CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134369	Bifidobacterium longum strain NCTC11818 genome assembly, chromosome: 1	2 crisprs	cas3,c2c9_V-U4,cas14i,DEDDh,WYL,casR	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134369_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134369_2

301823-301908

Orphan

Consensus_repeat	Method
GACAGCTCCCGCCAGCGGGAGCACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134369_2

>merge|LR134369|2|301823-301908|CRISPRCasFinder
GACAGCTCCCGCCAGCGGGAGCACTTATTTGTAGGGAAATTCTCCAGTTCAAATCCGTTAGACAGCTCCCGCCAGCGGGAGCCTTT

>LR134369|2|2|301823-301908|CRISPRCasFinder
GACAGCTCCCGCCAGCGGGAGCACTT	ATTTGTAGGGAAATTCTCCAGTTCAAATCCGTTA
GACAGCTCCCGCCAGCGGGAGCCTTT

Protein	Signature genes	Signature genes Name	Protein_function
LR134369.1\|VEG78632.1\|289323_291003_+\|ptsa	unknown	unknown	gnl\|CDD\|224006
LR134369.1\|VEG78635.1\|294874_295156_+\|nrea	unknown	unknown	gnl\|CDD\|224848
LR134369.1\|VEG78645.1\|305657_307271_+\|monoamine-oxidase	unknown	unknown	gnl\|CDD\|235967
LR134369.1\|VEG78637.1\|296619_297249_+\|protein	unknown	unknown	gnl\|CDD\|234771
LR134369.1\|VEG78641.1\|300227_301727_+\|glutamyl-tRNA(gln)-amidotransferase-subunit-B-GatB	unknown	unknown	gnl\|CDD\|235489
LR134369.1\|VEG78642.1\|302022_303087_+\|riml1	unknown	unknown	gnl\|CDD\|379112
LR134369.1\|VEG78647.1\|309853_310243_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|181719
LR134369.1\|VEG78651.1\|317141_317828_-\|nth	unknown	unknown	gnl\|CDD\|223255
LR134369.1\|VEG78644.1\|303585_305439_+\|protein	unknown	unknown	gnl\|CDD\|132717
LR134369.1\|VEG78633.1\|291236_291971_+\|glycerol-facilitator-aquaporin	unknown	unknown	gnl\|CDD\|223653
LR134369.1\|VEG78643.1\|303097_303412_+\|cytosolic-protein	unknown	unknown	gnl\|CDD\|313765
LR134369.1\|VEG78634.1\|292054_294763_-\|znta1	unknown	unknown	gnl\|CDD\|319774
LR134369.1\|VEG78638.1\|297342_298191_+\|spou3	unknown	unknown	gnl\|CDD\|349969
LR134369.1\|VEG78640.1\|298660_300202_+\|aspartyl/glutamyl-tRNA-amidotransferase-subunit-A	unknown	unknown	gnl\|CDD\|234572
LR134369.1\|VEG78636.1\|295198_296623_+\|protein	unknown	unknown	gnl\|CDD\|376878
LR134369.1\|VEG78650.1\|315553_317080_-\|ddpa3	unknown	unknown	gnl\|CDD\|173859
LR134369.1\|VEG78649.1\|312674_315410_-\|valyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|380147
LR134369.1\|VEG78648.1\|310364_312449_+\|protein	unknown	unknown	unknown
LR134369.1\|VEG78646.1\|307503_309546_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|237171
LR134369.1\|VEG78639.1\|298306_298657_+\|glutamyl-tRNA(Gln)-amidotransferase-subunit-C	unknown	unknown	gnl\|CDD\|178810

Protein	Function_ID	Function_description	E-value
LR134369.1\|VEG78632.1\|289323_291003_+\|ptsa	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
LR134369.1\|VEG78635.1\|294874_295156_+\|nrea	gnl\|CDD\|224848	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown].	2.43596e-30
LR134369.1\|VEG78645.1\|305657_307271_+\|monoamine-oxidase	gnl\|CDD\|235967	PRK07208, PRK07208, hypothetical protein; Provisional.	0
LR134369.1\|VEG78637.1\|296619_297249_+\|protein	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	0.00689965
LR134369.1\|VEG78641.1\|300227_301727_+\|glutamyl-tRNA(gln)-amidotransferase-subunit-B-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
LR134369.1\|VEG78642.1\|302022_303087_+\|riml1	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.07656e-13
LR134369.1\|VEG78647.1\|309853_310243_+\|chorismate-mutase	gnl\|CDD\|181719	PRK09239, PRK09239, chorismate mutase; Provisional.	9.5939e-49
LR134369.1\|VEG78651.1\|317141_317828_-\|nth	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	2.51632e-96
LR134369.1\|VEG78644.1\|303585_305439_+\|protein	gnl\|CDD\|132717	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been shown in mouse models to suppress pain by functioning as an ecto-5prime-nucleotidase. In vivo it dephosphorylates extracellular adenosine monophosphate (AMP) generating adenosine,and leading to the activation of A1-adenosine receptors in dorsal spinal cord.	2.78266e-06
LR134369.1\|VEG78633.1\|291236_291971_+\|glycerol-facilitator-aquaporin	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	2.56303e-80
LR134369.1\|VEG78643.1\|303097_303412_+\|cytosolic-protein	gnl\|CDD\|313765	pfam10611, DUF2469, Protein of unknown function (DUF2469). Member proteins often found in Actinomycetes clustered with signal peptidase and/or RNAse-HII.	1.30549e-58
LR134369.1\|VEG78634.1\|292054_294763_-\|znta1	gnl\|CDD\|319774	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase. Heavy metal-transporting ATPases (Type IB ATPases) transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. These ATPases include mammalian copper-transporting ATPases, ATP7A and ATP7B, Bacillus subtilis CadA which transports cadmium, zinc and cobalt out of the cell, Bacillus subtilis ZosA/PfeT which transports copper, and perhaps also zinc and ferrous iron, Archaeoglobus fulgidus CopA and CopB, Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase, and Escherichia coli ZntA which is selective for Pb(2+), Zn(2+), and Cd(2+). The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This family belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	1.26045e-151
LR134369.1\|VEG78638.1\|297342_298191_+\|spou3	gnl\|CDD\|349969	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	4.64827e-41
LR134369.1\|VEG78640.1\|298660_300202_+\|aspartyl/glutamyl-tRNA-amidotransferase-subunit-A	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
LR134369.1\|VEG78636.1\|295198_296623_+\|protein	gnl\|CDD\|376878	pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.	1.22195e-106
LR134369.1\|VEG78650.1\|315553_317080_-\|ddpa3	gnl\|CDD\|173859	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
LR134369.1\|VEG78649.1\|312674_315410_-\|valyl-tRNA-synthetase	gnl\|CDD\|380147	NF000540, alt_ValS, valine--tRNA ligase.	0
LR134369.1\|VEG78646.1\|307503_309546_+\|transcription-termination-factor-Rho	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0
LR134369.1\|VEG78639.1\|298306_298657_+\|glutamyl-tRNA(Gln)-amidotransferase-subunit-C	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	5.83061e-30

