTA
>LR134365.1|VEG76612.1|705671_706565_-|D-malate-degradation-protein-R
MDTLLSLKIFAQIVESGSFTRASEYLGISTAMASKHLSHLEKHLGIRLMQRNSRSLSLTAEGEVYYRQSIEALQLLDAAAAQAGSGRETPQGHLRLTAPIWCANPVFADWMREYRARYPEVSLDIILDNDMRDLIGEGIDLALRVSRAPIPSLVVRRLFEVRFALVASPAYIRRHGLPRTLEDAASHSAVLPSYADISRMDCRRGDESHTLHLHSALQSNSTVMLHQLLLAGSGIGYLPLWLAQDDLTAGRLVRLLPDWQLRSITLHAAYPDRRHLSAKIRSFIDFLVEKAKTVEGD
>LR134365.1|VEG76613.1|706665_707064_+|DoxX
MRFLAPYQSTILSLVRIASAYMFILHGTTKAFGFPSAPQYPLEWMSIFGAAAALELVGGALLLLGLFTRPVAFILSGQMAVAYFMFHAGADNFLYPLLNHGESAVLFSFIFLYFAAAGGGCLALDRLCCKKD
>LR134365.1|VEG76614.1|707066_707666_+|Nitroreductase-family
MNAIEQAIATRRSVYALNRDLPLPPHEIVATIEHALRHAPSPFNSQSTRLLVLFGAEHEKLWDMTADALRAVVPTEVFAPTAEKIAGFRAAAGTVLFFEDRNVIKGLQERFPSYADTFPGSADQAGAMLQYALWTTFATQRIGANLQHYNPLIDSAVAQTWDIPANWHLRAQLVFGGIAAAPAEKALAPTAERLRVAGL
>LR134365.1|VEG76615.1|708284_709001_+|Uncharacterised-protein
MSLPRGERPLTRRKSSPTRRFQFALPHGERHRAAGQTPRDLLFQFALPHGERLFDFCAIAAPAQVSIRAPAWGATDTAAITTNPPKVSIRAPAWGATSSSACLLPASAFQFALPHGERPWRWTGCWPRWTFQFALPHGERLCRNDDAKSETRFQFALPHGERRQPHKACQEGIRFNSRSRMGSDRPCMGFPGLCRVSIRAPAWGATNRAPCSCGRSAVSIRAPAWGATAIMQWQVQPA
>LR134365.1|VEG76616.1|709438_710431_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG
MRKLQNTLYITTQGSYLHKERERKKVAQSPVHSIGHIFCFGNVLVSPFLLGFCDENNVNLAFFTENGRYLGRFQGRQSGNVLLRRAQYQVSEQNPVPIARNIIAAKIQASKRVLQRQIRNYGENVAIQSAVDALNISLRQLKGAEELDVVRGIEGDAAARYFGVFGQLLSEKSGFTFDGRNRRPPRDRVNALLSFVYSILGKDISGALQGVGLDPQVGFLHADRPGRDSLTQDILEEFRAWWIDRLVLSLVNRKQIQISDFVTEASGAVQLKDDSRKHLFQALQAKKQEKIIHPYLQEEIEIGLLPHIQALLLARHLRGDLAQYPPFLMR
>LR134365.1|VEG76617.1|710529_712269_-|Uncharacterised-protein
MNKTVHWFECLMSHLEIMEEEKRKFVLSLIDKPLDISDSDIKKYIPGVLGRELFLLRKYISYSLANKKHLFTKGVKSIGCKTYILNNGEEKLIDNAKIIENEYRERIKDDLVKNNLPLWYQLSYQDKCNLYAFYAFSEFVSYILLGVIEYDSNYEGCKKYKLNKELLKSYKMIWFARYFTKQSHFSDVIFRNEIGRKLIHRDSYLFQDFVDIVLDKYISFHPLYTKFLDSADNVIFSDIRRLAEIVSFFSLQHDVKDINNTQPIISRDKLYEFGFSEDEIKYLFKKLDDFEVHENDRIVTELDNKLIRLNNINLKFAIKTISSKYLTNMDKIGSWFEGDYLLEYLKNKLDSNRFIVTNGINDPKEKYDADIIIYDRSSNLIYFCQIKHRIATIHPFFKDEFNEYCRNESLNHGIDQLCSLRSKALTDKVKERLISRLGKKIVNKLDMAKNCRFILIHSIENLDMCTKNGISMYEWNTFRNILQGKFSSFKVLSKDANLNCIYYSNKLLDFSDIVSVQDYLIKNLQKIYDDSLSTNLGPAEEWEILNGARALFMFNTSISCMNRPFLTYKWISWEIPLII
>LR134365.1|VEG76618.1|712289_712892_-|CRISPR-associated-protein-Cas4
MNIPLSALQHYAFCTRQCALIHNEQAWAENYLTAQGKALHERVDSGEPETRKGVRFERTVHVSAEKLGISGVLDLVEVGTKTGRLKPVEYKRGKPKPDPMDEIQLCAQGLCLEEMMGQTVSEGALWYGQTCHRVPVMFSDGLRAKTLTTIAAVRELLNSGQTPPPDYGKRCKACSLVEICQPELLGKRDRSVGYVEGLFE
>LR134365.1|VEG76619.1|712916_713264_-|Predicted-enzyme-related-to-lactoylglutathione-lyase
MKYDNFFFPADDLAASCHFYQDVLDLPVKFDFSENGMVAFRVGNEEAAIILKERKKFPDMTPTVWIEVEDVRTKYAALQGRNINFLSEPFRIRTGWVVEFIDPSGNRLGFVDYQE
>LR134365.1|VEG76620.1|713291_714155_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair
MSIQNRYEFVYFFDVTNGNPNGDPDAGNMPRLDPESSKGLVTDVCLKRKIRNFIEVTCENAPGYEIYVKEKSVLNLQNKRAYEALGVAPEAKKLPKDEAKAREITAWMCNNFFDIRSFGAVMTTEVNSGQVRGPVQLAFAQSLDPIVPLEVSITRMAVTNEKDLDKERTMGRKHIVPYALYRMHGFISANLAAKTGFSDDDLAKLWQALTLMFEHDRSAARGEMAARKLIVFKHDSALGSQPAHKLFDAVKVERVNGESGTPASGFGDYNISVVSDGLNGVSVEELL
>LR134365.1|VEG76621.1|714165_716016_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG
MILQSLDRYYYRLLSEKDSEGKVKVPNYGYSDEKIGWILVLSKNGQVIDAIPHLTTDKKPQPKRMFVPQAFKRPGTTPKPFFLWDKTSYTLGITANKNKATVKTQPYIIKTDTFDSFKEAHLKLLKNTNDVGLRAFIHFLERWEPEHFALSPFNTEMIDANIVFKLDGQRKQLFEQPAAQALWAKWLNYVAADKWFEYQEEQEPSLFDEPQKKSPKEYGICLVSGDYEPVARTHPAIKEIWRGQSSGCSIVSFNGDAFESFGKEQGANAPISERVAFSYVAALNYLLRRENRHCLTIGDASTVFWAEAPDNNSAEAEEAFFLDMMTVTDGEENQKVFDILQQIAKDRSLKEIAPNLHEDTRFYILGLEPNVSRISIRFWLNTTFGQLAQNLTAHWQDLAIEPCPWQTPPSIWRLLIQTALLGKTENISPILAGEMTRAIINGTPYPMSLLSQLLARIRADGDANGLRIAMIKAILARKFRKGLIKEGVPMSLNKESTNRAYLLGRMFAVLERIQYQALGDINASIADRYYGSASAVPFSVFPRLLVGARHHLSRLRKDKPGLAVNLDKDLGEIIAALPEHYPRHFSIDEQGRFSIGYYQQKQSYFSPKEAVTTTEE

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Crispr_ID: LR134365_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134365_3

708278-708967

TypeI

Consensus_repeat	Method
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CRISPRCasFinder
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CRT
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	PILER-CR

10 spacers

cas1,cas4,cas7,cas8c,cas5

The CRISPR arrays of LR134365_3

>merge|LR134365|3|708278-708967|CRISPRCasFinder,CRT,PILER-CR
ACATAAAATGTCACTCCCGCGTGGGGAGCGACCATTGACGCGGCGCAAGTCCTCGCCGACGCGGCGGTTTCAATTCGCACTCCCGCATGGGGAGCGACATCGTGCGGCAGGGCAAACGCCACGAGACTTATTGTTTCAATTCGCGCTCCCGCATGGGGAGCGACTTTTCGATTTTTGTGCCATCGCTGCTCCAGCGCAGGTTTCAATTCGCGCTCCCGCATGGGGAGCGACCGATACAGCGGCGATAACAACAAATCCACCAAAGGTTTCAATTCGCGCTCCCGCATGGGGAGCGACCTCCAGTAGCGCATGCCTGCTACCTGCCTCAGCGTTTCAATTCGCGCTCCCGCATGGGGAGCGACCTTGGCGATGGACAGGGTGCTGGCCGCGTTGGACGTTTCAATTCGCGCTCCCGCATGGGGAGCGACTGTGTCGCAACGATGACGCCAAAAGCGAAACGCGGTTTCAATTCGCGCTCCCGCATGGGGAGCGACGTCAGCCCCACAAAGCGTGCCAAGAAGGCATCCGTTTCAATTCGCGCTCCCGCATGGGGAGCGACCGCCCCTGCATGGGTTTTCCCGGTCTTTGCCGTGTTTCAATTCGCGCTCCCGCATGGGGAGCGACAAATCGCGCCCCATGTAGCTGCGGTAGAAGCGCAGTTTCAATTCGCGCTCCCGCATGGGGAGCGAC

>LR134365|3|3|708278-708967|CRISPRCasFinder
ACATAAAATGTCACTCCCGCGTGGGGAGCGAC	CATTGACGCGGCGCAAGTCCTCGCCGACGCGGCG
GTTTCAATTCGCACTCCCGCATGGGGAGCGAC	ATCGTGCGGCAGGGCAAACGCCACGAGACTTATT
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	TTTTCGATTTTTGTGCCATCGCTGCTCCAGCGCAG
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CGATACAGCGGCGATAACAACAAATCCACCAAAG
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CTCCAGTAGCGCATGCCTGCTACCTGCCTCAGC
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CTTGGCGATGGACAGGGTGCTGGCCGCGTTGGAC
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	TGTGTCGCAACGATGACGCCAAAAGCGAAACGCG
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	GTCAGCCCCACAAAGCGTGCCAAGAAGGCATCC
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CGCCCCTGCATGGGTTTTCCCGGTCTTTGCCGT
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	AAATCGCGCCCCATGTAGCTGCGGTAGAAGCGCA
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC

>LR134365|3|2|708278-708967|CRT
ACATAAAATGTCACTCCCGCGTGGGGAGCGAC	CATTGACGCGGCGCAAGTCCTCGCCGACGCGGCG
GTTTCAATTCGCACTCCCGCATGGGGAGCGAC	ATCGTGCGGCAGGGCAAACGCCACGAGACTTATT
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	TTTTCGATTTTTGTGCCATCGCTGCTCCAGCGCAG
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CGATACAGCGGCGATAACAACAAATCCACCAAAG
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CTCCAGTAGCGCATGCCTGCTACCTGCCTCAGC
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CTTGGCGATGGACAGGGTGCTGGCCGCGTTGGAC
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	TGTGTCGCAACGATGACGCCAAAAGCGAAACGCG
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	GTCAGCCCCACAAAGCGTGCCAAGAAGGCATCC
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CGCCCCTGCATGGGTTTTCCCGGTCTTTGCCGT
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	AAATCGCGCCCCATGTAGCTGCGGTAGAAGCGCA
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC

>LR134365|3|3|708344-708967|PILER-CR
GTTTCAATTCGCACTCCCGCATGGGGAGCGAC	ATCGTGCGGCAGGGCAAACGCCACGAGACTTATT
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	TTTTCGATTTTTGTGCCATCGCTGCTCCAGCGCAG
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CGATACAGCGGCGATAACAACAAATCCACCAAAG
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CTCCAGTAGCGCATGCCTGCTACCTGCCTCAGC
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CTTGGCGATGGACAGGGTGCTGGCCGCGTTGGAC
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	TGTGTCGCAACGATGACGCCAAAAGCGAAACGCG
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	GTCAGCCCCACAAAGCGTGCCAAGAAGGCATCC
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	CGCCCCTGCATGGGTTTTCCCGGTCTTTGCCGT
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC	AAATCGCGCCCCATGTAGCTGCGGTAGAAGCGCA
GTTTCAATTCGCGCTCCCGCATGGGGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134365.1\|VEG76613.1\|706665_707064_+\|DoxX	unknown	unknown	gnl\|CDD\|225168
LR134365.1\|VEG76609.1\|702490_703786_+\|Probable-periplasmic-serine-endoprotease-DegP-like-precursor	unknown	unknown	gnl\|CDD\|379142
LR134365.1\|VEG76614.1\|707066_707666_+\|Nitroreductase-family	unknown	unknown	gnl\|CDD\|226090
LR134365.1\|VEG76608.1\|701297_702494_+\|Tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
LR134365.1\|VEG76618.1\|712289_712892_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
LR134365.1\|VEG76617.1\|710529_712269_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134365.1\|VEG76623.1\|717406_718825_+\|Putative-arginine/ornithine-antiporter	unknown	unknown	gnl\|CDD\|129983
LR134365.1\|VEG76612.1\|705671_706565_-\|D-malate-degradation-protein-R	unknown	unknown	gnl\|CDD\|176114
LR134365.1\|VEG76605.1\|699079_699385_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134365.1\|VEG76620.1\|713291_714155_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
LR134365.1\|VEG76625.1\|720777_721038_-\|Phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|376329
LR134365.1\|VEG76619.1\|712916_713264_-\|Predicted-enzyme-related-to-lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|366361
LR134365.1\|VEG76607.1\|700129_701239_-\|Glycyl-glycine-endopeptidase-ALE-1-precursor	unknown	unknown	gnl\|CDD\|366703
LR134365.1\|VEG76606.1\|699651_700122_-\|Ribosomal-RNA-large-subunit-methyltransferase-H	unknown	unknown	gnl\|CDD\|234634
LR134365.1\|VEG76610.1\|703770_704670_+\|FHA-domain	unknown	unknown	gnl\|CDD\|379873
LR134365.1\|VEG76621.1\|714165_716016_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
LR134365.1\|VEG76624.1\|718959_720678_-\|Phosphoenolpyruvate-protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
LR134365.1\|VEG76611.1\|704723_705194_+\|DNA-protection-during-starvation-protein-2	unknown	unknown	gnl\|CDD\|223854
LR134365.1\|VEG76616.1\|709438_710431_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
LR134365.1\|VEG76622.1\|716012_716702_-\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534

Protein	Function_ID	Function_description	E-value
LR134365.1\|VEG76613.1\|706665_707064_+\|DoxX	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.13118e-14
LR134365.1\|VEG76609.1\|702490_703786_+\|Probable-periplasmic-serine-endoprotease-DegP-like-precursor	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.35266e-24
LR134365.1\|VEG76614.1\|707066_707666_+\|Nitroreductase-family	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	6.62146e-95
LR134365.1\|VEG76608.1\|701297_702494_+\|Tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
LR134365.1\|VEG76618.1\|712289_712892_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.36409e-39
LR134365.1\|VEG76623.1\|717406_718825_+\|Putative-arginine/ornithine-antiporter	gnl\|CDD\|129983	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. [Transport and binding proteins, Amino acids, peptides and amines].	4.46699e-137
LR134365.1\|VEG76612.1\|705671_706565_-\|D-malate-degradation-protein-R	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.02605e-71
LR134365.1\|VEG76607.1\|700129_701239_-\|Glycyl-glycine-endopeptidase-ALE-1-precursor	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.80209e-47
LR134365.1\|VEG76620.1\|713291_714155_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.10906e-153
LR134365.1\|VEG76625.1\|720777_721038_-\|Phosphocarrier-protein-HPr	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	1.60628e-29
LR134365.1\|VEG76619.1\|712916_713264_-\|Predicted-enzyme-related-to-lactoylglutathione-lyase	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	9.87639e-07
LR134365.1\|VEG76606.1\|699651_700122_-\|Ribosomal-RNA-large-subunit-methyltransferase-H	gnl\|CDD\|234634	PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional.	2.43148e-70
LR134365.1\|VEG76610.1\|703770_704670_+\|FHA-domain	gnl\|CDD\|379873	pfam16697, Yop-YscD_cpl, Inner membrane component of T3SS, cytoplasmic domain. Yop-YscD-cpl is the cytoplasmic domain of Yop proteins like YscD from Proteobacteria. YscD forms part of the inner membrane component of the bacterial type III secretion injectosome apparatus.	2.12663e-07
LR134365.1\|VEG76621.1\|714165_716016_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
LR134365.1\|VEG76624.1\|718959_720678_-\|Phosphoenolpyruvate-protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
LR134365.1\|VEG76611.1\|704723_705194_+\|DNA-protection-during-starvation-protein-2	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.20127e-69
LR134365.1\|VEG76616.1\|709438_710431_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
LR134365.1\|VEG76622.1\|716012_716702_-\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	7.41391e-110