>LR134369.1|VEG78641.1|300227_301727_+|glutamyl-tRNA(gln)-amidotransferase-subunit-B-GatB
MAEKLMKYADATKKYDVVFGLETHVELSTNTKLFCPAHIEFGGEPNTELTPVSLGLPGSLPVINKTAVDYAIKLGLALHCEIAEWSQFARKNYFYPDMPRDYQISQYDKPTNGNGYLDVELEDGTVFRVPIERAHIEDDAGKNTHVGGADGRIEGADHSLVDYNRAGVPLIEIVTKPIEGAGDRAPEIAGAYVRAIRDIVRALNISHARMEQGNMRADVNVSLRPSPDAPYGTRSETKNVNSFRGIEKTIQYEIRRQAARLDDGKEILQETRHWDEATQTTAGGRLKSDADDYRYFPDPDLVMLHITKEHIEEMKAQMPEMPRERRNRLKSEWGLSDLQMRDILNADALDLIEETVKAGAKAAGARKWWLGELSREANAKGVSLEELPITPADVAEVEKLIASGKLNDKLAKQTVEGVLKGEGTPDEVVKKHDYKIVEDNGAIEAAVDAAFEANPDVVEKLKSGNMKPMGVIIGAVMKATRGQADAKAVTKVVMGKIKG
>LR134369.1|VEG78640.1|298660_300202_+|aspartyl/glutamyl-tRNA-amidotransferase-subunit-A
MSNETATLVKLSAAEQAAAVKKGDVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQADAFDAKSAEDKAALPELAGVPIAIKDMIVTKGIETTAASKILEGWVPPYDATVIEKLKAAGMPILGKTNLDEFAQGSSTEHSAYQTTHNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYGGVSRFGAIAMASSLDQIGPVSRTVLDSALLQEIIGGHDKRDSTSIPEGPRPMVAAAREGAKRDLKGMKVGLIKELGGDGFQPGVEARFNEAVDKLKEMGAEVVEVSVPHIGYSLGAYYIIMPSEVSSNLARYDGMRYGLRVMPPTGVPQTAANMMAYTREAGFGDEVKRRIILGTYALSAGYYDAWYGSAQKVRTLIIEDFKKAFEQVDVLVAPTSPSTAFKFGEKMDDPLAMYMNDIATIPANLAGVPAMSIPAGLSDDGLPVGFQFIAPQQRDEVMYKPAAALEAALEDSWNGPIWNDLKTPWLDGLGK
>LR134369.1|VEG78639.1|298306_298657_+|glutamyl-tRNA(Gln)-amidotransferase-subunit-C
MRFPDNCVSHTAHIVMAMPTFSREEIVHLGDLARIALTDEEITRLQGELNVIADSINKVQEVASDDVPPTANPVPLEAYLRPDVAETPLTQEEALAGGPKTEAGMFVAPRILGSEE
>LR134369.1|VEG78638.1|297342_298191_+|spou3
MHAPNQISLAAKASGEPEFREIGLGPWSETHPGEPRPDDPTSSNYDGRFDSVLLNDGDRRNVLDRYRYWTVAAIKADLDARGRHDFEVAVENWTHDFNIGSMVRTANAFQAKRVHIVGPHKWNRKGALMTELYQHVEHHPSIAELVESWHHRIAGEIAYERAKAGAAAIHAHDVAVDGDNKHLHELLAEIDACDARIKELQAARVIALDIIPGAVPMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYISQFGSVRSINAGAAAAVAMHAWIAQHAVSGV
>LR134369.1|VEG78637.1|296619_297249_+|protein
MTESGFRPTGTPDLAVAKSHNDFAMLEPREQLATLLKEHVVGRPFSELAAVTFDHRAATVMGHVLIDALEDAGYSIDDFDAVGALTAASVPMVSAMIQAAASRGEDLDGFVMDFVYPSIKGPSIEGRRVVLLDAWLSEKSYVQTSSLVTLRNGNELSLDFGIVEQLGAKVVAIASLVGGGAKDINVVNPSTGDEQTLPFIQVFDESELR
>LR134369.1|VEG78636.1|295198_296623_+|protein
MFEQIGTVIIVIVVLVVGAGLGLFAGFVLGRHKGQEMARGVKSEELEEAKTSLENARFENAELSARNAAAQAQIEGVNQQLAFAKSQLAQAQQAEQIRIQQERERAAAEAERKRQADAQAAEAKRAEQEARLKEQSKVLEALAPVAKNLDTLQNKVTQIEEGRKREMGALGAQLKGLNDQQARLDKETSSLSAALRNNKVRGAWGEAQLKNIVESAGLLEHVDFDTQVVVTDADGRTLRPDMIVHLPGGKTIPIDAKVPYADYQRACEIPDTASPEDIARRDDLLRSHAKALREHVRALGEKAYWNAFDVAPDFVVAFIPNEALLQAALEADPTLMDDAFSRKVALTSPVTLWAVLKSVAYAWQQQSLTDDAKQLFDLSRELYERFSTLGDYAIKLGTQITKTVSAYNKFASSLERRVLPTARKLQKIEPTKIIEEVPIIESDKGNVSELSAPEVVPADEGDTHLTASGDSLES
>LR134369.1|VEG78635.1|294874_295156_+|nrea
MHGYDEDKAKVIARLRRIEGQVRAITQMVEDDKYCIDILTQISASNSALKSVALLLLDDHLNHCVRQASIQGGEVADEKLAEASAAIARLVKS
>LR134369.1|VEG78634.1|292054_294763_-|znta1
MELSIFSAATALIAAAALTWLVLRFFFGTQKATAGAMDASGERQSATITVKGGYSPAVISMRTGTPITLTFDRQETGECTSHVVFADLGLDAMLPGNATTDVELPALPAGEYPFACGMNMVHGLLRVEGEESKDGADKDGLRPRADGSAEAEGVSPSDLRVGAPVVDAAEAERREAAERANEIKALTKLVIVGAVLTLPVFAVTMLHMANPALVPHWMVNPWLQAILITPVMFYCGRPIHTVGFPALAHRSPDMNSLVSLGTSAAYLYSLVTCIAPWVFPEGSREPYFESVGVVITLVLVGRLLEAKAREGTGKAVQSLIRLRPRTAHKLNATSADNVDGIEWRNPAHFTDTDIDAIVTGDLLIVKNGERVPTDGVIVAGEARIDESMITGESKPVSKTAGDPVTGATVLLKGDCVMRATQVGADTVLSQIAAMVARAQATKAPVQQLADKIARYFVPAVMIIAIWTFAIWVSLGPAPQLAHALVTAVSVLIIACPCALGLATPLSVTVSLGLGATNGVLVTSAKALEQARRIGTVVFDKTGTITRGVVDAAADWDKPSYEQDTVKEGSREAVAALRARGIRTVMLSGDKAEVAGRIAREVGIDTVICEVKPDGKAYWIAKLQRERDEAAAKSAYGTSRTAAQSRTLIAMVGDGINDAPALAQADLGIAIGTGTDVAMQSADVTLMSGDLRGVIKTINLSNATMRNIRENLGWAFGYNVIGIPVAAGVLYPFTGWLLSPMIAGLAMALSSVCLVLNANRLHGANINVGAADGPAGSGSSTADVESAGSAESANAANITGSATSNAPHEPTVIIDDRTTLNQTNHVSDQSNNPTNKENTMDTGMHMHHTAPADGETATDPVCGMTVAVNADAITREYEGKSYYFCGEHCATNFMKAPQVFLEQ
>LR134369.1|VEG78633.1|291236_291971_+|glycerol-facilitator-aquaporin
MDYPLFTKLAAEFFGTAILMIFGNGSVANVELKNTKGHHAGWLNIAMGYGFGVMFPVLMFGSVSGAHINPAMTIAQAVNGLFPWSDVLPYIVAQLLGALLGQLIVYITYYPHYKETEDAEAILGTFCTTDADNQKVNYFLNEMFGTLVLVFGALCCLSLAWGKQDYAAASIVVGFIVWGLVTSMGGPTGPGLNPARDLMPRLLHAILPIPHKGSSRWGEAWIPVVAPIVGAIIGAWLFVFFFAS
>LR134369.1|VEG78632.1|289323_291003_+|ptsa
MRTIQGVSVSAGIAIGTVRVLAAVDYAVERRLIDDPQAEMDRFRAARDTAVAQLKQLRDNVAAEFGENKAELFDAHRLMLQDPDYAECVEGLIAQDKVNAEFAVKSAAEQFAAMFAAMDSSTMQARAADVKDVSRRVMNVLQGKRDSTAQDGSVQGDAVQNGIVQNGIAQNGESHIIFAEDLAPSDTAQLDRAKVLGLVTAKGSANSHTAILARTMGLPAITGIGDAFDPADDGHVAVIDGTSGAVFVDPDEATLTEYRRRKAEAEEHLSLLRKLKGKPTETKSGQRVHLYANISRPSDAAAVLANDAEGIGLFRSEFLYLEREDWPTEEFQFDAYGQVAQEMGDRPVIIRTLDIGADKQVDYFNLSHEDNPALGYRAIRICLTRPEIFKVQLRALLRASAYGNIAIMLPMITSVQEVRDAKRILEEAKSELRGERIDFNESIQIGVMIETPASVIMADELAAEVDFFSIGTNDLTQYTLACDRQNPSLERFADPHSPAVLRMIQMTIEAAHRHGIWCGICGELGADLSLTDTFLRLGIDELSVSPTSVLPLRNVIRNH
>LR134369.1|VEG78642.1|302022_303087_+|riml1
MTATNETLSMATEAQLKRDLPQSIVIPPIRGEMVHLRPATVEDLPRLDELDAFYGASKITGKDAVTERAIVHTWVRRSQAWEAGQAPAESGVGDPESRRTIAWAVLTDADHDDDGQLDAASTDNVIGMIFLIDIDGWSKSARIQIILGREYRGRGYSRDAMPRVMTYGFAPEPAGLGMHRIWVSVPEKNSRSISVYQSLGFVPSGTSRDALWDAENNKYQDLIVMDTLADEYDPIRSLDAFGMHLIEDNPGVKEALSAREHSIAIQQNKPEPEPAQRGEAAGATTSDVQSQAQTPAAAQPVEPQAEHHDDTQKNTRHSLEEESNWPYGQAERKPSKEAWWRTLGRGRKRDTESE
>LR134369.1|VEG78643.1|303097_303412_+|cytosolic-protein
MSAEDLDNYETDAELALYREYRDVIKLFTYVVETERRFYLANKVDFNVRSAGQDVYFDVQLTDAWVWDVYRSSRFVKSVRIVTFKDVNVEEVQKTDIDIPDDIH
>LR134369.1|VEG78644.1|303585_305439_+|protein
MQQGLKGSIAGVVAAATLLAGGILTVPHAMALEADGQYYSSKQPYVAPSEATTASYSQAPEGYETVYTESMARHGSRGLSSYKYDALLMKMAEAAEADNGFKSDAIKSEFMKNLKAITAANVENGYGMLTGQGADQHQGIGARAYERNKTLFDNAAKDGGKIAYQSSGEARATESGENFARGFNAASNNKLANSTVTPADPAGTGEAAAFDKTPNTLYFHKSENPDGTEKTGEAKQRADDYQNFVENDAIIAGAEQTIAENEDVKTASHDLLSQIFTDDFLAKLADGTYAWYNTVDGTKGGEANCAPGADPSKDADACGAAKKKIASEYDAAMDLYNLYIIAADMENENTGSHTFDFNQYFQGEQADDAKLFAWALDAEDFYEKGPSYAGQDETYTIAQPLLDDFFSSIDERVNGGSTVATFRFAHAETMMPFAALLGLPGSTQQAAASTTDVYTYANNEWRGESVTPMAANVQWDVAVKSGNDPKTGRAYTPLVRMLYNEQEIAFRSECTPIADGSTWYKLTELKSCLASDHQTLGDDAHLTDDSTTQPGTGPNTGEGTSTTPNNNGAGTHQPSNTQANGTENELSRTGVAVTGVAGIMMLLALAGISLNLWKVRR
>LR134369.1|VEG78645.1|305657_307271_+|monoamine-oxidase
MTDKQSVVIIGGGPAGLTAAWELIKDGGADKYDVTVLEGTREFGGISRTVKHNGNRMDIGGHRFFSKDERIMDWWKTVLPLQGAPSYDDKKLGRDHDMEPGGPDPETEDKVMLKRHRVSRIFWNRHFFDYPISLSPNTLKAMGFKLTMVAGFSYLKSMFHKLPEDNLENFYINRFGRKLYSMFFEGYTEKLWGRHPSQISADWGAQRVKGLSIMGVLKNAFQKLLPKKRSNAEVETSLIEEFWYPKYGPGQLWETVESNCEAAGVKVLTDARVVEVRQTDGAVSSVVYEDSEGNRTELSGDQFISSMPVKDLVNAIDAAGADPEAVDSKPAPADMTEVANGLPYRDFVTVGLLVKHLKLKNTTSIPTLGNPPIVPDCWIYVQDPGYKVGRLQIFNNWSPYLVKDVDDTVWIGLEYFCEEGDSFWNMSEEDVTKFAISELTRMRVINGPDEVIDSHRERVRKAYPAYFDTYEHMDELIEYLDGFGNLYCVGRNGQHRYNNMDHSMATAMEAVGNIKTGKTSKKNVWSVNTEKSYHEEK
>LR134369.1|VEG78646.1|307503_309546_+|transcription-termination-factor-Rho
MKLPELKELAKQMGLRGTSTMRKPELLATLQAARNGGEPPAGVTVRAPKAAKTAKVVKAPQSDAAEANTTDNADVATQSPAPAPAATEPQLDLPLPVADDAKKDETEPRRTRRKAADDAASEPRAARRRRDDDQPDFARRKPRKKADEAGDLLATLDLGDAAPTERRRERHEDVEVPLIRRVRDDEDEQPRRRRRTAENSEETVRDLDDILATLPTQKHEETSEDGEQNDDHEFVRRNRRDRSDRNDRDTRNDRSDRRNRRMRGRDRDNADDDRRYDDRDNRSDRNDRDSRREEPQEDLVPVAGIVDVLDSYAFVRTSGYLPGPNDVYVSMGQVKKYGLRKGDAVHGSIRAPREGDRRNQRQKFVPLQAIDSINGQSVEEALNRPQFSKLTPLYPQERLKQETAPNKLTGRIMDIVSPIGKGQRGLIVSPPKAGKTITLQNIANSIAANNPEVHLMVVLVDERPEEVTDMERTVQGEVISSTFDRPASDHTTVAELAVERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAIDINASGTRREELITNPQELPIIYRLRRLLGGMEPEQAYQTLVPRLKKTATNRDFLAAIVQQANTGNAVNGN
>LR134369.1|VEG78647.1|309853_310243_+|chorismate-mutase
MSETSSDWQRTTIDSAQAAAHPETAQAVARIKALRQTIDNIDSAVIALLAERFKATSQVGVLKANAGFAPEDTKREDYQIERLHRIAIDAGLDPEIAEMYREFVVTEAKKRHQRIADAGGDPGVLDVFA
>LR134369.1|VEG78648.1|310364_312449_+|protein
MRCGAALVSCALCVASILGGAWMSRPTPVDYGPVLATASDMYAVTDAEGEPVRWYVVGKGGAGNGASADSGNSGSTDTDSANSNSGTSKVSRIPASAATLPWKVSVTYSLDGPNVEANEVAGASGLIGVYIDIKPQTKEANRTIPVVAFTVPTQVADDVSADNSITVTTQGSNTVVAAAGKAATGLEFSCYMNAKDFSMSSVALAVLPSNSSSPAVGANPDAANAANAAAQPAADTDVAQLTASAATLVDSLTDAGSGEQQQLIEQLQTLRDNERALNKSVVAERETAHKRTFEDYMAAYVGSYTTHLSGSIGTSTQLPALMGTAGELSGDTPLAQAVLDLANAVNNVSAAHQHAGAVDALDEVIRRIQQQGTTGLVDDLIAEASEEATQGSKQYADGQSQLSAAMIPYSMKYTDVYTANLSALTGGTSSGATAYESQAIAETNGSDELADAQSKVDAAMSTLATASEHTGKATALRQIVLRFSDQFEGGASSASGSDGDGSSGDVSSDPVTEAQALTGLVDSQSQSFYGKTRVAQAKRKADAARKQAKAAQQQQSQHSKASLVDDTMSMSAGDVMNYAGGLTSAIGGGDKSDSSKSAGSGTNDSAKSSDTGDSGNGKASNASDSGNNLDTAPVLFGFGTGGTLFKHDMNALINETVKISDAGTLLAQAVAQLDSPNTQQKTAETRYLIVIPTV
>LR134369.1|VEG78649.1|312674_315410_-|valyl-tRNA-synthetase
MTEGKSIINANLTPLPDKVGVDGLEDKWRTVWDEDGTYKFRNTRDRKAVYSIDTPPPTVSGSLHVGHVFSYTHTDVIARYKRMRGYDVFYPMGWDDNGLPTERRVQNYYGVRVDVSLPYDPDFKPPFEGTDGKKIDAKDQVPISRKNFIELCERLTAQDEKLFEALWRKLGLSIDWSQTYHTIGQHPQRVAQKAFLRNLARGEAYQQDAPGLWDVTFQTAVAQAELESREYPGFYHKVAFRFEDGTPIYIETTRPELLAACTSLIANPNDERYKQYFGQYVYSPLFKVKVPILAHPAAEMDKGAGIAMCCTFGDVTDVEWWRDLKLPTRPIIQRNGRIVMDTPDWIEDPAGREVFAETAGKTTFSARKIIVDKLRESGDLDGEPTPTKRMTNFYEKGDKPLEIVTSRQWYLKNGGTDAKLNAELIERGKELEFHPDFMRVRYENWVHGLNGDWLISRQRFFGVPFPLWYPVNASGEPDYDHPITPSEDRLPIDPTIDVPEGYDESQRDVPGGFTAEKDIMDTWATSSLTPQIVTHWAEPDEASKALFASTFPMDLRPQGQDIIRTWLFSTVDRAHLENKCLPWAHATLSGWILDPDHKKMSKSKGNVVVPNEPIEKFGADAVRYWAAAARLGLDATYDIGQMKIGRRLAIKLLNATKFALAIGREDENHHVGAAAEAAWNPADVTEPLDRAAMAKLALVVRQATEALESYEHSKALEVIESYFWQFCDDYIELVKNRAYGTPDEHGNVPSEKAVKSARTALGLGLDAFARLLAPYLPYATEEVWSWMHAGSGSVHRAAWPVVDPYVEAATGASPELLTWAGKAVEQLRKIKSEAKVSMKTPILSVALSAASEGVEAIHAALGDIAQAGRVVGKFDLVAKHAEESAAEGTPETEVAVEASELGEPPAKKPKH
>LR134369.1|VEG78650.1|315553_317080_-|ddpa3
MQHSKRDNTWSKWGIFLGVAVALGALVVVGWTFMQNRFQPGSSLDADVTIGIDDMPQSLDIRSDSSAAAERLLVDNVYETLVTVDQDNKLQPGLATSWKTSDDGLTVTLTLQSGVTFSNGHTLDASDAVWSLQQNVTNKVADVDELGDLASVANPNATTVVITLAKPNPTLLRALSGRLGIVYDSESSSADYQRKAIGSGPFTVADFQPGHSLKLARSDTYHGTKAASNVVEFMQYSDADALSKALTDGSLDMAAPVSASTATGLNGKDGLTVKEGATTDKVLLAYNNGTDSLLSDEQARKAFRYQIDAAGIASAQPDAAGALGGPISLLEPGYEDLTGLYPHDENQAGQMFSYFGAQYLTTVNLVVPEEYRSLAETIKQQIERQPRPTVNLEVLSDEDYAKRIKDGKWELTVMSMDGTDDAGIFADPDSMFHYDHTEAQQAYADARAATNDADYEARMKAYARLISEDAASDWLYTRKCFTVASTKVSGYPTSMINRRMPLAGLTVK
>LR134369.1|VEG78651.1|317141_317828_-|nth
MRETKSARLTRMHDEYDILRQVIPAPACALHFSNPLELLIATVLSAQTTDKRVNTVTPELFATYPTARDLAAANPAQVEDIIHPLGFYRSKTQHLIGLATALDERFGGVVPRTMDELTSLPGVGRKTANVVLGNAFDIPGFPVDTHVMRVTGRLRWRSDWRSAHPDPVKIEKEITSCFPPEEWTNLSHRLILFGRATCHARTPDCANCPLSDTCPSYAPPAGKSTSKR