>LR134365.1|VEG76614.1|707066_707666_+|Nitroreductase-family
MNAIEQAIATRRSVYALNRDLPLPPHEIVATIEHALRHAPSPFNSQSTRLLVLFGAEHEKLWDMTADALRAVVPTEVFAPTAEKIAGFRAAAGTVLFFEDRNVIKGLQERFPSYADTFPGSADQAGAMLQYALWTTFATQRIGANLQHYNPLIDSAVAQTWDIPANWHLRAQLVFGGIAAAPAEKALAPTAERLRVAGL
>LR134365.1|VEG76613.1|706665_707064_+|DoxX
MRFLAPYQSTILSLVRIASAYMFILHGTTKAFGFPSAPQYPLEWMSIFGAAAALELVGGALLLLGLFTRPVAFILSGQMAVAYFMFHAGADNFLYPLLNHGESAVLFSFIFLYFAAAGGGCLALDRLCCKKD
>LR134365.1|VEG76612.1|705671_706565_-|D-malate-degradation-protein-R
MDTLLSLKIFAQIVESGSFTRASEYLGISTAMASKHLSHLEKHLGIRLMQRNSRSLSLTAEGEVYYRQSIEALQLLDAAAAQAGSGRETPQGHLRLTAPIWCANPVFADWMREYRARYPEVSLDIILDNDMRDLIGEGIDLALRVSRAPIPSLVVRRLFEVRFALVASPAYIRRHGLPRTLEDAASHSAVLPSYADISRMDCRRGDESHTLHLHSALQSNSTVMLHQLLLAGSGIGYLPLWLAQDDLTAGRLVRLLPDWQLRSITLHAAYPDRRHLSAKIRSFIDFLVEKAKTVEGD
>LR134365.1|VEG76611.1|704723_705194_+|DNA-protection-during-starvation-protein-2
MSINIGMSEAQRKTIAEGLAKVLADSYTLYLKTHKFHWNVEGPMFRTLHLMFEEQYTELATAVDEIAERIRALGFPAPGSYSEFAALTSIKECNGKTDALTMIQELVDGQETVVRTCRAFFPAVDEANDEATADLLTTRMQTHEKTAWMLRALLEK
>LR134365.1|VEG76610.1|703770_704670_+|FHA-domain
MATELTVENQDNIYRVHTYPVRIGRAKDNDIIVKAPFVADYHAVIEQGAQGLTIRSLEQSHANGERIPTTRPLTNNTLLQIGTATLKLWLDSGKPMPLAHKQRRWWPLFTHPVAVTAWFLAAIFLTMWQGYLDSPQSYIVDYNRLITAVIILLGLTWITHSMIQPLARRYLILPVLGLISAYSTLSDLLTAAADWYSFQFNSTGASTAATILGFAGFLALYRAFLRDHIPLAGRILWRATALTLLPTLLLVTYGYLRDHDFYSQRPGSYPVYPNKLQSSVLLDGQIKPIKNFFSIDKNE
>LR134365.1|VEG76609.1|702490_703786_+|Probable-periplasmic-serine-endoprotease-DegP-like-precursor
MRKLALLCALSAGGALAQPVLPAQNENGEPAAVPFSVNALFASYKPSIYQVRTINAATGQKTSIGSGFVIGDGKMIATNYHVIADAVNKEKHDIEYISTDDREGKLRLLAVDVVHDLAIVAADHELGKAFKLGGIPEQGEALYALGNPGDLGFIIVDGINNGILQKSARSRILFSGAINSGMSGGPTVNKSGEVVGINVESQGNDIGFLVPANHLADLLKQAEAGAVNINESIADQLIADNDKYYTPFFSGKWKTATIGHFTVPTESGGDLRCWDVSPEQQLEDLAVSESVICQSDRTTYISHDIQFGAMGFIYSNFYARDPILTSRFYHLYSQEYRLPYEHRSSRDFGDFACKADFVSIGGKPFKTTYCTQPSKKFIKNGEPVSDLYLIAAQIGEKQQGFTITMMLTGIQENLGKRVMAHLLEQITWQQN
>LR134365.1|VEG76608.1|701297_702494_+|Tyrosine--tRNA-ligase
MVLDEQLALFRRGAVDFIGEEELRAKLAAGKKLRVKLGMDPTAPDLHFGHTVVLNKLRQFQDAGHQVLFLIGDFTALIGDPSGKSATRPPLSPEQVLANAETYKEQVFKILDPAKTEVMFNSHWMGPMSSTDMIRLAAKYTVARILERDDFQKRYTEGRPIALHEFLYPLTQGYDSVAMEADVELGGTDQKFNLLVGRDLQREYGQSPQAIITMPILEGLDGVQKMSKSLGNYIGIFDPANEMFGKIMSISDELMWRWFTLLSFRSMDEIAALQAEVTAGRNPRDVKFELARELVARFHDEAAAAAAQEAFVNRFAKNEIPEDLEEFRIDAPDGALGIAHVLKAAGLVGSTSEGLRMVDGGAVKVDGERVASRDFKLERGFSGIVQAGKRRIVKVVLV
>LR134365.1|VEG76607.1|700129_701239_-|Glycyl-glycine-endopeptidase-ALE-1-precursor
MPQHPHNDRTQQRLLPWIALIGFLGVALYAILPADFWLPEYKSAHHTVTPPQAITADDFEDNDWEDEIAQQPPKLPPVTAPPKEIPGPPLSAKPSAQTADGGQFKKHYQTYRLPGDYWHNLQKSGLNPTLLAQLEPLQTRLENPALTHLELLYSDYYKDGKTDPKNSKIIAVRLNTARGSDSWYARHENQNTWYYDADGNAPEAAMDRIPLASYDHISSPFDPVRLHPITRIIRPHEGTDFKAAYGAPVRATGDGVVRFAGWQGGYGRVIIIDHANGYQTRYAHLSDINVETGAAVKRGQTIGNLGNSGRSTGSHLHYEVRINDIPHDPMTVDLPSTRPLAANYKDAWQYRCGQYEKEMNALAKNKTTR
>LR134365.1|VEG76606.1|699651_700122_-|Ribosomal-RNA-large-subunit-methyltransferase-H
MHIEIIAVGQKMPDWVNRGYADYADRLTGDLTLGLTEIPLQKRGSASQLAAAQNKEAAQIRSALHACDHIVTLDIPGREHSSESLAARLQHWQENHRQLALIIGGPEGIAPDIKALAHESWSLGKLTLPHPLVRIIVAEALYRAWSINRNHPYHRA
>LR134365.1|VEG76605.1|699079_699385_+|Uncharacterised-protein
MTETDPFARIRLPDSGEILEEHRFPLFEYTGLYQKLRVPAAGVQVESIVVSLEEAAGRDTQYLLNLVVASGYVAEDADLTFRENRAGGYLYTYFNIQPLET
>LR134365.1|VEG76616.1|709438_710431_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG
MRKLQNTLYITTQGSYLHKERERKKVAQSPVHSIGHIFCFGNVLVSPFLLGFCDENNVNLAFFTENGRYLGRFQGRQSGNVLLRRAQYQVSEQNPVPIARNIIAAKIQASKRVLQRQIRNYGENVAIQSAVDALNISLRQLKGAEELDVVRGIEGDAAARYFGVFGQLLSEKSGFTFDGRNRRPPRDRVNALLSFVYSILGKDISGALQGVGLDPQVGFLHADRPGRDSLTQDILEEFRAWWIDRLVLSLVNRKQIQISDFVTEASGAVQLKDDSRKHLFQALQAKKQEKIIHPYLQEEIEIGLLPHIQALLLARHLRGDLAQYPPFLMR
>LR134365.1|VEG76617.1|710529_712269_-|Uncharacterised-protein
MNKTVHWFECLMSHLEIMEEEKRKFVLSLIDKPLDISDSDIKKYIPGVLGRELFLLRKYISYSLANKKHLFTKGVKSIGCKTYILNNGEEKLIDNAKIIENEYRERIKDDLVKNNLPLWYQLSYQDKCNLYAFYAFSEFVSYILLGVIEYDSNYEGCKKYKLNKELLKSYKMIWFARYFTKQSHFSDVIFRNEIGRKLIHRDSYLFQDFVDIVLDKYISFHPLYTKFLDSADNVIFSDIRRLAEIVSFFSLQHDVKDINNTQPIISRDKLYEFGFSEDEIKYLFKKLDDFEVHENDRIVTELDNKLIRLNNINLKFAIKTISSKYLTNMDKIGSWFEGDYLLEYLKNKLDSNRFIVTNGINDPKEKYDADIIIYDRSSNLIYFCQIKHRIATIHPFFKDEFNEYCRNESLNHGIDQLCSLRSKALTDKVKERLISRLGKKIVNKLDMAKNCRFILIHSIENLDMCTKNGISMYEWNTFRNILQGKFSSFKVLSKDANLNCIYYSNKLLDFSDIVSVQDYLIKNLQKIYDDSLSTNLGPAEEWEILNGARALFMFNTSISCMNRPFLTYKWISWEIPLII
>LR134365.1|VEG76618.1|712289_712892_-|CRISPR-associated-protein-Cas4
MNIPLSALQHYAFCTRQCALIHNEQAWAENYLTAQGKALHERVDSGEPETRKGVRFERTVHVSAEKLGISGVLDLVEVGTKTGRLKPVEYKRGKPKPDPMDEIQLCAQGLCLEEMMGQTVSEGALWYGQTCHRVPVMFSDGLRAKTLTTIAAVRELLNSGQTPPPDYGKRCKACSLVEICQPELLGKRDRSVGYVEGLFE
>LR134365.1|VEG76619.1|712916_713264_-|Predicted-enzyme-related-to-lactoylglutathione-lyase
MKYDNFFFPADDLAASCHFYQDVLDLPVKFDFSENGMVAFRVGNEEAAIILKERKKFPDMTPTVWIEVEDVRTKYAALQGRNINFLSEPFRIRTGWVVEFIDPSGNRLGFVDYQE
>LR134365.1|VEG76620.1|713291_714155_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair
MSIQNRYEFVYFFDVTNGNPNGDPDAGNMPRLDPESSKGLVTDVCLKRKIRNFIEVTCENAPGYEIYVKEKSVLNLQNKRAYEALGVAPEAKKLPKDEAKAREITAWMCNNFFDIRSFGAVMTTEVNSGQVRGPVQLAFAQSLDPIVPLEVSITRMAVTNEKDLDKERTMGRKHIVPYALYRMHGFISANLAAKTGFSDDDLAKLWQALTLMFEHDRSAARGEMAARKLIVFKHDSALGSQPAHKLFDAVKVERVNGESGTPASGFGDYNISVVSDGLNGVSVEELL
>LR134365.1|VEG76621.1|714165_716016_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG
MILQSLDRYYYRLLSEKDSEGKVKVPNYGYSDEKIGWILVLSKNGQVIDAIPHLTTDKKPQPKRMFVPQAFKRPGTTPKPFFLWDKTSYTLGITANKNKATVKTQPYIIKTDTFDSFKEAHLKLLKNTNDVGLRAFIHFLERWEPEHFALSPFNTEMIDANIVFKLDGQRKQLFEQPAAQALWAKWLNYVAADKWFEYQEEQEPSLFDEPQKKSPKEYGICLVSGDYEPVARTHPAIKEIWRGQSSGCSIVSFNGDAFESFGKEQGANAPISERVAFSYVAALNYLLRRENRHCLTIGDASTVFWAEAPDNNSAEAEEAFFLDMMTVTDGEENQKVFDILQQIAKDRSLKEIAPNLHEDTRFYILGLEPNVSRISIRFWLNTTFGQLAQNLTAHWQDLAIEPCPWQTPPSIWRLLIQTALLGKTENISPILAGEMTRAIINGTPYPMSLLSQLLARIRADGDANGLRIAMIKAILARKFRKGLIKEGVPMSLNKESTNRAYLLGRMFAVLERIQYQALGDINASIADRYYGSASAVPFSVFPRLLVGARHHLSRLRKDKPGLAVNLDKDLGEIIAALPEHYPRHFSIDEQGRFSIGYYQQKQSYFSPKEAVTTTEE
>LR134365.1|VEG76622.1|716012_716702_-|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG
MGIKLHIWGKYACFTRPEMKVERVSYDVITPSAARGILTAIHWKPAMLWEIKKIHVLKPIRFESVRRNELGGKISASNVTSAMKRKSVQDLYTLIEDDRQQRAATVLKDVAYIIEAHIQLNHAFIAQSDRAEEESVNKHLEMFKRRARNGQCFQQPCMGVREFPANFALIEDSESLPACELPENERNRELGWMLHDMDFAHGNTPHFFRAEMKNGIIEVPLFRAKEVKS
>LR134365.1|VEG76623.1|717406_718825_+|Putative-arginine/ornithine-antiporter
MTPQKIGLTALTALVLSSMIGSGIFSLPQNMAEVAGAEALIIGWTITGVGIIALGLSFWYLARLRPTLDGGIYAYARDGFGELVGFFSAWGYWLCATIGVTGYLVVAFEALGGFTDTPGQVFFGKGNTPAAFVGESAIVWAVYWLAARGVKEAAGVNLVATLVKVFPLLLFIGLALWFFRGETFAADWHGAGLQATTLTQVKDTMLITLWVFTGVEGAAVLSAHARKRSDVGLATVLGILIALALYVAITVLALGVLPRAEIAALANPSMAGVLQAMMGSAGGIIISTCLIVSVLASYLSWTLYSMEVPFYGAQYGAFPRTLAAQNENGVPHHSLRFSCITVQVCLLLVLLTGESYNALLKISTSMILVPYLLIGAYLLKITLRERLAPHIVAVGTVATLYALWILYAAGMGYLLLSVLLYVPGVALFLYAQTRFHGRFPRLQAGEIALLALLLLLLVPALQQVLADLRGAG
>LR134365.1|VEG76624.1|718959_720678_-|Phosphoenolpyruvate-protein-phosphotransferase
MKNYEGLAASPGIAIGQAWIFRPQTPNIDTRSITEDEIKSEYRAFRNAQAKVDAHLEALYNRVLEKQGEHEAAIFESHRELLADEELENDIQALIRDERKTATAAVKEYLDQVAASMRALEDEYLRERAAEFEDLQNNLLLALNGLPFASLASAPPDSVIFAEDLTPSETAQLDVEKVRGFVLEHGGLTSHVAILARNLGMPAVMGMRNIMNEVRSGITALLDGDTGKLILDPDDKTRGLYTEKKAQQDAQKAEYAKLHGKPATTEDGKTFALYSNIGSPNDLHLIDENGSEGIGLFRSEFLFMENKQAPSEDQQYAIYRKVAEHMKGKTVILRLLDIGGDKPLSYLNFPKEENPFLGWRGVRLYKDNPEVFLSQIRAAIRAAAYGDLWVMIPMVISLDEVRWVKQQIAEQSVKLEAEGRNHNPHIKVGIMIETPASALIAEQLAQEAAFFSIGTNDLTQYTLAVDRGNTKISVLYDGLHPAVLRLMKMTCDAGRKAGIDVGICGEMGGQLEATPLLVGMGFNEISISGKMLPAVKYSISRLNAAACRELLDKAIAANDAEAVRKLLQDIKH
>LR134365.1|VEG76625.1|720777_721038_-|Phosphocarrier-protein-HPr
MQEKNLTLNNPSGLHARPAKDFVQLAKGFEANVTIVKDGNEYNGKSLMKLLQAGLSKGDQLVLKTDGADEADALEKLADYITNLAE

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Crispr_ID: LR134365_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134365_4

962053-964243

Unclear

Consensus_repeat	Method
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CRISPRCasFinder
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CRT
ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC	PILER-CR

31 spacers

csx1,cas2,cas1

The CRISPR arrays of LR134365_4

>merge|LR134365|4|962053-964243|CRISPRCasFinder,CRT,PILER-CR
GAAAAAATCCCTTTGGGTCAGGGACAGGTTTTTAATGGCCAGGCAAAAACCGACCGCCTCAACTTCCGTCAGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATCTATCCGGGAGGGAAGACGTGATTATTTCGAGAAGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATCCTTCGGGGCGCGAATTGAAACAAAACTACCGTTGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATTCATGACCCGCAACCGATCGTGCATCTCTACCTGGTCGCAATCCTTTTGGGTCAGGGACAGGTTTTTAATTACTACCGCAGCGAAGCGCGGCAACAACGGGCGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATCTGACTTCCAAGAAGAAGATATCTATTTTGTCGGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATTTGACGAGATTTTCAGGTTTATCGAGCGGCTTTTGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATGGTTGAGTATATTGCTGGCAAGCCCTCGATTGTAGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATTTGAAGAACAAGCGAGTGAAGAAGGCTTCCTTCTGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATTTTAATGCCCGCTGATAAAGAATGAAAGGAACGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATTTCCTCCTCTGGATATCTTATTCAGTACTCATCTGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATAAGATATGACGCTTATGAATTTAGTTTTTCGGCGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATCTGGCGTAACGGTGCGAAACCACAACCCTAACCGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATTTTCCCCATGATTGAATTTGCAATTGTTCTTTTGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATGCGTATACTTAAGCCAGTTGATAGAGCTATCAAGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATGCCAGTAGGAATCAAATTCCTAAGTGATGGAAAGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATCTGTTAGCGCAAATGGAGAGTGCCGCATGAGTACGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATGGCATTATGCACCACAGCATTACGAGTCGGCGGGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATAGAACAGTATTTCGATGATATTTTCAATAACTATGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATCACTTTAAATAGATAGTCCGTAGGAGGCTTAAAAGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATCACTTAAAGAAAAAGCCCTCGACGAAGGCTACCTGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATGTCTATCATGTTAAAACAAATTATCCTTGGTGCGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATGTCTATAAAAACTGGGGATAACGTAACAAGAGCGGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATAACTTTCAAACTGAAATCTTCCGCACAACGCCAAGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATGGTATCGAATATGTGAATGGCTTGCCGTTACAGCAGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATTTTCAACCAAATTCAAATAAAAGGACTTGCCGTGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATGTACAGCCAAGCAGTTTAGCTAAAGTTTTGTTTGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATCATTGACGAAGATGAATACGACGAAGACGGTGAGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATGATGACGAAGGCGTTTACATTGACTTTAACACGGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATGCGTCGTCACCCGCGCTTACATCGTCGCCTGTCGGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAATCCCGCAGACGTCTGCGCCAAGTACGACCGCGCCGTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT

>LR134365|4|4|962053-964243|CRISPRCasFinder
GAAAAAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GGCCAGGCAAAAACCGACCGCCTCAACTTCCGTCA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTATCCGGGAGGGAAGACGTGATTATTTCGAGAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CCTTCGGGGCGCGAATTGAAACAAAACTACCGTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TCATGACCCGCAACCGATCGTGCATCTCTACCTG
GTCGCAATCCTTTTGGGTCAGGGACAGGTTTTTAAT	TACTACCGCAGCGAAGCGCGGCAACAACGGGC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTGACTTCCAAGAAGAAGATATCTATTTTGTCG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTGACGAGATTTTCAGGTTTATCGAGCGGCTTTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GGTTGAGTATATTGCTGGCAAGCCCTCGATTGTA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTGAAGAACAAGCGAGTGAAGAAGGCTTCCTTCT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTTAATGCCCGCTGATAAAGAATGAAAGGAAC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTCCTCCTCTGGATATCTTATTCAGTACTCATCT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	AAGATATGACGCTTATGAATTTAGTTTTTCGGC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTGGCGTAACGGTGCGAAACCACAACCCTAACC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTTCCCCATGATTGAATTTGCAATTGTTCTTTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GCGTATACTTAAGCCAGTTGATAGAGCTATCAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GCCAGTAGGAATCAAATTCCTAAGTGATGGAAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTGTTAGCGCAAATGGAGAGTGCCGCATGAGTAC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GGCATTATGCACCACAGCATTACGAGTCGGCGG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	AGAACAGTATTTCGATGATATTTTCAATAACTAT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CACTTTAAATAGATAGTCCGTAGGAGGCTTAAAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CACTTAAAGAAAAAGCCCTCGACGAAGGCTACCT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GTCTATCATGTTAAAACAAATTATCCTTGGTGC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GTCTATAAAAACTGGGGATAACGTAACAAGAGCG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	AACTTTCAAACTGAAATCTTCCGCACAACGCCAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GGTATCGAATATGTGAATGGCTTGCCGTTACAGCA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTTCAACCAAATTCAAATAAAAGGACTTGCCGT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GTACAGCCAAGCAGTTTAGCTAAAGTTTTGTTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CATTGACGAAGATGAATACGACGAAGACGGTGA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GATGACGAAGGCGTTTACATTGACTTTAACACG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GCGTCGTCACCCGCGCTTACATCGTCGCCTGTCG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CCCGCAGACGTCTGCGCCAAGTACGACCGCGCC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT

>LR134365|4|3|962053-964243|CRT
GAAAAAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GGCCAGGCAAAAACCGACCGCCTCAACTTCCGTCA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTATCCGGGAGGGAAGACGTGATTATTTCGAGAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CCTTCGGGGCGCGAATTGAAACAAAACTACCGTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TCATGACCCGCAACCGATCGTGCATCTCTACCTG
GTCGCAATCCTTTTGGGTCAGGGACAGGTTTTTAAT	TACTACCGCAGCGAAGCGCGGCAACAACGGGC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTGACTTCCAAGAAGAAGATATCTATTTTGTCG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTGACGAGATTTTCAGGTTTATCGAGCGGCTTTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GGTTGAGTATATTGCTGGCAAGCCCTCGATTGTA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTGAAGAACAAGCGAGTGAAGAAGGCTTCCTTCT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTTAATGCCCGCTGATAAAGAATGAAAGGAAC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTCCTCCTCTGGATATCTTATTCAGTACTCATCT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	AAGATATGACGCTTATGAATTTAGTTTTTCGGC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTGGCGTAACGGTGCGAAACCACAACCCTAACC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTTCCCCATGATTGAATTTGCAATTGTTCTTTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GCGTATACTTAAGCCAGTTGATAGAGCTATCAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GCCAGTAGGAATCAAATTCCTAAGTGATGGAAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTGTTAGCGCAAATGGAGAGTGCCGCATGAGTAC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GGCATTATGCACCACAGCATTACGAGTCGGCGG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	AGAACAGTATTTCGATGATATTTTCAATAACTAT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CACTTTAAATAGATAGTCCGTAGGAGGCTTAAAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CACTTAAAGAAAAAGCCCTCGACGAAGGCTACCT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GTCTATCATGTTAAAACAAATTATCCTTGGTGC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GTCTATAAAAACTGGGGATAACGTAACAAGAGCG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	AACTTTCAAACTGAAATCTTCCGCACAACGCCAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GGTATCGAATATGTGAATGGCTTGCCGTTACAGCA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTTCAACCAAATTCAAATAAAAGGACTTGCCGT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GTACAGCCAAGCAGTTTAGCTAAAGTTTTGTTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CATTGACGAAGATGAATACGACGAAGACGGTGA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GATGACGAAGGCGTTTACATTGACTTTAACACG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GCGTCGTCACCCGCGCTTACATCGTCGCCTGTCG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CCCGCAGACGTCTGCGCCAAGTACGACCGCGCC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT

>LR134365|4|4|962124-964243|PILER-CR
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTATCCGGGAGGGAAGACGTGATTATTTCGAGAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CCTTCGGGGCGCGAATTGAAACAAAACTACCGTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TCATGACCCGCAACCGATCGTGCATCTCTACCTG
GTCGCAATCCTTTTGGGTCAGGGACAGGTTTTTAAT	TACTACCGCAGCGAAGCGCGGCAACAACGGGC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTGACTTCCAAGAAGAAGATATCTATTTTGTCG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTGACGAGATTTTCAGGTTTATCGAGCGGCTTTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GGTTGAGTATATTGCTGGCAAGCCCTCGATTGTA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTGAAGAACAAGCGAGTGAAGAAGGCTTCCTTCT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTTAATGCCCGCTGATAAAGAATGAAAGGAAC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTCCTCCTCTGGATATCTTATTCAGTACTCATCT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	AAGATATGACGCTTATGAATTTAGTTTTTCGGC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTGGCGTAACGGTGCGAAACCACAACCCTAACC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTTCCCCATGATTGAATTTGCAATTGTTCTTTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GCGTATACTTAAGCCAGTTGATAGAGCTATCAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GCCAGTAGGAATCAAATTCCTAAGTGATGGAAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CTGTTAGCGCAAATGGAGAGTGCCGCATGAGTAC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GGCATTATGCACCACAGCATTACGAGTCGGCGG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	AGAACAGTATTTCGATGATATTTTCAATAACTAT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CACTTTAAATAGATAGTCCGTAGGAGGCTTAAAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CACTTAAAGAAAAAGCCCTCGACGAAGGCTACCT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GTCTATCATGTTAAAACAAATTATCCTTGGTGC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GTCTATAAAAACTGGGGATAACGTAACAAGAGCG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	AACTTTCAAACTGAAATCTTCCGCACAACGCCAA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GGTATCGAATATGTGAATGGCTTGCCGTTACAGCA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	TTTCAACCAAATTCAAATAAAAGGACTTGCCGT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GTACAGCCAAGCAGTTTAGCTAAAGTTTTGTTT
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CATTGACGAAGATGAATACGACGAAGACGGTGA
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GATGACGAAGGCGTTTACATTGACTTTAACACG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	GCGTCGTCACCCGCGCTTACATCGTCGCCTGTCG
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT	CCCGCAGACGTCTGCGCCAAGTACGACCGCGCC
GTCGCAATCCCTTTGGGTCAGGGACAGGTTTTTAAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134365.1\|VEG76857.1\|960449_960902_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134365.1\|VEG76854.1\|956848_958225_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
LR134365.1\|VEG76864.1\|967943_968207_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|379154
LR134365.1\|VEG76853.1\|955958_956837_-\|UTP--glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|224131
LR134365.1\|VEG76866.1\|968890_969808_-\|DNA-gyrase-inhibitor	unknown	unknown	gnl\|CDD\|225117
LR134365.1\|VEG76867.1\|969808_970588_-\|Acyl-[acyl-carrier-protein]--UDP-N--acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
LR134365.1\|VEG76852.1\|954851_955847_-\|Ferrochelatase	unknown	unknown	gnl\|CDD\|234585
LR134365.1\|VEG76858.1\|960995_961385_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134365.1\|VEG76865.1\|968360_968564_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|315923
LR134365.1\|VEG76849.1\|952419_952698_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372741
LR134365.1\|VEG76851.1\|953675_954731_+\|Predicted-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|313370
LR134365.1\|VEG76859.1\|964471_964732_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
LR134365.1\|VEG76856.1\|959352_960435_-\|CRISPR-associated-protein,-NE0113-family	csx1	pfam09623_csx1_CAS-III	gnl\|CDD\|187872
LR134365.1\|VEG76863.1\|966942_967446_-\|NC-domain	unknown	unknown	gnl\|CDD\|368215
LR134365.1\|VEG76861.1\|965947_966235_-\|CRISPR-associated-protein-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
LR134365.1\|VEG76862.1\|966263_966761_-\|NC-domain	unknown	unknown	gnl\|CDD\|368215
LR134365.1\|VEG76860.1\|964929_965934_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LR134365.1\|VEG76850.1\|952923_953682_+\|Predicted-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|313370
LR134365.1\|VEG76855.1\|958217_959285_-\|Alanine-racemase,-biosynthetic	unknown	unknown	gnl\|CDD\|143500
LR134365.1\|VEG76868.1\|970771_971251_-\|(3R)-hydroxymyristoyl-[acyl-carrier-protein]-dehydratase	unknown	unknown	gnl\|CDD\|234568

Protein	Function_ID	Function_description	E-value
LR134365.1\|VEG76854.1\|956848_958225_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
LR134365.1\|VEG76865.1\|968360_968564_+\|Uncharacterised-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.90051e-05
LR134365.1\|VEG76864.1\|967943_968207_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|379154	pfam13384, HTH_23, Homeodomain-like domain.	1.80709e-05
LR134365.1\|VEG76853.1\|955958_956837_-\|UTP--glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	2.25642e-149
LR134365.1\|VEG76866.1\|968890_969808_-\|DNA-gyrase-inhibitor	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	7.2839e-23
LR134365.1\|VEG76867.1\|969808_970588_-\|Acyl-[acyl-carrier-protein]--UDP-N--acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	1.91157e-140
LR134365.1\|VEG76852.1\|954851_955847_-\|Ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	5.50765e-154
LR134365.1\|VEG76849.1\|952419_952698_-\|Uncharacterised-protein	gnl\|CDD\|372741	pfam13827, DUF4189, Domain of unknown function (DUF4189). This domain of unknown function contains six well-conserved cysteine residues.	4.20129e-07
LR134365.1\|VEG76851.1\|953675_954731_+\|Predicted-nucleotidyltransferase	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	1.83501e-21
LR134365.1\|VEG76859.1\|964471_964732_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.09928e-12
LR134365.1\|VEG76856.1\|959352_960435_-\|CRISPR-associated-protein,-NE0113-family	gnl\|CDD\|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	1.5395e-79
LR134365.1\|VEG76863.1\|966942_967446_-\|NC-domain	gnl\|CDD\|368215	pfam04970, LRAT, Lecithin retinol acyltransferase. The full-length members of this family, are representatives of a novel class II tumor-suppressor family, designated as H-REV107-like. This domain is the catalytic N-terminal proline-rich region of the protein. The downstream region is a putative C-terminal transmembrane domain which is found to be crucial for cellular localization, but not necessary for the enzyme activity. H-REV107-like proteins are homologous to lecithin retinol acyltransferase (LRAT), an enzyme that catalyzes the transfer of the sn-1 acyl group of phosphatidylcholine to all-trans-retinol and forming a retinyl ester.	3.87553e-11
LR134365.1\|VEG76861.1\|965947_966235_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.60867e-12
LR134365.1\|VEG76862.1\|966263_966761_-\|NC-domain	gnl\|CDD\|368215	pfam04970, LRAT, Lecithin retinol acyltransferase. The full-length members of this family, are representatives of a novel class II tumor-suppressor family, designated as H-REV107-like. This domain is the catalytic N-terminal proline-rich region of the protein. The downstream region is a putative C-terminal transmembrane domain which is found to be crucial for cellular localization, but not necessary for the enzyme activity. H-REV107-like proteins are homologous to lecithin retinol acyltransferase (LRAT), an enzyme that catalyzes the transfer of the sn-1 acyl group of phosphatidylcholine to all-trans-retinol and forming a retinyl ester.	6.98022e-13
LR134365.1\|VEG76860.1\|964929_965934_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.77928e-73
LR134365.1\|VEG76850.1\|952923_953682_+\|Predicted-nucleotidyltransferase	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	7.62645e-68
LR134365.1\|VEG76855.1\|958217_959285_-\|Alanine-racemase,-biosynthetic	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	2.40471e-143
LR134365.1\|VEG76868.1\|970771_971251_-\|(3R)-hydroxymyristoyl-[acyl-carrier-protein]-dehydratase	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	4.08635e-91