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Crispr_ID: LR134369_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134369_3

1467665-1467745

Orphan

Consensus_repeat	Method
CGCACAGTGAAACCGTCTCATAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134369_3

>merge|LR134369|3|1467665-1467745|CRISPRCasFinder
CGCACAGTGAAACCGTCTCATATGTCGCCGCCGCGCGGGCAGTCTCTACCTGCAGCCACGCACAGTGAAGCCGTCTCATAT

>LR134369|3|3|1467665-1467745|CRISPRCasFinder
CGCACAGTGAAACCGTCTCATAT	GTCGCCGCCGCGCGGGCAGTCTCTACCTGCAGCCA
CGCACAGTGAAGCCGTCTCATAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134369.1\|VEG79677.1\|1472015_1473725_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|224048
LR134369.1\|VEG79672.1\|1462048_1465726_-\|smc	unknown	unknown	gnl\|CDD\|274008
LR134369.1\|VEG79664.1\|1453889_1454399_+\|ybaK/ebsC-protein	unknown	unknown	gnl\|CDD\|237976
LR134369.1\|VEG79683.1\|1480561_1481686_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
LR134369.1\|VEG79674.1\|1468891_1469497_+\|CTP-synthase-(UTP-ammonia-lyase)	unknown	unknown	unknown
LR134369.1\|VEG79671.1\|1460934_1461930_+\|protein	unknown	unknown	gnl\|CDD\|379214
LR134369.1\|VEG79668.1\|1458012_1458333_-\|protein	unknown	unknown	unknown
LR134369.1\|VEG79666.1\|1455721_1456678_+\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185699
LR134369.1\|VEG79681.1\|1478072_1479356_-\|naga	unknown	unknown	gnl\|CDD\|238434
LR134369.1\|VEG79665.1\|1454438_1455431_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
LR134369.1\|VEG79670.1\|1459259_1460813_+\|mure1	unknown	unknown	gnl\|CDD\|234660
LR134369.1\|VEG79676.1\|1471444_1471966_+\|ADP-ribose-pyrophosphatase	unknown	unknown	gnl\|CDD\|240032
LR134369.1\|VEG79682.1\|1479411_1480224_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|179028
LR134369.1\|VEG79679.1\|1474899_1475991_-\|dipeptide/oligopeptide/nickel-(Ni2+)-ABC-transporter-membrane-protein	unknown	unknown	gnl\|CDD\|223674
LR134369.1\|VEG79678.1\|1473728_1474898_-\|dppc1	unknown	unknown	gnl\|CDD\|224094
LR134369.1\|VEG79675.1\|1469800_1471396_+\|peptidase-M24	unknown	unknown	gnl\|CDD\|238520
LR134369.1\|VEG79669.1\|1458332_1459085_-\|RNA-polymerase-sigma-factor-RpoE	unknown	unknown	gnl\|CDD\|236608
LR134369.1\|VEG79680.1\|1476158_1477793_-\|ddpa1	unknown	unknown	gnl\|CDD\|173884
LR134369.1\|VEG79667.1\|1456802_1457747_+\|galm1	unknown	unknown	gnl\|CDD\|185699
LR134369.1\|VEG79673.1\|1465786_1467427_-\|folc	unknown	unknown	gnl\|CDD\|223362