>LR134365.1|VEG76858.1|960995_961385_-|Uncharacterised-protein
MFLVMKAKDLSHAIWFETDNPNAEEHAAELDNLEKYHPEPVALEIYELNGKKWHRYWLEQDAWELHQQEKHEEILHSAAENMPAPAIGADTWFSFLYDSLAQIRQTLEQIHVQQTMVLNILKNVERPPF
>LR134365.1|VEG76857.1|960449_960902_-|Uncharacterised-protein
MHSDFATSEFKALVLGYQKVIDARAYGGVYYLKDNKRWIFNLPALSRALGISTPQEFAAAGYAIEDYLLYNHMSIEEMVVAVFGKDSPEYEKYCHAFAAEDDYNDEDFDFDDGLASVMCDIYEINGGDGSGDVYIGDGTWVSADGSYRCR
>LR134365.1|VEG76856.1|959352_960435_-|CRISPR-associated-protein,-NE0113-family
MREKRKILVAVTGMSPQIVTETLFALVTQQGWLPDEVHVLTTGRGAGKIGAALFAEGHFARFCADYAPEGIAFTPDNIHLIRDAAGNVLDDIRTPEENNLAADMIVRFIHDCCREEDTALHVSIAGGRKSMGFYIGYALSLFGRVQDRLSHVLINEPFENNPAFFFPPRLPQLIATPQGEVSTDRAEVMLADIPFVRMRDGMPNLALDANWTYGQAVAQTQLQWEDWRVEIDVGAQSLRFGNMPPLKLSPQLFALYAAMVALYEEGKAIGKEEMALLAHYFCRFYPKEYAENGERYGDFLASRGYEEMHRILREGSARIFKALDKHLGAPAEKFRIASSGRNNAKVYALAMGKVQIVWRR
>LR134365.1|VEG76855.1|958217_959285_-|Alanine-racemase,-biosynthetic
MRPLVKVIDVAALRHNVRVLRQQAGAAKLVAVVKADAYGHGVANVLPALTDVDGFAVASMDEALQLRQLGVGQPVLLLEGIFAADEAALCAQHDFVPCVHSPEQLAWLRGVDGISAWVKVDSGMHRLGFAAADAASWLPQVLSLQQVRWLGVASHFACADAEDLSDAQAQLARLDALALPAGWQRCLANSAALFALPEARGEVVRAGLALYGMSPFADGDAARLGLRPVLSLQTQVLAVRRLQAGDFAGYSHGFQAQVAGNLATIALGYGDGFPRAIVSGAVQLLLNGKRYPLVGRVAMDMALLWLGEDTAAVGDAVLVFGEGNPAERVAAQAATIPYTLTTMLTARVRAEVVDG
>LR134365.1|VEG76854.1|956848_958225_-|DNA-repair-protein-RadA
MAKAKSRFVCRDCGAAYPKWQGQCHECGAWNTLEEEAAPVAPPRAGKGGGYAGVAAGQVQRLDAVELQAETLVPSGISEFDRVLGGGLVRGSVVLIGGDPGIGKSTLLLQTVHHLAQSMPCLYVSGEESPRQIGLRAERLGLARERIVLFSETQIERILATAAAEQPAVLVVDSIQTLYSEALSAAPGAVSQLRECAAQLVRFAKSSGTTVFLIGHVTKEGAIAGPRVLEHMVDTVLYFESEAGSRFRMLRAVKNRFGPVNELGMFAMLENGLKPVSNPSAIFLSRPDGQQPGSAVFPVWEGSRALLVEVQALVDGGGGGYARRTALGFDSGRLAMLLAVLHRHGGVSLHDMDVYVNVVGGLKISEPAADLAVLAAAHSSLRGVAIPRDVVIMGEVGLAGELRPVANGEARIKAAAQHGFKQVILPEGNKPRGSATMRGLQIHAVATLAAALDVLSSL
>LR134365.1|VEG76853.1|955958_956837_-|UTP--glucose-1-phosphate-uridylyltransferase
MSEAVKLAVFPVAGFGTRFLPATKATPKEMLPVVDKPLIQYAVEEAYEAGIRNMVFVTGRNKWAITEHYDVAYELETELEQRGKKEFLQLVRSIKPRDMSVTYIRQEMAMGLGHAVLCAEPIVRDRPFAILLADDLVINEGKSVMRQMVEVFEKHQQGVLGVMDVPREDTKRYGIITEGAALSEQIVTVDAIVEKPDPATAPSTQAVIGRYILPGYIMQLLKNTPKGAGGEIQLTDAISALIKERTVLAYRFDGKRYDCGDKLGYLEANVELGLRHPELGEGFREYLKNLEL
>LR134365.1|VEG76852.1|954851_955847_-|Ferrochelatase
MPMPPTSPIAVLLINLGSPAAPTKKALRPYLNEFLSDRRVIDLPRWKWLPILHGIVLNTRPKRSAHAYRQIWQEDGAPLIAITARQTLALRSTLAARGLGHYHVASAMRYGQPSIKNALRDLAARGVEKLLIVPMYPQYSDATTASVFDGVAQALANQRAIPELRLVRDWHTHPRYIAALADSIRRHTLAHGATEQLLFSFHGLPARYATEGDPYPRQCEATVAAVAAELQLPAERYRLVYQSRFGNEPWLQPYADETIQALAAEGYKNIRIICPGFTADCLETLEEMAMTNRSLFLQHGGTHYDYIPALNDDPAHIELLADLVAAHTQGW
>LR134365.1|VEG76851.1|953675_954731_+|Predicted-nucleotidyltransferase
MLTLADLHAENLILFEAISGSHAYGLATPQSDTDIKGVFYLPRRLYYGLDYLPQISDASNDTTYYELGRFVELLLASNPTALELLAAPPDTIRQRAPLMDALRPAWFLSKACQQTFAGYALGQIKKARGLNKKINAPVAAKTPLDFCHILDGARALPLAAWLARSGCEQRRIGLVRLAHARDLYAIYYDADGSRGYRGIQRHPAATGLCTESVAPDSAPLAYLSYNADGYSAHCRHFAEYQQWARERNPARYASTQAHGQGYDAKNLMHTIRLLETARDLARDGTLRVRRDNRDELLAIKHGAFTYDALLTRAEALMTESAALFAASSLPDAVDKEAAIAALVAMREALYG
>LR134365.1|VEG76850.1|952923_953682_+|Predicted-nucleotidyltransferase
MQPIPAKLATLAQQENLHFLLAVESGSRAWGFASPDSDYDVRALYIRPSAHYLAIDEGKDTFEFIEDEWFDVGAWDIRKALRLLRKSNAVLLEWLRSPVVYAADSAFVRDLNTLAPQYAQAAPLLHHYRGIARNALGAMDLHGEIRLKKWFYVLRPLLAARWAVQRGGIPPMTLAELMADLPPAAVAEIRDLIALKSGQAENYRHRLSASLIALTKTLAAEVAALTAPAPPAPATAPLDALFRTTLQRVYPC
>LR134365.1|VEG76849.1|952419_952698_-|Uncharacterised-protein
MFASVISLSSKESARKMALQACNQKSGHTCQVYDYANQCLSVTTGEISEVLKIFSALSPQPGQAPLDAMQQCTAAQGKDCEFVVQEECSLPE
>LR134365.1|VEG76859.1|964471_964732_-|CRISPR-associated-endoribonuclease-Cas2
MPDYLIAYDIAAPKRLQKIHKRLCEEAIPLQNSTFLYRASPGQFEHLWQELALMSKNEDDLRAYRLPAASLCYEYHPKTPEGIYCL
>LR134365.1|VEG76860.1|964929_965934_-|CRISPR-associated-endonuclease-Cas1
MSTLYIDRQNTRMTVSGNTLIFYENGERASTLPLHIIDRICIKGDLALSAADLGKLGEHNIGVLILSGREQQPTIYLPCARKDALRRLAQAHFSQDNTFCTRQAQSWITEKIQREQDLLRELQTRPHRGGHQLHENLEQLEKSRLRLQNPINDLATLRGIEGSAASSTFAAIACVLPESLHFTKRNRNPPRDPYNVGLSLGYTLLHYAMVRQIHLTGLDPCIGYYHSIEHGRESLACDLIEAMRPLVTAWTIEAFHDRILRPEDFTMQNEACQMGKAARARYYPAFENALKNWQGEMRARCVALLRALGKACFNHPQTRACAEAFLEQEELLTL
>LR134365.1|VEG76861.1|965947_966235_-|CRISPR-associated-protein-Cas2
MPHRIPYLIAYDITNTRTQARVRRTLQGYATGGQQSFYHCWLTAAEYRRLLYTLPPQLDPATDRLHIFRINEQTETRLLGKAKTALAADAPLLII
>LR134365.1|VEG76862.1|966263_966761_-|NC-domain
MLPSIILRYAAAATATVIACGVTKSAYKNFDTKVMPKKGSVLYCDLTGSFLEHSGIYVGDNRIVHLNGKGEIEAVSPAEFLSPFALQDIYVSCMGNSAVGSERVATRALSMVGKKRNYNLVMNNCHQFTTGCLTGNFENSSNLLTFLKMQAKDTLGADTWHLWDR
>LR134365.1|VEG76863.1|966942_967446_-|NC-domain
MWKLITRAMVVAAASVATNSACGAVKSAYKNFDTKVMPKKGSVLYCDLSFGIAEHSGIYVGDNRIVHLNGKGEIEAVSPAEFLSLFALQDIYVSCMENSAVGSEHVANRALSIVGEKRSYNLMLDNCHQFTTGCLTGNFENSKNFLWMLKMQAEKTLNADTWNLWDR
>LR134365.1|VEG76864.1|967943_968207_+|Transposase-and-inactivated-derivatives
MPYPQAMRERAIAAHLEQGMKKIEVCRIFGIQRRTFDEWLRAYEKEGRTYAKAKYQQGHSHHVEDIEAFRLFLEEPPFNTIYDLHPL
>LR134365.1|VEG76865.1|968360_968564_+|Uncharacterised-protein
MGKEYFLYMDEADMLAGKRQRRVNFIAAVNGLGHFIEPLVFEGACTREIVESWLEALVEQLPRDGNG
>LR134365.1|VEG76866.1|968890_969808_-|DNA-gyrase-inhibitor
MFVDYRERLRPVIRYLEQHYREPLDLAVLAERAALSPYHFHRVYKAVTGETPAATVRRLRLENIARQLFFAANADITTLALEHGYASSQALAKAFRAHFGMTARDIRACRDFESWMQAMQNSKIGYLLHKNGHAAHAANGDTAPVINPQEQAMTTDMQTTTLAPCTVAYIRVTGEYGKNYEPATNRLYQWAGAHGLADGECLFIYLDSPEITPADKCRTDICLTVPDDTATGNGIEKRHLPGGSYALIRRSVTDPAQYRVYWEEIMSAVIAAQLEIDDRPCFEQYHHYDAATGKADVSFCVAVVL
>LR134365.1|VEG76867.1|969808_970588_-|Acyl-[acyl-carrier-protein]--UDP-N--acetylglucosamine-O-acyltransferase
MSQIHPTALIDPKAELDSDVSVGAYSVIGAGVQIGHGTTIAPHVVIEGPTRIGQNNHIFPFASLGAIPQDKKYGGEDTTLEIGDNNTIREFVTFNRGTVQDIGKTVLGDGNWIMAYVHLAHDCVIGNNTTFANNVILAGHVHIEDHVVMGGAAMVYQFVRIGAYTMVGYCAGVKQNVPPYSLVVESPARIAGINLEGLKRHHFSADDIAAIKRCHHHLYRENLLLDEARDKINALASESEPARRIAEFLENTGKRGLIR
>LR134365.1|VEG76868.1|970771_971251_-|(3R)-hydroxymyristoyl-[acyl-carrier-protein]-dehydratase
MNPSTAMDIEEIRRYLPHRYPFLLIDRITEVEIGSHIKAIKNVTANEPFFQGHFPGKAVMPGVLVIEAMAQAAGILGVKSGRRELGLSDEPEEDGIYFFVGIDKARFRRTVVPGDQLHLEIKIIRSRRGIWSFTAEARVDGTLVCEAEIMCTTAGRGGN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134365_3	3.1\|708310\|34\|LR134365\|CRISPRCasFinder,CRT	708310-708343	34	LR134365.1	1068715-1068748	1	0.971
LR134365_7	7.2\|2047817\|18\|LR134365\|CRT	2047817-2047834	18	LR134365.1	2047721-2047738	1	0.944
LR134365_7	7.2\|2047817\|18\|LR134365\|CRT	2047817-2047834	18	LR134365.1	2047889-2047906	1	0.944
LR134365_7	7.2\|2047817\|18\|LR134365\|CRT	2047817-2047834	18	LR134365.1	2245280-2245297	2	0.889

1. spacer 3.1|708310|34|LR134365|CRISPRCasFinder,CRT matches to position: 1068715-1068748, mismatch: 1, identity: 0.971

cattgacgcggcgcaagtcctcgccgacgcggcg	CRISPR spacer
cattgacgcggcgcaagtcctcgccgacacggcg	Protospacer
****************************.*****

2. spacer 7.2|2047817|18|LR134365|CRT matches to position: 2047721-2047738, mismatch: 1, identity: 0.944

caccaatcccggcaccaa	CRISPR spacer
caccaaccccggcaccaa	Protospacer
******.***********

3. spacer 7.2|2047817|18|LR134365|CRT matches to position: 2047889-2047906, mismatch: 1, identity: 0.944

caccaatcccggcaccaa	CRISPR spacer
caccaatcctggcaccaa	Protospacer
*********.********

4. spacer 7.2|2047817|18|LR134365|CRT matches to position: 2245280-2245297, mismatch: 2, identity: 0.889

caccaatcccggcaccaa	CRISPR spacer
caacaaacccggcaccaa	Protospacer
** *** ***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134365_2	2.4\|705600\|26\|LR134365\|PILER-CR	705600-705625	26	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	19312-19337	5	0.808
LR134365_2	2.3\|705532\|28\|LR134365\|PILER-CR	705532-705559	28	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	491692-491719	6	0.786
LR134365_2	2.4\|705600\|26\|LR134365\|PILER-CR	705600-705625	26	NZ_CP020444	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed4, complete sequence	96334-96359	6	0.769
LR134365_2	2.4\|705600\|26\|LR134365\|PILER-CR	705600-705625	26	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	517251-517276	6	0.769
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	NC_048053	Dickeya phage vB_DsoM_JA29, complete genome	243644-243676	6	0.818
LR134365_7	7.3\|2047853\|30\|LR134365\|CRT	2047853-2047882	30	KR093633	Moraxella phage Mcat9, complete genome	8467-8496	6	0.8
LR134365_7	7.3\|2047853\|30\|LR134365\|CRT	2047853-2047882	30	FM180578	Enterobacteria phage 2851, complete genome	51172-51201	6	0.8
LR134365_7	7.3\|2047853\|30\|LR134365\|CRT	2047853-2047882	30	NC_011356	Enterobacteria phage YYZ-2008, complete prophage genome	48042-48071	6	0.8
LR134365_7	7.3\|2047853\|30\|LR134365\|CRT	2047853-2047882	30	NC_049944	Stx2-converting phage Stx2a_WGPS8 proviral DNA, complete genome	48980-49009	6	0.8
LR134365_7	7.3\|2047853\|30\|LR134365\|CRT	2047853-2047882	30	FJ184280	Enterobacteria phage YYZ-2008, complete genome	48042-48071	6	0.8
LR134365_7	7.3\|2047853\|30\|LR134365\|CRT	2047853-2047882	30	AJ304858	Bacteriophage CP-1639 and chromosomal integration site	42858-42887	6	0.8
LR134365_7	7.3\|2047853\|30\|LR134365\|CRT	2047853-2047882	30	MT225100	Escherichia phage Lys8385Vzw, complete genome	18293-18322	6	0.8
LR134365_3	3.6\|708640\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	708640-708673	34	MN855690	Myoviridae sp. isolate 291, complete genome	3041-3074	7	0.794
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	NC_048053	Dickeya phage vB_DsoM_JA29, complete genome	244037-244069	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	LR877331	Klebsiella phage vB_KpnM_311F genome assembly, chromosome: 1	126401-126433	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MN101225	Klebsiella phage KPN1, complete genome	44329-44361	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MN101230	Klebsiella phage KPN6, complete genome	7598-7630	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH729874	Klebsiella phage KP179, complete genome	56566-56598	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	KY000080	Klebsiella phage KPV15, complete genome	112001-112033	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	NC_031087	Klebsiella phage vB_KpnM_KpV477, complete genome	105054-105086	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	CP062992	Klebsiella phage AShe-2020a, complete genome	46436-46468	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH389777	Dickeya phage vB_DsoM_JA11, complete genome	241941-241973	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH389777	Dickeya phage vB_DsoM_JA11, complete genome	245539-245571	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH460462	Dickeya phage vB_DsoM_JA33, complete genome	242058-242090	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH460462	Dickeya phage vB_DsoM_JA33, complete genome	245656-245688	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH460460	Dickeya phage vB_DsoM_JA13, complete genome	240802-240834	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH460460	Dickeya phage vB_DsoM_JA13, complete genome	244400-244432	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH460463	Dickeya phage vB_DsoM_AD1, complete genome	251055-251087	7	0.788
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	KY984068	Erwinia phage vB_EamM_Y3, complete genome	198806-198838	7	0.788
LR134365_7	7.1\|2047769\|30\|LR134365\|CRT	2047769-2047798	30	NZ_CP046906	Streptomyces sp. QHH-9511 plasmid unnamed, complete sequence	35601-35630	7	0.767
LR134365_7	7.3\|2047853\|30\|LR134365\|CRT	2047853-2047882	30	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	779477-779506	7	0.767
LR134365_1	1.2\|203411\|34\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203411-203444	34	NZ_LR134458	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 16, complete sequence	16503-16536	8	0.765
LR134365_1	1.6\|203687\|33\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203687-203719	33	NC_019733	Crinalium epipsammum PCC 9333 plasmid pCRI9333.01, complete sequence	36741-36773	8	0.758
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NZ_AP017899	Sphingopyxis sp. FD7 plasmid pSFD01, complete sequence	22607-22638	8	0.75
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NZ_CP012886	Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence	205391-205422	8	0.75
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1300993-1301024	8	0.75
LR134365_1	1.9\|203893\|33\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203893-203925	33	NZ_CP020005	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence	304792-304824	8	0.758
LR134365_3	3.5\|708575\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	708575-708607	33	NC_006628	Laribacter hongkongensis plasmid pHLHK8, complete sequence	285-317	8	0.758
LR134365_3	3.6\|708640\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	708640-708673	34	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	129743-129776	8	0.765
LR134365_3	3.7\|708706\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	708706-708739	34	MK977708	Mycobacterium phage Fulbright, complete genome	9653-9686	8	0.765
LR134365_3	3.7\|708706\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	708706-708739	34	MG099948	Mycobacterium phage Philonius, complete genome	9653-9686	8	0.765
LR134365_3	3.7\|708706\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	708706-708739	34	MH697593	Mycobacterium phage Tapioca, complete genome	9653-9686	8	0.765
LR134365_3	3.7\|708706\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	708706-708739	34	MG099936	Mycobacterium phage Andies, complete genome	9653-9686	8	0.765
LR134365_3	3.7\|708706\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	708706-708739	34	NC_031243	Mycobacterium phage Xeno, complete genome	9653-9686	8	0.765
LR134365_4	4.5\|962370\|32\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	962370-962401	32	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	893081-893112	8	0.75
LR134365_4	4.7\|962507\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	962507-962540	34	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	796965-796998	8	0.765
LR134365_4	4.14\|962993\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	962993-963025	33	NZ_CP048758	Campylobacter jejuni strain ZS006 plasmid pCJ6K-02, complete sequence	5377-5409	8	0.758
LR134365_4	4.19\|963339\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963339-963372	34	MT724048	Staphylococcus phage SAP3, partial genome	18540-18573	8	0.765
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH389777	Dickeya phage vB_DsoM_JA11, complete genome	220183-220215	8	0.758
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH389777	Dickeya phage vB_DsoM_JA11, complete genome	220309-220341	8	0.758
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH460462	Dickeya phage vB_DsoM_JA33, complete genome	220300-220332	8	0.758
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH460462	Dickeya phage vB_DsoM_JA33, complete genome	220426-220458	8	0.758
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	CP041325	Planomicrobium glaciei strain 46093 plasmid unnamed1, complete sequence	67273-67305	8	0.758
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	401480-401512	8	0.758
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	NC_010811	Ralstonia phage RSL1, complete genome	157911-157943	8	0.758
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MK524498	Mycobacterium phage Chill, complete genome	46024-46056	8	0.758
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	AB366653	Ralstonia phage RSL1 DNA, complete genome	157911-157943	8	0.758
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MK494102	Mycobacterium phage WaldoWhy, complete genome	46024-46056	8	0.758
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	JQ768459	Pseudomonas phage Lu11, complete genome	131345-131377	8	0.758
LR134365_7	7.1\|2047769\|30\|LR134365\|CRT	2047769-2047798	30	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	685644-685673	8	0.733
LR134365_7	7.1\|2047769\|30\|LR134365\|CRT	2047769-2047798	30	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	238270-238299	8	0.733
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NZ_CP015745	Shinella sp. HZN7 plasmid pShin-09, complete sequence	6451-6482	9	0.719
LR134365_3	3.1\|708310\|34\|LR134365\|CRISPRCasFinder,CRT	708310-708343	34	NZ_LR134455	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 13, complete sequence	184943-184976	9	0.735
LR134365_3	3.10\|708902\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	708902-708935	34	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	279445-279478	9	0.735
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	NC_048053	Dickeya phage vB_DsoM_JA29, complete genome	244007-244039	9	0.727
LR134365_7	7.1\|2047769\|30\|LR134365\|CRT	2047769-2047798	30	NC_008538	Arthrobacter sp. FB24 plasmid 2, complete sequence	100035-100064	9	0.7
LR134365_7	7.1\|2047769\|30\|LR134365\|CRT	2047769-2047798	30	NC_015147	Pseudarthrobacter phenanthrenivorans Sphe3 plasmid pASPHE302, complete sequence	59651-59680	9	0.7
LR134365_1	1.2\|203411\|34\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203411-203444	34	NZ_CP013744	Streptomyces sp. CdTB01 plasmid unnamed, complete sequence	85139-85172	10	0.706
LR134365_1	1.6\|203687\|33\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203687-203719	33	NC_030917	Gordonia phage OneUp, complete genome	22634-22666	10	0.697
LR134365_3	3.1\|708310\|34\|LR134365\|CRISPRCasFinder,CRT	708310-708343	34	NZ_LR134451	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence	201484-201517	10	0.706
LR134365_3	3.1\|708310\|34\|LR134365\|CRISPRCasFinder,CRT	708310-708343	34	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	239001-239034	10	0.706
LR134365_3	3.10\|708902\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	708902-708935	34	NZ_CP048637	Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence	325209-325242	10	0.706
LR134365_4	4.13\|962924\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	962924-962956	33	NZ_CP015988	Sphingobium sp. EP60837 plasmid pEP1, complete sequence	159154-159186	10	0.697
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MH051254	Mycobacterium phage Jabiru, complete genome	42020-42052	10	0.697
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	MG757156	Mycobacterium phage Cuke, complete genome	44895-44927	10	0.697
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	KY000034	Agrobacterium sp. strain C58PMP90 plasmid pTi_C58PMP90, complete sequence	111885-111916	11	0.656
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	KY000036	Agrobacterium sp. strain GV3101 plasmid pTi_GV3101, complete sequence	113150-113181	11	0.656
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NZ_CP032929	Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence	92158-92189	11	0.656
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NZ_AF010180	Agrobacterium fabrum str. C58 plasmid pTiC58, complete sequence	4002-4033	11	0.656
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NC_011984	Agrobacterium vitis S4 plasmid pAtS4c, complete sequence	146153-146184	11	0.656
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NC_011982	Agrobacterium vitis S4 plasmid pTiS4, complete sequence	87793-87824	11	0.656
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NC_003065	Agrobacterium fabrum str. C58 plasmid Ti, complete sequence	144750-144781	11	0.656
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NZ_KY000027	Agrobacterium rhizogenes strain CFBP2692 plasmid pTi_CFBP2692, complete sequence	127610-127641	11	0.656
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NZ_KY000031	Agrobacterium genomosp. 1 strain Tun198 plasmid pTi_Tun198, complete sequence	16181-16212	11	0.656
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NZ_KY000028	Agrobacterium genomosp. 1 strain CFBP2712 plasmid pTi_CFBP2712, complete sequence	106243-106274	11	0.656
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NZ_KY000075	Agrobacterium vitis strain CFBP2681 plasmid pTi_CFBP2681, complete sequence	64036-64067	11	0.656
LR134365_1	1.8\|203825\|32\|LR134365\|PILER-CR,CRISPRCasFinder,CRT	203825-203856	32	NZ_KY000051	Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence	165317-165348	11	0.656
LR134365_3	3.6\|708640\|34\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	708640-708673	34	NZ_CP021405	Celeribacter manganoxidans strain DY25 plasmid pDY25-A, complete sequence	28431-28464	11	0.676
LR134365_4	4.28\|963967\|33\|LR134365\|CRISPRCasFinder,CRT,PILER-CR	963967-963999	33	LR214966	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12	42713-42745	11	0.667

1. spacer 2.4|705600|26|LR134365|PILER-CR matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 5, identity: 0.808

cgcaccggcttgccttgatcgacata	CRISPR spacer
agcaccggcttgccttgttcgatgca	Protospacer
 **************** ****...*

2. spacer 2.3|705532|28|LR134365|PILER-CR matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

cgctgtgcgtgttgtcatcggtgagaat	CRISPR spacer
cgctgggcgtgttgtcatcggtggcgcg	Protospacer
***** *****************. .

3. spacer 2.4|705600|26|LR134365|PILER-CR matches to NZ_CP020444 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.769

cgcaccggcttgccttgatcgacata	CRISPR spacer
ggcaccggcttgccctgatcgaagct	Protospacer
 *************.******* ..

4. spacer 2.4|705600|26|LR134365|PILER-CR matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

cgcaccggcttgccttgatcgacata	CRISPR spacer
ttcaccggcttgcgttgatcgacggc	Protospacer
. *********** *********.

5. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NC_048053 (Dickeya phage vB_DsoM_JA29, complete genome) position: , mismatch: 6, identity: 0.818

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
gtctgacgaagatgaagacgacgaagacgagga	Protospacer
  .************* ************. **

6. spacer 7.3|2047853|30|LR134365|CRT matches to KR093633 (Moraxella phage Mcat9, complete genome) position: , mismatch: 6, identity: 0.8

caccaatccctgcaccaatccctgcaccaa	CRISPR spacer
aagtaagacctgctccaatccctgcaccaa	Protospacer
 * .**  ***** ****************

7. spacer 7.3|2047853|30|LR134365|CRT matches to FM180578 (Enterobacteria phage 2851, complete genome) position: , mismatch: 6, identity: 0.8

caccaatccctgcaccaatccctgcaccaa	CRISPR spacer
cctcaatccctgcaccaatcccggccacat	Protospacer
* .******************* **  **

8. spacer 7.3|2047853|30|LR134365|CRT matches to NC_011356 (Enterobacteria phage YYZ-2008, complete prophage genome) position: , mismatch: 6, identity: 0.8

caccaatccctgcaccaatccctgcaccaa	CRISPR spacer
cctcaatccctgcaccaatcccggccacat	Protospacer
* .******************* **  **

9. spacer 7.3|2047853|30|LR134365|CRT matches to NC_049944 (Stx2-converting phage Stx2a_WGPS8 proviral DNA, complete genome) position: , mismatch: 6, identity: 0.8

caccaatccctgcaccaatccctgcaccaa	CRISPR spacer
cctcaatccctgcaccaatcccggccacat	Protospacer
* .******************* **  **

10. spacer 7.3|2047853|30|LR134365|CRT matches to FJ184280 (Enterobacteria phage YYZ-2008, complete genome) position: , mismatch: 6, identity: 0.8

caccaatccctgcaccaatccctgcaccaa	CRISPR spacer
cctcaatccctgcaccaatcccggccacat	Protospacer
* .******************* **  **

11. spacer 7.3|2047853|30|LR134365|CRT matches to AJ304858 (Bacteriophage CP-1639 and chromosomal integration site) position: , mismatch: 6, identity: 0.8

caccaatccctgcaccaatccctgcaccaa	CRISPR spacer
cctcaatccctgcaccaatcccggccacat	Protospacer
* .******************* **  **

12. spacer 7.3|2047853|30|LR134365|CRT matches to MT225100 (Escherichia phage Lys8385Vzw, complete genome) position: , mismatch: 6, identity: 0.8

caccaatccctgcaccaatccctgcaccaa	CRISPR spacer
cctcaatccctgcaccaatcccggccacat	Protospacer
* .******************* **  **

13. spacer 3.6|708640|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MN855690 (Myoviridae sp. isolate 291, complete genome) position: , mismatch: 7, identity: 0.794

cttggcgatggacagggtgctggccgcg---ttggac	CRISPR spacer
catggcgctgggcagggtgctggccgcgaattta---	Protospacer
* ***** ***.****************   **.

14. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NC_048053 (Dickeya phage vB_DsoM_JA29, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
cgacgacgaagacgaagacgacgaagacgacga	Protospacer
*. .********.*** ************..**

15. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to LR877331 (Klebsiella phage vB_KpnM_311F genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaggacgaagatgaagacgacgaagacgaaga	Protospacer
..  ************ ************. **

16. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MN101225 (Klebsiella phage KPN1, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaggacgaagatgaagacgacgaagacgaaga	Protospacer
..  ************ ************. **

17. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MN101230 (Klebsiella phage KPN6, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaggacgaagatgaagacgacgaagacgaaga	Protospacer
..  ************ ************. **

18. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH729874 (Klebsiella phage KP179, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaggacgaagatgaagacgacgaagacgaaga	Protospacer
..  ************ ************. **

19. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to KY000080 (Klebsiella phage KPV15, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaggacgaagatgaagacgacgaagacgaaga	Protospacer
..  ************ ************. **

20. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NC_031087 (Klebsiella phage vB_KpnM_KpV477, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaggacgaagatgaagacgacgaagacgaaga	Protospacer
..  ************ ************. **

21. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to CP062992 (Klebsiella phage AShe-2020a, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaggacgaagatgaagacgacgaagacgaaga	Protospacer
..  ************ ************. **

22. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
agatggcgaagatgaagacgacgaagacgaaga	Protospacer
 . **.********** ************. **

23. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgatgacgaagaagaagacgacgaagacgaaga	Protospacer
.. ********* *** ************. **

24. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
agatggcgaagatgaagacgacgaagacgaaga	Protospacer
 . **.********** ************. **

25. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgatgacgaagaagaagacgacgaagacgaaga	Protospacer
.. ********* *** ************. **

26. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH460460 (Dickeya phage vB_DsoM_JA13, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
agatggcgaagatgaagacgacgaagacgaaga	Protospacer
 . **.********** ************. **

27. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH460460 (Dickeya phage vB_DsoM_JA13, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgatgacgaagaagaagacgacgaagacgaaga	Protospacer
.. ********* *** ************. **

28. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH460463 (Dickeya phage vB_DsoM_AD1, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
cgaagacgaagatgaagacgacgaagacttcga	Protospacer
*.  ************ ***********  .**

29. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to KY984068 (Erwinia phage vB_EamM_Y3, complete genome) position: , mismatch: 7, identity: 0.788

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
gctggacgatgatgaagacgacgaagacgaaga	Protospacer
  * ***** ****** ************. **

30. spacer 7.1|2047769|30|LR134365|CRT matches to NZ_CP046906 (Streptomyces sp. QHH-9511 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

caccaatcccggcaccaaccccggaacgaa	CRISPR spacer
caccaaccccgacaccaaccccgcgctcaa	Protospacer
******.****.*********** . . **

31. spacer 7.3|2047853|30|LR134365|CRT matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

caccaatccctgcaccaatccctgcaccaa	CRISPR spacer
gaggaatcgctgcaccaatacctgcacgag	Protospacer
 *  **** ********** ******* *.

32. spacer 1.2|203411|34|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134458 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 16, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcgcaggtcgaccacgtcccgtcggacatcgg	CRISPR spacer
ccgagggtgacgaccacggcccgtcggacatcgg	Protospacer
..* * . * ******** ***************

33. spacer 1.6|203687|33|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NC_019733 (Crinalium epipsammum PCC 9333 plasmid pCRI9333.01, complete sequence) position: , mismatch: 8, identity: 0.758

ttctcaaga-----acatcatcagcatccgcgatataa	CRISPR spacer
-----aaaaacttcacatcttcaacatccgcgatataa	Protospacer
     **.*     ***** ***.**************

34. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017899 (Sphingopyxis sp. FD7 plasmid pSFD01, complete sequence) position: , mismatch: 8, identity: 0.75

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
gctttgctggagttcttcgatcagttgctggg	Protospacer
* ****.*** *************** *   .

35. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012886 (Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
gtcaaggtgtcgttcttcgaccagttccatct	Protospacer
* .  * ** **********.**********

36. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.75

-gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
cgacccgcc-gcgttcctcgatcagttcgatca	Protospacer
 **...*.. ******.*********** ****

37. spacer 1.9|203893|33|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.758

ccatgggttttctcctgttttagaaaaagaaaa	CRISPR spacer
ctcatttttttctcccgttttagaagaagaaaa	Protospacer
*.     ********.*********.*******

38. spacer 3.5|708575|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NC_006628 (Laribacter hongkongensis plasmid pHLHK8, complete sequence) position: , mismatch: 8, identity: 0.758

ctccagtagcgcatgcctgctacctgcctcagc	CRISPR spacer
caccagtagcgcatgcctgttagctgcgtttta	Protospacer
* *****************.** **** *.

39. spacer 3.6|708640|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 8, identity: 0.765

cttggcgatggacagggtgctggccgcgttggac	CRISPR spacer
cctggcgatggagcgggtgctggccgacctggcg	Protospacer
*.**********  ************  .***

40. spacer 3.7|708706|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MK977708 (Mycobacterium phage Fulbright, complete genome) position: , mismatch: 8, identity: 0.765

tgtgtcgcaacgatgacgccaaaagcgaaacgcg	CRISPR spacer
tcaccgtcaacgaagacgccaaaaccgaaacgcg	Protospacer
*   .  ****** ********** *********

41. spacer 3.7|708706|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MG099948 (Mycobacterium phage Philonius, complete genome) position: , mismatch: 8, identity: 0.765

tgtgtcgcaacgatgacgccaaaagcgaaacgcg	CRISPR spacer
tcaccgtcaacgaagacgccaaaaccgaaacgcg	Protospacer
*   .  ****** ********** *********

42. spacer 3.7|708706|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH697593 (Mycobacterium phage Tapioca, complete genome) position: , mismatch: 8, identity: 0.765

tgtgtcgcaacgatgacgccaaaagcgaaacgcg	CRISPR spacer
tcaccgtcaacgaagacgccaaaaccgaaacgcg	Protospacer
*   .  ****** ********** *********

43. spacer 3.7|708706|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MG099936 (Mycobacterium phage Andies, complete genome) position: , mismatch: 8, identity: 0.765

tgtgtcgcaacgatgacgccaaaagcgaaacgcg	CRISPR spacer
tcaccgtcaacgaagacgccaaaaccgaaacgcg	Protospacer
*   .  ****** ********** *********

44. spacer 3.7|708706|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NC_031243 (Mycobacterium phage Xeno, complete genome) position: , mismatch: 8, identity: 0.765

tgtgtcgcaacgatgacgccaaaagcgaaacgcg	CRISPR spacer
tcaccgtcaacgaagacgccaaaaccgaaacgcg	Protospacer
*   .  ****** ********** *********

45. spacer 4.5|962370|32|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 8, identity: 0.75

tactaccgcagcgaagcgcggcaa--caacgggc	CRISPR spacer
gactaccgctgcgaagctcggcaaaccagcaa--	Protospacer
 ******** ******* ******  **.*..

46. spacer 4.7|962507|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.765

ttgacg-agattttcaggtttatcgagcggctttt	CRISPR spacer
-taatgccggttttcaggtttataaagcggctttg	Protospacer
 *.*.*  *.************* .*********

47. spacer 4.14|962993|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048758 (Campylobacter jejuni strain ZS006 plasmid pCJ6K-02, complete sequence) position: , mismatch: 8, identity: 0.758

tttccccatgattgaatttgcaattgttctttt	CRISPR spacer
aaaactcatgattatatttgcaattgttctttg	Protospacer
    *.*******. *****************

48. spacer 4.19|963339|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MT724048 (Staphylococcus phage SAP3, partial genome) position: , mismatch: 8, identity: 0.765

agaacagtatttcgatgatattttcaataactat	CRISPR spacer
agcaacgtatttcgatgctattttcaataaaacg	Protospacer
** *  *********** ************

49. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 8, identity: 0.758

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
agacgacgaagacgattacgacgaagacgaaga	Protospacer
 . .********.** *************. **

50. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH389777 (Dickeya phage vB_DsoM_JA11, complete genome) position: , mismatch: 8, identity: 0.758

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaagacgaagacgaagacgacgaagacgacga	Protospacer
..  ********.*** ************..**

51. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 8, identity: 0.758

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
agacgacgaagacgattacgacgaagacgaaga	Protospacer
 . .********.** *************. **

52. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH460462 (Dickeya phage vB_DsoM_JA33, complete genome) position: , mismatch: 8, identity: 0.758

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaagacgaagacgaagacgacgaagacgacga	Protospacer
..  ********.*** ************..**

53. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to CP041325 (Planomicrobium glaciei strain 46093 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
agtccgccaatatgaatacgaccaagacggtga	Protospacer
 .*. .* ** *********** **********

54. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 8, identity: 0.758

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaagacgaagatgaagaagacgaagacgaaga	Protospacer
..  ************ * **********. **

55. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NC_010811 (Ralstonia phage RSL1, complete genome) position: , mismatch: 8, identity: 0.758

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
cgatgacgaagatgaagacgaggaagaggaggc	Protospacer
*. ************* **** ***** *. *

56. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MK524498 (Mycobacterium phage Chill, complete genome) position: , mismatch: 8, identity: 0.758

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
ggacgacgaagacgaagacgacgaagacgacga	Protospacer
 . .********.*** ************..**

57. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to AB366653 (Ralstonia phage RSL1 DNA, complete genome) position: , mismatch: 8, identity: 0.758

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
cgatgacgaagatgaagacgaggaagaggaggc	Protospacer
*. ************* **** ***** *. *

58. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MK494102 (Mycobacterium phage WaldoWhy, complete genome) position: , mismatch: 8, identity: 0.758

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
ggacgacgaagacgaagacgacgaagacgacga	Protospacer
 . .********.*** ************..**

59. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to JQ768459 (Pseudomonas phage Lu11, complete genome) position: , mismatch: 8, identity: 0.758

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
cgatgacgaagacgaagacgacgaagatgatcg	Protospacer
*. *********.*** **********.*.* .

60. spacer 7.1|2047769|30|LR134365|CRT matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 8, identity: 0.733

caccaatcccggcaccaaccccggaacgaa	CRISPR spacer
caccattcccggcaccatccccggtgtcgg	Protospacer
***** *********** ****** .. ..

61. spacer 7.1|2047769|30|LR134365|CRT matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.733

caccaatcccggcaccaaccccggaacgaa	CRISPR spacer
aaccaaccccggccccaaccccggccccgg	Protospacer
 *****.****** **********  * ..

62. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015745 (Shinella sp. HZN7 plasmid pShin-09, complete sequence) position: , mismatch: 9, identity: 0.719

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
gatctggtggcgttcttcgatcaggcaagcct	Protospacer
***.** ***************** .  ..*

63. spacer 3.1|708310|34|LR134365|CRISPRCasFinder,CRT matches to NZ_LR134455 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 13, complete sequence) position: , mismatch: 9, identity: 0.735

cattgacgcggcgcaagtcctcgccgacgcggcg	CRISPR spacer
ggatgacgcggcgcaggtgctcgccgatctggtg	Protospacer
 . ************.** ********. .**.*

64. spacer 3.10|708902|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 9, identity: 0.735

aaatcgcgccccatgtagctgcggtagaagcgca	CRISPR spacer
tggctgacccccatgaagctgcggttgaagcgca	Protospacer
 ....*  ******* ********* ********

65. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NC_048053 (Dickeya phage vB_DsoM_JA29, complete genome) position: , mismatch: 9, identity: 0.727

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaagacgaagacgaagacgacgaagacttcga	Protospacer
..  ********.*** ***********  .**

66. spacer 7.1|2047769|30|LR134365|CRT matches to NC_008538 (Arthrobacter sp. FB24 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.7

caccaatcccggcaccaaccccggaacgaa	CRISPR spacer
ggaggatcccggcaccaacgccggaaacag	Protospacer
 .  .************** ******  *.

67. spacer 7.1|2047769|30|LR134365|CRT matches to NC_015147 (Pseudarthrobacter phenanthrenivorans Sphe3 plasmid pASPHE302, complete sequence) position: , mismatch: 9, identity: 0.7

caccaatcccggcaccaaccccggaacgaa	CRISPR spacer
ggaggatcccggcaccaacgccggaaacag	Protospacer
 .  .************** ******  *.

68. spacer 1.2|203411|34|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013744 (Streptomyces sp. CdTB01 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ttgcgcaggtcgaccacgtcccgtcggacatcgg	CRISPR spacer
cgctccaggtcgaccacgccccggcggacgaccg	Protospacer
.  . *************.**** *****. * *

69. spacer 1.6|203687|33|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NC_030917 (Gordonia phage OneUp, complete genome) position: , mismatch: 10, identity: 0.697

ttctcaagaacatcatcagcatccgcgatataa	CRISPR spacer
aggccaagaacatcatcggcatcctcgacaagt	Protospacer
   .*************.****** ***.* .

70. spacer 3.1|708310|34|LR134365|CRISPRCasFinder,CRT matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 10, identity: 0.706

cattgacgcggcgcaagtcctcgccgacgcggcg	CRISPR spacer
cgcgctgtcggcgcacgtcctcgtcgacgcggcc	Protospacer
*..     ******* *******.*********

71. spacer 3.1|708310|34|LR134365|CRISPRCasFinder,CRT matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 10, identity: 0.706

cattgacgcggcgcaagtcctcgccgacgcggcg	CRISPR spacer
ccggcagccggcgcaagccctcgccgacccgggc	Protospacer
*    *  *********.********** ***

72. spacer 3.10|708902|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048637 (Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence) position: , mismatch: 10, identity: 0.706

aaatcgcgccccatgtagctgcggtagaagcgca	CRISPR spacer
aggtcgcgcaccatgtaactgcggtagcccttga	Protospacer
*..****** *******.*********   .  *

73. spacer 4.13|962924|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015988 (Sphingobium sp. EP60837 plasmid pEP1, complete sequence) position: , mismatch: 10, identity: 0.697

ctggcgtaacggtgcgaaaccacaaccctaacc	CRISPR spacer
tgtatgtaacggtgcgaaacgacaacgctcgca	Protospacer
.  ..*************** ***** ** .*

74. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MH051254 (Mycobacterium phage Jabiru, complete genome) position: , mismatch: 10, identity: 0.697

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
aggagacatagatgaatacgacgaagacgaact	Protospacer
 .  ***. ********************.

75. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to MG757156 (Mycobacterium phage Cuke, complete genome) position: , mismatch: 10, identity: 0.697

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
tgaggacgaagacgaagacgacgaagacgagtc	Protospacer
..  ********.*** ************.

76. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to KY000034 (Agrobacterium sp. strain C58PMP90 plasmid pTi_C58PMP90, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcgatcc	Protospacer
  .. . .*********** ******* ***

77. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to KY000036 (Agrobacterium sp. strain GV3101 plasmid pTi_GV3101, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcgatcc	Protospacer
  .. . .*********** ******* ***

78. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032929 (Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcgatcc	Protospacer
  .. . .*********** ******* ***

79. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AF010180 (Agrobacterium fabrum str. C58 plasmid pTiC58, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcgatcc	Protospacer
  .. . .*********** ******* ***

80. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NC_011984 (Agrobacterium vitis S4 plasmid pAtS4c, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcgatcc	Protospacer
  .. . .*********** ******* ***

81. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NC_011982 (Agrobacterium vitis S4 plasmid pTiS4, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcgatcc	Protospacer
  .. . .*********** ******* ***

82. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NC_003065 (Agrobacterium fabrum str. C58 plasmid Ti, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcgatcc	Protospacer
  .. . .*********** ******* ***

83. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000027 (Agrobacterium rhizogenes strain CFBP2692 plasmid pTi_CFBP2692, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcgatcc	Protospacer
  .. . .*********** ******* ***

84. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000031 (Agrobacterium genomosp. 1 strain Tun198 plasmid pTi_Tun198, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcaatcc	Protospacer
  .. . .*********** ******* ***

85. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000028 (Agrobacterium genomosp. 1 strain CFBP2712 plasmid pTi_CFBP2712, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcgatcc	Protospacer
  .. . .*********** ******* ***

86. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000075 (Agrobacterium vitis strain CFBP2681 plasmid pTi_CFBP2681, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcgatcc	Protospacer
  .. . .*********** ******* ***

87. spacer 1.8|203825|32|LR134365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000051 (Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence) position: , mismatch: 11, identity: 0.656

gatttgttggcgttcttcgatcagttccatca	CRISPR spacer
ttccgagcggcgttcttcgttcagttcgatcc	Protospacer
  .. . .*********** ******* ***

88. spacer 3.6|708640|34|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021405 (Celeribacter manganoxidans strain DY25 plasmid pDY25-A, complete sequence) position: , mismatch: 11, identity: 0.676

cttggcgatggacagggtgctggccgcgttggac	CRISPR spacer
gctggcgctggaccgggtgctggccgatcatggt	Protospacer
 .***** ***** ************  .  *..

89. spacer 4.28|963967|33|LR134365|CRISPRCasFinder,CRT,PILER-CR matches to LR214966 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12) position: , mismatch: 11, identity: 0.667

cattgacgaagatgaatacgacgaagacggtga	CRISPR spacer
agatgacgaagatgaagacgaagaagaattaag	Protospacer
 . ************* **** *****    ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1040650 : 1124835

uncultured_Caudovirales_phage(12.9%)