Protein	Function_ID	Function_description	E-value
LR134369.1\|VEG79677.1\|1472015_1473725_-\|ABC-transporter	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
LR134369.1\|VEG79672.1\|1462048_1465726_-\|smc	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
LR134369.1\|VEG79664.1\|1453889_1454399_+\|ybaK/ebsC-protein	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	1.03772e-74
LR134369.1\|VEG79683.1\|1480561_1481686_+\|transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	5.7177e-37
LR134369.1\|VEG79671.1\|1460934_1461930_+\|protein	gnl\|CDD\|379214	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions.	7.48505e-09
LR134369.1\|VEG79678.1\|1473728_1474898_-\|dppc1	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.94335e-82
LR134369.1\|VEG79666.1\|1455721_1456678_+\|aldose-1-epimerase	gnl\|CDD\|185699	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.	4.73886e-125
LR134369.1\|VEG79681.1\|1478072_1479356_-\|naga	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	7.95845e-146
LR134369.1\|VEG79665.1\|1454438_1455431_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	1.08154e-161
LR134369.1\|VEG79670.1\|1459259_1460813_+\|mure1	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	1.4264e-148
LR134369.1\|VEG79676.1\|1471444_1471966_+\|ADP-ribose-pyrophosphatase	gnl\|CDD\|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.36956e-55
LR134369.1\|VEG79682.1\|1479411_1480224_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|179028	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional.	3.28784e-125
LR134369.1\|VEG79679.1\|1474899_1475991_-\|dipeptide/oligopeptide/nickel-(Ni2+)-ABC-transporter-membrane-protein	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.77009e-104
LR134369.1\|VEG79680.1\|1476158_1477793_-\|ddpa1	gnl\|CDD\|173884	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
LR134369.1\|VEG79675.1\|1469800_1471396_+\|peptidase-M24	gnl\|CDD\|238520	cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.	2.4976e-108
LR134369.1\|VEG79669.1\|1458332_1459085_-\|RNA-polymerase-sigma-factor-RpoE	gnl\|CDD\|236608	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.	8.36421e-71
LR134369.1\|VEG79667.1\|1456802_1457747_+\|galm1	gnl\|CDD\|185699	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.	5.80439e-131
LR134369.1\|VEG79673.1\|1465786_1467427_-\|folc	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	1.416e-130