terminase,capsid,coat,plate,tRNA,portal,integrase,head,tail,protease

attL 1033527:1033564|attR 1122209:1122246

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1033527:1033564	attL	NA	NA	NA	NA
VEG76933.1\|1040650_1041823_+\|integrase	Putative prophage CPS-53 integrase	A7X7X0	Dichelobacter_phage	1.2e-108	52.1
VEG76934.1\|1041773_1042049_-	Predicted transcriptional regulator	NA	NA	NA	NA
VEG76935.1\|1042045_1042237_-	Uncharacterised protein	NA	NA	NA	NA
VEG76936.1\|1042331_1042886_-	Uncharacterized protein conserved in bacteria	A0A2I7RG30	Vibrio_phage	4.4e-24	40.7
VEG76937.1\|1042932_1043202_-	Uncharacterised protein	NA	NA	NA	NA
VEG76938.1\|1043350_1043614_-	Uncharacterised protein	NA	NA	NA	NA
VEG76939.1\|1043610_1043925_-	Uncharacterised protein	NA	NA	NA	NA
VEG76940.1\|1044143_1046822_-	DNA primase (bacterial type)	A0A077K8T2	Ralstonia_phage	2.9e-206	41.6
VEG76941.1\|1046834_1047419_-	Ogr/Delta-like zinc finger	NA	NA	NA	NA
VEG76942.1\|1047790_1048057_-	Uncharacterised protein	NA	NA	NA	NA
VEG76943.1\|1048053_1048359_-	Uncharacterised protein	NA	NA	NA	NA
VEG76944.1\|1048355_1048535_-	Uncharacterised protein	NA	NA	NA	NA
VEG76945.1\|1048736_1049372_+	Uncharacterized HTH-type transcriptional regulator HI_1476	J7I0S2	Pseudomonas_phage	1.1e-18	35.5
VEG76946.1\|1049381_1049852_+	Uncharacterised protein	NA	NA	NA	NA
VEG76947.1\|1049854_1050514_+	SPBc2 prophage-derived endonuclease yokF precursor	A0A0R6PHV6	Moraxella_phage	5.8e-31	37.0
VEG76948.1\|1050869_1051391_+	Uncharacterised protein	NA	NA	NA	NA
VEG76949.1\|1051420_1051636_-	Uncharacterised protein	NA	NA	NA	NA
VEG76950.1\|1052075_1052399_-	Uncharacterised protein	NA	NA	NA	NA
VEG76951.1\|1052551_1053520_-	Phage protein D	E5G6Q3	Salmonella_phage	2.5e-62	39.8
VEG76952.1\|1053519_1053954_-	Phage protein U	A0A2H4JG54	uncultured_Caudovirales_phage	1.5e-27	48.4
VEG76953.1\|1053963_1056681_-\|tail	Phage-related minor tail protein	D4HTW4	Vibrio_phage	2.1e-10	23.1
VEG76954.1\|1056744_1056936_+	Uncharacterised protein	NA	NA	NA	NA
VEG76955.1\|1057124_1057448_-\|tail	Phage tail protein E	V9IQX8	Stenotrophomonas_phage	1.9e-11	45.2
VEG76956.1\|1057472_1057979_-\|tail	phage major tail tube protein	D4HTW2	Vibrio_phage	1.5e-26	39.3
VEG76957.1\|1057989_1059174_-\|tail	Phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	8.9e-131	60.0
VEG76958.1\|1059170_1059689_-	Uncharacterised protein	NA	NA	NA	NA
VEG76959.1\|1059685_1060213_-	Uncharacterised protein	NA	NA	NA	NA
VEG76960.1\|1060216_1061461_-	Uncharacterised protein	NA	NA	NA	NA
VEG76961.1\|1061555_1061825_-	Uncharacterised protein	NA	NA	NA	NA
VEG76962.1\|1061835_1063023_-	Uncharacterised protein	A0A1B2LRR4	Wolbachia_phage	3.0e-78	41.8
VEG76963.1\|1063025_1064963_-	Uncharacterised protein	K4ICQ5	Acidithiobacillus_phage	8.0e-145	43.8
VEG76964.1\|1064968_1065451_-	Uncharacterised protein	NA	NA	NA	NA
VEG76965.1\|1065450_1066332_-\|tail	Bacteriophage P2-related tail formation protein	NA	NA	NA	NA
VEG76966.1\|1066331_1067204_-	Uncharacterized homolog of phage Mu protein gp47	K4HZB7	Acidithiobacillus_phage	7.4e-50	45.6
VEG76967.1\|1067254_1067641_-	Gene 25-like lysozyme	A0A077K8R5	Ralstonia_phage	2.8e-17	44.9
VEG76968.1\|1067640_1067877_-	Uncharacterised protein	NA	NA	NA	NA
VEG76969.1\|1067873_1068386_-\|plate	Phage P2 baseplate assembly protein gpV	NA	NA	NA	NA
VEG76970.1\|1068382_1068832_-	Mu-like prophage protein gpG	A4PE39	Ralstonia_virus	1.8e-12	37.1
VEG76971.1\|1068840_1069254_-\|tail	P2 phage tail completion protein R (GpR)	A0A2H4J906	uncultured_Caudovirales_phage	5.9e-05	31.5
VEG76972.1\|1069237_1069447_-	conjugal transfer protein TraR	NA	NA	NA	NA
VEG76973.1\|1069558_1069978_-	Uncharacterised protein	NA	NA	NA	NA
VEG76974.1\|1069967_1070459_-	Phage-related lysozyme (muraminidase)	A0A141GEY9	Brucella_phage	4.6e-17	41.7
VEG76975.1\|1070418_1070847_-	Uncharacterised protein	NA	NA	NA	NA
VEG76976.1\|1070849_1071050_-	Phage Tail Protein X	NA	NA	NA	NA
VEG76977.1\|1071062_1071503_-\|head	Phage head completion protein (GPL)	NA	NA	NA	NA
VEG76978.1\|1071499_1071703_-	Predicted transcriptional regulator	NA	NA	NA	NA
VEG76979.1\|1071871_1072561_-\|terminase	Phage small terminase subunit	E5FFI5	Burkholderia_phage	3.6e-31	42.2
VEG76980.1\|1072564_1073581_-\|capsid	phage major capsid protein, P2 family	A0A1S5NPT2	Burkholderia_phage	1.1e-84	51.1
VEG76981.1\|1073590_1074370_-\|capsid	Phage capsid scaffolding protein (GPO) serine peptidase	A0A1S5NPS0	Burkholderia_phage	2.0e-46	44.2
VEG76982.1\|1074467_1076291_+	Uncharacterized conserved protein	E5FFI8	Burkholderia_phage	1.0e-170	49.6
VEG76983.1\|1076305_1077334_+\|portal	phage portal protein, PBSX family	A0A2H4J922	uncultured_Caudovirales_phage	5.6e-97	54.2
VEG76984.1\|1077398_1078226_-	Adenine-specific DNA methylase	F6MIM2	Haemophilus_phage	2.2e-80	51.3
VEG76985.1\|1079553_1081014_-\|tRNA	Glutamyl-tRNA(Gln) amidotransferase subunit A	NA	NA	NA	NA
VEG76986.1\|1081010_1081301_-\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	NA	NA	NA	NA
VEG76987.1\|1081404_1082454_+	Rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	7.9e-06	25.2
VEG76988.1\|1082479_1083421_+	rod shape-determining protein MreC	NA	NA	NA	NA
VEG76989.1\|1083407_1083893_+	rod shape-determining protein MreD	NA	NA	NA	NA
VEG76990.1\|1083889_1085779_+	Peptidoglycan synthase FtsI precursor	NA	NA	NA	NA
VEG76991.1\|1085762_1086902_+	Rod shape-determining protein RodA	NA	NA	NA	NA
VEG76992.1\|1086898_1087906_+	Membrane-bound lytic murein transglycosylase B precursor	NA	NA	NA	NA
VEG76993.1\|1087902_1088574_+	RlpA-like protein precursor	F5B3X9	Synechococcus_phage	2.7e-23	59.6
VEG76994.1\|1088582_1089707_+	D-alanyl-D-alanine carboxypeptidase dacC precursor	B6DZZ7	Stx2-converting_phage	8.3e-62	38.9
VEG76995.1\|1089706_1090327_+	Octanoyltransferase	NA	NA	NA	NA
VEG76996.1\|1090378_1090627_+	50S ribosomal protein L31 type B	NA	NA	NA	NA
VEG76997.1\|1091220_1092582_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEG76998.1\|1093047_1093383_-	Haemolysin-type calcium binding protein related domain	NA	NA	NA	NA
VEG76999.1\|1093572_1093968_+	Uncharacterised protein	NA	NA	NA	NA
VEG77000.1\|1094753_1096475_-	Cyclolysin	NA	NA	NA	NA
VEG77001.1\|1096529_1096826_+	Uncharacterised protein	NA	NA	NA	NA
VEG77002.1\|1097053_1097584_-	Uncharacterised protein	NA	NA	NA	NA
VEG77003.1\|1097651_1097777_+	Uncharacterised protein	NA	NA	NA	NA
VEG77004.1\|1097921_1099130_-	Uncharacterised protein	NA	NA	NA	NA
VEG77005.1\|1099132_1100107_-	Uncharacterised protein	NA	NA	NA	NA
VEG77006.1\|1100509_1101970_-	Outer membrane protein tolC precursor	NA	NA	NA	NA
VEG77007.1\|1101972_1103406_-	Hemolysin secretion protein D, plasmid	NA	NA	NA	NA
VEG77008.1\|1103468_1105538_-	RTX-I toxin determinant B	W8CYL7	Bacillus_phage	5.7e-48	27.9
VEG77009.1\|1106094_1107201_+	Uncharacterised protein	NA	NA	NA	NA
VEG77010.1\|1107222_1111614_+	Cyclolysin	A0A2H4JEI4	uncultured_Caudovirales_phage	1.8e-19	36.4
VEG77011.1\|1112192_1113605_-	D-alanyl-D-alanine carboxypeptidase dacC precursor	NA	NA	NA	NA
VEG77012.1\|1113676_1114237_+	Protein of uncharacterised function (DUF615)	NA	NA	NA	NA
VEG77013.1\|1114279_1115179_-	50S ribosomal protein L3 glutamine methyltransferase	NA	NA	NA	NA
VEG77014.1\|1115235_1116363_+	pheromone autoinducer 2 transporter	NA	NA	NA	NA
VEG77015.1\|1116359_1117112_+	Probable phospholipid-binding lipoprotein mlaA precursor	NA	NA	NA	NA
VEG77016.1\|1117071_1118040_+	Putative ribosome biogenesis GTPase RsgA	NA	NA	NA	NA
VEG77017.1\|1118039_1118306_+	Uncharacterised protein	NA	NA	NA	NA
VEG77018.1\|1118501_1118732_+	Exodeoxyribonuclease 7 small subunit	NA	NA	NA	NA
VEG77019.1\|1118728_1119532_+	Bicarbonate transport system permease protein CmpB	NA	NA	NA	NA
VEG77020.1\|1119540_1120242_+	Aliphatic sulfonates import ATP-binding protein SsuB	G3M9Y6	Bacillus_virus	4.6e-26	36.9
VEG77021.1\|1120241_1121003_+	Dam-replacing family	A0A2P0QEG9	Haloarcula_hispanica_pleomorphic_virus	2.0e-06	48.8
VEG77022.1\|1121034_1122171_+	NnrS protein	NA	NA	NA	NA
VEG77023.1\|1122382_1123492_-\|coat	Spore coat polysaccharide biosynthesis protein spsA	NA	NA	NA	NA
1122209:1122246	attR	NA	NA	NA	NA
VEG77024.1\|1123593_1124241_+	vancomycin high temperature exclusion protein	NA	NA	NA	NA
VEG77025.1\|1124295_1124835_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_2

1371628 : 1415343

Bacillus_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG77264.1\|1371628_1372339_+\|tRNA	tRNA (cmo5U34)-methyltransferase	NA	NA	NA	NA
VEG77265.1\|1372343_1373303_+\|tRNA	tRNA (mo5U34)-methyltransferase	NA	NA	NA	NA
VEG77266.1\|1373439_1374669_-	Thiol:disulfide interchange protein DsbC precursor	NA	NA	NA	NA
VEG77267.1\|1374761_1375604_-	Tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	1.4e-29	30.7
VEG77268.1\|1375653_1376988_+	ABC-type uncharacterized transport system	NA	NA	NA	NA
VEG77269.1\|1377061_1377529_+	Uncharacterised protein	NA	NA	NA	NA
VEG77270.1\|1377577_1378396_+	Formamidopyrimidine-DNA glycosylase	W5S5H6	Pithovirus	4.6e-09	25.2
VEG77271.1\|1378621_1379926_+	ATP-dependent RNA helicase rhlE	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.9e-47	33.2
VEG77272.1\|1380228_1380903_-	Inner membrane protein yebE	NA	NA	NA	NA
VEG77273.1\|1380958_1381462_+\|protease	Predicted aspartyl protease	NA	NA	NA	NA
VEG77274.1\|1381781_1383158_+\|protease	Uncharacterized metalloprotease yggG	NA	NA	NA	NA
VEG77275.1\|1383222_1383531_+	H-NS histone family	NA	NA	NA	NA
VEG77276.1\|1383598_1384006_+	purine nucleoside phosphoramidase	NA	NA	NA	NA
VEG77277.1\|1384020_1384893_+	Bifunctional protein FolD	A0A249XZQ2	Enterococcus_phage	7.2e-29	37.2
VEG77278.1\|1384933_1385461_+	Flavodoxin	NA	NA	NA	NA
VEG77279.1\|1385520_1385718_+	Uncharacterized conserved small protein	NA	NA	NA	NA
VEG77280.1\|1385717_1386323_+	Putative acetyltransferase SA2342	NA	NA	NA	NA
VEG77281.1\|1386343_1386829_+	Uncharacterised protein	NA	NA	NA	NA
VEG77282.1\|1386870_1387860_+	Tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
VEG77283.1\|1387952_1390013_+	ATP-dependent DNA helicase recG	NA	NA	NA	NA
VEG77284.1\|1390135_1390717_+	Modulator of drug activity B	NA	NA	NA	NA
VEG77285.1\|1390757_1391612_+	Transferrin binding protein-like solute binding protein	NA	NA	NA	NA
VEG77286.1\|1391621_1392122_+	Uncharacterised protein	NA	NA	NA	NA
VEG77287.1\|1392130_1393156_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
VEG77288.1\|1393228_1393729_+	Probable ferritin-1	NA	NA	NA	NA
VEG77289.1\|1393781_1395356_-	Na+/alanine symporter	NA	NA	NA	NA
VEG77290.1\|1395535_1396405_-	Uncharacterized protein/domain associated with GTPases	NA	NA	NA	NA
VEG77291.1\|1396850_1398362_-	GTP-binding protein YsxC	NA	NA	NA	NA
VEG77292.1\|1398358_1398766_-	acyl-CoA thioesterase YbgC	NA	NA	NA	NA
VEG77293.1\|1399208_1399865_-	UGMP family protein	NA	NA	NA	NA
VEG77294.1\|1399861_1401850_-	Probable ATP-dependent helicase dinG homolog	A0A127AW80	Bacillus_phage	2.3e-83	30.5
VEG77295.1\|1401851_1402829_-	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
VEG77296.1\|1403041_1405444_-	Murein polymerase	NA	NA	NA	NA
VEG77297.1\|1405465_1406242_-	Thymidylate synthase	A0A1B3AY68	Gordonia_phage	3.1e-100	68.3
VEG77298.1\|1406225_1407011_-	Prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
VEG77299.1\|1407204_1407549_+	Uncharacterized conserved protein, contains double-stranded beta-helix domain	NA	NA	NA	NA
VEG77300.1\|1407596_1408295_-\|protease	Putative Zn-dependent protease, contains TPR repeats	NA	NA	NA	NA
VEG77301.1\|1408449_1409397_-	Transaldolase	A0A127KNC6	Cyanophage	1.5e-11	31.1
VEG77302.1\|1409409_1409955_-	Uncharacterized protein conserved in bacteria	K4F6C9	Cronobacter_phage	9.4e-11	33.3
VEG77303.1\|1409960_1410263_-	Ascorbate-specific phosphotransferase enzyme IIB component	NA	NA	NA	NA
VEG77304.1\|1410520_1410832_-	NS1	A7KV42	Bacillus_phage	4.0e-22	62.9
VEG77305.1\|1411038_1413426_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.1e-196	48.0
VEG77306.1\|1413443_1414691_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.6e-128	55.2
VEG77307.1\|1414722_1415343_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.2e-57	57.9