>LR134369.1|VEG79673.1|1465786_1467427_-|folc
MSFEHPNRNNESMRDVELDIMSRPPEHNTTNLDLDRMNLMLDILGHPEQSFRVIHITGTNGKGSTARMAEAICRAYGMRTGLYTSPHLEKINERIAIDGQQLSDDDFIDIWDQTKDLVALVDAKMEEQGKPKMSFFEVLTAMAIWKFADTPVDVAIVEVGMGGLWDATNVLNADAAIIGPVDMDHMQWLGDTVEQIATEKAGIIKPNCTAIIGPQPHEEAVMPILAEAAERNHAMLVRDGYEMTASDRMAAVGGQVATLTTPNGTYEGVPIAKFGEHQAHNALAALAASEVVIPVNGPLDGDLVAEALSSVKIPGRIEQIRTSPTIILDGGHNVNAAEALRKAIEESYDFKQLVGVVAMMRDKQVEEYLGVLEPILSSVVVTENSWRERVMPADELEKIAVDVFGRDRVIKEANLPDAIQTAVNMVDAEDELGVGYGHGVLICGSFVTAGDARLMLEEHASPTMRQAMAVHQPAVDPDDSDQPADKAEDEAADNLEDSVSPDDFDVFDVLGLGKEQAGDAGTGTASADTDSTDTASADTDDSADAR
>LR134369.1|VEG79672.1|1462048_1465726_-|smc
MYLKELTLRGFKSFASVTTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTSMEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCRLLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHRKRKERALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRADAIQISVRDAQARLYAEDAQRSMSRRDTVRQELGAVRNQLAVAQRELAQVKVRIEQVEALSSESSPAIAKANQYWHEFSQTRERLNALAQLAEERSRSLAGQIVTNFGEDPGMLVKRAEELESQAAAQTKAVADARIALDKATEERADDEKKLASVRQTLTELRKTAQERDAQIARLRELIAREESAVQLATSRAKDYASQRDSLTSQRDDAQQQLDALRSEADSIADDDGAALDAARATLAECRERLNERADKQREIQSKIISLKSKADALADTLDSRNASGSLERDTDVASLGRLTDFIHVAEGWGEAVAHALDQYASAIVVPAAGNMLHALERAREDKLGKAVVLTASIAGDPATEPGTESEESSAENAGAAPQSGNALAALVTANPDAENPAQAEAVVRTVRLLLADVAAAGTADEAQQIVAFGEAMRAVTKNGETFTHGVAAVGGSSISQSDLSLAARRDKALAQVKQLTAQDGGMAEQVAEAKTKRDEAARLVDQESAKRTEARLKAQQAEKSLKSATDRVASFTRQLEQLDRKITETQENCNEHQLKLDDLNRALASARQSTAEHADFDELDERERTLERGLNLTREHEVAAKIAWTEASRKGESLSRQAGLLRDNAKEAAERRARIEALNDRRREQAAHLQGVADDARAVAAMVEHTLHDVAAKRDELQAAASSHDEELKALRAQRNQIEPKVTDLTGREHALDVNRERLAAESGQLMQKVSDELGLTLEELVGDYGPEQPVPVLDDEGNPVPLDETEAEAGTEEGETGGEAGTNGDSALFKTVPYNRQEQKKRLDKARRDLAALGKINPLATEEFEALEERNKYLNDQRNDVVKSRDDLMQLIKDLDSTMVQVFKSAFDDTAEAFEQMFATLFPGGTGRLRLENPEDMLTTGVLVEASPAGKRVKQLSLLSGGERSLTALALLFAIFTARPSPFYVMDEVEAALDDVNLTRLINAFNELRAHAQLIIITHQQRTMSIADALYGVTMRADGVTAVVSQKLER
>LR134369.1|VEG79671.1|1460934_1461930_+|protein
MITLEKVDGATLEAEAEKAGITLPIEQTKVWSGFQADIDGRTPWGDYLIKRDGELVAVISFIDFETHGYHYLRSMHGPAWAAKPTEAEEREVVDAIVDTVKKADKNIAFLRIDTWFADGTEKVLSTVPYDQTVVIDVTGGDDEILARMKRRGRRDVRKSLRECPAEVADETDKALADFSEYYDVMVETGQRDGFTPAPMSDYSDMIGALGADHCRVFAARIEDRVVAWSIVTVNGTHAVRYYAGMRNEVMRLHVTDKLLYSECCILGSQGITEYDLMGIGSDFAPSLKGLNEFKCKFTEEITPVAPARDVPIKKVFYKTLQTVQGVRKALR
>LR134369.1|VEG79670.1|1459259_1460813_+|mure1
MALTLASAADLLKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTQGTLLCCKGRFKAEYLNGIDEAGLAAYVAETEYSAATAAPGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAHASFHIADGDQTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDADALHAIESVRIAGRMEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEAAENRIANFIFTAEDTDTEPFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAHADRFNILLIIGKGNERWIKDHHKHVPFDGDDHVVERMFGL
>LR134369.1|VEG79669.1|1458332_1459085_-|RNA-polymerase-sigma-factor-RpoE
MAAKRARFEQLAMPAVNALYRQAMRLTNNPDDAQDLVQDTFERGFKAFDSFQPGSNFEAWMTTIERNAYFNQYAKAKRRPQRANDSTGEYDDWDIYDAAEHTSDGLKSAEEEYLDAFAPEEIMAALAKLSPERRQVFIDAAIDGKSYQQVADEQGVKIGTVMSRLNRARTQLKRELASYAKERGYVTGSSAGSPSAKLSENVGRIADSGHNESSEQTVGSNGDTQAVVRHSHATGARTPQQSSKLSGKEI
>LR134369.1|VEG79668.1|1458012_1458333_-|protein
MNDQPVERTRHISITRTAADGTVSQTEVHITAVHHRSVDTGSAAASVQTDVHIVTEGDCFDPRTCCDEREQALIAALRAYLRPDVAPECLMARLKATLDHCCGEDK
>LR134369.1|VEG79667.1|1456802_1457747_+|galm1
MALKPRTGNQYVISSGEWSAVVTELGASLRELKWRGEDLIVPFDPNKVIPCCNGWVLAPYPNRVTNGQYSFDGEDYQMPIDEFDRQSSLHGYAYRYMWELVDLQESHVTLSWRSPDIAGYPFDITITATYALDENGLTETFTVHNNDSVKAPWAFGIHPWLANGKHATGQAITADNEPCRLELHCDTHVTVDEHLLPTGEEPVSGIFDLRDNPTLEGRGFDDAWTDITNRGEDGSTSAAFTRPDGIKVTLTGDKTINSWQVCTGNEIGEKARQAGVAVEPMTAYADAFRTGKDLVVLEPGDDYTTVVTFHAEQI
>LR134369.1|VEG79666.1|1455721_1456678_+|aldose-1-epimerase
MTSKTPRTGNQYSIHYGDYSAVICELGAKIRRFDYQGKEIFCPFGVNDLTPTCNGYVLAPWPNRIENGEYDFNGKHYCAPVNEYHPAPRNNANHGYAYHYMWKLESLTDSAVTLSLRFPNLDGYPFDVTVTVTYELGDNGMTATVNARNDGDEPAPWALGLHPWLANGKQGATAAERDADSAACHLQIKAASHVTVNEALIPTGTEPVTGIYDLNDGPTLEGRAFDDAWVDVERAADGTTTTTFTRPDGIEVKIIGDETINAWQCYTATGAPFAEHPYGIAVEPMTAPANAFRTGDHLVTLAPNGDYTTVVRYEVVQK
>LR134369.1|VEG79665.1|1454438_1455431_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MTKSVVLADPRGFCAGVDRAILTVQTILKAAEASGKRTREDGLPPVYVRRQIVHNKHVVEDLAGQGAVFVQELAEIPDAAAQAGIPVVFSAHGVSPVVKAEAERRGMHVVDATCPLVGKVHREVLRFVREGYEIVYIGHKGHDEAVGVVGESPEHVHLIEHESDVDSLDFAPDTKLVLLSQTTLSVDETADTIAALKAKFPWIQEPPSSDICYATSNRQAAVKLVAQQSDCVVIVGSANSSNSVRLMEVAQEGLGERGKAYRVDDASELDPAWFVGLESVGISSGASVPDELVSGVIDALQNLGFTGMKSVETIKENMHFVLPAELRRKK
>LR134369.1|VEG79664.1|1453889_1454399_+|ybaK/ebsC-protein
MAKKSKHDKGAGSTPATVQLEKAGVEFHVYEYEHSNDHMDDGYGVEAATKLGFDEHQVFKTLMADTGAERVVGVVPVSGHMDLKALAAAVGAKKASMADPKVAMRESGYVVGGISPLGQKTRHKTVLDESALQFDQILVSGGKRGLSVGVNPQDLLKVLNAVAAPIGTW
>LR134369.1|VEG79674.1|1468891_1469497_+|CTP-synthase-(UTP-ammonia-lyase)
MPDMNNPKTHYEASGLSLISPARTLVEAAIDLDFRFALPIFDSALAKGITKEEIAADCVQWRIDYARVFRLLRYANERSENGGESLARGTIIEDRFLTPRIQVTVTDPQTNTEYRVDFVWKLDDGRVIVAEYDGTQKYVDPAMTDNRSIQEVVAKERARDEGLKRAGATEIVHFTYADVIERTPLRVKLIKAGVPQVETSA
>LR134369.1|VEG79675.1|1469800_1471396_+|peptidase-M24
MGEVITAKDKEYEAEERATAPGANQSMSDRVNNRSLRPQSAAFKEFMKSGWADDDPEINPLESSKFTPARLEALGKAFPGERLVIPAGQPKVRNNDCDYMFRPDTTFAYYTGLGSDYEAGAVLVLNPVDPDSPEAAAGKTHTPELFVAPRADNSTEDFFMSAHYGEYWVGPRAGLKEMQAMTGIETHDIAQLADALSKDVGAEAGAVRVRVVSETDPQITSMVESIREANGFADPDKNSASDDKLHEFAAEARMVKDGYEINEMRKAVDATKHGFDRLLSALPAALDKPRSERILEGAFNAVSRELGNAVGYDSIVASGPHAPILHWMRNTGVVKTGDMLLVDAGVEVDSLYTADITRTFPTNGKFTDFQKRLYQAVLDSQQAGFEAAKPGATYSDIHHACMRVIAERLHDWGLLPVSVEESLSPQGQQHRRWLACGVAHHLGLDVHDCAQARFESYQGAPIRPGMIFTIEPGLYFREDDLLIPPEYRGIGIRIEDDVLMTENGPEWISAGIPKQIDDVEAWMAEQAAQAK
>LR134369.1|VEG79676.1|1471444_1471966_+|ADP-ribose-pyrophosphatase
MSTPEFVLELRKKIGHDLLWLNGVTGCVLNEHGQLLLGRRSDTGEWAMVYGINEPGEQPADTVVREIKEETGIDAIVTDLVAVTSSNKVLTYANGDNTMYMDHSFLCALKPGGNAEPFVGDEESLSVGWFDLDDLPTPLAASTSERLELFHTYIENKKHGDAHALFQFDGQQY
>LR134369.1|VEG79677.1|1472015_1473725_-|ABC-transporter
MSENNKNLADIKDLSVSFMTDAGSIKAVEDVNFTIPRKTVVGVVGESGSGKSVTARSIIKLLPETATTSGAVYLSKRDGSDSLDVLSLSGEQLREVRGSEAAMVFQEPNSVLNPVYTIGWQIEEGLRAHGMKDKKELRAKAINILKKVGIPDAETRVDYYPHQFSGGQKQRIVIAMALVLNPGLILADEPTTALDVTVQAEILDLLRLARDEFDASVLIITHNMGVIADIADQVVVMYRGHVVEQGDVEQIFYHPKDDYTKRLLGAVPRIGQKLVVRDREGKPIERKADWREQPIAVEAKNLTITYPGHLMQPDFKAVDGANFTIHRSEVLGLVGESGSGKSTTGRAIAGLQKVSGGSLNVLGIEMNGVKERDFKPKRADIGFVFQDPGSSFNPLMTIAENVAEPLLVHHKYGSVADAKNYVGDLLEMVQLPRAYMNRFPHELSGGQRQRASLARGLALKPSLLIADEPTSALDVSVQAKVLELFKRLQAEIGFACLFITHDLAVVDMLADRIMVMHKGQIVEHGDADQIMQHPENPYTKKLLASLPVPDPREQQQHRAHLHELLAQEA
>LR134369.1|VEG79678.1|1473728_1474898_-|dppc1
MTTASQDKITVPGDDRLTKLNVSTKTPFWTKIPIIKELRVAVGWQKGMLITGLAITAFFLLVALFAPLIAPYGHAQIKAADGTSFPAQAAPSAEHIWGTTAAGFDVFSRVVWGARTAVIAIVVAVLLSIFAGVLLGLVSGYYGGWVDRILVMIADAVYSFPSLLLAILMAIMISHGQSGLWSGILASGISITVVYIPQYFRTIRAEVIRIKESAYVESARVVGASTWRIMTKHLFKNSTRTLPVILTLNSSEAILTLAGLGFLGFGIEPTAAAEWGYDLNRSVSDVTAGIWWTAVFPGIAIVLIVLGITLVGESLNDLADPRLRARKSAGEVVGSIEDTSVDPNEKPTARNEVIAELDANVDPPATVTDHDPTIVASEWTGEGKPEGKE
>LR134369.1|VEG79679.1|1474899_1475991_-|dipeptide/oligopeptide/nickel-(Ni2+)-ABC-transporter-membrane-protein
MSDSAIATSSTTPAKAKTKKNRLSGSFFRFVLTRFLLIIPTVFILVTIVFFVMRATGDPISAALGGRLTPAELQQRIHAAGYDRPLIVQYVDYLGGLLHGDLGTTLTDNQPVISILTHYGAATFELAFLALIVALIVGIGLGRLAARKRDRAADAGIRTFAILCYATPVFFLGLVLKLIFAVWLNILPASGRSDLNSEMQFTRLVSPTGFYIIDAIQLGDMNVLVDVLRHAVLPAVALGLLTAGVFIRLVRTNVISTYNSGYVEAARSRGVSEKRLLNKHAWRPALIPIITVMGMQIALMLAGAVLTETTFEWKGLGFMLSQYLKARDFVAVQGIVILIAIIVAVVNFLVDVIAALIDPRVRY
>LR134369.1|VEG79680.1|1476158_1477793_-|ddpa1
MNSKKILAAAVSVAAIASLTACGGVKDDTAAGADSGNAITIGTTDKITSLDPAGSYDNGSYAVQIQVFPFLYAQDYNTSELSPDIAADDGTWNDDGTEFTVKLKDGLKFANGNDLTASDVKFSYDRIKKINDPNGPSSLLANVESVTAKDDTTVVFKDSVPFDVTLKQVMSSPAGPIVDEDTFDADKLADADTIVSKKAFAGPYTLTAFKINESAAYAKNDSYKGLTPAKNSVVQVKYFADASNLKMAVQQGQVDVAYRSLSPTDIEDLSKDSKVKVVKGPGGEERFIAFNFKIQPYGESQPDADANKAKAVRQAVANLIDREELSTKVYKGTYTPMYSFIPDGLAGHDDTLKSAYGDGNGKPSTEKAKKVLADAGVTTPVDLKLQYNNDHYGSVSADEYAALKSQLEAGGLFKVDMQSTEWTQYNKDRVVTDDSDGVYPVYQLGWFPDYSDPDNYLSPFFRDGNFVNNGYSNKEVNDLIVKQAGEKDESARGDILKQIQKLETEDLSTIPLLQGAQVAVTGTSVKGVTLDASFRFRYASVTKG
>LR134369.1|VEG79681.1|1478072_1479356_-|naga
MSDRNEIVSRVTAALEGKPAPVAIRNARKVDARGERRGYWVVSDAAGVIVAAGTGEETFEHYCRTVGLDPADRNAVIDAEGRILTPGYVDIHAHGAWEKSFDDGPDGIDVARAGHAVHGTTRQVLSLITNPVDVICRNIRTVRAKMESGRPDILGCHLEGPFLALARKGAHDPECLKDPVPDIVDKMLDASGADPASGKLGCIRQITIAPELPHGISAIRQFAAAGVVPAVGHCDADYETAKAGFDAGAGIMTHMFNAMNGLHHREPGPIPAAVEDPRVTIELINDGFHVQDPMVSLSFRFAPHRTAFVTDAMAATDCPDGAYKLGALDVNVVDGHARLVSNGAIAGSTLLLEVAVRRAVDELGFSPVDAVEAATLTPAKAFGFDRPNPVTGAPIGLIAPGFAADFNLADPADWTVEQVWCAGRKLK
>LR134369.1|VEG79682.1|1479411_1480224_-|glucosamine-6-phosphate-deaminase
MPEIIIVKNEAEAGEIYGRCVADLIKAKPDAVLGLATGSSPLAAYQALAKIVKDEAIDVSGVRGFALDEYIGLPLTHPESYHATIHRTVVEPLGLDPAKVHVPGDVLNGTPLEDGDKVALAGPAYDRAIEAAGGIDVQILGIGTDGHVGFNEPGSSLASGTRVKTLAEQTRIDNARFFDNDINQVPTHCITQGIGTIMKARHLVLLAFGAGKAEAIEETVEGGVSAFCPASALQMHPHATIIVDEEAASRLRHKDYYRYAYTHKPAWQGI
>LR134369.1|VEG79683.1|1480561_1481686_+|transcriptional-regulator
MSYLGLNTTTDDHAAKASPADVRRKNRQLIFRLLFPTNQYSRAELGRRTGLSRVAVSDVVGRMLEEGLLRETGQAPSGGKGKRGTLLSIDIDRLRIISIDLTQEHLLHGAVTNLLGQPLRHAEVTLNTGSFVSVDVIIELIEKMLGMSDGEVIGIGVASPGVVDNGVVRSSTMRGWNNLDLSTPIAEHFGLEVNVSNDATAAMLTERFFGQGGPNMLFVRIERGIGSAILLSDTPVIGELHAAGELGHISIDLDGPPCPCGKHGCLETMISGTALKKQLSAADVEQHQNILARAGRYLGQALAMPVGLLDMADVCVYGQPNIINATFIGAAQQYLDAATSSSFHKHTVIRRCECGPDITVQGEAIAVVFQHLAK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134369_1	1.5\|179998\|24\|LR134369\|CRISPRCasFinder	179998-180021	24	NZ_CP047177	Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence	98015-98038	3	0.875
LR134369_1	1.5\|179998\|24\|LR134369\|CRISPRCasFinder	179998-180021	24	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1789555-1789578	4	0.833