DBSCAN-SWA_3

1626178 : 1731940

Burkholderia_phage(15.15%)

terminase,capsid,plate,tRNA,portal,integrase,head,tail,protease

attL 1615661:1615680|attR 1731300:1731319

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1615661:1615680	attL	NA	NA	NA	NA
VEG77496.1\|1626178_1628461_+\|protease	ATP-dependent zinc metalloprotease FtsH	G9E6G3	Micromonas_pusilla_virus	5.3e-31	39.3
VEG77497.1\|1628591_1629146_+	D-ribose-binding periplasmic protein precursor	NA	NA	NA	NA
VEG77498.1\|1629478_1630396_+	Ribokinase	NA	NA	NA	NA
VEG77499.1\|1630488_1631532_+	Nitronate monooxygenase	NA	NA	NA	NA
VEG77500.1\|1631700_1632630_-	Uncharacterised protein	NA	NA	NA	NA
VEG77501.1\|1632800_1636556_-	Exodeoxyribonuclease V gamma chain	NA	NA	NA	NA
VEG77502.1\|1636651_1637587_+	putative transporter YfdV	NA	NA	NA	NA
VEG77503.1\|1637639_1639436_-	Uncharacterized peptidase SA1530	A0A0P0I8D7	Acinetobacter_phage	9.3e-164	50.4
VEG77504.1\|1639557_1641138_-	Di-/tripeptide transporter	A0A0P0IY73	Acinetobacter_phage	4.2e-59	35.0
VEG77505.1\|1641523_1642558_+	2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
VEG77506.1\|1642820_1643852_+	2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
VEG77507.1\|1643957_1645997_+	Sulfate transport system permease protein CysW	NA	NA	NA	NA
VEG77508.1\|1646014_1647085_+	Spermidine/putrescine import ATP-binding protein PotA	G3M9Y6	Bacillus_virus	1.6e-30	35.8
VEG77509.1\|1647148_1648060_-	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	NA	NA	NA	NA
VEG77510.1\|1648322_1651127_-	Glutamate-ammonia-ligase adenylyltransferase	NA	NA	NA	NA
VEG77511.1\|1651235_1653278_-	oligopeptide transporter, OPT family	NA	NA	NA	NA
VEG77512.1\|1653403_1654294_+\|protease	Uncharacterized metalloprotease yggG	NA	NA	NA	NA
VEG77513.1\|1654575_1655040_+	Bacterioferritin	NA	NA	NA	NA
VEG77514.1\|1655049_1655529_+	Bacterioferritin	NA	NA	NA	NA
VEG77515.1\|1655685_1656915_+	Uracil transporter	NA	NA	NA	NA
VEG77516.1\|1656995_1657718_+	Putative NAD(P)H nitroreductase mhqN	NA	NA	NA	NA
VEG77517.1\|1657854_1659135_-	Sensor protein qseC	NA	NA	NA	NA
VEG77518.1\|1659131_1659809_-	Transcriptional regulatory protein BasR	Q6XM27	Feldmannia_irregularis_virus	1.5e-05	28.3
VEG77519.1\|1660039_1660675_-	Peptidase propeptide and YPEB domain	NA	NA	NA	NA
VEG77520.1\|1660764_1662132_-	H(+)/Cl(-) exchange transporter ClcA	NA	NA	NA	NA
VEG77521.1\|1662305_1670558_+	Endo-1,3-1,4-beta-glycanase ExsH	A0A0F6YR57	Sinorhizobium_phage	4.3e-06	46.3
VEG77522.1\|1670734_1671058_-	Uncharacterised protein	NA	NA	NA	NA
VEG77523.1\|1671451_1672423_-	Ferric-pseudobactin 358 receptor precursor	NA	NA	NA	NA
VEG77524.1\|1672858_1673392_-	Uncharacterised protein	NA	NA	NA	NA
VEG77525.1\|1673403_1673943_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEG77526.1\|1673939_1674293_-	Arsenate reductase	NA	NA	NA	NA
VEG77527.1\|1674392_1675115_+	NADPH-flavin oxidoreductase	NA	NA	NA	NA
VEG77528.1\|1675111_1675387_+	Uncharacterised protein	NA	NA	NA	NA
VEG77529.1\|1675440_1676517_+	PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK	NA	NA	NA	NA
VEG77530.1\|1676513_1677140_+	PTS-dependent dihydroxyacetone kinase, ADP-binding subunit dhaL	NA	NA	NA	NA
VEG77531.1\|1677139_1677607_+	Uncharacterised protein	NA	NA	NA	NA
VEG77532.1\|1677634_1679248_-	Putative sulfate transporter ychM	A0A2H4J153	uncultured_Caudovirales_phage	1.1e-38	27.0
VEG77533.1\|1680268_1681069_+\|integrase	Putative prophage CPS-53 integrase	Q7M297	Enterobacteria_phage	5.4e-47	37.8
VEG77534.1\|1681061_1681301_-	Uncharacterised protein	NA	NA	NA	NA
VEG77535.1\|1681325_1681868_-	Uncharacterised protein	NA	NA	NA	NA
VEG77536.1\|1682028_1682265_-	Uncharacterised protein	NA	NA	NA	NA
VEG77537.1\|1682275_1682605_-	Uncharacterised protein	NA	NA	NA	NA
VEG77538.1\|1682777_1682963_-	Uncharacterised protein	NA	NA	NA	NA
VEG77539.1\|1682979_1685667_-	DNA primase (bacterial type)	A0A077K8T2	Ralstonia_phage	3.0e-211	43.0
VEG77540.1\|1685678_1686236_-	Ogr/Delta-like zinc finger	NA	NA	NA	NA
VEG77541.1\|1686232_1686565_-	Uncharacterised protein	NA	NA	NA	NA
VEG77542.1\|1686512_1686779_-	Uncharacterised protein	NA	NA	NA	NA
VEG77543.1\|1686775_1687081_-	Uncharacterised protein	NA	NA	NA	NA
VEG77544.1\|1687077_1687257_-	Uncharacterised protein	NA	NA	NA	NA
VEG77545.1\|1687528_1687918_+	Uncharacterised protein	NA	NA	NA	NA
VEG77546.1\|1687918_1688488_+	Uncharacterised protein	NA	NA	NA	NA
VEG77547.1\|1688490_1689240_+	Uncharacterised protein	NA	NA	NA	NA
VEG77548.1\|1689287_1690373_+	Uncharacterised protein	Q6SE88	Lactobacillus_prophage	1.6e-62	38.6
VEG77549.1\|1690799_1691771_-	Phage protein D	E5G6Q3	Salmonella_phage	1.8e-57	38.0
VEG77550.1\|1691770_1692205_-	Phage protein U	A0A2H4JG54	uncultured_Caudovirales_phage	4.0e-28	50.0
VEG77551.1\|1692217_1694917_-\|tail	phage tail tape measure protein, TP901 family, core region	Q9AYV8	Lactococcus_phage	8.5e-12	24.5
VEG77552.1\|1694976_1695228_+	Uncharacterised protein	NA	NA	NA	NA
VEG77553.1\|1695437_1695743_-\|tail	Phage tail protein E	A0A2H4J944	uncultured_Caudovirales_phage	4.8e-12	47.4
VEG77554.1\|1695758_1696265_-\|tail	phage major tail tube protein	D4HTW2	Vibrio_phage	1.5e-26	37.4
VEG77555.1\|1696274_1697459_-\|tail	Phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	5.8e-130	60.3
VEG77556.1\|1697455_1697974_-	Uncharacterised protein	NA	NA	NA	NA
VEG77557.1\|1697970_1698495_-	Uncharacterised protein	NA	NA	NA	NA
VEG77558.1\|1698503_1699865_-	Uncharacterised protein	NA	NA	NA	NA
VEG77559.1\|1699866_1700136_-	Uncharacterised protein	NA	NA	NA	NA
VEG77560.1\|1700143_1701328_-	Uncharacterised protein	A0A1B2LRR4	Wolbachia_phage	5.0e-81	42.5
VEG77561.1\|1701324_1703256_-	Uncharacterised protein	K4ICQ5	Acidithiobacillus_phage	2.1e-153	45.5
VEG77562.1\|1703261_1703744_-	Uncharacterised protein	NA	NA	NA	NA
VEG77563.1\|1703743_1704628_-\|tail	Bacteriophage P2-related tail formation protein	K4I1F8	Acidithiobacillus_phage	3.3e-29	40.3
VEG77564.1\|1704627_1705467_-	Uncharacterized homolog of phage Mu protein gp47	K4HZB7	Acidithiobacillus_phage	1.1e-53	46.0
VEG77565.1\|1705536_1705902_-	Gene 25-like lysozyme	A0A077K8R5	Ralstonia_phage	1.0e-16	45.8
VEG77566.1\|1705937_1706450_-\|plate	Phage P2 baseplate assembly protein gpV	NA	NA	NA	NA
VEG77567.1\|1706446_1706908_-	Mu-like prophage protein gpG	K4NZQ8	Burkholderia_phage	3.0e-18	38.7
VEG77568.1\|1706904_1707402_-\|tail	P2 phage tail completion protein R (GpR)	NA	NA	NA	NA
VEG77569.1\|1707631_1708057_-	Uncharacterised protein	NA	NA	NA	NA
VEG77570.1\|1708046_1708538_-	Phage-related lysozyme (muraminidase)	A0A075DXC6	Acinetobacter_phage	8.8e-16	35.4
VEG77571.1\|1708534_1708927_-	Uncharacterised protein	A0A0P0IVR6	Acinetobacter_phage	3.4e-10	33.6
VEG77572.1\|1708929_1709139_-	Phage Tail Protein X	NA	NA	NA	NA
VEG77573.1\|1709153_1709588_-\|head	Phage head completion protein (GPL)	NA	NA	NA	NA
VEG77574.1\|1709755_1710427_-\|terminase	Phage small terminase subunit	E5FFI5	Burkholderia_phage	3.1e-32	40.0
VEG77575.1\|1710430_1711447_-\|capsid	phage major capsid protein, P2 family	A0A1S5NPT2	Burkholderia_phage	4.8e-85	52.7
VEG77576.1\|1711459_1712236_-\|capsid	Phage capsid scaffolding protein (GPO) serine peptidase	A0A1S5NPS0	Burkholderia_phage	3.5e-43	43.5
VEG77577.1\|1712370_1714158_+	Uncharacterized conserved protein	E5FFI8	Burkholderia_phage	3.7e-165	49.5
VEG77578.1\|1714166_1715165_+\|portal	phage portal protein, PBSX family	A0A2H4J922	uncultured_Caudovirales_phage	2.9e-98	53.9
VEG77579.1\|1715192_1716050_-	P22_AR N-terminal domain	A0A0M3LR56	Mannheimia_phage	4.9e-22	37.7
VEG77580.1\|1716063_1716291_-	Uncharacterised protein	NA	NA	NA	NA
VEG77581.1\|1717903_1718851_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEG77582.1\|1718860_1719637_-	Nucleotidyltransferase domain	NA	NA	NA	NA
VEG77583.1\|1720188_1723260_-	Type-1 restriction enzyme R protein	A0A220A398	Liberibacter_phage	3.9e-21	23.3
VEG77584.1\|1723246_1724218_-	EcoKI restriction-modification system protein HsdS	NA	NA	NA	NA
VEG77585.1\|1724643_1727025_-	Probable type I restriction enzyme BthVORF4518P M protein	NA	NA	NA	NA
VEG77586.1\|1727036_1728770_-	Uncharacterized conserved protein	NA	NA	NA	NA
VEG77587.1\|1728736_1729393_-	Phosphoserine aminotransferase	M1Q1P2	Streptococcus_phage	4.7e-25	42.0
VEG77588.1\|1729441_1730077_-	Uncharacterized conserved protein	NA	NA	NA	NA
VEG77589.1\|1730073_1730862_-	Uncharacterised protein	NA	NA	NA	NA
VEG77590.1\|1730875_1731940_-\|tRNA	tRNA (uracil(54)-C(5))-methyltransferase	A0A2K5B251	Erysipelothrix_phage	6.1e-14	32.3
1731300:1731319	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2111155 : 2122367

Bacillus_phage(16.67%)

tRNA,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG77943.1\|2111155_2113321_-	Alginate biosynthesis sensor protein kinB	W8CYF6	Bacillus_phage	2.7e-08	26.2
VEG77944.1\|2113634_2114609_+	Transposase and inactivated derivatives, IS30 family	W5R8L2	Staphylococcus_phage	2.8e-58	41.7
VEG77945.1\|2114809_2116066_-	Ribosomal RNA small subunit methyltransferase B	NA	NA	NA	NA
VEG77946.1\|2116062_2116995_-\|tRNA	Methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	6.1e-10	39.5
VEG77947.1\|2116991_2117546_-	Peptide deformylase	E3SLL2	Synechococcus_phage	1.8e-17	36.3
VEG77948.1\|2117677_2118862_+\|coat	spore coat assembly protein SafA	NA	NA	NA	NA
VEG77949.1\|2118861_2119971_+	DNA protecting protein DprA	S6BFL3	Thermus_phage	7.5e-31	39.3
VEG77950.1\|2119994_2122367_+	DNA topoisomerase 1	A0A1V0SB35	Catovirus	8.9e-114	33.5

DBSCAN-SWA_5

2174723 : 2186899

Burkholderia_virus(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG77989.1\|2174723_2175806_+	Predicted ATPase	A0A077SLJ9	Escherichia_phage	2.4e-13	24.1
VEG77990.1\|2175805_2176453_+	Uncharacterised protein	NA	NA	NA	NA
VEG77991.1\|2176867_2177854_-	alkanesulfonate transporter substrate-binding subunit	NA	NA	NA	NA
VEG77992.1\|2177990_2178572_-	Phosphoribosylglycinamide formyltransferase	A4JWM2	Burkholderia_virus	1.3e-47	50.7
VEG77993.1\|2178568_2179681_-	cytochrome c biogenesis protein CcmA	A4JWM1	Burkholderia_virus	3.3e-143	67.4
VEG77994.1\|2179677_2179815_-	Uncharacterised protein	A4JWM0	Burkholderia_virus	1.7e-06	50.0
VEG77995.1\|2179789_2179975_-	Mu-like prophage protein Com	NA	NA	NA	NA
VEG77996.1\|2180195_2180576_-	Uncharacterised protein	NA	NA	NA	NA
VEG77997.1\|2180572_2180971_-	Mu-like prophage protein gp16	F8TVB3	EBPR_siphovirus	2.4e-11	36.7
VEG77998.1\|2180973_2181147_-	Uncharacterised protein	NA	NA	NA	NA
VEG77999.1\|2181497_2181977_-	Uncharacterised protein	A0A2H4JFV8	uncultured_Caudovirales_phage	1.3e-40	55.3
VEG78000.1\|2181973_2182258_-	Uncharacterised protein	NA	NA	NA	NA
VEG78001.1\|2182254_2182617_-	Uncharacterised protein	NA	NA	NA	NA
VEG78002.1\|2182613_2182784_-	Uncharacterised protein	NA	NA	NA	NA
VEG78003.1\|2182780_2183293_-	Mu-like prophage host-nuclease inhibitor protein Gam	L7P7T1	Pseudomonas_phage	1.4e-40	55.7
VEG78004.1\|2183328_2183820_-	Uncharacterised protein	NA	NA	NA	NA
VEG78005.1\|2183816_2184023_-	Uncharacterised protein	NA	NA	NA	NA
VEG78006.1\|2184032_2185142_-	Predicted ATPase (AAA+ superfamily)	A4JWN1	Burkholderia_virus	1.0e-64	39.9
VEG78007.1\|2185138_2186899_-	Integrase core domain	Q6QIE0	Burkholderia_phage	4.0e-79	34.4

DBSCAN-SWA_6

2192593 : 2202385

Burkholderia_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG78018.1\|2192593_2193541_-	Uncharacterised protein	R9U4B8	Rhizobium_phage	1.3e-55	40.8
VEG78019.1\|2193550_2193871_-	Uncharacterised protein	NA	NA	NA	NA
VEG78020.1\|2193874_2194945_-	Uncharacterised protein	Q6QIB7	Burkholderia_phage	2.6e-36	33.4
VEG78021.1\|2195094_2195547_-	Mu-like prophage protein gpG	R9U1C4	Rhizobium_phage	3.5e-19	47.4
VEG78022.1\|2195685_2196957_-	Phage Mu protein F like protein	J9STS2	Pseudomonas_phage	1.8e-81	63.7
VEG78023.1\|2196953_2198402_-	Mu-like prophage protein gp29	Q5ZQY4	Pseudomonas_phage	2.7e-81	40.6
VEG78024.1\|2198404_2199841_-	Mu-like prophage FluMu protein gp28	Q6QIC1	Burkholderia_phage	1.2e-150	59.6
VEG78025.1\|2199842_2200382_-	Protein of uncharacterised function (DUF3486)	M4MCR3	Vibrio_phage	2.0e-21	34.6
VEG78026.1\|2200381_2200702_-	Uncharacterised protein	NA	NA	NA	NA
VEG78027.1\|2200698_2201049_-	Protein of uncharacterised function (DUF2730)	NA	NA	NA	NA
VEG78028.1\|2201035_2201248_-	conjugal transfer protein TraR	B5TA71	Burkholderia_phage	7.9e-06	51.7
VEG78029.1\|2201217_2201481_-	Uncharacterised protein	NA	NA	NA	NA
VEG78030.1\|2201477_2201780_-	Uncharacterised protein	NA	NA	NA	NA
VEG78031.1\|2201767_2202385_-	membrane-bound lytic transglycosylase F	Q6QIC7	Burkholderia_phage	1.9e-47	53.1

Anti-CRISPR protein detection

Acr_ID: LR134365.1|VEG76939.1|1043610_1043925_-|Uncharacterised-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR134365.1|VEG76939.1|1043610_1043925_-|Uncharacterised-protein

1043610_1043925_-

104 aa aa

1040650-1124835

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LR134365_3	TypeI	3.1\|708310\|34\|LR134365\|CRISPRCasFinder,CRT	708310-708343	34	1068715-1068748	1

1. spacer 3.1|708310|34|LR134365|CRISPRCasFinder,CRT matches to LR134365 position: 1068715-1068748, mismatch: 1

cattgacgcggcgcaagtcctcgccgacgcggcg	CRISPR spacer
cattgacgcggcgcaagtcctcgccgacacggcg	Protospacer
****************************.*****

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134365

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information