1. spacer 1.5|179998|24|LR134369|CRISPRCasFinder matches to NZ_CP047177 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

atcggttccgcagccggctgccgg	CRISPR spacer
atcggttccgcagcgggcagccgt	Protospacer
************** *** ****

2. spacer 1.5|179998|24|LR134369|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 4, identity: 0.833

atcggttccgcagccggctgccgg	CRISPR spacer
gtcggttccgccgccggctgcctc	Protospacer
.********** **********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

997156 : 1039962

Gordonia_phage(40.0%)

integrase,protease,transposase

attL 992458:992474|attR 1044744:1044760

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
992458:992474	attL	NA	NA	NA	NA
VEG79210.1\|997156_998440_+\|transposase	transposase	A0A1B3AZE5	Gordonia_phage	2.9e-10	30.8
VEG79211.1\|998526_999582_-\|integrase	phage integrase	A0A2K9VH95	Gordonia_phage	2.3e-05	30.8
VEG79212.1\|999578_1000544_-\|integrase	site-specific recombinase, phage integrase family	NA	NA	NA	NA
VEG79213.1\|1000540_1001743_-\|integrase	site-specific recombinase, phage integrase family	NA	NA	NA	NA
VEG79214.1\|1001976_1002198_+\|transposase	transposase	NA	NA	NA	NA
VEG79215.1\|1002568_1002703_-	Uncharacterised protein	NA	NA	NA	NA
VEG79216.1\|1002941_1003166_-	protein	NA	NA	NA	NA
VEG79217.1\|1003252_1004077_+	ribosylglycohydrolase	G3M9X5	Bacillus_virus	3.7e-19	27.4
VEG79218.1\|1004586_1005477_+	Uncharacterised protein	NA	NA	NA	NA
VEG79219.1\|1005766_1006201_+	Uncharacterised protein	NA	NA	NA	NA
VEG79220.1\|1006215_1007154_+	Uncharacterised protein	NA	NA	NA	NA
VEG79221.1\|1007178_1008171_+	Uncharacterised protein	NA	NA	NA	NA
VEG79222.1\|1008198_1008426_+	transcriptional regulator	NA	NA	NA	NA
VEG79223.1\|1009225_1011001_-	Uncharacterised protein	NA	NA	NA	NA
VEG79224.1\|1011476_1012424_-	alcohol dehydrogenase	NA	NA	NA	NA
VEG79225.1\|1012659_1013595_-	peptidase, S9A/B/C family, catalytic domain protein	NA	NA	NA	NA
VEG79226.1\|1013851_1014811_+	oxidoreductase	NA	NA	NA	NA
VEG79227.1\|1014851_1015490_-	esterase	NA	NA	NA	NA
VEG79228.1\|1015566_1016637_+	methyltransferase domain protein	NA	NA	NA	NA
VEG79229.1\|1016742_1017300_+	phosphoglycerate mutase	NA	NA	NA	NA
VEG79230.1\|1017410_1019714_+	5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	NA	NA	NA	NA
VEG79231.1\|1019772_1020627_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA
VEG79232.1\|1020760_1021714_+	putative choloylglycine hydrolase	M1H8K9	Paramecium_bursaria_Chlorella_virus	1.0e-20	26.5
VEG79233.1\|1021769_1025000_+	glne	NA	NA	NA	NA
VEG79234.1\|1025141_1026104_+	aspartate carbamoyltransferase catalytic subunit	M1HQL8	Paramecium_bursaria_Chlorella_virus	9.3e-54	46.2
VEG79235.1\|1026103_1026523_+	aspartate carbamoyltransferase regulatory chain, allosteric domain protein	NA	NA	NA	NA
VEG79236.1\|1026519_1028016_+	putative dihydroorotase	NA	NA	NA	NA
VEG79237.1\|1028033_1028987_+	orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA
VEG79238.1\|1029122_1029947_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA
VEG79239.1\|1029949_1030921_+	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA
VEG79240.1\|1030929_1031625_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
VEG79241.1\|1031733_1031886_+	protein	NA	NA	NA	NA
VEG79242.1\|1032100_1033222_+	protein	NA	NA	NA	NA
VEG79243.1\|1033376_1034300_-	LysR family transcriptional regulator	NA	NA	NA	NA
VEG79244.1\|1034401_1035031_-	had superfamily hydrolase	NA	NA	NA	NA
VEG79245.1\|1035132_1036896_-	protein	NA	NA	NA	NA
VEG79246.1\|1036935_1038126_-	class I/II aminotransferase	NA	NA	NA	NA
VEG79247.1\|1038497_1039187_-	protein	NA	NA	NA	NA
VEG79248.1\|1039443_1039962_+\|protease	putative ThiJ family intracellular protease/amidase	NA	NA	NA	NA
1044744:1044760	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1310337 : 1354333

Prochlorococcus_phage(16.67%)

integrase,protease,tRNA,transposase

attL 1352995:1353054|attR 1356380:1356475

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG79543.1\|1310337_1310706_-\|protease	zn-dependent protease	NA	NA	NA	NA
VEG79544.1\|1310776_1311484_-	short chain dehydrogenase/reductase family oxidoreductase	A0A0K0KVL6	Prochlorococcus_phage	9.4e-11	28.9
VEG79545.1\|1311527_1313129_-	ABC transporter ATP-binding protein	A0A1V0SKJ1	Klosneuvirus	1.1e-51	29.3
VEG79546.1\|1313224_1313380_+	protein	NA	NA	NA	NA
VEG79547.1\|1313444_1315001_-	anthranilate synthase component I	NA	NA	NA	NA
VEG79548.1\|1315081_1315477_-	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
VEG79549.1\|1315610_1316381_-	imidazole glycerol phosphate synthase, cyclase subunit HisF	NA	NA	NA	NA
VEG79550.1\|1316555_1317104_+	thij	NA	NA	NA	NA
VEG79551.1\|1317104_1318274_-	2-vinyl bacteriochlorophyllide hydratase	NA	NA	NA	NA
VEG79552.1\|1318484_1319471_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
VEG79553.1\|1319493_1320045_-	ribosome recycling factor	NA	NA	NA	NA
VEG79554.1\|1320121_1320862_-	UMP kinase	NA	NA	NA	NA
VEG79555.1\|1321035_1321887_-	translation elongation factor Ts	NA	NA	NA	NA
VEG79556.1\|1321965_1322811_-	30S ribosomal protein S2	NA	NA	NA	NA
VEG79557.1\|1323165_1323654_-	def1	NA	NA	NA	NA
VEG79558.1\|1323660_1325757_-	long-chain acyl-CoA synthetase	A0A1V0SBX8	Catovirus	1.7e-44	26.1
VEG79559.1\|1325847_1326339_-	protein	NA	NA	NA	NA
VEG79560.1\|1326500_1327625_-	IMP dehydrogenase family protein	NA	NA	NA	NA
VEG79561.1\|1327752_1328973_+	isocitrate dehydrogenase	NA	NA	NA	NA
VEG79562.1\|1329221_1330853_+	protein	NA	NA	NA	NA
VEG79563.1\|1330930_1331620_-	peptidase M23B	NA	NA	NA	NA
VEG79564.1\|1332626_1333670_-\|protease	putative glycoprotease GCP	A0A0R6PI74	Moraxella_phage	7.8e-54	39.3
VEG79565.1\|1333666_1334260_-	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA
VEG79566.1\|1334237_1335119_-\|protease	metal-dependent proteases-like protein	NA	NA	NA	NA
VEG79567.1\|1335180_1335747_-	atpase	NA	NA	NA	NA
VEG79568.1\|1335767_1336739_-	DNA polymerase III subunit delta	NA	NA	NA	NA
VEG79569.1\|1336805_1338152_-	huti	NA	NA	NA	NA
VEG79570.1\|1338291_1340046_-	comec	NA	NA	NA	NA
VEG79571.1\|1340042_1340747_-	competence protein ComEA	NA	NA	NA	NA
VEG79572.1\|1340981_1343945_-\|tRNA	leucyl-tRNA synthetase LeuS	A0A2H4PQS0	Staphylococcus_phage	6.6e-199	42.0
VEG79573.1\|1343987_1344833_-	hisj3	NA	NA	NA	NA
VEG79574.1\|1344928_1345879_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA
VEG79575.1\|1345993_1346839_-	phosphoglycerate mutase family protein	NA	NA	NA	NA
VEG79576.1\|1346907_1348203_+	sam-dependent methyltransferase	NA	NA	NA	NA
VEG79577.1\|1348230_1348635_-	putative flavin-nucleotide-binding protein	NA	NA	NA	NA
VEG79578.1\|1348913_1349849_+	EamA-like transporter family protein	NA	NA	NA	NA
VEG79579.1\|1350232_1351201_+	protein	NA	NA	NA	NA
VEG79580.1\|1351243_1351813_+	peptidyl-prolyl cis-trans isomerase	A0A2H4UTF4	Bodo_saltans_virus	1.2e-21	42.3
VEG79581.1\|1352077_1352425_+\|transposase	transposase	NA	NA	NA	NA
VEG79582.1\|1352433_1353000_+\|transposase	transposase	NA	NA	NA	NA
1352995:1353054	attL	NA	NA	NA	NA
VEG79583.1\|1353130_1354333_+\|integrase	site-specific recombinase, phage integrase family	NA	NA	NA	NA
VEG79583.1\|1353130_1354333_+\|integrase	site-specific recombinase, phage integrase family	NA	NA	NA	NA
1356380:1356475	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134369

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection