CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134376	Aeromonas encheleia strain NCTC12917 genome assembly, chromosome: 1	12 crisprs	WYL,DinG,csa3,DEDDh,cas3,RT	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134376_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_1

140821-140945

Orphan

Consensus_repeat	Method
AACAAACCGGGTCGCACGCCGCGCATGATGAGTGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134376_1

>merge|LR134376|1|140821-140945|CRISPRCasFinder
AACAAACCGGGTCGCACGCCGCGCATGATGAGTGGCGGTGCAGGGCGATGAGTACCCGCCGCTCCCGTATGACGACAGCACCAAGCAGAAACAAACCGGGTCGCACGCCGCGCATTATGAGTGGC

>LR134376|1|1|140821-140945|CRISPRCasFinder
AACAAACCGGGTCGCACGCCGCGCATGATGAGTGGC	GGTGCAGGGCGATGAGTACCCGCCGCTCCCGTATGACGACAGCACCAAGCAGA
AACAAACCGGGTCGCACGCCGCGCATTATGAGTGGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG94657.1\|132452_133283_-\|HDOD-domain	unknown	unknown	gnl\|CDD\|370050
LR134376.1\|VEG94666.1\|141091_142453_+\|aminotransferase	unknown	unknown	gnl\|CDD\|180994
LR134376.1\|VEG94658.1\|133370_133790_-\|heat-shock-protein-HslJ	unknown	unknown	gnl\|CDD\|182470
LR134376.1\|VEG94656.1\|130502_132332_-\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
LR134376.1\|VEG94670.1\|146035_146941_+\|ABC-type-putrescine-transporter-permease	unknown	unknown	gnl\|CDD\|182646
LR134376.1\|VEG94664.1\|138553_138940_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
LR134376.1\|VEG94672.1\|147869_148598_+\|mosc-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
LR134376.1\|VEG94674.1\|153449_153977_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG94663.1\|137638_138502_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|366132
LR134376.1\|VEG94675.1\|154100_154556_-\|thioesterase-(4HBT)-superfamily-protein	unknown	unknown	gnl\|CDD\|183276
LR134376.1\|VEG94661.1\|136604_137069_-\|CreA-family-protein	unknown	unknown	gnl\|CDD\|368692
LR134376.1\|VEG94662.1\|137085_137535_-\|Protein-of-uncharacterised-function-(DUF962)	unknown	unknown	gnl\|CDD\|226914
LR134376.1\|VEG94660.1\|135537_136527_-\|D-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|240659
LR134376.1\|VEG94673.1\|149545_152524_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG94659.1\|134073_135435_-\|chaperone	unknown	unknown	gnl\|CDD\|236954
LR134376.1\|VEG94667.1\|142507_143605_+\|putrescine-ABC-transporter-periplasmic-putrescine-binding-protein	unknown	unknown	gnl\|CDD\|182645
LR134376.1\|VEG94665.1\|139403_140735_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
LR134376.1\|VEG94668.1\|143728_144808_+\|spermidine/putrescine-ABC-transporter-periplasmic-spermidine/putrescine-binding-protein	unknown	unknown	gnl\|CDD\|270377
LR134376.1\|VEG94671.1\|146937_147780_+\|putrescine-ABC-transporter-permease-PotI	unknown	unknown	gnl\|CDD\|182574
LR134376.1\|VEG94669.1\|144884_146039_+\|putrescine-transport-ATP-binding-protein-PotG	unknown	unknown	gnl\|CDD\|183226

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG94657.1\|132452_133283_-\|HDOD-domain	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	3.17291e-62
LR134376.1\|VEG94666.1\|141091_142453_+\|aminotransferase	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
LR134376.1\|VEG94658.1\|133370_133790_-\|heat-shock-protein-HslJ	gnl\|CDD\|182470	PRK10449, PRK10449, heat shock protein HslJ.	9.59897e-28
LR134376.1\|VEG94656.1\|130502_132332_-\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
LR134376.1\|VEG94670.1\|146035_146941_+\|ABC-type-putrescine-transporter-permease	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	5.89095e-151
LR134376.1\|VEG94664.1\|138553_138940_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	3.40241e-25
LR134376.1\|VEG94672.1\|147869_148598_+\|mosc-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	2.35373e-68
LR134376.1\|VEG94663.1\|137638_138502_-\|Uncharacterised-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	0.00779354
LR134376.1\|VEG94675.1\|154100_154556_-\|thioesterase-(4HBT)-superfamily-protein	gnl\|CDD\|183276	PRK11688, PRK11688, thioesterase family protein.	1.17646e-81
LR134376.1\|VEG94661.1\|136604_137069_-\|CreA-family-protein	gnl\|CDD\|368692	pfam05981, CreA, CreA protein. This family consists of several bacterial CreA proteins, the function of which is unknown.	1.87855e-73
LR134376.1\|VEG94662.1\|137085_137535_-\|Protein-of-uncharacterised-function-(DUF962)	gnl\|CDD\|226914	COG4539, COG4539, Predicted membrane protein [Function unknown].	1.13283e-15
LR134376.1\|VEG94660.1\|135537_136527_-\|D-lactate-dehydrogenase	gnl\|CDD\|240659	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	0
LR134376.1\|VEG94659.1\|134073_135435_-\|chaperone	gnl\|CDD\|236954	PRK11678, PRK11678, putative chaperone; Provisional.	0
LR134376.1\|VEG94667.1\|142507_143605_+\|putrescine-ABC-transporter-periplasmic-putrescine-binding-protein	gnl\|CDD\|182645	PRK10682, PRK10682, putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional.	0
LR134376.1\|VEG94665.1\|139403_140735_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	7.71202e-155
LR134376.1\|VEG94668.1\|143728_144808_+\|spermidine/putrescine-ABC-transporter-periplasmic-spermidine/putrescine-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
LR134376.1\|VEG94671.1\|146937_147780_+\|putrescine-ABC-transporter-permease-PotI	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	1.74514e-116
LR134376.1\|VEG94669.1\|144884_146039_+\|putrescine-transport-ATP-binding-protein-PotG	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0

>LR134376.1|VEG94665.1|139403_140735_+|glutamine-synthetase
MDSIKGWMESNRITEVECLFPDFTGNARGKIIPANKFLREGGMRLPEIIFTQTVTGEYPDDDSMIDPLERDMQLYPDPNTIRFVPWALEPTAQVIHDCFDINGKLIDIAPRSVLRRVLSFYEKQGWKPVVAPELEFYLVKRNEDPDYPLVPPVGRNGRPETARQSFSIDAVNEFDPIFEDMYDYCEAQELEVDTLIHESGAAQMEINFLHGDAIDLADQVFLFKRTMREAAHKHGIYATFMAKPMSEEPGSAMHIHQSLEDAEGSNLFGTDNGGNTELFMHFIAGLQKYTPAVTALLAPNVNSYRRLTFGESAPRNVQWGVENRTCGLRVPFSEASARRVENRFAGADANPYLALAATLACGYLGMMEKLEPMQEMKASAYDLPYSLPRSLEESLSHLEQCEPIKEMLGERFIRAFVAVKRKEYETYFGVISRWEREFLLLNV
>LR134376.1|VEG94664.1|138553_138940_-|RNA-polymerase-binding-protein-DksA
MCDFMTEDQLAFYKGQIERQIVELEDRLNSQASQAIATDTNEMADEIDRASIEEARRLELNRIEHDKLHLRKLKGALKRINEGEFGYCESCGDEISLKRLQARPESRFCVECQSTKEFNDTHVFRRVA
>LR134376.1|VEG94663.1|137638_138502_-|Uncharacterised-protein
MKWLIKLCLCLPLLAQAQTLTVKVPSRPINDLDNEYQLKLLELALNHAGQPFKLERVELNLNQYSLQQELRKGKTINVFWMGTSSTLESALIPIPIPLFRGLEGLRIAFIHRDAQEKFNQVGSLADLKVMKAAQGVGWADNKILELAGIPTYAGRYSNLFRLINDGDKLDFFPRGLVEVYAESHELLAQYPNLAIEQHLLLRYPFAEFFFVSPESPKLAKAIQTGLERAYADGSFMQFFRENPKVREALASANLEQRLTIPLVNPDMTPLLRSIPAQYWEYPPRQGQ
>LR134376.1|VEG94662.1|137085_137535_-|Protein-of-uncharacterised-function-(DUF962)
MKRLDDWFGDYGQSHRHPTNVAIHKVAVPGIYLCGLALLWCLPRGPLPFGLNWAILAAIPVLLFYLRLSRPLFWGMAGFTALGLVACALWQGPLLLPALVAFVLLWIAQFVGHRIEGKRPSFLADLQFLLIGPAWVLASLYSRLGLSYR
>LR134376.1|VEG94661.1|136604_137069_-|CreA-family-protein
MSYRHPLLLLVALLAGPALADKADPVGEVSTAFKLVGPNHKILVEAFDDPRIDGVACYLARPKTGGVKGGLGLAEDPSHASLSCHQIGPITLPAKLKAGEEVFDVSTSLVFKEQKVVRFYDKKRNALVYLTYSTKLVDGSYKSAVSAVPIMPWG
>LR134376.1|VEG94660.1|135537_136527_-|D-lactate-dehydrogenase
MKVAVFSTKSYDKEHFNQANSQYGFELEFFDVRLEAKTARLAHHFPVVCLFVNDDADRAVLTELAANGTKVIALRCAGYNNVDLVAAKELGLKVVRVPAYSPEAVAEHAVGLMMTLNRRIHKAYQRTRDANFSLEGLVGFNMHGRTAGIVGTGKIGIATLRILKGFGMRLLVSDPYPNQAALDLGAEYVDLDTLFRQSDVISLHCPLFKENYHLLNKEAFAKMKDGVMIINTSRGGLLDSNAAIEALKTARIGALGLDVYEEEEDLFFSDKSNEVITDDVFRRLSACHNVLFTGHQAFLTREALHAIADTTLSNVQAIEQQGRSDNEVE
>LR134376.1|VEG94659.1|134073_135435_-|chaperone
MFIGFDYGTSNCAVAVMEQGSPRLLTLSGSRYLPSTLHAPHRDAIAGLLAERLTPARQTEYLKLRGPVVTRAQAVRRQMREEGLIDELSFGNAALERYLEEPDDGYYIKSPKSFLGAYGLKAPQIALFEDIVCAMMLRVREEAEQQLGQPVRGAVIGRPVNFQGLAGEESNRQAIAILTEAARLAGFEQVEFLYEPVAAGFEFEARLSEDAVVLVVDIGGGTTDCSMLRMGPSHRDRLDRSGDLLGHSGQRVGGNDFDIRLTVEGMMPLLGMHETLKTGKPLPHPLFWDAAAINDVSAQSRFYSLDTARQLQDLQLDSQPGSKLARLACLRAHKLSHQLVWRAEQGKIALSDHQLNQQSLSELEKGLEAELSREQLASASAPLLEKIGELMDQAIAAAGVQPDRIFVTGGSARSPLIAAFIRQKLPTIPLEGGDDFGSVAAGLARYAERLFAN
>LR134376.1|VEG94658.1|133370_133790_-|heat-shock-protein-HslJ
MPRFLLLLLALLLLSACSSTPVFVQQDLQHHHWVLDKLDGQPIASARINPPDIEIGEHFTVNGIAGCNRYFGQGHLEGNRFWVTSLGSTAMACQPQLDSIEQAVIVTLMEGASLSGTPQTLILQGKRHRLEYQLRDWVY
>LR134376.1|VEG94657.1|132452_133283_-|HDOD-domain
MSMDRLFGKIKQLPTIPQLLHELMLSFSDENARIDEIAAKIAMDQVISVKVLRMANSAALRRGNEVTSIEQAVIRLGFNRLRSVVVASGIISSFKAPPSFDKNRFWTQTFQVATIARTLALQTKVVDAETAFTCALIHNIGELLIQSTLPEEAELISLAIEKGSSRVEAQREMLGYDYAQLGAELARRWNLSASFVDAISQQLDPLSYQPVSKEAVLIRLAVFVSFAWHAGVPAQAIIARFPTPLADQLGLDPSTLADQLEQLHEQGNALADLLTQ
>LR134376.1|VEG94656.1|130502_132332_-|maltodextrin-glucosidase
MTPPFLFHPQVAPWFKERADALLLTLFSELDSPIREVWLRHEPDNEEYLLAMTPVSTRDRLQVWQVELPLARGQDIHLYCFKCLTDEQQWWLHGAGVSAAMPPREQHFRFNSLHQPPAWVQDQVFYQIFPDRFCNGDPSLSVRHHEYEYRGKAVISKAWGEPVSRHEEGHAACEFYGGDLAGIDAKLHYLQSLGITALYLNPIFDSPSNHKYDTQDYYGVDPHLGSNAQFAELTRNLHQRGMRIILDAVVNHTSTEHPWFCPPLGAKSNPDSPWRSFYTFDQEGDYVSWKGIRSLPKLDFASAQVQDAVYRADNAILRYWMRTPYQIDGWRFDVIHMLGERGTAMGNRGHVRAIRGAVKQENPDAYVLGEHFFEASQWLQGDQEDGAMNYYGFAHPIRAFLAAQDIAYHPIRISAEELDSWLKLARAHIPFKNQLAQFNLLDSHDTARFLHLLGEDKQRMRLAATLLLTYIGVPSIYYGDEVGLSGGNDPDCRRCFPWETTDWDHVLHDHYRRLIQLRKQRPALRRGDIQTLYAGPHSYVFVRTLQSDQVVVACNRHPTEPRTISLPLWQTASPASRFTDAFNGDKFEVVQGQLQLTIPANSARVLLSS
>LR134376.1|VEG94666.1|141091_142453_+|aminotransferase
MQHTTREWQQLDASHHLHPFTDFQALNNKGSRIITKAEGVYLEDSDGRRILDGMAGLWCVNMGYGRQELVDAATKQMQQLPYYNLFFQTSHPPAAELATLLAEITPSHLNHVFFTGSGSECNDTVLRMVRHYWASKGQPDKQVIISRHNAYHGSTVAGASLGGMKGMHAQGGLPIPGIVHIDQPYHFGEGQGVSAHEFGLERARQLELKILELGVDKVAAFIGEPIQGAGGVIIPPDSYWPEIQRICDKYGILLIADEVICGFGRTGHWFASEDFGIKPDLMCLAKGITSGYLPMGAVMVGDRVAKVLVEEGGEFNHGFTYSGHPVACAVAIANIQLMQRESIVKRIHDSIGPYLQRRWSELADHPLVGETRGKGLVAALEIVQDKQTKRRFPAQQQAGMTCREFCFNNGLVMRAVGDTMIISPPLVITEEQVDELVKLARLSLDLTAAKLQE
>LR134376.1|VEG94667.1|142507_143605_+|putrescine-ABC-transporter-periplasmic-putrescine-binding-protein
MSFKTGMLTASVALVMVSTGAMADDKVLHVYNWSDYIAPNTLEDFQKETGIKVIYDVFDSNEVLEAKLLAGSSGYDIVVPSNPFLAKQIKAGVFQKLDRAKLSNWKNLDTTLLKALEPSDPGNLYSIPYLWGTIGYAYNIDKVKAVLGADAPVNSWDLVFKPENMAKLKECGVSFLDSPTEMLPAALQYLGFKPDSQKPDELKKAEELFLSIRPYTAYFHSSKYISDLANGNLCVAVGYSGDLQQSKSRAIEAKNGVNLTYVIPKEGAGSFFDMLAIPADAKNVEEAHVFLNYLMKPEVIAKISDAVSYPSGNKASVPLVSEAIRNDPGIYPSDEVLAKLYVFPDLPAKVQRLMTRSWTKIKSGK
>LR134376.1|VEG94668.1|143728_144808_+|spermidine/putrescine-ABC-transporter-periplasmic-spermidine/putrescine-binding-protein
MTKIATLALTLGFANLTQAAPVVHFYNWSDYIGETTLSDFQQKTGIKTVYDVFDSNETLEGKLLTGRTGYDLVVPSNNFLAKQIQAGAFQKLDPAQLPNMVNLDPLLLKQLDKVDPGHQYAVPYLWGTNGIGYNVDKVKAVLGVDKIDSWAIIFEPGNMEKLSHCGVAFLDSADEMIPAALNYLGLNPNSHDPADLKRAEEQLLKVRPYVAYFHSSKYIGDLANGDICVAAGFSGDILQAAARANEAGKGINIAYSIPKEGGNLWFDMMAIPADATNVKEAHALINYILEPQVIAKVSDYVGYANPNTKAGEYMEKRVRDDESVYPPQAVLERLYVQESHPRSVQRLITRSWTKIKSGT
>LR134376.1|VEG94669.1|144884_146039_+|putrescine-transport-ATP-binding-protein-PotG
MAIASSAYKKALEGSQQRKEVLVKIDRVSKQFDETLAVDNVSLNIHKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRLFLDGVDITDMPPYERPINMMFQSYALFPHMTVAQNIAFGLKQDGLPKAEVDAQVEEMLKLVQMTQYARRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSRMQLELVEIIERVGVTCVMVTHDQEEAMTMAERIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGLLVEDEQDHATIACADLEQPIYVGHGISSRAENKKVSYALRPEKLLMSTQKPSDLEHPDFNWTKGLVYDIAYLGGHSVYHIQLPSGKIVQAFIANAERHGKRPTWDDQVFLYWEDDSGVVLQS
>LR134376.1|VEG94670.1|146035_146941_+|ABC-type-putrescine-transporter-permease
MKALRRLKRLGGRQLVIGIPFFWLFLFFLLPFIIVVKISFAEADVAIPPYTDVVSWADDQLTILLHLGNYLLLQEDDLYIAAYLGSLKMALISTILCLLIGYPMAYSIARANKETQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNSLLMGIGLVDEPVQILNTNLAVYIGIVYSYLPFMVLPLYANLVKHDQSLLEAASDLGARNLTRFWRITVPLSKNGIIAGCMLVFIPVVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAVVMLAVLIVPIILFNRNQAKELEGKV
>LR134376.1|VEG94671.1|146937_147780_+|putrescine-ABC-transporter-permease-PotI
MKRFGFAKLMLWLGLLFIYLPMVIMVIYSFNASKLVTVWGGWSLKWYFGLLENKQLIGSVLRSLEIACYTAIAAVALGTTAAFVLTRIPHFRGRTLFGGLVTAPLVMPEVITGLSLLLLFVAMAQLIGWPAERGMLTIWIAHTTFCTAYVAIVVSARLRELDLSIEEAAMDLGAKPWKVFFLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLILLSVSLFTFGSWYLMAKAEKRRRAEIAMTTQMQAVA
>LR134376.1|VEG94672.1|147869_148598_+|mosc-domain-containing-protein
MRISLFIGQSAELNAELVPGLVSAIHKQAADRPLWCRFSGLDGDEQSDQRHHGGPDRALHYYPADHYPWWQTWQTALGLPAPRTPWQPAAFGENLSGLGLTEAQACIGDVYRLGEALVQVSQPRSPCFKLNQRFGYPHLSLVMQLNGRCGWLLRVLEEGWVAQDEELLLVDRPYPELTVKRTADILFNQVRNEGELQLLLDNPALSPNWRQHAAHWLEHGVVADWQKRLLGPVEFQLPTKGV
>LR134376.1|VEG94673.1|149545_152524_+|Uncharacterised-protein
MLVNKRWMTTLGALLTLGLLGATPVQAADPVGVQTTLEGCRKDAGFTFPDGGPYICPDTDYTTGNLGKTWNELDLVPYRITLQAGNSAPANQTYTLGVVLDNEDASRPGYDILSTPVLNLAKSSASCQAVQSTAQTPKAPGVGGTDVSIYRLITVTQAENTTCVYDYYGRLALGSHLFPGSSLHANLLAEDLGTGGAGARDVSIPVKEIEPQEISKTMTAHQGSEQTWNISKGTEDTLDFGNVCRSDAPESLPVQITVTWTKAEVIGGKVAVNIVLNAKNPAARTITIDLTDKLYKGSNNSGALLGTFNKGPFDLAAGFNGMVAEFTEEFDAATAGKVGDWLHNEVSGTYTDKATGIPVPGTTTAVADAQIQQGAVTNASTTIKDVEDIDGVGLMYAVGAPSFGGFLDGYLADTQTDGVVTWEATGLTDGGSITFDKEVYLDDPKRVTTGMLSDIAYLSASDGFIAQTDQLQIPIASSVKAKLTIQKSIPSFLDTGEKLEVTFHITRADDPTFSKTKVITFTGGGATTESVTAWGLVPDLYYVEEQGNMFFAAGSDTGEPANLVDKRDPAVYPNPRPVDLRLEEGIATHCAATADFQNEPGDRLALAQVQKTTEPLLESSDDDYDWTFSLYGPGGGLLSTQVVGAGAGYGMFQGAGGDLELLAEGTYTVVETTKTGWDLISADPDSVPKDQICDFTVDYPEDIGKTFSCSFLNRKLGRAQVLKTMNGLPDLGSYSFIFVLRQGATPSVNGLTLESMSANTGNGGTLAFTTALVPNQIYQICEIMLPGWLSNFGTFVPNAFMPPDGVVINPNVDNSILCGNFSVGPGETKVFTIDNTQPPGGRALTIGYWRNWASCAKSNGKQEPVLDQTLASFAGGGVYIGNLFVDTCQEAVRILSKQDVGTGKQKSSDPAFNMAAQLLAAMLNVQAGAGQCPNAVTAMVAGQAILNGPPPSYAVNFTGMGDYPKKGQFATEANNLATTLDQYNNNYLCTGP
>LR134376.1|VEG94674.1|153449_153977_-|Uncharacterised-protein
MSAMLATKPSRALLTQIELLLDEVHTPECRHWLEQELEGYSLCSPLPWYRIIACRQRGHFLDLKTGKYLTCHIGSQTLSQRDLAQVQFIYAREPAAHYLLRHDSGIEPWPEQLLEEYQEQLIPGHLCLQAWHEPVSSLRLQLMEGIEHFISEYPKHAALQTQHGFKALRHQHWHI
>LR134376.1|VEG94675.1|154100_154556_-|thioesterase-(4HBT)-superfamily-protein
MLKKMALSGIANLFAERMPFNKLIGMQVTHYDFDKVELRIKMEDKLIGNPFHNILHGGVTASLLDVAGGMIVAASCIDELEDFSPSYLKERFSRLGTIDLRVDYLRPGRGNEFIATAHIIRAGSKVAVARMELHNEEGTHIAFGTGTYLVG

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Crispr_ID: LR134376_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_2

321323-321414

Orphan

Consensus_repeat	Method
ATTCGTGTTCGAACATCAGGAACAGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134376_2

>merge|LR134376|2|321323-321414|CRISPRCasFinder
ATTCGTGTTCGAACATCAGGAACAGATGGGCCATGAACAGCATCGGATGAGAGCTGGCGCCGTTCATTCGTGCTCGAACATCAGGAACAGAT

>LR134376|2|2|321323-321414|CRISPRCasFinder
ATTCGTGTTCGAACATCAGGAACAGAT	GGGCCATGAACAGCATCGGATGAGAGCTGGCGCCGTTC
ATTCGTGCTCGAACATCAGGAACAGAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG94819.1\|317997_319701_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
LR134376.1\|VEG94813.1\|313247_314102_+\|alternative-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
LR134376.1\|VEG94830.1\|332071_332962_+\|general-secretion-pathway-protein-A	unknown	unknown	gnl\|CDD\|132060
LR134376.1\|VEG94818.1\|316991_317930_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|237500
LR134376.1\|VEG94812.1\|311833_312787_+\|cell-division-membrane-protein	unknown	unknown	gnl\|CDD\|182910
LR134376.1\|VEG94822.1\|322695_324207_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
LR134376.1\|VEG94816.1\|314903_315608_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|188194
LR134376.1\|VEG94831.1\|332958_334053_+\|fused-MSHA-biogenesis-proteins-MshN-and-MshD	unknown	unknown	gnl\|CDD\|274350
LR134376.1\|VEG94826.1\|328652_329246_+\|MSHA-biogenesis-protein-MshI1	unknown	unknown	gnl\|CDD\|377469
LR134376.1\|VEG94820.1\|319702_321235_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
LR134376.1\|VEG94823.1\|324699_326652_+\|regulatory-protein-CsrD	unknown	unknown	gnl\|CDD\|236833
LR134376.1\|VEG94815.1\|314232_314892_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238448
LR134376.1\|VEG94828.1\|329885_330230_+\|MSHA-biogenesis-protein-MshK	unknown	unknown	gnl\|CDD\|274166
LR134376.1\|VEG94825.1\|327691_328555_+\|MSHA-biogenesis-protein-MshI	unknown	unknown	gnl\|CDD\|227306
LR134376.1\|VEG94817.1\|315763_316999_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
LR134376.1\|VEG94811.1\|311162_311834_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
LR134376.1\|VEG94824.1\|326674_327622_-\|1-aminocyclopropane-1-carboxylate-deaminase	unknown	unknown	gnl\|CDD\|225313
LR134376.1\|VEG94814.1\|314131_314233_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG94829.1\|330300_331989_+\|msha-biogenesis-protein-mshl	unknown	unknown	gnl\|CDD\|274176
LR134376.1\|VEG94827.1\|329245_329893_+\|MSHA-biogenesis-protein-MshJ	unknown	unknown	gnl\|CDD\|309474

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG94819.1\|317997_319701_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
LR134376.1\|VEG94813.1\|313247_314102_+\|alternative-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	0
LR134376.1\|VEG94830.1\|332071_332962_+\|general-secretion-pathway-protein-A	gnl\|CDD\|132060	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. [Protein fate, Protein and peptide secretion and trafficking].	1.78487e-74
LR134376.1\|VEG94818.1\|316991_317930_+\|formimidoylglutamase	gnl\|CDD\|237500	PRK13776, PRK13776, formimidoylglutamase; Provisional.	2.14064e-180
LR134376.1\|VEG94812.1\|311833_312787_+\|cell-division-membrane-protein	gnl\|CDD\|182910	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional.	9.30942e-79
LR134376.1\|VEG94823.1\|324699_326652_+\|regulatory-protein-CsrD	gnl\|CDD\|236833	PRK11059, PRK11059, regulatory protein CsrD; Provisional.	0
LR134376.1\|VEG94816.1\|314903_315608_+\|histidine-utilization-repressor	gnl\|CDD\|188194	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators. [Energy metabolism, Amino acids and amines, Regulatory functions, DNA interactions].	6.91707e-97
LR134376.1\|VEG94831.1\|332958_334053_+\|fused-MSHA-biogenesis-proteins-MshN-and-MshD	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.05542e-07
LR134376.1\|VEG94826.1\|328652_329246_+\|MSHA-biogenesis-protein-MshI1	gnl\|CDD\|377469	pfam05137, PilN, Fimbrial assembly protein (PilN).	0.000234272
LR134376.1\|VEG94820.1\|319702_321235_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
LR134376.1\|VEG94822.1\|322695_324207_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.82805e-80
LR134376.1\|VEG94815.1\|314232_314892_+\|carbonic-anhydrase	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.34631e-121
LR134376.1\|VEG94828.1\|329885_330230_+\|MSHA-biogenesis-protein-MshK	gnl\|CDD\|274166	TIGR02500, Yop_proteins_translocation_protein_D, type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0.000358156
LR134376.1\|VEG94825.1\|327691_328555_+\|MSHA-biogenesis-protein-MshI	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	0.00106411
LR134376.1\|VEG94817.1\|315763_316999_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
LR134376.1\|VEG94811.1\|311162_311834_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	6.52768e-124
LR134376.1\|VEG94824.1\|326674_327622_-\|1-aminocyclopropane-1-carboxylate-deaminase	gnl\|CDD\|225313	COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism].	3.06864e-56
LR134376.1\|VEG94829.1\|330300_331989_+\|msha-biogenesis-protein-mshl	gnl\|CDD\|274176	TIGR02519, related_to_type_II_protein_secretion_protein, pilus (MSHA type) biogenesis protein MshL. Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures].	9.66541e-85
LR134376.1\|VEG94827.1\|329245_329893_+\|MSHA-biogenesis-protein-MshJ	gnl\|CDD\|309474	pfam04350, PilO, Pilus assembly protein, PilO. PilO proteins are involved in the assembly of pilin. However, the precise function of this family of proteins is not known.	0.000405086

>LR134376.1|VEG94820.1|319702_321235_+|histidine-ammonia-lyase
MFELNLLPGKLCLATLRRVSREPVHISLDPAALPGIHASAAVVTKVIEQNRVVYGINTGFGLLANTRIPVEQLDELQRSIVLSHAAGIGTYMDDATVRLMMVLKVNSLARGFSGIRLEVLEALMTLINAEVYPVVPKKGSVGASGDLAPLAHMSCLLIGEGKARHKGELMDAATALKIAGLKPISLAPKEGLALLNGTQASTAFALEGLFHAEDLFAGAITIGAMSVEAALGSRRPFDARIHEVRGQRGQIDAAACYRQLLVDGSEIGMSHHNCEKVQDPYSLRCQPQVMGACLAQIRHAAEVLVCEANAVSDNPLVFAEDEEILSGGNFHAEPVAFAADNLALAIAEIGSLSERRMALLIDSRMSGLPAFLVNNGGVNSGFMIAQVTSAALASENKSLAHPASVDSLPTSANQEDHVSMATFAARRLVDMAENTRGILAVELLAAAQGLDFRAPLRSTELIELAKGRLREQVSFYDKDRYFSPDIEAAAALLGAASYNDLIPAGVLPSL
>LR134376.1|VEG94819.1|317997_319701_+|urocanate-hydratase
MSEQHQDPRQDPSRVIRAPRGTTLTAKSWLTEAPLRMLMNNLDPEVAEHPQSLVVYGGIGRAARNWACYDKIVEVLTRLEEDETLLVQSGKPVGVFQTHKDAPRVLIANSNLVPHWANWEHFNELDKKGLMMYGQMTAGSWIYIGTQGIVQGTYETFFAVANQHFNGEPKGRWILTGGLGGMGGAQPLAATMAGFSMIAVECDETRIDFRLKTRYVDKKAHSLDEALAMVEEAKRSGSAVSVGLLGNAADVFAELVARGITPDVVTDQTSAHDPIHGYLPQGWSVAQWRALQKSAPQEVNQAARHSMARQVEAMLTLQSRGAATLDYGNNIRQMALEEGVKNAFDFPGFVPAYIRPLFCEGIGPFRWVALSGDPEDIYKTDQKVKELIPDDPHLHNWLDMARERIAFQGLPARICWVGVKDRVRLGLAFNEMVKSGELKAPVVIGRDHLDSGSVASPNRETESMLDGSDAVSDWPLLNALLNTAGGATWVSLHHGGGVGMGFSQHSGVVIVCDGSDDAARRVGRVLRNDPATGVMRHADAGYPIAIDCAHAAKLDLPMLAAAGKGEK
>LR134376.1|VEG94818.1|316991_317930_+|formimidoylglutamase
MAELNGIDMTVWQGRRDPEDGELALRWHDRVQPWQTDAAPGVALVGFACDEGVRRNKGRVGAASAPHAIRKLLANTAWHLGRPVYDGGDVACDDGDLDAAHNRLAERVASLLAEGHFPLVLGGGHEVAFGSWSGLNRHLAGKGRVGIINLDAHFDLRMKQEQASSGTPFFQIAEQCAAQGSPFHYACLGVAETANTQALFARADGLGVWYELDEAMTQRELPELLNGLDAFIARCDHLYLTIDLDVLPAAVMPGVSAPAARGVELAVIEPLIAHIRASGKLRLADLAEYNPTLDQDQRSARVAARLIHQLTK
>LR134376.1|VEG94817.1|315763_316999_+|imidazolonepropionase
MNKELLNCERVWLNVTPATLRPDLADYGLLEPHALGVHEGKIHALVPMQDLKGPHPAHWRDMKGRLVTPGLIDCHTHLIFAGSRAEEFELRQRGVPYAEIARKGGGILSTVRATRAASEDQLYELAVPRIKSLIREGVTTVEIKSGYGLTLADELKMLRVARRLGEALPIRVKTTLLAAHAVPPEYRDDPDSWVETICQEIIPAAAEAGLADAVDVFCEHIGFSLAQTEQVYLAADQYGLAVKGHMDQLSNLGGSTLAAHFGALSVDHLEHLDAAGIQALAHRCVVATLLPTAFYFLKETKLPPVEALRRAGVPMAVSSDINPGTAPIVSLRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQERLGQLRVGMQADFLIWNCAHPAELSYLIGVDQLVSRVLNGEETLHG
>LR134376.1|VEG94816.1|314903_315608_+|histidine-utilization-repressor
MAPALYLQIKQHILDGIRERHYQAGDRIPTEAALCDQFAVSRMTVNKALRELVAEGWLVRTAGSGSFVADRRAESPLLAIRNIADEIRERGSQYSARVIRLQRQAADEKVAVRLGLRVGAPTFHSLIVHEADGEPLQLEERFVDAERLPGYGEQDFTQQTPNSYLMEVCPLSEMEHVVEAVLPSAGEAGLLQVRVDTPCLLLHRRTWSDGYLVSYARLLSPGSRYKLSSKTRLI
>LR134376.1|VEG94815.1|314232_314892_+|carbonic-anhydrase
MKLLNDLFTKNREWAERLKAEDPEFFATLSAQQAPEYLWIGCSDSRVPANQLMGLLPGDVFVHRNVANLVVHTDFNCLSVLQYAVEVLKVKHIIVCGHYGCGGVRAAMKNEELGLIDNWLRNIKDVYFKYRDELDAIEDEHERHDYLCELNVAEQVANVCHTTIIQNAWRKGQELAVHGWIYGIKDGLLHDLDLCVSGPEQIPDVYRAWPDMRPPHRRR
>LR134376.1|VEG94814.1|314131_314233_+|Uncharacterised-protein
MALFLFRDYLVLPLASDTIEYGMLPPLTSRESR
>LR134376.1|VEG94813.1|313247_314102_+|alternative-sigma-factor-RpoH
MGTSLQRTMALIPQGSLEGYIQAVNSIPVLSAEEERELATRLQQDGDLEAARQLVMSHLRFVVHVAKSYAGYGLPQADLVQEGNIGLMKAVKRFDPSVGVRLVSFAVHWIKAEIHEYVLRNWRMVKVATTKAQRKLFFNLRKSKKRLGWFSHDEVQAVAADLGVSPTDVTEMEARMSNYDQAFDLVGDDEDEGGFAPVHYLEDKSSDLAATIENDNWDSHASRRLSAALATLDERSQHIIRARWLDEESKTTLQELADTYGVSAERVRQLEKNALKKLKDAMDA
>LR134376.1|VEG94812.1|311833_312787_+|cell-division-membrane-protein
MAIVRHKQPLLRRLGMYWVDHARQAFSSMGELWRNPLASLMTLAVLGVSLALPSCFHVLLKNAEVVEGSWQTSSQISLYLRKDLPEQSILDMKQRILLYPEVESVTYMSRDEALKEFREISGFGDALDYLDSNPLPPVLSVIPDPRWQNPEGAAELLAKLENEPGVEQGKLDLQWLTRLQGIMNLLRHTITGIAVLLLSAVLLIVGNTLRLNILNQRSEIEVLKLVGATDAFIHRPFLYTGIWFGVIGGMLAWWLTEVMVIWSEGVVKELAGLYNSNFRLVGMGAVDGFNLILLGALLGLIASWFSVHRHIRDIEPS
>LR134376.1|VEG94811.1|311162_311834_+|cell-division-ATP-binding-protein-FtsE
MIRFDKVSKVYSGGHQALQKVSFHLRKGEMAFLTGHSGAGKSTLLKLISVMERPTDGRVFFHGDDVSQIKRGQIPYVRRQIGMIFQDHRLLMDRTVFDNVALPLVIDGYSHGDINKRVAAALDKVGLLGKERYQPRMLSGGEQQRVGIARAIVNKPPLLLADEPTGNLDPQLSMDIMRLFEEFNRFGVSVLIATHDLGLIARMRYRTLTLKAGRMYSQEQEES
>LR134376.1|VEG94822.1|322695_324207_-|EAL-domain-containing-protein
MKRISPFWISPLLLVLPILICLSLSRLTGDMLAHYLLQQKRAEIETTMAERQQALEEGIDDQLVQFAFDCGEQDMNLLRDPKHYNRHIRLQGLRLASGKGCSSLGPDLPLIDADSLSETADSTFGLTATAPEYDTEQELVVFFKRQGNLAYWVLSNSWSHTILQQPCAGCFYLEFTPLVPGISRHKLFPRGEQAIREEADSQSLSFTPTSSKMQQTLWAGRALREHALALAFKGGLWAGTALGGLLLVCYWLLRNYRRSLKGLLHTGLARQEFVPFYQPIVDSRTRRVVGFEALLRWRRGGEFTSPGAFIAYAEEQGLILPMTEQLLDRVIADLPQLAPEQWVSVNLVAAHIEHSLLRDQLQRYDWPSPTRLTFELTEREPIVDIAAATHEITLLQEKGYHFKLDDFGTGYGGFAYLQQLGIRQIKIDKMFVDSIGTDDPKRNLLDAIIAFGLKSDMEMIAEGVETQEQVDYLGQHGVYLIQGYLFARPMPLHELLEWQQGHR
>LR134376.1|VEG94823.1|324699_326652_+|regulatory-protein-CsrD
MLSATERHMKLTTQLVSFITLCVIAAMTMVLLGGVFSFRQMGMELQQNRVDSLVEIIDKQLGAADDPQDLARWLPSLLRSAHVVELEIRQDKQRVYWFRDVQQQTDESLLIPYSQTIPHQLGMQADFKLDRPFKEFEYSMQAMSGISFGVFIVVFGLWYSIRWLRLQLRGAELLAERAQLILDGKLTKLAHDPADEWPASASQAIDHLLAELADARKERSRFDNFIRSNAFVDKATGIGNRLFFDNRLESAIMEASVISGGVLLIELAGLEELDPELTGRQSQELLMEASASIGTFVRKHNGALQARYAGQVFAVLLPNMSESEMVDGASQLLKSLQRLHWPESVNAETAVYLGAVCYQGRDSLLKVQEEAELALKSARLQGHTGWFLYEKLLDEEPSSKGTVRWRTLINRRIEEQGIYFYLQPVQQERDQVVLQQELSIRIRDEQDRELQAGVFMPMAEKAGLLLPLDKLVVAQTLRLLRQRQEPSCPISLSLCAQSLLNREFQRTLFFDLFQLPRSINENLVLQLSEAQVTRHYEALKRPLRALRMLGCQLAIDHAGQDVVSTQYIKEFEINFLKLHPSLVREIHSRQVNQMAVRSLVGGCANTQTRVIAVGVESGDEWKMLRHLGVHAGQGPWFAEPTWLVMDTAEA
>LR134376.1|VEG94824.1|326674_327622_-|1-aminocyclopropane-1-carboxylate-deaminase
MKNDTISANALPREGAQGVAGRIPSPLHQLQHPLLDAQGVRLWCKRDDLIHPLLSGNKWRKLKYQLQQADALGKTRLISFGGAYSNHIHALAAAGHLTGLRTTGIIRGEPEAVSNATLSAARGWGMELVFVDRQSYRRRQDPDWLAQFMVPDSLLVPEGGSGPLAIPGVAELVAEVPFSPDLWVLPCASGGTLAGLVAGKRAQEQILAIAVLKGGGFIHDEVCRLHPAAAGTAGWRIALDHHDGGYAKFSPALWQWVQAFSAQTGLPLEPIYSGKAMWGLFRELAAGHIPRGSEIVFIHTGGLQGLAGLREQGRL
>LR134376.1|VEG94825.1|327691_328555_+|MSHA-biogenesis-protein-MshI
MKSLFRRSPPAHQVGLLLASDRILLACVGQPPVFTSRAINGPHEWQQAMGELFNQHGLAKSKVRVALAASLYQQIQIDKPAVPDAEMAGALPWAIKDFVNEPVLQLAMDYVDLPTPPAGRPRINVICVPKSRVQQLVEAVNGVASLEAIVSDELAMTALYEADQSVRMLLWQPRGQDLQLLVFHQGGLCFSRQLRGFGALTGAQEPDRDLLDGLTLEIQRSLDYLAGQLKLPEPGQMQLAIGSPFIGTLVRHLEQAFGFPVSAMANKAILAGVEYLSAYGAALGAES
>LR134376.1|VEG94826.1|328652_329246_+|MSHA-biogenesis-protein-MshI1
MKRHINLYGPEFRPRRQWASLNQMALAWGIGLVLMLIVGLGYAWQQQGVSRELAQVRAALDVRRGEAKRLDAELARHQADGLLQQQLIARQEELSAMQGLMRQLGSLSLQKSQGYAGVMADLARLRDPRLSLQRIEISGGHINLSGFAERSQDVPAWVNRFKQTPSLAGKQFGELTLSRDKEGRLAFQLSGIAQEKP
>LR134376.1|VEG94827.1|329245_329893_+|MSHA-biogenesis-protein-MshJ
MDMKAQWQAWAQQVAAFSLRERAMILLTGLILLGAAGIYGWLDAADTRLSQDRLALTAAQRDLEILDLENQGKQARLARDPDAQVREQLGQVETSLGRLDAELKAQTVDLIPAHEMPAVLEALLSRSANLHMLALSSLKPEPLMAGEQSVNLFKHGIRLELEGGYFDVYQYLKALESLPRHFYWQGFDYRVIAHPKAAVAMEIYTLSTSKEFIRG
>LR134376.1|VEG94828.1|329885_330230_+|MSHA-biogenesis-protein-MshK
MAKWLTTYGAGFIWLALWACLLSPQARAEVLQDPTAPLAGMSTGAAPDKGAGLPRLQSIILGNGPALAVLNGQSYRVGQLIEGYRLLSISADAVVLEKAGKRQALTLFGSKIRM
>LR134376.1|VEG94829.1|330300_331989_+|msha-biogenesis-protein-mshl
MKKHHLCLLPLALAVAGCTTYKHPDPVQAKDALKQAMTEQNQTSPLTTLPPSVQSELLQLDRIPQPVAVPEKRLRIAAHDVDAVEFFGSLFKGSRYSVAVHPGVAGSISVELKDVTLQEALAVVGDMYGFDVQRKGNVFHVYPAGLRTETIPVNYLMMSRRGLSRTSVSTGGVTANDSNDNGNNNNFDSGNNNSSSNNNNNGSNNGSSSNGNSDNSNGTRIETDSNNDYWTDLREALQTLIGTGEGRAVITSPQAGLVTVRAYPGELKAVRDFLEQSGEHLKRQVVLEARILEVALNEGYEQGVDWNGLSATWDGNKGIIGGGSLGGSQVGASNPIFNTIGGGAGFKISDGNFVVAVDLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYFVTNASTTTTTSGNSAPIVTPNVELTPFFSGIALDVTPQIDEAGRVLLHIHPSVIDTEEQSKTINVGTADPLVLPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWVGEAFTNRSESTKKVELVILLKPTVVEKDTWQKELQRSSELLDKWYPPED
>LR134376.1|VEG94830.1|332071_332962_+|general-secretion-pathway-protein-A
MYLSHFGLREAPFGLTPNTGFYYGLPPHEEALQVLNWALAQGEGFIKVTGEVGTGKTLLCRKLLGELGSEARPVRLAWLPNPHLTPGELRAALALELGLSMRDQGELDLTDRIHRHLIALHQQGQRVVVLIDEAQALPDETLEAIRLFGNLETESSKLLQIVLFGQPELDARLARPHLRQLRQRIGFSYCLRALRVDETRAYVDHRLQVSGYRGAPLFEGRALRLLWRASRGVPRLINVLAQKCLMLAYGRGMRRIGPRLVRLAIRDTEDASRGSLVRWWPLLLLLGAALAYGVWP
>LR134376.1|VEG94831.1|332958_334053_+|fused-MSHA-biogenesis-proteins-MshN-and-MshD
MSVINQMLKDLEQRQQGEGTAIYVAPVRQQGWWMLVLTLLCGLALGILGWRSWIYWQQSQRVDPPVTQIDAPLAPDAIVQAASVASMTQEPAAVAVALPVPQGMPDEPVQSTSAPIAEAPAPQELPDQEGDYLIPSDEELQPDLQAELAAEQEAVMAPPPRKPGILKIETVELSAPELAALAERKATTAMAKGQLREAQDNYYQVLAHDPHNQGAREQLAALLYGEGRLTEAGQVLEEGLSLAPQQADFRLLLARVAIGAGDRPKALGWLSGLQPEIANNLDYYATWAGLAQELGQNAEAADLYVKLLRQQPDQGRWWLGLGVAEDGQGHGQRALDAYRNAQLHGNLGEASARWLEQRIAQLAP

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Crispr_ID: LR134376_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_3

949077-949183

Orphan

Consensus_repeat	Method
CACAGAGACGACATGGTGCTGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134376_3

>merge|LR134376|3|949077-949183|CRISPRCasFinder
CACAGAGACGACATGGTGCTGCTGTAAGGCGGCCGGATCAGATAAAACTGGTGTAGGGTCATGGCCAGGGTGCCGTGACCATTCACAGAGACGACATGGTGTTGCTG

>LR134376|3|3|949077-949183|CRISPRCasFinder
CACAGAGACGACATGGTGCTGCTG	TAAGGCGGCCGGATCAGATAAAACTGGTGTAGGGTCATGGCCAGGGTGCCGTGACCATT
CACAGAGACGACATGGTGTTGCTG

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG95388.1\|952735_953251_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349971
LR134376.1\|VEG95381.1\|946150_947419_+\|fermentation/respiration-switch-protein	unknown	unknown	gnl\|CDD\|235337
LR134376.1\|VEG95380.1\|945510_945978_+\|xanthine-guanine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
LR134376.1\|VEG95379.1\|944962_945052_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG95375.1\|940438_941521_+\|oligopeptide-transport-ATP-binding-protein-OppD	unknown	unknown	gnl\|CDD\|223521
LR134376.1\|VEG95373.1\|937508_938552_+\|ABC-type-oligopeptide-transport-system,-permease-protein	unknown	unknown	gnl\|CDD\|226690
LR134376.1\|VEG95377.1\|942721_942841_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG95387.1\|951952_952693_+\|ABC-type-amino-acid-transporter-periplasmic-binding-protein	unknown	unknown	unknown
LR134376.1\|VEG95393.1\|959346_960306_+\|nitrate-transporter-component	unknown	unknown	gnl\|CDD\|223673
LR134376.1\|VEG95386.1\|951317_951749_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
LR134376.1\|VEG95389.1\|953568_956196_+\|nitrate-reductase	unknown	unknown	gnl\|CDD\|239155
LR134376.1\|VEG95374.1\|938634_940452_+\|oligopeptide-binding-protein-OppA	unknown	unknown	gnl\|CDD\|173862
LR134376.1\|VEG95378.1\|943119_944571_-\|aminoacyl-histidine-dipeptidase	unknown	unknown	gnl\|CDD\|349885
LR134376.1\|VEG95390.1\|956218_956977_+\|uroporphyrin-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
LR134376.1\|VEG95385.1\|950621_951257_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379310
LR134376.1\|VEG95384.1\|949212_950466_+\|gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234685
LR134376.1\|VEG95376.1\|941517_942519_+\|ABC-type-oligopeptide-transport-system,-ATPase-component	unknown	unknown	gnl\|CDD\|236898
LR134376.1\|VEG95391.1\|957103_957688_+\|response-regulator-NasT	unknown	unknown	gnl\|CDD\|377145
LR134376.1\|VEG95392.1\|957976_959332_+\|nitrate/sulfonate/bicarbonate-ABC-transporter-periplasmic-protein	unknown	unknown	gnl\|CDD\|372585
LR134376.1\|VEG95382.1\|947481_947874_+\|DNA-binding-transcriptional-regulator-Crl	unknown	unknown	gnl\|CDD\|182882

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG95388.1\|952735_953251_-\|RNA-methyltransferase	gnl\|CDD\|349971	cd18098, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.7479e-56
LR134376.1\|VEG95381.1\|946150_947419_+\|fermentation/respiration-switch-protein	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
LR134376.1\|VEG95380.1\|945510_945978_+\|xanthine-guanine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	3.14216e-102
LR134376.1\|VEG95375.1\|940438_941521_+\|oligopeptide-transport-ATP-binding-protein-OppD	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.81507e-178
LR134376.1\|VEG95373.1\|937508_938552_+\|ABC-type-oligopeptide-transport-system,-permease-protein	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	7.94243e-106
LR134376.1\|VEG95393.1\|959346_960306_+\|nitrate-transporter-component	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	7.60961e-50
LR134376.1\|VEG95386.1\|951317_951749_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	5.0045e-35
LR134376.1\|VEG95389.1\|953568_956196_+\|nitrate-reductase	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
LR134376.1\|VEG95374.1\|938634_940452_+\|oligopeptide-binding-protein-OppA	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	3.37184e-168
LR134376.1\|VEG95378.1\|943119_944571_-\|aminoacyl-histidine-dipeptidase	gnl\|CDD\|349885	cd03890, M20_pepD, M20 Peptidase D has specificity for beta-alanyl-L-histidine dipeptide. Peptidase M20 family, Peptidase D (PepD, Xaa-His dipeptidase; X-His dipeptidase; aminoacylhistidine dipeptidase; dipeptidase D; Beta-alanyl-histidine dipeptidase; pepD g.p. (Escherichia coli); EC 3.4.13.3) subfamily. PepD is a cytoplasmic enzyme family characterized by its unusual specificity for the dipeptides beta-alanyl-L-histidine (L-carnosine or beta-Ala-His) and gamma-aminobutyryl histidine (L-homocarnosine or gamma-amino-butyl-His). Homocarnosine has been suggested as a precursor for the neurotransmitter gamma-aminobutyric acid (GABA), acting as a GABA reservoir, and may mediate anti-seizure effects of GABAergic therapies. It has also been reported that glucose metabolism could be influenced by L-carnosine. PepD also includes a lid domain that forms a homodimer; however, the physiological function of this extra domain remains unclear.	0
LR134376.1\|VEG95390.1\|956218_956977_+\|uroporphyrin-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	6.07182e-107
LR134376.1\|VEG95385.1\|950621_951257_+\|Uncharacterised-protein	gnl\|CDD\|379310	pfam13645, YkuD_2, L,D-transpeptidase catalytic domain. This family is related to pfam03734.	3.43891e-96
LR134376.1\|VEG95384.1\|949212_950466_+\|gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
LR134376.1\|VEG95376.1\|941517_942519_+\|ABC-type-oligopeptide-transport-system,-ATPase-component	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	1.93033e-154
LR134376.1\|VEG95391.1\|957103_957688_+\|response-regulator-NasT	gnl\|CDD\|377145	pfam03861, ANTAR, ANTAR domain. ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	2.71188e-16
LR134376.1\|VEG95392.1\|957976_959332_+\|nitrate/sulfonate/bicarbonate-ABC-transporter-periplasmic-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	4.65447e-109
LR134376.1\|VEG95382.1\|947481_947874_+\|DNA-binding-transcriptional-regulator-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	9.38674e-64

>LR134376.1|VEG95382.1|947481_947874_+|DNA-binding-transcriptional-regulator-Crl
MSERVTYKRLLRQFAAIGPYLREDLCEEGRYRFDCLSVCISAKPAPDKREFWGWWLVLEQQDHSFSYHYQFGFYNADGEWLNKPLPKKHQVEVERTLNHFYKLISAKLTALECQLTPAEQVTNELSVTAA
>LR134376.1|VEG95381.1|946150_947419_+|fermentation/respiration-switch-protein
MEPNNDTNLTEKLFTRIKKVLETSEISNSSPVEEQDSSLAESFIDGALSPHWYRLLRRPAWAWQGANPVEVEQTLACIAMGQGERSHERYLDTIKGYVPGNWVYEWSQLAGRYFNQGRELVTQGDTAGALKNLLKAVRYYSIASYPHLKNDELADQAQLLGNMAYREAGRLFKVPLKELLVPFRGKTIQGYLHLPTTDKPVPLVIVSGGIDSLQVDFLNFYFKCLEPHGIGMLSLDMPGIGYAEHWPLVQDTSRLHQAVLNHLSEVAWVDHQRIAMVGFRLAGNVAARLAFVEPFKLRTVVCIGAGINQVFTNQEMFARCPRMMRDGLANRLGADAAQWDLLRTKCQVFSLKTQGLLGSRTSVPILSIGHKRDFICPEQDVRALAAASRNGKAVVFDKQPLLEVYDAALKETVDWLKQHLCT
>LR134376.1|VEG95380.1|945510_945978_+|xanthine-guanine-phosphoribosyltransferase
MPKKFYVSWDNLQREARRLARRQLPVSQWKGIIAVSRGGLVPAALMARELGIRNVETLCISSYDHNNQRELVVVKGATTAGDGEGWLVVDDLVDTGGTAKAIRDLYPKAKFITIFAKPMGEPLVDDFEVAIPQDTWIEQPWDMALEFANPICDEE
>LR134376.1|VEG95379.1|944962_945052_+|Uncharacterised-protein
MSGSNSTYWFAQSLYTQGFNYPNPYASRR
>LR134376.1|VEG95378.1|943119_944571_-|aminoacyl-histidine-dipeptidase
MAQLSSLSPQLIWQFFEQICSIPHPSKHEAKLSAWIVQWAQGEGLAVKQDAVGNIIIKKPATPGMENRKAVVLQAHIDMVPQANADTQHDFATDPIDAYIDGDWVTARGTTLGADNGMGMAGCLAVLADKTIKHGPLEVLLTTDEETGMTGAFGLEAGWLEGEILLNTDSEEDGEVYMGCAGGVDANIRFPLELVAATEGEGFELQVKGLRGGHSGVDIHRGRGNANKLLVRLLKAAEPLGVRLAEISGGTLRNAIPREARAKLLVPTASVNEFKALVDRYAGIYQSELAATEANLTLLLNAQDKPAKLLSESLQARLLDSLMACPNGVIRMSDAIPGVTETSTNLGVIKTLEGEVYVQCLIRSLIDSGRENVEQMTSSLFKLAGASCEFTGAYPGWAPNVDSPVMALVRNSYQTLFGEMPNVMVIHAGLECGLFKSAYPDWDMVSFGPTIRGAHSPDEKVHIPAVERFWQLLVHVLEQIPAK
>LR134376.1|VEG95377.1|942721_942841_-|Uncharacterised-protein
MFENLAVLFHLKGATSKKGAEEKDTYAPSTRQYYFRYGA
>LR134376.1|VEG95376.1|941517_942519_+|ABC-type-oligopeptide-transport-system,-ATPase-component
MTALLSVRDLKQHFQLGGGFLRKKYTVYAVDGISFDLKQGETLGLVGESGCGKSTLGRSLLKLFEPTAGQISFEGRDITKLSAREMRSLRQEMQIVFQDPAESLNSRHTVGQILEEPFIIHGKGSTEQRREWVLELLDKVGLPKSAVDRYPHEFSGGQRQRIGIARAIALKPKLLVCDEAVSALDVSVQSQIVNLLLSLQREMNLAIIFIAHDLSVVKHISDRIAVMYLGRIVELAEAQQLYLHPRHPYTQALISAIPVPDPRRRNQRILLTGDVPSPISPPSGCHFHQRCPYATELCHGTSPELRICDGVAHQVACHFPLPVTEAVPLGKAI
>LR134376.1|VEG95375.1|940438_941521_+|oligopeptide-transport-ATP-binding-protein-OppD
MRIIEKGEAMAETQAPILDVRENGGKFTADGGQGMVPILEVSDLEVEFAVDDGKIKVLDGVSFKVAPGQTLGIVGESGCGKSVTSLAIMGLLPRPHGQVVAGSIRFQGEELLTLAPDQMYKVRGNRISMIFQEPMTALNPVQTVGDQLMEVFSLHRPDFSKAQRKEAAIAMLQKVGIPEPAQRFAVYPHNLSGGMRQRVMIAMALACEPDLLICDEPTTALDVTIQAQILDLMKALQAQTGMAIIFITHDLGVVAELCDEVVVMYAGRAVERADIFELFDHPRHPYTHGLMASIPRLEDVPKSLLKTIKGQVPALHEMPAGCRFSNRCPHATELCVRVIPATEQLTERHGVACHHWKELI
>LR134376.1|VEG95374.1|938634_940452_+|oligopeptide-binding-protein-OppA
MKNKIKWIGALFLLVNGSWVWAASLPADLKWETNDTDPTFVSPKALPGGTLNLFIDSFPLTFRTVGPDSNGSFRSFIQDNQLRLISFHPNTGNPIPSLASAWAIAPDSQTVYFKLDPRAKWSDGKPVTADDYTFGYEMMRSKDIKGPWFNNYYTTEVVAVEKVDDHTILVKAGSRKARLDLLNTTELWPQPKHYYKMGPNWVKQYNWALVPTTGPYVMSEVKKGKSITFSKQQNWWAQNDRYNQHRFNIDRIKVQVIRDHNIAFRHFLKGELDTFEMILPNWWHEKAVTPEYKKGYVQKVMAMTDTKQGGQGVHLNVANPKLADVNVRLGIQHAMNLDKMIATVLHGDYDRATTFGSGFGEFTDIKLPERAYDITKAREYFARGGYNKPGPDGILQNDKGERLTLALTYTSQEHSKRLTVLKEEAKKAGLDLELNLVDGATGFKVMLEKKHEAAWLGWGGGGLYPQYWESFHSANANKPQTNNLFNVADKELDALIDAYNVEFDMTKRAEISRQVQQRIYDLAIFVPGVQLNYVRASSWRHVMLPEVPATRNTPDLLYWPMDGYPHSSGGLLWIDPKVQEETRKAKDAGEALAPITLIDKTYAHH
>LR134376.1|VEG95373.1|937508_938552_+|ABC-type-oligopeptide-transport-system,-permease-protein
MNLNPVTLKKLKRFKSIKRGYYSFVIFSVLVVISLLAELLVNSRALAVSYQGEIYFPTYGDVIPGQHFGLDYEYETNYRQLQAKLAQEAKGDWVLLPLVPWNPYEQDFKEEAYPPYAPNLAERHFLGTDTSGRDVLARLVYGFRIAIGFAFITLVASYVIGVSIGCMMGFLGGRFDLVLQRFIEIWSQVPFLYVIMILVSLAKPNFGLFVGINVLFGWMGITWYMRTLTYKERARDYVMAARAQGATTRRIIFNHILPNTLMMIVTLAPFAVVGNISTLTALDYLGFGLAPPTPSWGELLSQGINNLDAIWIVSSVVVAVSLVLIMVSFIGEAIREAFDPRKFTRYQ
>LR134376.1|VEG95384.1|949212_950466_+|gamma-glutamyl-phosphate-reductase
MSLEKMGQAAREAAYQLATISTAQKNRALAAIADELEARGEQILAANAKDIAAGREAGLAEAMLDRLLLNPERLAGIVADVRKVIVLDDPVGAEIDSRVLENGLRLSRRRVPIGVIGVIYEARPNVTIDIASLCLKTGNASILRGGRETFHSNLELVRVIQHALAASGLPIGAVQYIDNPDRALVGELLRLDRYVDMIIPRGGAGLHKMCKENSSIPVIIGGFGISHIFVDESADLLRSLAVIDNAKVQRPSACNSLDSLLVHERVAPRLLPQLVKLMNERKVTLVGAANAMALLAGADNLCEAGPEDFDTEWLGLTLGVKLVAGVNEALAHMREHNAGHSDAILTNDLANAERFVNGAGSAAVYVNASTRLTDGGQFGLGAEVAVSTQMLHARGPMGLTELTSYKWVGLADYLSRA
>LR134376.1|VEG95385.1|950621_951257_+|Uncharacterised-protein
MKRTNWMTRLGVLWLSLPLLLGALCFSGAGHASWDQDLYRQLGLAGKLDKQVFRKALQGYQDVRHKRKAILTIIDYSRPSTQRRLFVIDVKRHKLLYHTWVSHGRNSGELAARQFSNQLNSRQSSLGVYRTAETYQGKHGYSLRLDGLSPGKNSNARRRAIVVHGADYASPRHLLKFDKLGRSWGCPALPREQSRAIINIIKEGSVIYAHG
>LR134376.1|VEG95386.1|951317_951749_-|universal-stress-protein
MPTIKSLLCPVDFSEMSKAVLDYAVFMAQSHQAELKLVHVVDQLHGFDSYKILHMTAIEITHEMERQAKTQLKELIADLAVPATFEVRFGRAADEIVIQAKEDKVDLVVMGSHGRSGISHLLVGSVAESVVRHAPCPVLVVRK
>LR134376.1|VEG95387.1|951952_952693_+|ABC-type-amino-acid-transporter-periplasmic-binding-protein
MVRPLLLLLCCLLLPWSARADVIHVYCDDWPGFCQNDGRGVYLDIVRAIYEPEGYRIHPHIVPYKRALAVVAQKGGDMAMGVYLGEVQGVHQPSYPASADDVTVLMLKKWLPLWAGEVSLQGQDVLWLRGWAFDKFIPVPMRWHEIDDHALAMQLLAKERYRYYLTAGVLYPKGELPSDMSRIFLRWVPTYPIFADTERGQQLRQHWDPGMRRLLGGGTLAEIYRNNQLYDYYRAFIKEQEARVAK
>LR134376.1|VEG95388.1|952735_953251_-|RNA-methyltransferase
MKESDYDGANTVDTASAEHAGPAYCCIGLVNPKSPENVGAVMRAAGCYGADEVYYTGSRFELARRFATDTKQMVEKIPLLGVEELLAFVPEGCTPVLVDLIEGATSLPDYVHPERAFYIFGPEDGTLDPARYEAVKEVIYVPTRGCMNLAASVNVILYDRLAKRLRAGLTE
>LR134376.1|VEG95389.1|953568_956196_+|nitrate-reductase
MNTTCAYCGVGCGIRLSREGDEWQLQGDERHPANAGALCVKGASLLESLDFPDRLLYPRWQGQRIGWDQALDTLADRFAAILAESGPAAIGIYLSGQLTTEDYYVANKLMKGYLGSANVDTNSRLCMSSAVAAHQRAFGEDLVPACYEDLELADLVVLTGANTAWTHPVLFRRLQQARARRPELKLVVLDPRRTMTAEQGDLHLALKPGSDVALWNGLCRYLLDSDGWDKAYVAQHVSGFAELAAALDDPAWQLEAVAQSCDLAPGDLLGFYRLFARTPRTVTLFCQGINQSNQGVDKANAIINAHLLCGRIGKPGAAPFSMTGQPNAMGGREVGGLATQLAAHMGFGEEECDRVQRFWQSPTIVRGPGHKAVALFDAVHRGEIRALWVLGTNPAVSLPDGNRVREALARCELLVVSEVTADTDTARLAHLLLPAAAWGEKSGTVTNSERTISRQRSFLPLPGEARPDWWALTQLARRLGFGEGFAYEHEYDIFSEHAALSGFENEGARQFDISGLAGLSRAEFEALEPLSWPVNAAWPRGRARLFEDGRFPTPDGRARLLPLAQHFPPQPAVVTAPVGTIPLLLNSGRLRDQWHTMTRTGHVPRLQEAEPWPKLRVGAASLLALGLAEGELVRLSNGLGEARLLIGLDEGLREGEAFLPMHWTDSQCSQGAVNRLIAAVVDPLSGQPMFKQGRVMAEPQPTRWQGLWLGQQLWGEAVDWWAKRPLPEGNCTLLASWSESPAALWQRLGATGRWLRLPLAQGWLAVALVQDRIEGLLLVGDRRPDIKVSLLASLLGTPLQAGALSQTLSAALAGESRLVCSCLRVSEGRIVDAITRQGVSELAGLQALLGCGSNCGTCLPEIDKLLIKHVFIASV
>LR134376.1|VEG95390.1|956218_956977_+|uroporphyrin-III-C-methyltransferase
MSHVSLVGAGPGPFELLTLRALQRLEAAEVVIYDRLVGSEILARIPKGAARFDVGKRCGEPSPSQDQINALLLALARTGKRVVRLKGGDPLVFGRGGEEALHLARHGIEAELVPGITAALGCAASSLIPLTHRGLARSLTLVTGHLMEEGDYQGWQGLARAGHTLVFYMGLERAAQIRQGLLAAGASPDLPVALVVAGCSPQQQVHETRLAMLAEAAVALLGQSPVLMIMGEVVGLRSELNALLTQALDRVA
>LR134376.1|VEG95391.1|957103_957688_+|response-regulator-NasT
MTTLPPGGPAGPPSRLLIHADEPGQANRLALLVSHYGHRPQILDSRQLLTPDGQGDALLISSRQFGAEVRLGLSLWPGVPRLLFCERLGAEPQIALLQQGVLLVPHPCGEREPVEQWLRLARSQLAMVQALAQTEAELRQKLEERRLVEQAKGRLMRHQGLDEEQAYRLMRSTAMSRHLSLGELARQLLLALPV
>LR134376.1|VEG95392.1|957976_959332_+|nitrate/sulfonate/bicarbonate-ABC-transporter-periplasmic-protein
MNKRQGCAALLLATLSLPVLALGAPEQEELKLGFIKLTDMAPLAVAYERGYFEDEGLYVTLEAQANWKILLDRVIDGELDGAQMLAGQPLAAHIGIGTQAELVTAFAMDLNGNAITVANSVWAAMAPQLPKAKAGQVPPPVSAAALKPVVAEYRQGGKPFNMGMVFPVSPHNYELRYWLAAGGLHPGFYAPKLGDNSGQRQADVLLSVTPPPQMPATLEAGTIAGYSVGEPWNQQAVARGIGVPVITDYEIWRNNPEKVFGVTRQWAERHPNTHVRLVKALLRAAWWLDAEQNGNRREAAKLLAKPEYVGADEQVIANSMVGTFEYAKGDRRSLPDFNVFFRHQATYPYYSDAIWYLTQMRRWGQIPQAKPDAWFEQVARAVYRPEVYRQAAEALIAEGKFKASDFPDFASEQGYRGPQDGFIDGLIYDGRHPNAYLQQFAIGLKGDERVQ
>LR134376.1|VEG95393.1|959346_960306_+|nitrate-transporter-component
MKRHKWQFINWKAVNWKTLVQPLLGVLLFLGLWQWGASQVQTSLGTLPGPLATASQLWSLGQEHLAQRDEAAAFLDRQQLRNAERLAQDPAAEVKLRPYTGRPTFFDQIATSLLTVLCGFGLASLIAIPCGLLLGMNQGLYRAANPVIQLLKPVSPLAWLPLITLVVSALYASPVPWLAKSFVTSALTVTLCSLWPTLINTAVGVAGLDRDLHNVSRVLRLSFWTHVRRIVLPGALPMIFTGLRLSLGVAWMVLIAAEMLAQNPGLGKFVWDEFQSGGSASLARIMVAVVTIGLIGCALDRGMLALQQWLSWDKRQALR

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Crispr_ID: LR134376_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_4

1524549-1524658

Orphan

Consensus_repeat	Method
GCCATCAGCTCAGGCCAACTATCTCGCCCTGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134376_4

>merge|LR134376|4|1524549-1524658|CRISPRCasFinder
GCCATCAGCTCAGGCCAACTATCTCGCCCTGCTCATCGATATCGATATGGCGGTGGTGGGGCAGGCTGCCAGGGTGGCCATCAGCTCAGGCCGACTATCTCGCCCTGCTC

>LR134376|4|4|1524549-1524658|CRISPRCasFinder
GCCATCAGCTCAGGCCAACTATCTCGCCCTGCTC	ATCGATATCGATATGGCGGTGGTGGGGCAGGCTGCCAGGGTG
GCCATCAGCTCAGGCCGACTATCTCGCCCTGCTC

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG95912.1\|1521805_1522465_+\|GTP-cyclohydrolase-I	unknown	unknown	gnl\|CDD\|236472
LR134376.1\|VEG95904.1\|1513985_1514714_+\|molybdate-ABC-transporter-periplasmic-molybdate-binding-protein	unknown	unknown	gnl\|CDD\|270257
LR134376.1\|VEG95922.1\|1533348_1535250_+\|arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
LR134376.1\|VEG95905.1\|1514823_1515504_+\|molybdate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226629
LR134376.1\|VEG95906.1\|1515500_1516556_+\|molybdate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|131197
LR134376.1\|VEG95916.1\|1526936_1527839_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
LR134376.1\|VEG95910.1\|1519616_1520372_-\|molybdopterin-synthase-sulfurylase-MoeB	unknown	unknown	gnl\|CDD\|180204
LR134376.1\|VEG95919.1\|1529431_1530553_+\|S-adenosyl-L-homocysteine-hydrolase	unknown	unknown	gnl\|CDD\|198065
LR134376.1\|VEG95911.1\|1520368_1521598_-\|molybdopterin-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|182643
LR134376.1\|VEG95913.1\|1522804_1524454_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
LR134376.1\|VEG95921.1\|1531069_1532293_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
LR134376.1\|VEG95920.1\|1530626_1530938_+\|selenoprotein-W-related	unknown	unknown	gnl\|CDD\|226057
LR134376.1\|VEG95909.1\|1518691_1519510_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG95907.1\|1516765_1517545_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|274729
LR134376.1\|VEG95915.1\|1526434_1526866_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG95908.1\|1517655_1518699_+\|StbA-protein	unknown	unknown	gnl\|CDD\|310773
LR134376.1\|VEG95924.1\|1536806_1537097_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG95917.1\|1527948_1528509_+\|small-protease	unknown	unknown	gnl\|CDD\|179642
LR134376.1\|VEG95918.1\|1528508_1529246_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG95923.1\|1535365_1536466_-\|O-antigen-chain-length-determinant-protein	unknown	unknown	gnl\|CDD\|182422

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG95912.1\|1521805_1522465_+\|GTP-cyclohydrolase-I	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	2.8041e-103
LR134376.1\|VEG95904.1\|1513985_1514714_+\|molybdate-ABC-transporter-periplasmic-molybdate-binding-protein	gnl\|CDD\|270257	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins that serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arranged around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate is where the central metal atom is in a hexacoordinate configuration. This octahedral geometry was rather unexpected. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.61124e-77
LR134376.1\|VEG95922.1\|1533348_1535250_+\|arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
LR134376.1\|VEG95905.1\|1514823_1515504_+\|molybdate-ABC-transporter-permease	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	7.09425e-74
LR134376.1\|VEG95906.1\|1515500_1516556_+\|molybdate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|131197	TIGR02142, Molybdenum_import_ATP-binding_protein_ModC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions].	1.56035e-92
LR134376.1\|VEG95916.1\|1526936_1527839_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.14811e-95
LR134376.1\|VEG95910.1\|1519616_1520372_-\|molybdopterin-synthase-sulfurylase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	1.50277e-151
LR134376.1\|VEG95917.1\|1527948_1528509_+\|small-protease	gnl\|CDD\|179642	PRK03757, PRK03757, YceI family protein.	7.37703e-82
LR134376.1\|VEG95913.1\|1522804_1524454_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.39981e-69
LR134376.1\|VEG95921.1\|1531069_1532293_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
LR134376.1\|VEG95920.1\|1530626_1530938_+\|selenoprotein-W-related	gnl\|CDD\|226057	COG3526, COG3526, Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones].	1.43411e-50
LR134376.1\|VEG95907.1\|1516765_1517545_+\|alpha/beta-hydrolase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	9.39209e-26
LR134376.1\|VEG95919.1\|1529431_1530553_+\|S-adenosyl-L-homocysteine-hydrolase	gnl\|CDD\|198065	smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain.	2.18622e-44
LR134376.1\|VEG95908.1\|1517655_1518699_+\|StbA-protein	gnl\|CDD\|310773	pfam06406, StbA, StbA protein. This family consists of several bacterial StbA plasmid stability proteins.	3.76672e-103
LR134376.1\|VEG95911.1\|1520368_1521598_-\|molybdopterin-biosynthesis-protein-A	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
LR134376.1\|VEG95923.1\|1535365_1536466_-\|O-antigen-chain-length-determinant-protein	gnl\|CDD\|182422	PRK10381, PRK10381, LPS O-antigen length regulator; Provisional.	7.52868e-70

>LR134376.1|VEG95913.1|1522804_1524454_+|methyl-accepting-chemotaxis-protein
MNTMTIGKKLTAGFAVLGLMMAFIGGFSLLEFSKMNRAAIGFTDSILPAVVRTSALGETINALRRYELDVFLVADDPQQKAHYRDASEQSLREVGQQIAVHDASIWATDVEERRSFDIVKAGWDKYVALHQRIRQMQDSGQMAEAQRLFMSEGINLYTTLSKSVADLIRINHGYSVNSRAEVVEAYDDAKLSVVITLLLGLGLVAVLSTVLTRQIRDPLVMLARQAQRIAGGELGRGELQEWIRNDRFKRDELGQLGSAIDRMQGSLAELVSEISGSVSQLSSAVEEVSAISEQSAKGMASQQGEVSQVATAMNEMQSTVLEVARNTTDAMSAAKAASHTSGEGHRVVGRAIGSIELVSQQIEQAGGVVQQLEQDSANISMVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQNSTAEISKMIEVLQGRTAEAGSAMQLSRQQMQSSVDLAREAGNSIDSINGAVTQISDMNTLIATATEEQNAVTEELNRSIVNIHNAADENALGAQQTAQACVELSKLATSLHHMTQRFTL
>LR134376.1|VEG95912.1|1521805_1522465_+|GTP-cyclohydrolase-I
MMTNLSQEALLVRAALEAQGLETPLVANELNGQQKKEKIEGHMRAIMETLGLDLRDDSLAETPHRIAKMYVNEIFSGLDYTTFPKVTVIENKMKVDEMIMVRDISLTSTCEHHFVTIDGLAHVAYIPRGKVIGLSKINRIVQFFARRPQVQERLTQQILLALQTLLGTRDVAISIKATHFCVKARGVMDSTSHTTTTSLGGVFKTQPDTRAEFLGGLKG
>LR134376.1|VEG95911.1|1520368_1521598_-|molybdopterin-biosynthesis-protein-A
MMGFDTGALLPLSDALQGMLDQLACCCDSEQLPLPEALDRILAEEIVSPLSVPPFDNSAMDGYAVRLADLAAGAPLAVAGKAFAGQPYQGDWPAGHCIRIMTGAPVPEGTEAVVMQEEAQVEGELVRFLTQPRPGQNIRRRGEDLAEGARVLAVGLRLSPRELPLLASLGIASVRVRRPLKVAIFSTGDELKPVGTPLAHGDIYDSNRYGVKAMLARLGCECLDLGIIPDDPAQLRAAFLQADREADALITTGGVSVGEADFTKQLLEELGEIGFWKLAIKPGKPFAFGRLPNAWFFGLPGNPVSAMVTFDQLVKPALARLAGQTLAAPLRLAATVTEPLKKSPGRLDFQRGILTQGPNGLEVRSTGSQDSGVFSSLSRANCYIVLEQARGKVAAGETVTVESFSGLLL
>LR134376.1|VEG95910.1|1519616_1520372_-|molybdopterin-synthase-sulfurylase-MoeB
MSEILSDAELLRYNRQIVLKAFDFEGQEALKQAKVLVIGAGGLGCAAAQYLGVAGVGQLTLVDFDRVELSNLQRQVLHHDGRIGQYKVDSAAETLRTLNPWLRVETHAVLADEALLDALLPSHQLVLDCTDNVAIRNLLNQRARQHGVPLVSGAAIRLEGQIVSFSWQAGEPCYACLSSLFGEQSLTCVEAGVLAPMVGLVGSLQALETIKLLAGTGRSYSGRLLMIDGLSGTFREMKLPKRPDCPVCSGH
>LR134376.1|VEG95909.1|1518691_1519510_+|Uncharacterised-protein
MSSQLKRMTFSIYMDPGALESDRYAVGVLQNWYQRARKIQDGAEEFDFSKSRFHKDIYLSGMFMYVLAPNLCKVIANALGPEQVSLTTLRHAFASCGFSLGEEATSPGATDTMIDQIVARLAPQWGQGDNAALVDEIIHRLGQQSPTSTQDNLVDEIVSRLGEQQPTELWDELRQGLPGVLDHDQLAEAIAGKLPTAAAEQDLAPLQSSIQLLSRQLEEQSRLIREQHRLIQRLASQPGRSVGPDESTSEPLVEDLSRQVANMKKVKAKGIF
>LR134376.1|VEG95908.1|1517655_1518699_+|StbA-protein
MSEVMKMAIDDGSTNVKVSWIENKVLKTIISPNSFRKDWKSAALRKDKKIYNYEIGNTKYTYDATSDKSLATTHVEYQYDDLNLLSVHHALLQTGVTPGDVAITVTLPITEFYNPDDCQRNEEKIEKKRRNLMRAISLNKGELFNIVSVEVMPESLPAALSRLIGSGCNEFTKTLVIDCGGTTLDMGIIVGEFDDVSDVYGNNEIGVSMVTDATRKALAAADSDSSYLVANEFIKRRHDMSFVRDVVNDESQIPKILEKMQNKIDELGTQVAHEAKKFAKNPNRVYLVGGGASLIHEAIKSAYPTLGERVELLDDAQSALAREICLYTTEEDEVYREAAVMAEVADE
>LR134376.1|VEG95907.1|1516765_1517545_+|alpha/beta-hydrolase
MRRNQVMKSHGLALRSAGEGPLLLLLHGLGSSSLDWQAQLEHFSQHYRVVALDLRGHGQSMQEGPFDVPTLAADVARWLDEQPEPAWVVGLSLGAMVALELALQLPNKIRGLVLVNGFSEFLLESPKERERYAQRLKWLRWFGLRPLAWWLARELFPGPELAQLRQTFRLRFVRSNKKKVYRALLAALPGWSARARLGTLWQPVAIISTTQDYLPLAKRVEQFASLPNASIHTPPGHHAWPAEDPAGFNHLLHRILETH
>LR134376.1|VEG95906.1|1515500_1516556_+|molybdate-ABC-transporter-ATP-binding-protein
MSLHLKARRRFGGFELDCELALPLGGMLGLFGPSGCGKSTLLRIIAGLDRQPQDRLRWQGRELGSLLPERRRIGLVFQDSRLFPHMTVLANLQLAARKGRGRWQPEALAERLGFAELLPQPAHGLSGGQRQRVALGRALLAEPDLLLLDEPFSALDRRSRIHQAHVLRGLQRESGLPMIFVSHAMEEVSLLCDQLVLLAEGRVEAQGRPGDIFARTDLSLASRDDAGVMLSATLAHYDDASQMASLRLGEQTLMVTMDHAPDETGPLQIKVAGRDVVIATAPIAHSSLSNCLETRLLEIREVRPGQTLLQLALGQQILLARITSRSAERLALVPGQLLYAYIKAVSLVGEG
>LR134376.1|VEG95905.1|1514823_1515504_+|molybdate-ABC-transporter-permease
MSEGDLLAVWLTLKLAGSTTGILLLLSPPLAWWLSRSQHRLRPLVEALVALPLVLPPTVLGFYLLLAFSPSYGFGAWWKETFGAPLAFSFLGLLFASILYSLPFVVQPLTSAFVNMGSKELEAAATLGLGPLERFFHIILPMTLPSFVMAAALGFAHTLGEFGVVLMIGGNIPGETQVLSIALFDHVEAMDYQNAHTLAGGLMGFSLVMLVLVYGVLQRRQRRLFG
>LR134376.1|VEG95904.1|1513985_1514714_+|molybdate-ABC-transporter-periplasmic-molybdate-binding-protein
MKQLLSVLLVGACACALHSGAVQADEVTVAVAANFKGTIERIGKEFTAKTGHSVVISSAATGVLYTQISHGAPFDLFLSADVSTPEKLEKEGKGSERFTYAIGQLGLWKKGGPAPDEATLRGWKGNLAIANPRTAPYGAAAMATLEQLKIDPKQYRLLTGANIGQTWQFVDTGNAELGFVAWANLVEAGKTGEAWAVPNQLYPAIEQQGLVLKKGEAVDALVAWLKGPGQSTIKDAGYALPQ
>LR134376.1|VEG95915.1|1526434_1526866_+|Uncharacterised-protein
MSNNILSGSRELHLTPILLDLNALYHPPKRPLTALGIVSSFIPLFGYGWQAMTQDPETHFRHEIGKRINKHKTDEANLILILQLAATLDCYCLHISLPYVPSDEQLATLHRRLPRWQLTLSGQLLVAELPVPATDPQAPGTQP
>LR134376.1|VEG95916.1|1526936_1527839_-|LysR-family-transcriptional-regulator
MDQIAAMRTFIKVVECQSFTKAAHQLGISVAMTSKLMQQLEESLSTRLLSRTTRQVNPTEAGQFYYQRSQALLAELEETHSQLTRNNQQPQGTLKLSVPMDFGYLHLSPALPLFRERFPDLKLEIEYSDRRVALVEEGFDLALRIGNLPDSSLVAKPLAMMRLEVCASPAYLARRGTPSQPEDLKQHDCLIYTLTQPDWVFKRKGEQLSVRPQGPLRANNGVALTRAACDHQGIILQPTFIVGDALRSGELVSLLPEWDKGQVGLYALYPHRRFVSAKVRCFIEFVQERYLAPHYWDREA
>LR134376.1|VEG95917.1|1527948_1528509_+|small-protease
MKMTKALLASCLFMAAPLMAADYDVDAAHTTVQFKVGHLGFSELVGRFNTFSGTFSMDEANPAAAKASFEIDAASVDSNHEPRDKHLRSPDFLDVKQYPKMTFVSSGYEGSKDKGVLKGSLTLHGVTKEVAFDMVHIGEGKDPWGGYRSGFNATTTIKRSDFGVSYMLPGIPDEMSINLFVEGVRK
>LR134376.1|VEG95918.1|1528508_1529246_+|Uncharacterised-protein
MGAALLLQTLAAPLGAALLSWRWPRLGYLWGALALWLVGSLLGGAYGLPAKAWQWLPLCLLVPAIVAQLVDKRAALALFAVLAALVWWQGLASVLGTEPRIWLALLPAIAWFAWTGWRGDSREGLGFALGFIWLALVIGIDGSLLIAQLAGALAAFAGLRALLAALTGVQASPGALALALAFVQMLAWQYVEVPLLVLLPVWLLPLLEWALGKQPWLTRWGLLILVAGIGAGLSLWWVWPEASLY
>LR134376.1|VEG95919.1|1529431_1530553_+|S-adenosyl-L-homocysteine-hydrolase
MRSQGSEHLFFRHFTEQGRLEGLCILLVTHLLPDRPHFIQTLDQIGRIGAILPKPKSVHGPTLIWAQQHYPVLPLNRHWTNDPEGVIEQIAPLVRAHERLIILDIGGYFARTQAILSEHFGARFLGVVEMTENGHQRYELEALAAPVISVARSPLKQAEDIQIGLSVVYSAESLARTLNRTFNVCQAALFGYGKVGRSIARELRCRNLHLELVETDALRQVEALSHGFKLVGKAEALKRAELVICSTGNGSLDLDDLQALRPGAMLASVTSADDEFAFYLSLLPWPSEEVCPHVLALTRPDGSIIFLLNHGEAINFVHGAVIGEYVYLVLAEIIEGVRQLARQETLPGLFDLPQTTMSTIARHWLADFHGVVQ
>LR134376.1|VEG95920.1|1530626_1530938_+|selenoprotein-W-related
MTEMAQPSLKPRIEIRYCTLCRWMLRAAWLAQELLSTFDSDLGEVALVPASKGEFKILVNGVQVWDRVADEGFPEAKEIKQRVRDLIAPERDLGHADRKPAGE
>LR134376.1|VEG95921.1|1531069_1532293_-|peptidase-T
MDTLLERFLRYLTFHTRSDACNPACPSTEGQLIFARALRDEMTQLGLSQVTLDDNGYLTACLPGNQPDAPAIGLIAHMDTADYEAEQVVPQIIENYQGGDICLGKGDEVLAIRQYRCLKNYLGQDLITTDGTTLLGADDKAGIAEILSAVAQLQTNPEIPRGDLWLGFTPDEEIGRGANLFPLDRFPARWAYTVDGGELGELEYENFNAASATVRFIGNNVHPGTAKGGMINSQTLAARFHAAMPPEQTPECTEGYEGFFHLAQMRGTVEETELHYIIRDFDDDAFAARKAQLKERVASLQLDAPKARIELTLTDSYRNMRSQIEPHMHIVELAKAAMLAADVTPKIKPIRGGTDGARLSFMGLPCPNLFTGGHNFHGKHEFIPLQSMEKAVATLVELVRLTAAYRD
>LR134376.1|VEG95922.1|1533348_1535250_+|arginine-decarboxylase
MTNWSSKDSLKVYNVPYWGAGFFNINDAGHVTVAPDKSRPDAHIVISDAIEQLRQSGLTTPVLLRFPDILKSRVDALFNAFGQAIEKSGYEGDYLCVYPIKVNQQRRVIETISQSYSDKPRLGLEAGSKPELLAVLSHHHEQGSVIVCNGYKDREYIRHALLGNLMGHKVYIVVEKPSELEMVLDESARLNIKPNIGVRAKLASTGSGMWESSGGSMSKFGLSASQILALVERLRSLGKLDCLQLLHFHLGSQIANIRDIQGGIRECGRFYSELRRLGVPIDVVDVGGGLGVDYEGTRSQSHCSANYSLSEYANNVVWGIGDVCREFDLPHPTIISESGRALTAHHAVLVTNLIGAEGVEMSDISAPDEDAPTILQNMWKGWLDLRSEDPSLLEIFHDSVADLGDVNTQYTMGLLNLEQRAWAEMLHQNTCLALKELLNPVNRNHRALADELSEKLADKCFANFSLFQSLPDAWGIGQVFPVMPLTGLERPLTRRGILMDITCDSDGQVEHYVDGLGVESTLPMPEYAENEVCHVGFFLVGAYQEILGDLHNLFGDTHCAEVWLDEEGKMDIRNVVRGDTVDQLLRYVNIDPSVIRENYQRIVSHPALDDATRKALLDELELGLQGYAYLEDE
>LR134376.1|VEG95923.1|1535365_1536466_-|O-antigen-chain-length-determinant-protein
MSNKNNNAINYSINSKPLNDEIDLVELTILLWKKKYRILLVTFICGCIGLLYAVVAPEQWTANATIYQPKQRDTLELDRLRAALEIQGLAGAKNNNSIYNDFLLEFKSYDNISDFLQNTSQFKEYIVENKLDSLAQQRLLRTWSEWMTIEPADKKGEQPGIHLSFSFFKKEDALSLLTGYINYIILLQSEELLDILENNKNSQLSTLKLRIKMRTEDAQRNLAGEIENIDYSMSIANAAGVNKPLENFSYGDRFPITLGKDGLAKKLAILKSLKPEEYMPEIMELNVQLNRLKDINLNKLEFRPFSYLDTPSQPLTRDKPKRPLIVVLATMLGGMMGVALVLLKHAFRQDRNKDEYDYRPRLANVG
>LR134376.1|VEG95924.1|1536806_1537097_-|Uncharacterised-protein
MAKYQFLTIPASNRQSYTYLDADSPTFTLERNALLAQGFEVEDDFIYANTPAEAVEKYRSNFTYVAEEYAQSNAIYAVFSLLVVIGKSLLGRKRRH

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Crispr_ID: LR134376_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_5

1991356-1991468

Orphan

Consensus_repeat	Method
TGCTGAAATAAGCGGCTGGATCAGCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134376_5

>merge|LR134376|5|1991356-1991468|CRISPRCasFinder
TGCTGAAATAAGCGGCTGGATCAGCGCTATAGACGAGGTGGTCTGCATGGCAAGGTGTTCATCATGGTGGCACGCACTGGCCAGTTGCTGAAATAAGCGCCTGGATCAGCGCT

>LR134376|5|5|1991356-1991468|CRISPRCasFinder
TGCTGAAATAAGCGGCTGGATCAGCGCT	ATAGACGAGGTGGTCTGCATGGCAAGGTGTTCATCATGGTGGCACGCACTGGCCAGT
TGCTGAAATAAGCGCCTGGATCAGCGCT

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG96314.1\|1995222_1995711_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|182172
LR134376.1\|VEG96320.1\|2001198_2001969_-\|periplasmic-protein-TonB	unknown	unknown	gnl\|CDD\|367555
LR134376.1\|VEG96316.1\|1997445_1998807_-\|exodeoxyribonuclease-7-large-subunit	unknown	unknown	gnl\|CDD\|234714
LR134376.1\|VEG96302.1\|1983037_1984633_-\|peptide-ABC-transporter-periplasmic-peptide-binding-protein-SapA	unknown	unknown	gnl\|CDD\|173858
LR134376.1\|VEG96300.1\|1980955_1981849_-\|peptide-ABC-transporter-permease-SapC	unknown	unknown	gnl\|CDD\|226640
LR134376.1\|VEG96304.1\|1986036_1986717_+\|phage-shock-protein-A	unknown	unknown	gnl\|CDD\|274372
LR134376.1\|VEG96319.1\|2000443_2001196_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
LR134376.1\|VEG96311.1\|1991670_1993218_+\|transcriptional-regulatory-protein-TyrR	unknown	unknown	gnl\|CDD\|236769
LR134376.1\|VEG96303.1\|1984800_1985841_-\|PSP-operon-transcriptional-activator	unknown	unknown	gnl\|CDD\|274371
LR134376.1\|VEG96308.1\|1988987_1990028_+\|Domain-of-uncharacterised-function-(DUF697)	unknown	unknown	gnl\|CDD\|235449
LR134376.1\|VEG96306.1\|1987051_1987453_+\|phage-shock-protein-C	unknown	unknown	gnl\|CDD\|132023
LR134376.1\|VEG96315.1\|1996036_1997383_+\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236368
LR134376.1\|VEG96312.1\|1993401_1993944_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379335
LR134376.1\|VEG96305.1\|1986720_1986957_+\|phage-shock-protein-B	unknown	unknown	gnl\|CDD\|236526
LR134376.1\|VEG96317.1\|1998934_1999849_-\|transporter	unknown	unknown	gnl\|CDD\|273359
LR134376.1\|VEG96309.1\|1990183_1990978_+\|phenylalanine-4-monooxygenase	unknown	unknown	gnl\|CDD\|237020
LR134376.1\|VEG96307.1\|1987520_1988927_+\|amino-acid-regulated-cytosolic-protein	unknown	unknown	gnl\|CDD\|367902
LR134376.1\|VEG96301.1\|1981998_1982958_-\|peptide-ABC-transporter-permease-SapB	unknown	unknown	gnl\|CDD\|185065
LR134376.1\|VEG96318.1\|2000021_2000444_-\|biopolymer-transport-exbD1-protein	unknown	unknown	gnl\|CDD\|223917
LR134376.1\|VEG96313.1\|1993940_1995185_+\|inner-membrane-protein-YfiN	unknown	unknown	gnl\|CDD\|182171

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG96314.1\|1995222_1995711_+\|OmpA-family-protein	gnl\|CDD\|182172	PRK09967, PRK09967, OmpA family protein.	7.40955e-39
LR134376.1\|VEG96320.1\|2001198_2001969_-\|periplasmic-protein-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	3.42577e-21
LR134376.1\|VEG96316.1\|1997445_1998807_-\|exodeoxyribonuclease-7-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
LR134376.1\|VEG96302.1\|1983037_1984633_-\|peptide-ABC-transporter-periplasmic-peptide-binding-protein-SapA	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
LR134376.1\|VEG96300.1\|1980955_1981849_-\|peptide-ABC-transporter-permease-SapC	gnl\|CDD\|226640	COG4171, SapC, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	6.77852e-122
LR134376.1\|VEG96304.1\|1986036_1986717_+\|phage-shock-protein-A	gnl\|CDD\|274372	TIGR02977, phage_shock_protein_A, phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	7.8099e-87
LR134376.1\|VEG96319.1\|2000443_2001196_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	7.52488e-41
LR134376.1\|VEG96311.1\|1991670_1993218_+\|transcriptional-regulatory-protein-TyrR	gnl\|CDD\|236769	PRK10820, PRK10820, transcriptional regulator TyrR.	0
LR134376.1\|VEG96303.1\|1984800_1985841_-\|PSP-operon-transcriptional-activator	gnl\|CDD\|274371	TIGR02974, psp_operon_transcriptional_activator, psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions].	0
LR134376.1\|VEG96308.1\|1988987_1990028_+\|Domain-of-uncharacterised-function-(DUF697)	gnl\|CDD\|235449	PRK05415, PRK05415, hypothetical protein; Provisional.	6.50843e-116
LR134376.1\|VEG96306.1\|1987051_1987453_+\|phage-shock-protein-C	gnl\|CDD\|132023	TIGR02978, Phage_shock_protein_C., phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	3.65013e-56
LR134376.1\|VEG96315.1\|1996036_1997383_+\|coproporphyrinogen-III-oxidase	gnl\|CDD\|236368	PRK09058, PRK09058, heme anaerobic degradation radical SAM methyltransferase ChuW/HutW.	0
LR134376.1\|VEG96312.1\|1993401_1993944_+\|Uncharacterised-protein	gnl\|CDD\|379335	pfam13689, DUF4154, Domain of unknown function (DUF4154). This family of proteins is found in bacteria. Proteins in this family are typically between 172 and 207 amino acids in length. Many members are annotated as valyl-tRNA synthetase but this could not be confirmed.	1.1066e-39
LR134376.1\|VEG96305.1\|1986720_1986957_+\|phage-shock-protein-B	gnl\|CDD\|236526	PRK09458, pspB, envelope stress response membrane protein PspB.	1.29143e-37
LR134376.1\|VEG96317.1\|1998934_1999849_-\|transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.52147e-18
LR134376.1\|VEG96309.1\|1990183_1990978_+\|phenylalanine-4-monooxygenase	gnl\|CDD\|237020	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.	1.48799e-150
LR134376.1\|VEG96307.1\|1987520_1988927_+\|amino-acid-regulated-cytosolic-protein	gnl\|CDD\|367902	pfam04317, DUF463, YcjX-like family, DUF463. These proteins possess a P-loop motif.	0
LR134376.1\|VEG96301.1\|1981998_1982958_-\|peptide-ABC-transporter-permease-SapB	gnl\|CDD\|185065	PRK15110, PRK15110, peptide ABC transporter permease SapB.	1.29658e-112
LR134376.1\|VEG96318.1\|2000021_2000444_-\|biopolymer-transport-exbD1-protein	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	9.45676e-43
LR134376.1\|VEG96313.1\|1993940_1995185_+\|inner-membrane-protein-YfiN	gnl\|CDD\|182171	PRK09966, PRK09966, diguanylate cyclase DgcN.	1.57016e-82

>LR134376.1|VEG96309.1|1990183_1990978_+|phenylalanine-4-monooxygenase
MASLYTAHQPDEQGLIHYTDEEHGTWQILIDRQLAALKGKACDEYLAGLARLDLPRDRIPQLMEINAVLTPGTGWSVVAVPALISFDRFFSLLAQRQFPVATFIRRRDELDYLQEPDIFHELFGHCAMLTNPAFAHFTHVYGQLGLKASKEDRVYLARLYWFTVEFGLVQSPASLRIYGGGILSSIGETAYALSGQPSLQPFDAVEVLRTPYRINIMQPTYFVLPSLDALYQLAEQDIMACVAQARRLGLRAPRFAPAPGKQAS
>LR134376.1|VEG96308.1|1988987_1990028_+|Domain-of-uncharacterised-function-(DUF697)
MNDQTKVRTPDEGVPLQGKVLLEPAFSAAATEQAPAPAQLLEEESFERLDELNDFVEPALTLRPRRRHRLLGWGLGAVGVLSLGQFGGFLYDQFVASPLWGGAWLLASGLVVVGTAGVAGREWLRLRTLKRRQDVRSRAEDLLAHQGVGQGQAFCEALAEKSGDKGREGYQNWLGQLDESHSDREVLTLYSQLVLTERDKLAQARVAKWSGEAAVLVALSPLATVDMMLMLWRNLRMIEDIADVYAIELGYWSRISLIRQVFRNMLYAGATELVTEVGMDLLGAELTAKLSARAAQGVGAGLLTARLGLRTIEACRPLPWCGDEKPKLGELRKRLIGQLAGYLNKS
>LR134376.1|VEG96307.1|1987520_1988927_+|amino-acid-regulated-cytosolic-protein
MIRNKLEQKWSVLQHKAFEAVNRVRDRHIRLAVTGLSRSGKTAFITALVNQLEHAAIDGRLPLWDAQRQGRILGARRVPQLNAHIPTFAYERGLDSLFGEPPAWPEPTRGVAEVRLEIRYRTRHPLRKHLGEISTLYVDLVDYPGEWLLDLPLLELSYEQWSEQVANQLRRPELQALASSWLEPRWQAEQAFEERPACELAARYTSYLHACKRELGLHLIQPGRFVLPGEYAGAPLLQFVPWVWDKPASEPADGSLYATFKQRFEQYKQHLVQGFYEQHFAGFDRQIVLVDCLQPLNAGAASFGDMQQAIARIMESFAYGKSNWWRRLFAPRIDKLLFVASKADHVTPEQHAPLVSLLQHLVSSGRGQARFEGIETECLALAAIKATEVGKGLANGREFPAIRGTSLAGEPLLLFPGEVPSHIPPAQWWHNQGFDFQAFRPLAMSPHQALPHIRLDAALEFLLGDHLE
>LR134376.1|VEG96306.1|1987051_1987453_+|phage-shock-protein-C
MSASNNSRNLYRDPQKGKIAGVCAGLADYFGVETWIVRLLAITGLIFAGFITFTAYIAAWFLLDKKPVTLYGEQEADFAEVRMKARSWQAGVTPHQALGRIALELDTLEPRLQRIEKLVTSKEFTLQREFSKL
>LR134376.1|VEG96305.1|1986720_1986957_+|phage-shock-protein-B
MEDILGILATPLIVFMVIVAPIWLVLHYRAKGRIGAGLADNEREELQGLLVRAEKMQERVGALESILDAEVPGWRNKV
>LR134376.1|VEG96304.1|1986036_1986717_+|phage-shock-protein-A
MSIFSRLADIINSNLTALLDKAEDPQKMVRLIIQEMEDELVKERSNLARFLANQKEIGRQVHRHQERVNEWQGKAELALAKGRDDLARAALIEKKKQTELAETLYREQQAVDSGIDKLGDEIRQLEAKLEDARARQKAMAIRSEAASSRLNVQSQVARGDSQAVVSKFERMERRIDEMEARADLGQSDKALAQQFAELEVDDQISRELEAMRQKLGQGDTASKQGE
>LR134376.1|VEG96303.1|1984800_1985841_-|PSP-operon-transcriptional-activator
MTTDTESLLGESNAFLEIIEQTSRLAPLRKPVLIIGERGTGKELIAHRLHYLSGRWDQSFVTINCATLSESLLETELFGHEAGSFTGAAKRHQGRFERADGGTLFLDELATTSARVQEKLLRVIEYGEFERVGGAKPLKVDVRLVCATNEDLPRLAERGQFRHDLLDRLAFDVITLPPLRERRDDILMLAEHFAHSMTRELGYPLFAGFSRKATQLLLDYPWPGNVRELKNVVERSLYRQGNPQLPLAELVLNPFDSPWRPRANGLAPSPVEAAPDGQQAHNLPLDLKGAVAEYEINLLKQAMQQSQYNQRKAAQLLALSYHQFRGMLRKYQLLEGDDSNGNADID
>LR134376.1|VEG96302.1|1983037_1984633_-|peptide-ABC-transporter-periplasmic-peptide-binding-protein-SapA
MLKPLLLGLLVLVTGCQKQTEASKTGLVYCVEGAPQTFNPQLANSGVTLDASARPLYDRLLEVNANTLSIEGGLATHWHSSDDGLSYTLNLRKGVTFHRTPWFSPSRQFNADDVLFTYQRLLDEHHPFHTISGGEYPYFYSLGLASLIKRVYKQGPYEVVFELNRPDASFLATLASDYAVVLSAEYGEQMIKAGTPALLDNRPIGTGPFSFKEYRHNEFIRYLRHPGYWGGEAKIEQLIYDITPKSSKRLAKLLTGECDVMSTPSASQLSVIDKDPDLNLSIQSGMNVAFLALNTRKAPFNKVQVRQALASAINVQNLLHAVYFETGQPATSLLPPLSWGYNPSLQLRQPDLKLARQLLKEAGLPHGFEMQVLVQPGARPYNPDGLKTAQLMRSDLAKIGVKLKIVQQAWPVIETRLAKGQYDSLLSGWIADNADPDNFFRQLLSCAAVERGNNYSRWCSPAFDQLLDDAVTTPQLAFRLRNYYYAQTLLNEQLPLIPLAHALRTQVSRSDIQGLTLMPFGGTTFNQAYRE
>LR134376.1|VEG96301.1|1981998_1982958_-|peptide-ABC-transporter-permease-SapB
MFFYILRRISLLLITLLVLTLGAYLLESRLIGQVLDFGHGYPDFLRRIFAGDLGLSSVSGLPVLEEIRHYFPATLTLCITAFAISLLLGIPLGTLAALYQGRSLDLSIMTAGLIGYAVPVFWLALLMVMFFSLDLGWLPASGQISLLYDVPSITGIAIIDVLLSQEPWREAALHDALRHLVLPSLVLAVVPTTEVIRHVRSSLIDVLKQNYIKAAASRGLSRRQIVWRHGLKNALPPVLPLLGLQLGSVLTSAMITEVVFDWPGIGRWLVNSIALQDYAAIRGATLVVASFVIFISVSTELLTTIMYPARRKELYAKQD
>LR134376.1|VEG96300.1|1980955_1981849_-|peptide-ABC-transporter-permease-SapC
MQDKSNIYPELKILSPLEQTWASYRRNPLAMGGLWCFGLLLLITLVGPLVVPYGIDDQHSSRLLLAPSWASTGNIDYFLGTDDLGRDILSRLVVGARLTFGNALLVVVIALIVGSAIGILGGMSKGVKSSVLHHLLDTLLSIPSLLLAIIVVAILGPGLFNTLIAITLALIPPFIRATYNAVHTEMQKEYIIASRLDGSPPWRIMRLAVLPNIVETLVAQTTRTLSAAILDISAVGFLGLGAQSPQPEWGAMLADSSDLIYLAPWTVTLPGMAILFSVLVTNLVGEGIREALKEGND
>LR134376.1|VEG96311.1|1991670_1993218_+|transcriptional-regulatory-protein-TyrR
MRLEVSCEDRLGLTRELLDRLVEHNIDLRGIEIDTTGIIYLNFPELEFRDFQHLMPEIRRIPGVYDVKTIPYMPSEREHHEIEALLKALPDLVFSLDSKGRITQANQSALTTLALPQEEVRGLALGSLVKGFSFARWLEASEIKPQTCKLSLGGEEYLGDLMPLFVAEEKGRQALAGAVVVLKSARRVGMHFSALHAVEVGGFEHLQAESQKMKEVLAQAAKLAMQDAPLLILGETGTGKELLARACHGASLRSSHPFMALNCAAMPDNVAESELFGYAPGAFGNNTEGKRGVLELASGGTLMLDEIGDMSPHLQTKFLRVLQDGVFRRVGDEQEVRVNVRFICTTQKQLLDLVHEGKFREDLYYRLNVLSLGLPPLRERKADIMALAQQFVSRFASELQRPRPRFTRNMAEYLTAYRWPGNVRQLRNCLYRAMTLLEGDEIGPEHVDLPVAADAMPLIDEWFEGGLDEAVKRFESRLLERLYPAFPSTRQLAKRLGVSHTAIANKLREYGIGKK
>LR134376.1|VEG96312.1|1993401_1993944_+|Uncharacterised-protein
MQSHSLIRAMAWLALLFCSLALASVSETSAEVRAELVRQTVLDILSYTRWPTEPAELRLCIAAPTEYAGALPSIKQQANGRPVDVHRYDLDDEALSQRCDVLYLGVMTSEQRVALFQRLRGHAILSIGEQSHECIADAVFCLQASQERVRFKVNLDALARSGVRVHPAVLKLARADEDAR
>LR134376.1|VEG96313.1|1993940_1995185_+|inner-membrane-protein-YfiN
MKNQIPSEQRITLRQSLGRTHMMTSLTAVCMAGLFLTITALLALRLYADHNLELVARAISYTTEAAVVFHDEEAAKETLQAIASHEDVASARIQLADGQVLASWTRAITTPWSSLEQQLAHLILPGPVELPVLREGKEIARIHLVGHGQYLLRFLLQTLMATLLCLLLSILGALYVAHRMQYSITDPLKALAQVAHSVRRQRALKQRVPAADIAELHELGEDFNSLLDELEAWQLHQKRENASLLHQATHDPLTGLPNRALFEARLDQSIMTGRAQHERFALLYLDCDRFKQINDSLGHAAGDEVLVTLARRIQHQLRPMDLVCRLGGDEFAVLLAPLQHEREVRDVMIRIQQAMIVPVVLGDGRHLVAKVSVGYAMFPEQGLTADELLQHADSAMYQAKRQRREEVTDHKLSI
>LR134376.1|VEG96314.1|1995222_1995711_+|OmpA-family-protein
MKIFNLMKVGLFGLSLSALAACQSAPQGLTAEQVTVLKEQGFHLTDEGWTLDISNKVLFANNVGALNPNTRQVVEKLGKALLDVGLNRVRVDGHTDSNGEAAYNEQLSRKRAQSVADVLASVGMPAANLDIRGRGEQAPVADNGTAAGRAENRRVAIIIGNG
>LR134376.1|VEG96315.1|1996036_1997383_+|coproporphyrinogen-III-oxidase
MTGLSTPDPLKFAFTAKTSAHASRGGIRPLSLDDAAWQGWWQQPSQAQERALYIHIPFCRKRCSFCNFFENGANPARMSRYMAALCDSLQRAAESRLGQSRPFSAVYVGGGTPTDMAAEDLARLATAIRRFPLSEDAELTLEGRLNGFDDEKWQTALAGGFNRFSFGVQSFNTEVRQQAARFDDRETLLDRLAELTRDDAAVIVADLIFGLPGQDDAVWRQDIADVMASGVHGVDLYQLIAMAGTNLERAQEKGRLGWSADGQQRAGMYAYGAQTLEQGGWQRLSSSHWRRGEREQSRYNQMAKRGAEILPFGAGAGGNVQGHGLMYGRDLALWHEALASGVRAPGMVMGRNPNAHIDGLLRGALDTGWLALTRLPPSLRTHLLPLFQAWQRHGLAELMEERLELTLAGRFWNVNLQAGLFEFLQLNPLDGGAASGAHPAEAVRHSLV
>LR134376.1|VEG96316.1|1997445_1998807_-|exodeoxyribonuclease-7-large-subunit
MNHLDDRQQKQQQIFTVTRLNSAVRMILEQDLGLVWLTGELSNLAMPSSGHWYFSLKDISAQVRCAMFKGNNRRVPFRPQDGMQVLVQARVSLYEPRGDYQLIIESMQPAGDGMLALRFEELKRRLGAEGLFDEGRKRPLPREPRAVGLVTSATGAALHDMLTVLERRAPDLPVFIYPTQVQGSAAIGQIVAAIHLANRRAEVDVLIVGRGGGSLEDLWCFNEEAVARAIAGSTIPVISAVGHEVDVTISDFAADLRAPTPSAAAELVAPDQGARAQRLTHLGQRLTQAISRHQTAARHGFALLQKRLDHQDPKRRLEQQSQRLDELSSRLQQLLNQRLHQGERRLANLELRLQARSPEKLLAAGKRRHQLAEERLFALMAKRQSLADHRLAMLSARLDGVSPLATLGRGYSITRTQGGEVISRAAQVSAGQSLVTTLAEGHLRVRVEEVHNP
>LR134376.1|VEG96317.1|1998934_1999849_-|transporter
MRTSDYVRLLVLAAIWGASFLFMRIAAPAFGSVNTTFLRVLFALIGLAVMLLLLRTPMRFKGKLRSAMLLGIINSGVPFLMYAIAALWLPAGYSAILNATTPLMGAMIGFSFFDEKLSPRKWFGVMLGLVGIALITTTGEVHLSGNVIIGVLACLFATACYGCAGFLTRRWITEQGGLDAKLVAFGSQLGACVFLLPFFGYTMTAGPAVNWAIPEVWASILAVGFVCTALAYLLYFRLIADIGPLRSLTVTFLIPPFGIFWGYLVLGETLTEGFIIGGVIVCLSVWLVVSPARSQPRVNPEVER
>LR134376.1|VEG96318.1|2000021_2000444_-|biopolymer-transport-exbD1-protein
MAFGKLSSDSDDQPLSEINMIPMIDVMLVLLIVFMITAPLLTNAVKLDLPEASSQANQPKQDDISLSIDGAGKMYWNDKPVDEAALIAQMSAVDQKAQELPEIQLRIDKSVEYGTIARVMALASQHGLHKIAFVSQPEAE
>LR134376.1|VEG96319.1|2000443_2001196_-|MotA/TolQ/ExbB-proton-channel-family-protein
MNPEIETNGMGIAHLLSQNTGVGLIPLILLVLMSLATCYYALLKLWLGYREQRLNAQFVGQFWQHASVQEMERQLAQTPPQEGYGRVTRAALAAVAQLDRAQERAVSLKLGSPDDFLLRALRQAITLERIRLEQGLTLLASVGSAAPFIGLFGTVWGIYHALLAIGSAGQSSLDKVAGPVGEALIMTGFGLAVALPAVLIYNFFVRRNRLKLAALDEFAYDLFALLVTGFEQASPKVTQLAEREARKGRG
>LR134376.1|VEG96320.1|2001198_2001969_-|periplasmic-protein-TonB
MSACAMRPAIGRDKMAFGPVQLTCLAIAALLHLAILWLMQGSHSAPIQPPEPLTLSARWAGESNKDDAPGKPAAPAPTPAQPKVVKQPAPVQHKPVKPIVKKTAPKPVPKAPPKPAPLVKPVTKAQPVTTPAAPAAPLNTANHQSGSSSAPAKTNQTGSGGGSSAPIARDASLNNPEPPYPHESRRRGEEGRVVLKVRVSKEGTAESVEVENSSGYRRLDMVARKTVSRWRFIPARQNNAAVAAWTGVTIIFKLGT

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Crispr_ID: LR134376_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_6

2478251-2478373

Orphan

Consensus_repeat	Method
CAACAGGCGAATCGAGATGAGCACGCCGATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134376_6

>merge|LR134376|6|2478251-2478373|CRISPRCasFinder
CAACAGGCGAATCGAGATGAGCACGCCGATTTACCGCTGCGAGCATCCCATTCATCTGCTGGCGCAGGCGTTGGTATGAGGGCTGGCATGACAACAGGCGAATCAAGATGAGCACGCCGATTT

>LR134376|6|6|2478251-2478373|CRISPRCasFinder
CAACAGGCGAATCGAGATGAGCACGCCGATTT	ACCGCTGCGAGCATCCCATTCATCTGCTGGCGCAGGCGTTGGTATGAGGGCTGGCATGA
CAACAGGCGAATCAAGATGAGCACGCCGATTT

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG96723.1\|2468266_2469952_+\|transporter	unknown	unknown	gnl\|CDD\|179905
LR134376.1\|VEG96728.1\|2475654_2476932_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	unknown	unknown	gnl\|CDD\|213807
LR134376.1\|VEG96724.1\|2470161_2471694_+\|Slt-family-transglycosylase	unknown	unknown	gnl\|CDD\|381606
LR134376.1\|VEG96731.1\|2494676_2496170_+\|cytochrome-c552	unknown	unknown	gnl\|CDD\|236854
LR134376.1\|VEG96722.1\|2465271_2467284_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
LR134376.1\|VEG96727.1\|2473957_2475658_+\|sn-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
LR134376.1\|VEG96735.1\|2498716_2500690_+\|cytochrome-c-type-biogenesis-protein-NrfE	unknown	unknown	gnl\|CDD\|274448
LR134376.1\|VEG96733.1\|2496813_2497494_+\|4Fe-4S-ferredoxin	unknown	unknown	gnl\|CDD\|274451
LR134376.1\|VEG96721.1\|2464993_2465275_-\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|225876
LR134376.1\|VEG96732.1\|2496220_2496817_+\|formate-dependent-nitrite-reductase,-penta-heme-cytochrome-c	unknown	unknown	gnl\|CDD\|183264
LR134376.1\|VEG96725.1\|2471851_2473063_-\|Mlc-protein	unknown	unknown	gnl\|CDD\|224851
LR134376.1\|VEG96739.1\|2503397_2504318_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|236952
LR134376.1\|VEG96738.1\|2502526_2502982_+\|MutT/nudix-family-protein	unknown	unknown	gnl\|CDD\|240051
LR134376.1\|VEG96730.1\|2478609_2494002_-\|type-I-secretion-target-ggxgxdxxx-repeat-(2-copies)-domain-containing-protein	unknown	unknown	gnl\|CDD\|132699
LR134376.1\|VEG96729.1\|2477035_2478238_+\|sn-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
LR134376.1\|VEG96726.1\|2473310_2473766_+\|SecC-motif-containing-protein	unknown	unknown	gnl\|CDD\|225557
LR134376.1\|VEG96734.1\|2497490_2498447_+\|protein-NrfD	unknown	unknown	gnl\|CDD\|274450
LR134376.1\|VEG96720.1\|2464183_2464852_-\|DedA-protein	unknown	unknown	gnl\|CDD\|182775
LR134376.1\|VEG96736.1\|2500686_2501253_+\|thiol:disulfide-interchange-protein-DsbE	unknown	unknown	gnl\|CDD\|239308
LR134376.1\|VEG96737.1\|2501249_2502434_+\|formate-dependent-nitrite-reductase-complex-subunit-NrfF	unknown	unknown	gnl\|CDD\|274449

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG96723.1\|2468266_2469952_+\|transporter	gnl\|CDD\|179905	PRK04972, PRK04972, putative transporter; Provisional.	0
LR134376.1\|VEG96728.1\|2475654_2476932_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	gnl\|CDD\|213807	TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. [Energy metabolism, Anaerobic].	0
LR134376.1\|VEG96724.1\|2470161_2471694_+\|Slt-family-transglycosylase	gnl\|CDD\|381606	cd13403, MLTF-like, membrane-bound lytic murein transglycosylase F (MLTF) and similar proteins. This subfamily includes membrane-bound lytic murein transglycosylase F (MltF, murein lyase F) that degrades murein glycan strands. It is responsible for catalyzing the release of 1,6-anhydromuropeptides from peptidoglycan. Lytic transglycosylase catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do goose-type lysozymes. However, in addition, it also makes a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.33574e-67
LR134376.1\|VEG96731.1\|2494676_2496170_+\|cytochrome-c552	gnl\|CDD\|236854	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase.	0
LR134376.1\|VEG96722.1\|2465271_2467284_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
LR134376.1\|VEG96727.1\|2473957_2475658_+\|sn-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
LR134376.1\|VEG96735.1\|2498716_2500690_+\|cytochrome-c-type-biogenesis-protein-NrfE	gnl\|CDD\|274448	TIGR03145, cyt_nit_nrfE, cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.	0
LR134376.1\|VEG96733.1\|2496813_2497494_+\|4Fe-4S-ferredoxin	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	6.69847e-128
LR134376.1\|VEG96721.1\|2464993_2465275_-\|Uncharacterized-conserved-protein	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	1.78007e-13
LR134376.1\|VEG96732.1\|2496220_2496817_+\|formate-dependent-nitrite-reductase,-penta-heme-cytochrome-c	gnl\|CDD\|183264	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional.	9.47076e-78
LR134376.1\|VEG96725.1\|2471851_2473063_-\|Mlc-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	4.51316e-40
LR134376.1\|VEG96739.1\|2503397_2504318_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|236952	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional.	1.77037e-87
LR134376.1\|VEG96738.1\|2502526_2502982_+\|MutT/nudix-family-protein	gnl\|CDD\|240051	cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	3.6462e-71
LR134376.1\|VEG96730.1\|2478609_2494002_-\|type-I-secretion-target-ggxgxdxxx-repeat-(2-copies)-domain-containing-protein	gnl\|CDD\|132699	TIGR03660, T1SS_rpt_143, T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion. [Cellular processes, Pathogenesis].	5.06158e-19
LR134376.1\|VEG96729.1\|2477035_2478238_+\|sn-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
LR134376.1\|VEG96726.1\|2473310_2473766_+\|SecC-motif-containing-protein	gnl\|CDD\|225557	COG3012, COG3012, Uncharacterized protein conserved in bacteria [Function unknown].	3.80798e-58
LR134376.1\|VEG96734.1\|2497490_2498447_+\|protein-NrfD	gnl\|CDD\|274450	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit. Members of this protein family are NrfD, a highly hydrophobic protein encoded in the nrf operon, which encodes cytochrome c nitrite reductase. This multiple heme-containing enzyme can reduce nitrite to ammonia. Members belong to a broader Pfam protein family, pfam03916, which also contains an NrfD-related subunit of polysulphide reductase. [Energy metabolism, Electron transport].	5.91811e-142
LR134376.1\|VEG96720.1\|2464183_2464852_-\|DedA-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.04511e-110
LR134376.1\|VEG96736.1\|2500686_2501253_+\|thiol:disulfide-interchange-protein-DsbE	gnl\|CDD\|239308	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.	1.32398e-53
LR134376.1\|VEG96737.1\|2501249_2502434_+\|formate-dependent-nitrite-reductase-complex-subunit-NrfF	gnl\|CDD\|274449	TIGR03147, cyt_nit_nrfF, cytochrome c nitrite reductase, accessory protein NrfF. [Energy metabolism, Electron transport].	2.20341e-63

>LR134376.1|VEG96729.1|2477035_2478238_+|sn-glycerol-3-phosphate-dehydrogenase-subunit-C
MLLDHANQTFDQCIKCTVCTAYCPVAKANPAYPGPKQAGPDGERLRIKSPELFDSALKHCTNCKRCEVACPSGVRIGDIIAKAKDKYSGFKPGIREFVLSHTDLMGGMSTLMAPVVNFTTGLKPMKLVLDKALGVSSHRDLPKYSQGTFRGWYKKQKASQARFERQIAYFHGCYVNYNHPQLGKELMQVLNAMNIGMQLLEREKCCGVPLIANGFMDKAKRQAAFNIQQLENTLLGNEMPLLATSSTCGFTLRDEYPHLLEQDNHKVRDRISLVTRFLWNEFYQGNKPAMKPLNLHIAYHTPCHMEKMGGVIYTLELLRAIPGVRVTVLESQCCGIAGTYGFKSENYQTSQAIGEGLFDQINRLKPDLVITDCETCKWQIEMSTAFRCEHPIHLLAQALI
>LR134376.1|VEG96728.1|2475654_2476932_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B
MKFDSIVIGGGMAGLSAALRLAEAGQKTLLMASGQSALHFSSGSIDLLESDGDPRAALPAFLAAHPEHPYGKVGLANIEASLADLQRHCAEEGLPLFRQERNHQRLTPIGTLKSTWLSPATCACLTDAPAPAAILLATLAGFRDFHPALAAANLAAQPRFAHCRILTGEIRLPQLAEFSRNPHEFRSADIARLFDKQQHDKQDLLADLAREIGRMVQECGEPGCRHIVLPACLSLGLVGPRLAELEQRTGCTIKEVATMPPSLIGMRMQEALKRRFMALGGTFLTSERVLGASFDGDKVIGVHSQNGDDQLFEADHFVLASGSFFSRGLESRLGGIREPIFDADVLSLPERDAWAGRRLFDHHPFMGFGVKTDAQLRVLRGGKPLVNLYGAGSVLAHYDPVREGSGSGVAVATGWQAAGHILAGV
>LR134376.1|VEG96727.1|2473957_2475658_+|sn-glycerol-3-phosphate-dehydrogenase-subunit-A
MKRITTEVVIIGGGATGAGIMRDCALRGIDCILLERDDIAAGTTGRNHGLLHSGARYAVTDPESARECIAENRILKRIASHCVEATGGLFVTLPEDDIHFQTTFMAACAQAGIDTRQLDPREALLLEPNANPAMIGAIHVPDGTVDPFRLAAANVLDAKEHGARIFTHSKVLGLLRSQDRVHGVKAINTRTGEAFEVECQEVINAAGIWGQQICEYADLGIRMFPAKGSLLIMDYRINQLVLNRARKPADADILVPGDTISLIGTTSSRIDYNKIDQLTVDPEEVEVLLREGIKLAPIMARTRLLRAYAGVRPLVAVDGDETGRNISRGIVLLDHGERDGLQGFNTITGGKLMTYRLMAEMATDLIAKKIGNKVPCLTAELSLPGSREPEKVSAPGLSAPVEGSAQYRHGERVIAFFRDNPKANALICECEMVTAGEIEYALRELDVDNLVDLRRRTRLGMGPCQGELCAYRAAGLMQEYGKADGREACVMLRQFLEERYKGTRPVLWGDALREAEFTYWIYEGLFGLGEWTAPHLVAEPPFPLDTAAKSAKGDASQALSTQGEPS
>LR134376.1|VEG96726.1|2473310_2473766_+|SecC-motif-containing-protein
MSTCPCGSSLSLALCCGLLHDGQPAASAEQLMRSRYSAFVLGLGDYLVHSWHPDHLGGLTADQLSHTDTRWDGLEILAARGGPADDTGMVEFKAWFKEEDERHCLHERSRFVRHQGRWVYADGEQDPAPLKIGRNDPCPCGSGKKHKKCCG
>LR134376.1|VEG96725.1|2471851_2473063_-|Mlc-protein
MNEIVKGSIDLIRQLNYGLVYASLEEHKELSRTDLSRLTGLSPASITKITRELLDGGLVVTCGESSVGRGRRQTLLRINERRFQFLSMRLGRGYVDMALFDLAGRSLARHRHLFSEAERADLLASLVRAIDGFLPKKSLRLACIALCLPGQVERHSGMVKHFPFYDLRNWPLGPTLQQAFEVPVLVSGDVRTWIQAEREWGAAKNCADAVLVFVHNDIGVGMVVNGQLIESESALLGDLSHLQLEPYGQRCYCGGFGCACTLVTNQALEAQYRDLRERMQEHDLPASVNIRELCELALAGNSLCQDILHQAAGRLSRVLSNLICLLNPGKLLLGGEITRADRLLFPMLHQSLASQLPAEYLVRLQIESTHFYEDPTKPTSVQVHKALRDGSLLLDLLRGDKEA
>LR134376.1|VEG96724.1|2470161_2471694_+|Slt-family-transglycosylase
MKYLWIVMIWVLGSLTPAWSANADKTTTKENEEEDRSALIFASKDLAKPMLGDLDAMLERRTIRVLTTYNKTGYFIHKGVQRGVTYDAFMQVEKRLNEQLRKDKAIKRHLKLNFVFIPVAREALLQALMEGKGDIAAANLTITDKRRQQGVEFTAPLLENVRELLISGPDSPKVESAADLGGKSVYVRPSSSYFESLVAYNQARKEAGEPLIDIQPASEVLEDEDLVEMVNAGLLPFIVMDEHKARFWQKIFPAIQIHEEPVFRDGGIIAWAVRKESPQLLAMLNEQIAALRGKSTGEALLARYLKQNKFIKSAAAEAERKKFLQVVELFRQYGERFDVDWLLIAAQGYQESALNQKARSRVGAIGIMQIMPATGKGLKVGDIRQLEPNIHGGVKYMRWMIDHYYADEPMTALDKALFSFASYNAGPARVARLRAEAKKRGLDPNVWFHNVEYVAAEKIGPETVTYVGNIYKYYIAYKLVMEQVTLKQKATDAIKQQEAAGKPVSGAEKS
>LR134376.1|VEG96723.1|2468266_2469952_+|transporter
MTIDFVTLLHQSDSLLLFVVLAFGLLLGKVRLGNFQIGNTIGVLFTALLFGQMGFEFTATTENVGFMLFIFCVGIEAGPHFFSVFLRDGIHYITLTLVILLTALLLTVGLAKFFNLGPGMAAGILAGSLTSTPALVGAQDALRSGLLNLPHQTDMQSVLDNMGIGYALTYLVGLVGLMLVVRYLPSLARLDLNTEAQKIARERGLSDNESRKTYLPIIRAYRVGPELAAWIGGRTLRETGIYPHTGCYVERIRRNGILASPDGDAVIQEGDEIALVGYPESHEKLDVNYRNGKEVFDRNLLDLQIVTEEIVVKNDAVVGRHLVELNLTEKGCFLNRVVRSQIEMPFDRNIMLQKGDVLQISGEKQRVKLLANKIGFISIHSQTTDLVAFTTFFVLGLLIGSVSLVFGQIEFGLGNAVGLLLAGILMGYLRANHPTVGYVPPGALRLAKDLGLAVFMVSTGLKAGGGILDHLSEVGAVVLFSGMLVTTLPVLVGYLFGVWVLKMNPALLLGAITGARTCAPAMDVVNEAANSSIPALGYAGTYAVANVMLTLAGSFIIGFWF
>LR134376.1|VEG96722.1|2465271_2467284_-|excinuclease-ABC-subunit-B
MNKPFKLASQFQPAGDQPEAIARLLDGIESGLAHQTLLGVTGSGKTFTMANVIATLNRPTMILAPNKTLAAQLYGEMKEFFPENSVEYFVSYYDYYQPEAYVPTTDTFIEKDASINDHIEQMRLSATKALLERRDVVIVASVSAIYGLGDPQAYLSMMLHLKVGDIINQRDILRRLAELQYTRNDVAFGRGTFRVRGEVIDIYPAESDKLALRVELFDEEVERLSQFDPLTGAIEQTVVRYTIYPKTHYATPRETILGAIDHIKEELKGRREQLLSLGKLVEEQRISQRTQFDIEMMQELGYCSGIENYSRYLSGRAPGEPPPTLFDYLPGDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEYGFRLPSALDNRPLKFDEFEALMPQTVFVSATPGPYELEKSGEDVVQQVVRPTGLLDPQIEVRPVTTQVDDLLSEIRLRVAVEERVLVTTLTKRMAEDLTEYLADHDVRVRYLHSDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIGRAARNLNGRVILYGDTITNSMRVAIEETERRRALQHAHNLEHGITPRGLNKSVGDAMDMGGSRTAGKAGRGGRKAAEPQGEYHLRTASEIAKEIKRMEEQMFQHARDLEFEQAAAMRDQIQRLRSELIES
>LR134376.1|VEG96721.1|2464993_2465275_-|Uncharacterized-conserved-protein
MSAGFGKKPSGKRWLLWRRLRRLYFGFRHPATPWWAKGLVILILLYGISPVDLIPDLVPIFGWFDDISLLLLLLWGWESCLPAAVRQGLDALE
>LR134376.1|VEG96720.1|2464183_2464852_-|DedA-protein
MGMEKMDLILFAIDFILHVDVHLKELFEHYGVWVYAILFLIIFCETGLVVTPFLPGDSLLFAAGALTVGSVLDVHTLAAVLIVAAVLGNVVNYTIGHFFGEQLFRNPDSKIFRRDYLDKTHAFYAKHGGKTIIITRFLPIVRTFAPFVAGMGAMTYPRFLAFNLVGGLLWVLSFVYAGHFFGNLPVVRHNFTLLIFGIIVVSLLPMIVGMVKARRSRGKTAS
>LR134376.1|VEG96730.1|2478609_2494002_-|type-I-secretion-target-ggxgxdxxx-repeat-(2-copies)-domain-containing-protein
MAELRIEKPTLITQLEGTVLVMDADGSTRRATLGMQLQPGERLLAESDGRFELADPAGETHEPAQPDPVPGAQTAAVDPELASLQEAIRQGADPTAVFEETAAGNAAAATGGGVVGSSAGGFVVVDRANDATLAEAGFDTDHQRLPQGNDDPYVEDQDQVAEITITEPQTLDNIINADEATGVIIRGTVEDVEVGQTVTVTLIDQDGNRLTTTTVVLPGFVWEADFGDVTGKLVDGPLSIQADTQDAAGNRASDLGQTLLDTITTITLDLSDESDTGASQVDDLTRDTTPLLQGKGEPGATVTLSLGGKVLTVLTVDGNGNWQYQIPSDMADGAYDFRVDSVDIAGNRASDTLTVTVDTRAGIDIDDLDTQNILGHDNVTLSGSTTQVEAGQSVTITLIGQNGQTLYSGAALVGSDGRWQLNGLDLSSLSGPYEVRAEVTDLAGNRVIDGAPLIGQSDTLTLSEADLADGPVSATGSLHTGAGMDGNLQVGFAADQGALQDLGLTSQGSALSYQLSGQTLTATAGGATVFTLTLANDGSYRIVWNQSLDHGQDSLSLPFSLEYRDSDGDLVNANLDIKLVDSTPPDFTLAPITLTEDAFTDQGAVVGQSQFLVGHQADPLLADSVAFADQAGTLARLNGSDLRSDGHALSFEFSGDRLLTGYYLDDNGNRVEVLKAELSASQSGSDIEGKVTVSLTGPLDHQGSDQLSLELSVCAKEIDGDETRADLVVTLDDGIDPSLGLDAGISLQEGGPSQSLDGQLPVHVGSDRLVSLNFEANQPGLDDLTSGGKPTTYQVNGNQITLLDAGGKTVLTVTLDLDGKYHVQLNGVLDQPVNTDSVNLGLQVQGTDFDGDQSNLGTLNIAITDGALPGVDAVSLNLVEDSDWSAGQTLSGDLNISAGTDPLANISFDASQPGLQGLTSGGQPVQISVSGNSISGTVNGQNVFTLSLDQQGHYVFTLNQPLDQGSADSRLLAGFTLTDSDGDKVSSSLSVSIGDGANPVISAVTGTSLTEADQGDGAVVGNMSFTVSHGSDALAPDSLKFDLGAIQQSLDGKFSSHGSPITFSLNADGSLVGTSADGREVLRAELDLVDNNGNWSVTAKVTLSGELDHQGNESLDLPLNVTLTDKDGDSASTTLPLVIKDGNAPGFVAGSGVSLDEGNLDGSNALTGTGHFSVNAGSDRVSEVSFAEVAEQPALTALGQQVKYELVDGDPSIPGNQILKGYVEVNGQRIEVLEVEISGDLKGAASNDFDYKVTLFEGVHQANGSSTELPFKLNIVDSDKGAGNNDSTTGTLNVSIGEGNKPVISLTGVTLNEGRFDGAASGVTADDQHATGKLTITADSDPVVDVRLTLSGQVLDAGGQPITHNGETLTWQDVPGSNGHSFQGLTASGTLVLTVTLPSVPGRIEAHSSATLDYQVTVHTNLDHGASDNLSLTLPLQVTDSDGTLINGDTIAVITDAADPSLGIDAGISLQEGGASQSLDGQLPVHVGSDRLVSLNFEASQPGLDDLTSGGKPTSYQVNGNQITLLDAGGKTILTVTLDLDGKYHVQLDGVLDQPVNTDSVNLGLQVQGTDFDGDQSNLGTLNIAITDGALPGVDAVSLNLVEDGDWNAGQTLSGDLNITAGTDPLANISFDASQPGLQGLTSGGQPVQISVSGNSISGSVNGQNVFTLSLDQKGHYVFTLNQPLDQGSADSRLLAGFTLTDSDGDKVSSSLSVSIGDGANPVISAVTGTSLTEADQGDGAVVGNMSFTVSHGSDALAPDSLKFDLGAIQQSLDGKFSSHGSPITFSLNADGSLVGTSADGREVLRAELDLVDNNGNWSVTAKVTLSGELDHQGNESLDLPLNVTLTDKDGDSASTTLPLVIKDGNAPGFVAGSGVSLDEGNLDGSNALTGTGHFSVNAGSDRVSEVSFAEVAEQPALTALGQQVKYELVDGDPSIPGNQILKGYVEVNGQRIEVLEVEISGDLKGAASNDFDYKVTLFEGVHQANGSSTELPFKLNIVDSDKGAGNNDSTTGTLNVSIGEGNKPVISLTGVTLNEGRFDGAASGVTADDQHATGKLTITADSDPVVDVRLTLSGQVLDAGGQPITHNGETLTWQDVPGSNGHSFQGLTASGTLVLTVTLPSVPGRIEAHSSATLDYQVTVHTNLDHGASDNLSLTLPLQVTDSDGTLINGDTIAVITDAADPSLGIDAGISLQEGGASQSLDGQLPVHVGSDRLVSLNFEASQPGLDDLTSGGKPTSYQVNGNQITLLDAGGKTILTVTLDLDGKYHVQLDGVLDQPVNTDSVNLGLQVQGTDFDGDQSNLGTLNIAITDGALPGVDAVSLNLVEDGDWNAGQTLSGDLNITAGTDPLANISFDASQPGLQGLTSGGQPVQISVSGNSISGSVNGQNVFTLSLDQKGHYVFTLNQPLDQGSADSRLLAGFTLTDSDGDKVSSSLSVSIGDGANPVISAVTGTSLTEADQGDGAVVGNMSFTVSHGSDALAPDSLKFDLGAIQQSLDGKFSSHGSPITFSLDADGSLVGTSVDGREVLRAELSLVDNNGNWSVTAKVTLSGELDHQGNESLDLPLNVTLTDKDGDSASTTLPLVIKDGNAPGFVAGRGVSLDEGNLDGSNALTGTGHFSVNAGSDKVSEVSFADVAEQPALTALGQQVKYELVDGDPSIPGNQILKGYVEVNGQRIEVLQVEISGDLKGAASNDFDYKVTLFEGVHQANGSSTELPFKLNIVDSDKGAGNNDSTTGTLNVSIGEGNKPVISLTGVTLNEGRFDGAASGATGDDQQATGTLTITADSDPVVGVRLTLSGQVVDASGQPITHNGETLTWQEVPGSNGHSFQGVTASGTLVLTVTLPSVPGRIEAHNSATLDYEVTVHTNLDHGASDNLSLTLPLQVTDSDGTLITGDTTVVITDAADPLISAIESVRVEEADLDASGSQHPGTTPAENGEAAGGKVTIGAGSDRIASLELDVAAFNQANHLTSGGKEVTLAAHSPGWYLASAEGGKPVFWVHLDVNGSYSFHLVGQLDHGSQGKDELGIELPLFVTDFDGDRSPNVTVEVTVQDDMPIGTELAHNLSEAGSVVSGDLLPPANEGADGARVASVTVNGQVHDINGSLTLEVMSPDGKQVMGSLTIGQNGNYSFTPRPGFDHDDASLSQTITAQIVDGDGDTAKSTLTLNLQDEAVRFTVDGATGQEDQGAQDPSQGIAIHMNLDIGDFDRGEHVDQLLIQAPANAHGTFYYNGVALTTTADGKWFIVPPEAMVTTDKVNYSTSGLTFVPADDWSSWSNNKQPLHFQVQVQVGVTEGTPPPAVNGDLAITVQGIADKPVWVSGSTDQHYSINEDGNGIALNVKAELTDTDGSETLGYQIHWESGHGSLTLNGQVLQPGSNGLYTVKAGDINKITVVPDKDYSGDIKLTVTPVSTEKAPVVSGQDKALGDPIELVINVNPQADDAKLSIRDIQGREDSQLDLGSKISLAHLGDLSDGSEKLFVRIDGLPAGATLLLGGVVVVQDAKGYYEVPADRIGELKLQPPKNSNIDFDLTIKGVVKDSATLTDANGQTHTVVNEKETGSQSLHVDLIGVVDQPHFDLGTTGWTAEGNGYTTTIQEDGRAPLDFRLESGEKTDTPLDNSESLNLVLEGLPEGAKVFDASGKELTLTFAGLDAQGKPTYQVDVSDLGNLQIQPPANSTADIHLIAHVVVTENDGDSKGFDVPLTIKVEPEIDAGNYDKSSHGLEDQFVVLDWHPDLTDGAEQVTHLSLSGIEPGYEIWVTDANGTHQLNLNGGAVDLSDADLQSLLNGGKLLVKAPQDSDKDTNIQSHVTVTQHDVDSSVVVDKVIDGQLHVDIQAVVEPDGNLVQTGGTLESPDGHDIPLGGVFEFQDLDPSSVETIDYLVISDLPPGFVVVGGISDGKGNWTVPNGALGSYALHAPNGFTGKVEFKVSALVHDLSDDGDVSASVRKDLNASADFGPVTTPDQKAADIDFDNSAPITGVEDHGVNFGSQLKSMVTLGSVDGGDDELSIVITGLPQGVSVQGLTFDFANGEYLIKLPGGLDDLDKLTLSLPEDYAGNDLDFNVRLVNTDTVSGDTKVVEKEVSLSITPEVDINGGADGLPELQLQIKDVNGDGQPDNLEDTEIHLDLSVKLADISPSVADGGLETVESVTLTVDAKYGHFLDGNGQPTNSLVVKDPAALKDLVFVPREHFSGQVPLDIKVDILDTATTGEDRGSWSGQVGFEVKPVNDPANISVHDVNGNEDGRVSLAGFGASLIDNDGSEQIVALQIKGVPDGFTLSAPAVNNGGGVWQVPVGTDFAKLSLIPPANFSGSLDLGLSVFTLDKGLTVPLETSGNFTVTVNPVGDAIIADMQDKASGTEGDVITLNLGLETRDTQATGGTAGNVHENGPEQVRVTLEGVPDGAEIRLPSGVDGSVVDLGGGRWQITTDGGKLDAIELVTKDANGVLDLKVTAQSLDNGALGPEVNGHIQVEVSAVNDAPINLLPSDPQVAQEDKPFTIQGLQVKDVDAGSGNIEVRLSVNHGTLTVLNAAGVAVSGDGSGSLVLNGTLAQINALLNGGIDYKGSANFHGDDALTMTTNDLGNTGSGGALSDSDVLPIEVQPVNDAPVNLLPTEPQIAQEDTPFRIQGLQVNDVDAGGSPIKVTLSVMHGILELPAGSGVTVTGSGSDTLVLSGSQAEINALLAGGVTYQGEQDFNGQDALTMVTDDLGNTGSGGALGDSDVLPIEVQPVNDAPINQVPAAMSVKEDGSLSLSGISVKDVDAGSAPLSMVLRVEHGVLTLLGAAGAVSVQGAGTGEITLVGSLSDLNSLINGSLHYEPAKDFWGQDNLTITTSDQGNSGSGGALTDSTQVGITVTAEADDPHLSLGTHDIHALQGAWVPLNLSASVVNPATGELSVRIQNLGGAQVVDEHGQSVGHADSNGDWLLPMDQSVPIYLKDLPMGDHALTLSAESSAGGSTLSSTPDTVTVHSQSGHDLLGSDQNDWLFGSSGDDRILGGLGDDVLRGGHGNDILTGGAGSDLFVWGSGDEGTTGQPAIDTITDFHPEEGDKIDLADLLQGVTDNSVDGLLNHLSASVATGSGGLSDVSLSVSPAGDGQVTQQITLKDVDLNSWNLSGSSSHDILQSMLDNHSLIIQHP
>LR134376.1|VEG96731.1|2494676_2496170_+|cytochrome-c552
MSTQQDGTVRSGNDIYLGVMTVGSHNKLFRPGLAALLLTTLLSTGSWAQADEAKGKIEARSELFAKDHADQFNSWESTSESRERTDALAEDPQMVVLWAGYPFSKDYNKPRGHFYALTDVRESLRTGAPKTAEDGPLPMACWSCKGPDVARVIDEKGEDGYFKGMWAKGGPEIVNTIGCADCHDTASKEFKEGKPALHLSRPYADRAMTAINKPFKQQGRFDQQSQVCGQCHVEYYFNGPTKAVKFPWDKGTTVEQMEEYYDEIGFSDWVHALSKTPMLKAQHPEYETWRAGIHGQNNVACVDCHMPKVQNEQGKVYTDHKVGNPFDRFEQTCRNCHTQSKEMLQGVVKQRKDAVTEIKLKVEKQLVHAHFEAKAAWDAGATEAEMKDILQDIRHAQWRWDFSIASHGVQMHAPEVALRMLGTALDKAADARTKLARLLAAKGISHEIAIPDISTKEKAQAALGMDMKQMNADKAQFLKTTVPAWEAEAKAAGRLAQ
>LR134376.1|VEG96732.1|2496220_2496817_+|formate-dependent-nitrite-reductase,-penta-heme-cytochrome-c
MGDLTMDFLRLMLMAAMLLTSLQGQAADSAAAPAALPQTHEVEFLRNPDKACTDCHKEQQEGMHGKHGQATNPNNLAPVTCTNCHGNPSPQHREGVKDVMRFSDSFNEKQGDNGYPIAEQNGVCMSCHEPKPLREALWAHDVHASKLSCTSCHALHPAKEPMVGIPEKSRIKLCVDCHSKQHEAKAAGLQVNAGKEAP
>LR134376.1|VEG96733.1|2496813_2497494_+|4Fe-4S-ferredoxin
MSCSRRQFMAGMGAGALIMMTGPARANAGTLAHSQTIDGVRYGMLHDETACIGCTACMDACREVNQVPQGVSRLEILRTGPVGEFPNADYHFFRKSCQHCDNAPCVHVCPTGASHIRAEDGIVDVNPDLCVGCMYCLAACPYQVRFINPVTRVADKCDFCRKTNLAQGKEPACVASCPTRALVFGNLDDPGSPIAKRLVKETTYRYKQALGTSPKMYRVPKGEIKS
>LR134376.1|VEG96734.1|2497490_2498447_+|protein-NrfD
MTMQAAFHFPSLVWDWPIAIYLFLLGISAGATSLSVLLRRKGAGSESGIIKATALLAPLCVMLGLLILIFHLARPWTFWKLMFHYQFDSVMSMGVMLFQLYMAVLFAWLGVVFRAEIEALRSRLFKQKFAFVDGLIGLLARVERLLAPLLLLLAVLLGAYTGFLLSALKTYPLLNNPVLPVLFLVSGIGSGIAATILLAVTLFKEDHHSVGVHFVHRFERPLLAVEILLLICFFTGLYFGGGQKEVAMWAAIGGGFWSQVFWVGVVGIGMLLPQLLGLLTPAPLRERRGHLVLVCSLTLLGVLLLRYFVLYAGQMTVV
>LR134376.1|VEG96735.1|2498716_2500690_+|cytochrome-c-type-biogenesis-protein-NrfE
MLAELGYLSLLLATALSLVQGTLPWLGLRLASRPLLGCAKPLALLNAALLGAALGLLAIGFGQNDFTLVYVAQHANSALPMGFKLAAVWGGHEGSMLFFVFALALWGALVALCSMRVDPLISVRVLAIMGLIVGLFGLYTLAFSSPFDRQFPGPLEGRDLNPMLQDIGLIIHPPLLYLGYVGFAVNFAFAMAALHSGRLDGAVAHWSRPWALGSWVFLTAGIVLGSWWAYYELGWGGWWFWDPVENASLLPWLLGTALLHALVVCEKRGAYGHGVLLLSIFTFSLSLLGTFVVRSGVLTSVHAFAVDPNRGLTLLLLLGLLLTTALTLFALRADTRSPYARFGFWSKEGLLGAAVLLLCVACASVLLGTFYPMVFKSLHLGSLSVGAPYFNAIFVPLALVLMALMTQIPRLRWQGLKASSPIKTLLPLLLGMLGGGLLSLCYREQGALSWTGLIANVVSLWLLASLLLNFPFKSGGLSAARLGSLLAHLGVAVCALGINQVSHHSQEGGTVLKAGSPYSLGAYEFRYEGSEPLLGPNYTAERITLSVHQEGKEVARLQPERRHYSVRTMNMNEPGIAWGLFGDLYVVLGEKMGPDAYAMRLHHKPLVRWIWLGGLLMMAGGALRLLGRRPLLVAQCPSASQACNISPGQTRQPEEAQ
>LR134376.1|VEG96736.1|2500686_2501253_+|thiol:disulfide-interchange-protein-DsbE
MSRLRLFIPLLLTLGLGTLLWLGLGNDPYGQDEATLGRGLPDWQSADLFGGDPIHTRAIKGKPFVLNVWASWCPNCRAEHPLLAELAGTVPLYGLNYRDKGDAARAWLKAAGNPYNAVLADPDGKLALELGVYGTPETYLFAADGTLLSRHTGELTREVWQRQFVPKLNEARAAPLASPAPARQESKP
>LR134376.1|VEG96737.1|2501249_2502434_+|formate-dependent-nitrite-reductase-complex-subunit-NrfF
MKAPIILCALLLVVDVTLSPGALASGVDTYQFRHPELQSRAQELARALRCPQCQNQNLVESNSPIARDLRLEVYRWVDEGQSDEQVIARMTARFGDFVRYDPPLKAGTALLWAGPLLLLLLALLLLRRSLRRRHQARAPLLGYQPQGAPAQDPRAELNRLIMVEQQAGLAPHSRLHRELEQARLANATPVAEQALRARLADSGPLRPLPWLLLGMVLLALVSGFYASTGRYQAWQAYQSRPDPLAGLSPRDLQDKELGALHRRLQDNPRDLDGWAELGQLYLYRDEYEDAWLAYQRLALLEGGASAATLAAQATVRYYQAGQQLTPEAHRLLDAALALDKGEVSALMLLAADHFLHGRYGDAIALWQRLLDGERPRINRAALIQAIQTARIMGG
>LR134376.1|VEG96738.1|2502526_2502982_+|MutT/nudix-family-protein
MIPIRCHAVAGVALSEIDGQTKMLLMNRVKGGFWCHVAGTVEAGETGWQTIVREFGEETGIAVSELYNGQYLEQFYEAASNTVMVVPVFVAYCPPDQQVRLNDEHTEYRWCSLAEAKTLVSFPGQKALYDHVWHCFVASRPSALMKVNIDP
>LR134376.1|VEG96739.1|2503397_2504318_+|D-alanyl-D-alanine-carboxypeptidase
MNLRPFLPVLLGAFLLPVSMESAHANPFSATSSSTNSLIQTRNNLSLSSDAFVVANSRTGEILAERNADRVMPIASITKLMTALVVLDGNQRLADPITVTMDDVDRIKGTGSRLAIGSRLSRADMLHIALMSSENRAASALARHYPGGRRAFVEAMNAKARMLGMWDTHFADSTGLNPRNVSSAHDLAKLAATASSYPLIRQYTSTEHRLVRNGKRQMQYHNSNRLVREGNWPILVSKTGYIREAGRCLVMGTTVSNEPVIMVLLHADTTAERVADAKRIKTWLETSGRMTLTAQSTPQTKLFSAP

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Crispr_ID: LR134376_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_7

2908362-2908495

Orphan

Consensus_repeat	Method
GTCATGATGGCTCCGGCGACAGACGTCGATATGCTGGTGCGTCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134376_7

>merge|LR134376|7|2908362-2908495|CRISPRCasFinder
GTCATGATGGCTCCGGCGACAGACGTCGATATGCTGGTGCGTCACCGCGTTCAGAAACGCCTTGCTGTCGAAGAGAGGTTCAGGAGAAGTCATGATGGCTCCGGCGACAGACGTCGATATGCTGGTGCGTCACC

>LR134376|7|7|2908362-2908495|CRISPRCasFinder
GTCATGATGGCTCCGGCGACAGACGTCGATATGCTGGTGCGTCACC	GCGTTCAGAAACGCCTTGCTGTCGAAGAGAGGTTCAGGAGAA
GTCATGATGGCTCCGGCGACAGACGTCGATATGCTGGTGCGTCACC

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG97106.1\|2900982_2903430_+\|phage-tail-tape-measure-protein,-TP901-family	unknown	unknown	gnl\|CDD\|273790
LR134376.1\|VEG97112.1\|2908674_2909319_-\|response-regulator	unknown	unknown	gnl\|CDD\|236538
LR134376.1\|VEG97115.1\|2910606_2912223_-\|Fumarate-reductase-flavoprotein-subunit-precursor	unknown	unknown	gnl\|CDD\|273816
LR134376.1\|VEG97109.1\|2905671_2906226_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
LR134376.1\|VEG97113.1\|2909567_2910173_-\|cytochrome-c-type-protein-NapC	unknown	unknown	gnl\|CDD\|367425
LR134376.1\|VEG97119.1\|2915676_2915865_-\|Trm112p-like-protein	unknown	unknown	gnl\|CDD\|183328
LR134376.1\|VEG97121.1\|2917061_2918831_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	unknown	unknown	gnl\|CDD\|183016
LR134376.1\|VEG97116.1\|2912386_2914213_+\|two-component-system-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
LR134376.1\|VEG97101.1\|2897950_2898571_+\|putative-tail-fiber-assembly-protein	unknown	unknown	gnl\|CDD\|367075
LR134376.1\|VEG97104.1\|2900531_2900846_+\|phage-P2-GpE-like-tail-protein	unknown	unknown	gnl\|CDD\|378397
LR134376.1\|VEG97117.1\|2914209_2914860_+\|transcriptional-regulatory-protein-FixJ	unknown	unknown	gnl\|CDD\|226932
LR134376.1\|VEG97100.1\|2896799_2897951_+\|putative-bacteriophage-tail-fiber-protein	unknown	unknown	gnl\|CDD\|372197
LR134376.1\|VEG97107.1\|2903442_2903934_+\|Phage-protein-U	unknown	unknown	gnl\|CDD\|226030
LR134376.1\|VEG97120.1\|2916075_2917062_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
LR134376.1\|VEG97118.1\|2914918_2915680_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
LR134376.1\|VEG97102.1\|2898758_2899937_+\|putative-phage-like-protein	unknown	unknown	gnl\|CDD\|164955
LR134376.1\|VEG97105.1\|2900854_2900986_+\|Phage-P2-GpE	unknown	unknown	gnl\|CDD\|368955
LR134376.1\|VEG97108.1\|2903933_2905094_+\|Phage-protein-D	unknown	unknown	gnl\|CDD\|222877
LR134376.1\|VEG97103.1\|2899946_2900465_+\|protein-FII	unknown	unknown	gnl\|CDD\|164995
LR134376.1\|VEG97114.1\|2910184_2910595_-\|Cytochrome-c3	unknown	unknown	gnl\|CDD\|373118

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG97106.1\|2900982_2903430_+\|phage-tail-tape-measure-protein,-TP901-family	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	1.8552e-48
LR134376.1\|VEG97112.1\|2908674_2909319_-\|response-regulator	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	3.35889e-165
LR134376.1\|VEG97115.1\|2910606_2912223_-\|Fumarate-reductase-flavoprotein-subunit-precursor	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	1.83061e-79
LR134376.1\|VEG97109.1\|2905671_2906226_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	9.19593e-84
LR134376.1\|VEG97113.1\|2909567_2910173_-\|cytochrome-c-type-protein-NapC	gnl\|CDD\|367425	pfam03264, Cytochrom_NNT, NapC/NirT cytochrome c family, N-terminal region. Within the NapC/NirT family of cytochrome c proteins, some members, such as NapC and NirT, bind four haem groups, while others, such as TorC, bind five haems. This family aligns the common N-terminal region that contains four haem-binding C-X(2)-CH motifs.	2.8279e-33
LR134376.1\|VEG97119.1\|2915676_2915865_-\|Trm112p-like-protein	gnl\|CDD\|183328	PRK11827, PRK11827, protein YcaR.	1.64352e-19
LR134376.1\|VEG97121.1\|2917061_2918831_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	gnl\|CDD\|183016	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA.	0
LR134376.1\|VEG97116.1\|2912386_2914213_+\|two-component-system-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.54919e-41
LR134376.1\|VEG97101.1\|2897950_2898571_+\|putative-tail-fiber-assembly-protein	gnl\|CDD\|367075	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK. This family contains bacterial and phage tail fibre assembly proteins. E.coli contains several members of this family although the function of these proteins is uncertain. Using the lambda phage members as examples, there are both gptfa and gpK tail proteins here. GpK forms part of the TTC or tail-tip complex that is located at the distal end of the tail. TTCs form the platform on which the tail-tube proteins self-assemble and are also the attachment point for fibers or receptor-binding proteins that mediate phage-adsorption to the surface of the host cell. TTC assembly starts with gpJ, which is also known as the central tail fibre and is involved in host-cell adsorption. It is the C-terminus of gpJ that interacts with the lamB receptor on host cells. A number of intermediates including gpK then interact with gpJ during tail morphogenesis.	8.90381e-18
LR134376.1\|VEG97104.1\|2900531_2900846_+\|phage-P2-GpE-like-tail-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	8.78973e-12
LR134376.1\|VEG97117.1\|2914209_2914860_+\|transcriptional-regulatory-protein-FixJ	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	3.64265e-66
LR134376.1\|VEG97100.1\|2896799_2897951_+\|putative-bacteriophage-tail-fiber-protein	gnl\|CDD\|372197	pfam12571, DUF3751, Phage tail-collar fibre protein. This domain family is found in bacteria and viruses, and is approximately 160 amino acids in length. There are two completely conserved residues (K and W) that may be functionally important. The members are annotated as being putative phage tail or tail-collar proteins.	2.63104e-76
LR134376.1\|VEG97107.1\|2903442_2903934_+\|Phage-protein-U	gnl\|CDD\|226030	COG3499, COG3499, Phage protein U [General function prediction only].	2.44391e-50
LR134376.1\|VEG97120.1\|2916075_2917062_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	1.25743e-170
LR134376.1\|VEG97118.1\|2914918_2915680_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	1.8046e-151
LR134376.1\|VEG97102.1\|2898758_2899937_+\|putative-phage-like-protein	gnl\|CDD\|164955	PHA02560, FI, major tail sheath protein; Provisional.	0
LR134376.1\|VEG97105.1\|2900854_2900986_+\|Phage-P2-GpE	gnl\|CDD\|368955	pfam06528, Phage_P2_GpE, Phage P2 GpE. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.	5.0359e-07
LR134376.1\|VEG97108.1\|2903933_2905094_+\|Phage-protein-D	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	2.54525e-152
LR134376.1\|VEG97103.1\|2899946_2900465_+\|protein-FII	gnl\|CDD\|164995	PHA02600, FII, major tail tube protein; Provisional.	2.87731e-71
LR134376.1\|VEG97114.1\|2910184_2910595_-\|Cytochrome-c3	gnl\|CDD\|373118	pfam14537, Cytochrom_c3_2, Cytochrome c3.	6.96206e-23

>LR134376.1|VEG97109.1|2905671_2906226_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MTNIPNLLTFFRILLIPVFVILFYLPYQWSYMAAAIVFIVAAATDWFDGYLARKLNQSTAFGAFLDPVADKIMVAAALVVIVEHYNTIWVTIPAMTMIGREIIISALREWMAELGKRSSVAVSWIGKWKTMIQMVSLTGLIWQYDIWMVWLAYVLLYVATVLTFWSMFQYMKAAWGDLTYHSRF
>LR134376.1|VEG97108.1|2903933_2905094_+|Phage-protein-D
MGAFDQFGSRLAENLGITNPLDALRQGHPVPAYQVLVDGSDISAAIRPRLMSMTITDNRGFTADTIEITLDDSDGQLDMPRRGATLRALIGWQGQALVDKGTYKIDEVEHGGAPDVLTIRGKSADLRGGMNKLRERSWHQTTVSSIVDQVAAPYQLTPCVGDSLKGQLIDHIDQTNESDLAFLTRLAGQCDAIATVKSGRLMFIKAGQGTNASGKPLPAITITRQDGDQHRFSVADRDAYTGVTAYWQDNKAAEKKKIEVKRKKKTKPKPERPLPPGVVVNKKEHELLVGDSENVKELRHVYANQTNAMRAARAEWERIQRGVAEFNITLAKGRPELYPEQPTTVRGFKPDIDAAPWLLTQVVHDLTNQGYTNRVQLEVKLEELPE
>LR134376.1|VEG97107.1|2903442_2903934_+|Phage-protein-U
MMMTLGWFVFMRSTVAPQSQQDEWAWRHPGNNRVGARPAYQFLGPDDETSTLSGVLLPELTGGALSLDMLRQMGDSGEAFPLIQGDGVMRGSFVIEGISTTRTEFFDDGAARKIEFSIKLKRVDDNDTTFGNTLLNRTAGNLFGRLGVGKLLGSIGNKLGGIL
>LR134376.1|VEG97106.1|2900982_2903430_+|phage-tail-tape-measure-protein,-TP901-family
MNPLKLQILLGAVDKLTAPLKAVSGQSRLTAKDLVDTKKKIRDLETQAGQIEGYKTLGAQIGATKAQLKQAEGSFSELQRKIAETPKPTRLMINEFNKAEKALNQLKTKQGEMITRHAQMGEAMHKTGINTGNLSETQRRLKTDLASANTQLDQQRAKLGQLANQQKRLNQVNANYRQTQELRGQIAGHGATALATGTAMGLTTLKPVIEFARAETSVVDLKVSMMGKGGQVRQEFQSISDLATKLGNKLPGTTADFQNMMSTLIQQGMSAKSILGGLGEATAYLGVQLKMPFDQAALFAAKLQDATGTAEQDMMGLMDTIQRSFYLGVDSGNMLGAFTKLTPAMGILRKSGLEAAKVLAPLVIMADQAGMAGESSGNAYRKVFQMSMNTGKIAKATKGTGLKLNFTDGKGEFAGMENMFAQLAKLKGVNTERRLQVLKGIYGDDAETLQVLELIISKGMDGYRATQKKMADQAALQERVNAQLGTLGSLWDAATGTFTNAMVNFGEAIAPEIKAITQWIGDLSERLGNWAKKNPELSNTLMKIGAIVSVVTIAFGGLSLAVAALLGPMAIMKLTFGILGVTFGGILGAITAVLVPIAALIALGIAIVKFWEPISAFFSGLWQGIMAGLAPVFEAFKPFAPLIDGISAGVKTLSGWFGDLLEPLKFSKETLEGFGSAGQFVGRILGEAFNLALTPLKAFLKGIEWLLESLGILETKKIPKFEIPTANTPGYLNGNFGPPALSSAYTYGTGPRIVPTPTPKPVAAKGGNSTTHHQWNIVQQPGETPDDLVRKIDQRLDQRERQAAARGRATLGDRN
>LR134376.1|VEG97105.1|2900854_2900986_+|Phage-P2-GpE
MAEIAIIAHWPPSEMAAMEISELMGWHQRLVETHNRINGAEEQ
>LR134376.1|VEG97104.1|2900531_2900846_+|phage-P2-GpE-like-tail-protein
MENNVVSIGIPASKTITLDTPVQRGDTQLTELTIRSPKKAGHLRGLNTLDIVQMNVDTLIRLLPRITDLSELEVADMDPADLLKAGVVVVGFLMGSQQEAYLTA
>LR134376.1|VEG97103.1|2899946_2900465_+|protein-FII
MALPKKLKRLNVFLNGDNWVGEAEDFTPAKLSRKFEAYRGGGMGGAVNIDMGLDDSALDVSFTFGGYGDQLLRCMGEPKADGTSLRFAGSVQRDDSAEIVAVEIVCRGRFKELDRGALKAGDNTQAKVGMVNTYYKETVNGQVMHEIDLINMVEIGPDGVDRMAEHRKAIGL
>LR134376.1|VEG97102.1|2898758_2899937_+|putative-phage-like-protein
MALDQFHHGVRVVEVNEGTRTIRTVATAVIGMVCTSEDADATYFPLDKPVLIANLPVAIAKAGSEGNLKKSLQTIYDKVKTIVIVVRVAKGADAAALTSNIIGTIKPDGSYTGLKALERAAPVTTVKPRILCVPDNCTLPVATALGGVAKKLRAFAYVPTIAETVEAALAYRENFASRELMLVHADWTAWDVAANASVKLDACLKAAAMRALIDKEIGWHKTLSNVGVTGVDGMTKALFWDLQDPDTEVGLLNASEVTCLIQSNGFRYWGNRTCSDDPLFCFENYTRTAQVLADTIADAHMWAVDKPMTPTLVKDIIEGIKAKGRELVTGGYLLGFDCWYNEELNDKDTLKAGKLRIDYNYTPVPPLEDLGFQQRITDHYLIDFGARVAAAA
>LR134376.1|VEG97101.1|2897950_2898571_+|putative-tail-fiber-assembly-protein
MAELNEPRVSWGADGWAACNGWAQAHCADAVTAEYLGPQDVWVSVGTGLPAGAYLDAPPAPEEGQAVVRQADGWALVPDYRGVTVYDTATRQPIAISALGPLPELCTLLAPSSPYDVWDGAAWQPDAAAEEQAALSATQTEQSARIATANQQISIIKPAVEGGYAKPEHTQLLADWQRYRYELTLVPEQAGWPESPQWPTEPEKVI
>LR134376.1|VEG97100.1|2896799_2897951_+|putative-bacteriophage-tail-fiber-protein
MSAIYFAIPTDAGQAKIANAIALGIPLKITHMAVGDGNGQPVTPNAAQTTLVREKRRAPLNTLFQDPLNQSQLVAEQIIPEDVGDWWIREAGIFSEDGTLIAIANTPDTYKPLLSSGAGRTQVIRIVLIVSDTSAVELKIDPAVVLATRKYVDDVMKAHKESRDHPDASESAKGFARYASQPQTDAGIADDAAVTPKKMRAALKNKGLTEYGSALIGVPIDWPLAQMPQDIWPDCGMVFLSCAGQGFNTATYPKLAQCYPAGVMPELRGEFIRGWDNGRGVDAGRGLLSAQGDTLLNHQHNMIGMDRASQGGGNYILPNEQFPILGKGFASPVAEYPESSSNAGYNNATGLIKTAMNGATDVGRLGAETRPRNSAFHKIMRAA
>LR134376.1|VEG97112.1|2908674_2909319_-|response-regulator
MINVFLVDDHELVRTGIRRILEDVRGIKVVGEAQSGETAVTFCRQHHPDVILMDMNMPGIGGLEATRKILRIRPDVRIIVLTIHSENPFPTKVMQAGAAGYLTKGAAPDEMIHAIRLVHSGQRYISPEIAQQMALSQFASADENPFKSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLNINGDVELTHLAIRYGMLDADTL
>LR134376.1|VEG97113.1|2909567_2910173_-|cytochrome-c-type-protein-NapC
MNRMKFGLLLACVLGLVSLGISLIGAEVVKATGDERFCGSCHEMKPMVEAYRHDIHGGSNRVGFKAECADCHLPHDNTFNYLLKKATSGLNDVYKVTLTDTSKIDWLGKRDRREEFVYDSGCLSCHQGLLEKTVATNPKSLQMHAHYQEMQQKGEKLQCVSCHVTIGHNGELRSRLNETQPEYQFQHDLRAREAAKAGTVK
>LR134376.1|VEG97114.1|2910184_2910595_-|Cytochrome-c3
MRPLFLTLMALAGLWFGGGALAEPPVTAMTPVSPAASHSLKPHHGKLGFTCENCHQGKDPKQYQRLKTEDCLACHGSAQKVANRTRFMDANHTNPHNSLHDKLDLDCYECHAEHKPSQNLCQTCHDNTRDWFGPTP
>LR134376.1|VEG97115.1|2910606_2912223_-|Fumarate-reductase-flavoprotein-subunit-precursor
MQENSNRSRRDFLTKGLQTAAFASIAAALPAAAAANQAQSCIDPTQLPWDEEMDILIVGSGIAGSVAAIKAAETRTGMKIVIADKMSRLGGSSLISGLNMAVVGSRWQKEMGVTDDSWELLYADMEKESKGFNHPEISKVVAQNSLQLFDFMAEHGVEYDKSMGNGTGVKNLGGHSRARVVWPKEGGTGVIKNLHGYMAKHLPNIEIRKRVKLEEIYRDATGRVVGVRVREEYFFDLNTPDFGRNDDPAFNGTGVTKRYKVKRALVMASGGFNQDRKFRGDEIGVLHDCVSTASPGATGGALKCMMQAGFKPVHMTLFRFAFAIPTEDINWGILVNPQTCKRFINEHNNNDRQGLGLAILAERRKLKPGQQAILIYDQTGVDSYHDKQRFQLSLEAKNGTEGTIWKFDTLTELAARFEMDLDKLEATIAEYNANMAKDQDAFGKPRAVVGSAIAIGKAPYYAMYLNPRYNYSQGGALITPRAEALDVVSQQPIPGVFVCGEAAAGTFGYIRLTACSSLDSGVYGMIAGENAAKTEPWA
>LR134376.1|VEG97116.1|2912386_2914213_+|two-component-system-histidine-kinase
MGRFILCASLLWLSWLGPTPAKEWQANLRPVIRIGVIAFDQPGSEKARWQPTVDYLNRRLPQYQFLLVSGDVRSLNQLVASATLDFVISNGLKFLDYQRQHDAVRLLSLSPLRGTAEQAVGSTLIGRADAPPVGDWQALRHRRIVATSPEAFGGFQIMQGLWLRAGLHPEEAFPNLVFAGLPQEDLLRHLAEGRAEVAILPTCILEQAIAQGRYDANQFVVIMPQPQSVLPCQSSTPLYPTLSLAKMAHVNEGFARDLAKVLLEIPTDSAAARAGHYRHWTVPVKDAAVIALQQQLDAANAQPLVVQVWYQYRGWLLIALGGLLLLGGYHLRVKYLIQLRTRQLKESNARLTRALTDNRLAAERLNQQQSQLFSAQRVLLSGELAAGMAHELNQPLMALNNYLAGCRLRLAAVPPALADVEQGLDLALAQVSQAKGIIARLRDFMRKGEVQDRLISLDELLRGTLPLFHDQFVRQRISLHLPQGEPVHLWIDPTLMQQVLVNLLCNASEAVALNPDTQPPSIAIRQRIEANRVIISIHDNGTGMTEAQRAHLFVPFHTSKKEGLGLGLVICKRIIESYRGTIWAEAVPQGAVIAFSLPLQPLEEGEQE
>LR134376.1|VEG97117.1|2914209_2914860_+|transcriptional-regulatory-protein-FixJ
MKDNVYLVDDDPAVRASLGWLLEAVQIRLQGYDGARSFLAEVDLNQPGCLILDLCMPGMSGGELQEALNRLPNTLAIVFLTGEADVATTVSLFKQGAFDLLEKPVDSAVLLAAIGRACAHSRAAHERQLARQVLQARLERLSPREREIMGLVQEGMQNKQIADRLCIALRTAEIHRHNMMKKMGCTTPLQLVQLLTEAQFRYPARTAMALDIPTPV
>LR134376.1|VEG97118.1|2914918_2915680_-|3-deoxy-manno-octulosonate-cytidylyltransferase
MSFVVVIPARYASTRLPGKPLADIHGKPMVQHVVEKALQSGAERVIVAIDDERVRSALAPFAEQAGVELCMTSADHQSGTERLAEVCRHYGFTAETIVVNVQGDEPLIPPAIIRQVADNLAGASAPMATLSVPIVDAEEAFNPNAVKVVTDKDGYALYFSRASIPWDRDRFAQSQEQIGAHYQRHIGIYAYRAGFIQRYVDWAPSQLEQIEALEQLRVLWYGEKIHVAQALEAPPVGVDTQRDLDKVRALLAL
>LR134376.1|VEG97119.1|2915676_2915865_-|Trm112p-like-protein
MALDIKLLDIIACPVCKGKLHYDKAAHELICRFDRLAYPLEEGIPVLLENRARHLPLEELKP
>LR134376.1|VEG97120.1|2916075_2917062_-|tetraacyldisaccharide-4'-kinase
MLDRLWYGRSGWRWLLAPFALLFAIISGARRVAYRRGWLKSHRASLPVIVVGNLSVGGNGKTPVVVWLVEQLQARGLRPGVVSRGYGGKAPHYPYRLGAASTTAEAGDEPVLIARRCGCPVVVAPKRSDAVRLLEQSGEVDIIITDDGLQHYALARDLELVVVDGVRRFGNGCLLPMGPLREPMTRLKRVDAIICNGGTPARGEYAMQLVAGTPRRVRDDAPATEPLPPVIDALAGIGHPPRFFATLAALGYELRQSVGYADHQAFDPEELLARFDQRPLLMTEKDAVKCRAFAPDSWWYLPVSAELPASLLDSLLHSLKTARPGAGE
>LR134376.1|VEG97121.1|2917061_2918831_-|lipid-A-export-permease/ATP-binding-protein-MsbA
MQQETSQESWPVFKRLLGYVRDRKLGLVGGIIGMLGYAAVDTTFVYSIKPLIDQGLNGNDSTVLKWMPFFVLGIVALRGCAAFLSNYCMAWVGNHVVMRLQQQVFSHLMAMPMSFFDRQNTGNLLSKVTYDAGQVSSAASSTLVSLVREGATVVGLLGLMFWHSWQLSVIFLVVGPVVGVLIGLISRRFRKISRHIQQAVGDITTSTEQMLKGHKEVLMFGGQQVEDKRFFQVSNRMRQQTMKMVAADAIGSPIVQMVASVALAVFLYVATIDSVKATLTAGTFTVMVTSMMMLLKPLKSLTDVNNQFQRGITACQSLFGLLDSTPEEDTGTRTLERARGEIEFRNVTFTYPTKDTPALHNISFKVEAGKSVALVGRSGSGKSTIASLLTRFYDIEQGEILLDGVNIREYRLSELRKQYALVSQHVHLFNDSVANNIAYAAEDRYSQEEILQAARIAHADEFVSKMPQGYDTVVGENGASLSGGQRQRIAIARALLRDAPVLLLDEATSALDTESERHIQAAIDELCKARTSLVIAHRLSTIEKADEILVIDEGHIVERGNHAALMAQQGTYAQLRAIQFGNVSVGNKG

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Crispr_ID: LR134376_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_8

2954020-2954124

Orphan

Consensus_repeat	Method
ATGCCTTAGCCGTTGAACCGACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134376_8

>merge|LR134376|8|2954020-2954124|CRISPRCasFinder
ATGCCTTAGCCGTTGAACCGACCGGTAATCTGTTTATTGATGCTCATCTTGTTCATACCAATAACCCTTGTTGCACCAACCATGCCTTAGCCGTTGAACCGACCG

>LR134376|8|8|2954020-2954124|CRISPRCasFinder
ATGCCTTAGCCGTTGAACCGACCG	GTAATCTGTTTATTGATGCTCATCTTGTTCATACCAATAACCCTTGTTGCACCAACC
ATGCCTTAGCCGTTGAACCGACCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG97155.1\|2959231_2959771_-\|CMP/dCMP-deaminase-zinc-binding-protein	unknown	unknown	gnl\|CDD\|182786
LR134376.1\|VEG97153.1\|2955105_2956755_-\|transmembrane-component-of-the-phosphate-specific-transport-complex	unknown	unknown	gnl\|CDD\|227318
LR134376.1\|VEG97160.1\|2965183_2966215_-\|Uncharacterized-protein-conserved-in-bacteria-(DUF2066)	unknown	unknown	gnl\|CDD\|378267
LR134376.1\|VEG97159.1\|2964322_2965066_-\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|181224
LR134376.1\|VEG97157.1\|2961240_2962848_+\|malate-synthase	unknown	unknown	gnl\|CDD\|236432
LR134376.1\|VEG97152.1\|2954165_2954984_-\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184582
LR134376.1\|VEG97161.1\|2966365_2966992_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
LR134376.1\|VEG97146.1\|2947440_2948358_+\|C-5-sterol-desaturase	unknown	unknown	gnl\|CDD\|225546
LR134376.1\|VEG97147.1\|2948433_2949834_-\|arginine/ornithine-antiporter	unknown	unknown	gnl\|CDD\|129983
LR134376.1\|VEG97143.1\|2945046_2946033_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
LR134376.1\|VEG97148.1\|2949843_2950746_-\|Homocysteine-S-methyltransferase-family-protein	unknown	unknown	gnl\|CDD\|376828
LR134376.1\|VEG97151.1\|2953283_2953994_-\|transcriptional-regulator-PhoU	unknown	unknown	gnl\|CDD\|182974
LR134376.1\|VEG97156.1\|2960392_2960533_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG97158.1\|2962920_2964234_+\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
LR134376.1\|VEG97145.1\|2946913_2947375_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|378261
LR134376.1\|VEG97149.1\|2951084_2951621_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG97150.1\|2951759_2953091_-\|transporter	unknown	unknown	gnl\|CDD\|224173
LR134376.1\|VEG97142.1\|2944174_2944975_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270347
LR134376.1\|VEG97154.1\|2956788_2959026_-\|phosphate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226956
LR134376.1\|VEG97144.1\|2946087_2946837_+\|ABC-type-amino-acid-transporter	unknown	unknown	gnl\|CDD\|224051

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG97155.1\|2959231_2959771_-\|CMP/dCMP-deaminase-zinc-binding-protein	gnl\|CDD\|182786	PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional.	1.26419e-83
LR134376.1\|VEG97153.1\|2955105_2956755_-\|transmembrane-component-of-the-phosphate-specific-transport-complex	gnl\|CDD\|227318	COG4985, COG4985, ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism].	1.39565e-92
LR134376.1\|VEG97160.1\|2965183_2966215_-\|Uncharacterized-protein-conserved-in-bacteria-(DUF2066)	gnl\|CDD\|378267	pfam09839, DUF2066, Uncharacterized protein conserved in bacteria (DUF2066). This domain, found in various prokaryotic proteins, has no known function.	1.76073e-67
LR134376.1\|VEG97159.1\|2964322_2965066_-\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|181224	PRK08084, PRK08084, DnaA inactivator Hda.	1.02215e-111
LR134376.1\|VEG97157.1\|2961240_2962848_+\|malate-synthase	gnl\|CDD\|236432	PRK09255, PRK09255, malate synthase; Validated.	0
LR134376.1\|VEG97152.1\|2954165_2954984_-\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184582	PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional.	0
LR134376.1\|VEG97161.1\|2966365_2966992_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	4.61359e-133
LR134376.1\|VEG97146.1\|2947440_2948358_+\|C-5-sterol-desaturase	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	3.66985e-39
LR134376.1\|VEG97147.1\|2948433_2949834_-\|arginine/ornithine-antiporter	gnl\|CDD\|129983	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. [Transport and binding proteins, Amino acids, peptides and amines].	2.05803e-157
LR134376.1\|VEG97143.1\|2945046_2946033_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	6.91778e-89
LR134376.1\|VEG97148.1\|2949843_2950746_-\|Homocysteine-S-methyltransferase-family-protein	gnl\|CDD\|376828	pfam02574, S-methyl_trans, Homocysteine S-methyltransferase. This is a family of related homocysteine S-methyltransferases enzymes: 5-methyltetrahydrofolate--homocysteine S-methyltransferases also known EC:2.1.1.13; Betaine--homocysteine S-methyltransferase (vitamin B12 dependent), EC:2.1.1.5; and Homocysteine S-methyltransferase, EC:2.1.1.10,.	1.57309e-70
LR134376.1\|VEG97151.1\|2953283_2953994_-\|transcriptional-regulator-PhoU	gnl\|CDD\|182974	PRK11115, PRK11115, phosphate signaling complex protein PhoU.	7.56791e-161
LR134376.1\|VEG97158.1\|2962920_2964234_+\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
LR134376.1\|VEG97145.1\|2946913_2947375_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|378261	pfam09832, DUF2059, Uncharacterized protein conserved in bacteria (DUF2059). This domain, found in various prokaryotic proteins, has no known function.	9.66935e-14
LR134376.1\|VEG97150.1\|2951759_2953091_-\|transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	5.43748e-134
LR134376.1\|VEG97142.1\|2944174_2944975_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270347	cd13629, PBP2_Dsm1740, Amino acid-binding domain of the type 2 periplasmic binding fold superfamily. This subfamily includes the periplasmic binding protein type II (BPBII). This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBPII proteins share the same architecture as periplasmic binding proteins type I (PBPI), but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBPII proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	4.7497e-133
LR134376.1\|VEG97154.1\|2956788_2959026_-\|phosphate-ABC-transporter-permease	gnl\|CDD\|226956	COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
LR134376.1\|VEG97144.1\|2946087_2946837_+\|ABC-type-amino-acid-transporter	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.76834e-152

>LR134376.1|VEG97151.1|2953283_2953994_-|transcriptional-regulator-PhoU
MDNMNLNKHISGQFNAELENVRNQVLVMGGLVEQQLTDAISAIHIQDLDAARKIVANDHKVNAMEVAIDEECTRIIAKRQPTASDLRLVMAIIKTITDLERIGDVADKIARMLTDNANKPQPPLVSLENMGRRTIKMLHDVLDAFARMDLEAAIAVYKEDDKVDREYESIIRELMTYMMEDPRTIPQVLNVLWAARAIERVGDRCQHICEYIVYYVKGKDVRHTKADELSDLLGKH
>LR134376.1|VEG97150.1|2951759_2953091_-|transporter
MSFADSLFFLMLLVAGSVFFSLSEISLAASRKIKLQVMADEGNRHAEKVLALQAQPGNFFTVVQIGLNTVAILGGILGESALNPAIKTFITSFYQGPWLSQISSVVSFVVVTSLFILIADLMPKRLAMSMPERVAVVVVRPMLLCVTLLMPLVWFFNGMANALFRLLRVSMIRNDEITSDDIYAVMDAGAEAGVIQREEHQLIENVFELQSLGVTSAMTARESLIYFTLQEGEESIKAKIAEHPHNKFLVCDHNLDSIKGFVDAKELLIRVISGQSIDLNSGSLVQSVIIIPDTLNLYEAMEYFKNHRGDFAVVMNEYALVVGIVTMNDLMSTVMGEWATHAMEEQIVQRDENSWLVDGVTPISDVMRAFDIEEFPGNQNYETIAGFIMFMLRKIPKRTDSVKYAGYKFEVVDIDSYKIDQLLVTRVEPIASDKLAQESHPAV
>LR134376.1|VEG97149.1|2951084_2951621_-|Uncharacterised-protein
MPSYSRALACVALAIALGACSQSAPRKPAAAAKPATPQAAVVVPQPDPDAVVQSAVAEPSPVFDEEYQGPEQGSLESVTALFARGYIESAMRETMLAAVHSDYPLLGMRDVRLTDPVPKFLTSAQARTTAHDYLYAGVQRRLGRPLSPAQWEQIWQGLPQQGRVSDWVKQTKRVLAGR
>LR134376.1|VEG97148.1|2949843_2950746_-|Homocysteine-S-methyltransferase-family-protein
METQALWVLDGGMGRELARRGAPFRQPEWSALALMEAPQTVREVHQAYVASGARVITTNSYALVPFHIGAERFAAEGETLAALAGQLAREVADAHTDAVQVAGSLPPLFGSYRADLFEADRVSELAAPLIRALAPQVDIWLAETMSLIAEPLALKALLPADGKPFWVSFTLEDETPGREPLLRSGERVVDAVTALVGVGVDAILFNCCQPEVIEAALAVAGARLQALGRGDIRLGAYANAFPPQPKEATANDGLDEIRADLGPLDYLGWAERWRAVGASLIGGCCGIGPEHIQALASRLR
>LR134376.1|VEG97147.1|2948433_2949834_-|arginine/ornithine-antiporter
MKESKIGLWSLTALVFSSMVGAGIFSLPQNMAEVAGARAVLIGWGVTGVGILALAASFLYLSRLRPDLDGGIYSYARAGFGDLVGFFSAWGYWLCATIGVVGYLVIAFAALGSFVDTPEHIWFGEGNTLAAFIGESCILWAVHLLVARGVQQAALFNLVATLAKSLPLLLFILFACYWFDPMTFAADQGGSTLAVPVSEQVRNTMLITLWVFTGIEGAAVLSARARNRRDVGTATVLGVVLALLLYVLISVLALGILSRPELAALPNPSMAGLMAQMTGSWGKLLISVGLIVSVLASYVSWTLFSAEVPFSAARHGAFPAIFRRQNRNGTPIASLWLTSLTVQGCLLLVWLLGKGYTSLLLISTSMILVPYLLIGLFLLKLSFSGQGNGLMRAVALLSSGYGLWLLYAAGVEYLLLSLLLYGPGLLLFLYSRRQLAGAERLSGRERLLAGMTLVSLIPALWSFAHV
>LR134376.1|VEG97146.1|2947440_2948358_+|C-5-sterol-desaturase
MAVQYVNEILNSFGMLEPNWSNRMHHMDVQLLLLYLSPVFLAFIGWEMLYLRKHGAAFPTATYQWRDLFANGALALMHQGGDALAAIAIAYCYDALWGWRLLDIELNFWSILLLFLLQDLCYWLFHFASHHVRWLWASHVVHHSSERLNLSTAFRQSLMYPVSGMWLFWIPMILIGFPPEAVVATVLLSLGFQFFVHTQVVGKLGRLEWILNTPSHHRVHHASNAKYIDRNFAGVLIIWDRLFGTFVEEDPAEPCRFGITKPIRSFNPLTLTFHEWRDMLREARGLPWQKKLRVLFGKPAGPGSA
>LR134376.1|VEG97145.1|2946913_2947375_-|Uncharacterized-protein-conserved-in-bacteria
MQLVKRGVVIALLWSGCVWADPAQKLVDLLNSKQQVEQLQAQMQAQMIPLIIRGAGEHAQELAKHRDVLEAWFGRYLSWPAMSAEVAAIYRKHFTDAELKELIAFYQSPVGKKSLDTMPAIFQESSLVGKSLAERNMPALQTMLDEAKRQAAK
>LR134376.1|VEG97144.1|2946087_2946837_+|ABC-type-amino-acid-transporter
MTMRNKADPIIKATGVEKIYAGGVHALKNVSTQVAEGEVVVIVGPSGSGKSTFLRTLNQLETINDGDILIDGICLTEPGDVNKLREEVGMVFQSFNLFPHLNVLDNISLAPQKVRGLSRNDAQDRAKALLLKVGLANKAESYPSQLSGGQQQRVAIARALAMQPRIMLFDEPTSALDPEMVGEVLDVMKGLAREGMTMVVVTHEMGFAREVADRVLFMENGELLVDEKPTDFFDNPPSPRLRQFLSQVL
>LR134376.1|VEG97143.1|2945046_2946033_+|amino-acid-ABC-transporter-permease
MINPKSTRQMEKQPNQLLWHGIFLLLLLTAVFGIYKAVQSVDYTWRWERIPQYIAYQAEQKNYAEFDGTVVAGTTAAEKRQLFLQNDTDPGQRQPIAASGAQVAEGDTVFLGDTLDIELTWTAGPIAWGVWVTVKLSLVAGIFAILLGTLAGLARLSPNPALRNLAVTYVELIRGTPLLVQIFIVYFFIGTVLNLDRFTAGVAALAVFTGAYVAEIVRAGISSIHKGQMEAGRSLGLTSAQTMRYVILPQAFKRVLPPLAGQFINLIKDSSLVSVISITDLTKAGREVVSSTFSPFEVWFTVALLYLVLTGTLSFLVRRLEVKYARSN
>LR134376.1|VEG97142.1|2944174_2944975_+|amino-acid-ABC-transporter-substrate-binding-protein
MIKKLILSTLLLCGLANAAPSSAPSSTLDAVLERGVLRVGFDAGYQPFEMTNKQGQYIGFDVDLAKMVAKEMGVKVEFVNTAWDGIIPALLTDKFDVIMGGMTVTPQRNLRVNFADPYIVVGQTIVLRKDKAGEIKSFQDLNDPKYKIAVKLGTTGEQAVKRMIPKATLLQYETQDDAKLEVINGKVDAFIYDLPYNAIFASQNQGAVVHLDKPFTFEPLAWAIRKGDQDTLNWLNNYLRQIKGDGSYDRLYKKWFESNAWLNQLK
>LR134376.1|VEG97152.1|2954165_2954984_-|phosphate-ABC-transporter-ATP-binding-protein
MINVTPTSTQHTALDLLNLSPEQTALEVKDLNLYYGNKQALFNVNMKIPKGQVTAFIGPSGCGKSTLLRCINRMNDLVEICRIEGEIQLHGHNIYDKSVDVSALRRQVGMVFQRPNPFPKSIYENVVYGLRLQGINDRRTLDEAAERSLRGAALWDEVKDRLHDNAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLTIEELINELKSQFTVVIVTHNMQQAARVSDQTAFMYMGELIEYSNTNTIFTTPAKKKTEDYITGRYG
>LR134376.1|VEG97153.1|2955105_2956755_-|transmembrane-component-of-the-phosphate-specific-transport-complex
MGKWFKSGAPWIWMTGGAVSLSLVAVLGLLLLIGWRGLVYFWPHPIYEWQLEDASGNKSVLIGEINDRELVPVERLRSAGQALEGEEREQLTRYLVKTGNREFVDLDFRWVLETDIKSRTQPAELAMVERTTNGNFYGYIVGVKEDGRELSQDLHPALQRVLARANALSEQANDLQKGDIGSINYQLERLRLKERKAELEDELTEALKADLAAQRQALNDRYQVLEKELFSLRSEADRDAITVKDMRGELITMPMSKVLDVVWPNDMSLPAKVGHWFHQIGKFVSDDPREANTEGGVFPAIFGTVFMVLLMAVIVTPLGVVAAVYLHEYAGKNNLTKIIRIAVINLAGVPSIVYGVFGLGFFVYTLGGSLDQLFYPEALPSPTFGSPGVIWSALTLAILTLPVVIVSTEEGLARIPSTIRQGSLALGATQAETLWRIVLPMASPAIMTGLILAIARAAGEVAPLMLVGVVKLAPTLPMDGNFPYLHVERKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVTVIVGLNLTAIGIRNHLREKFRSLEH
>LR134376.1|VEG97154.1|2956788_2959026_-|phosphate-ABC-transporter-permease
MSSESINLVMAGSRKRRIKDKLAKYGVTTGGGLVLVALLLIFFYLLYVVKPIFNGASMEATSSFTLPVQGKTAWLGVEEQNEIGYRFSDQGQVSFFAVQHDGNLKVGQVLGQAQIAGKITTVATPAPGQKLIAYGFADGKAQVVQPYFKVSYPDDVRVIEPSLQYPFGEEPMVVDPQGKALKGMVFEATKDKMAAAAVTEDGRGVMTVLSGEENFLSGEVEWSSQNYAIPSLPRHVDQMLLTPNLRILFVREGNRLSIYDIHNLSDISLRDVMEINAPNANVTRVELLSGASSLLVGNDNGVISQWFEVTKDGKRQFAQIRDFKGDGPVDLLTPEHFRKGFISGAKDGTVSFFHATGESKLLSEKIEGGALAALAISPRHNLLLMQQENTFKLFDVENEHPEVTWSALWQEVWYEGYPEPMYVWQSTSASNDFEAKLSLVPLVFGTLKASFYAMLFAVPLGVAGAIYTAYFMSAGLRKYVKPTVEIMAALPTVILGFLAGLWLAPIIEGSLPGVILLLILLPMGMLLTALAWNYLPERGRSWLPDGWHAILLIPVLLLIGWGAFALSPLIENAFMHGDSRIWLTHEMGIKFDQRNSLVVGIAMGFAVIPTIFSIAEDAVFSVPKHLTQGSLALGATPWQTLSRVVILTASPGIFSAVMMGLGRAVGETMIVLMATGNTPIMDFSMFQGLRTLAANIAVEMPESEVGSSHYRVLFLAAFVLFVFTFMFNTLAEFIRQRLREKYSSL
>LR134376.1|VEG97155.1|2959231_2959771_-|CMP/dCMP-deaminase-zinc-binding-protein
MESAEKRAAEMQLTQDERWMQHAMALASKAEGIGEIPVGAVLVLGDEVIGEGWNRSISEHDACAHAEIMAIRAAGTRLANYRLLDTTLYVTLEPCCMCAGALIHSRVRRVVYGAQDLKTGAAGSVFEILQDSRHNHRVEIRGGVLADACSAQLSAFFKRRRAEQKAAKLAAKQASDAAS
>LR134376.1|VEG97156.1|2960392_2960533_+|Uncharacterised-protein
MTQAVELQPDQPLIPSPHPDIETTDAEPGNMVQLDVIDLAAPDDDY
>LR134376.1|VEG97157.1|2961240_2962848_+|malate-synthase
MSAPAQTISSTRLHIQGEMLPDYAQILTPDAVALVSELVERFAPQRNELLKQRVARQARIDGGELPDFLPETAHIREGSWTVRGIPADLQDRRVEITGPVERKMVINALNANVKVFMADFEDSLAPAWNKVIEGQINLRDAVNGTVSYQSPEGKSYSLKADPAVLICRVRGLHLPEKHVTFDGAPIPGGLFDFALYFLHNHQALLAKGSGPYFYLPKLQSHLEGRWWSEVFAWTEDKFGLPRGTIKATVLIETLPAVFEMDELLYQMKDHIVALNCGRWDYIFSYIKTLKDHGDRVLPDRQVVTMDKPFLSAYSRLLIKTCHQRGALAMGGMAAFIPAKDPLVNEQVFAKVKADKEREAHNGHDGTWVAHPGLADTAMAVFNAAIPAGARNQIGVLREQDAPITAADLLAPCEGERTEAGMRTNIRVALQYLEAWIGGNGCVPIYGLMEDAATAEISRTSIWQWIRHGKSLSNGKVVTKALFRQMLAEEQEVVKAELGDARWQAGRFAEASELMEQITCADTLIDFLTLPGYERL
>LR134376.1|VEG97158.1|2962920_2964234_+|isocitrate-lyase
MALTREQQIQAIEKDWAENPRWNGIKRGYSAEDVVNLRGSLQPVHTLAQRGADKLWELIHGGARKGYVNCLGALTGGQAVQQAKAGIEAIYLSGWQVAADNNLSSTMYPDQSLYPANSVPSVVERINNSFARADQIQWANKLGPQDAGFIDYFLPIVADAEAGFGGVLNAFELMKNMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTQEAVQKLVAARLAADVCGTTTLVIARTDANAADLLTTDADPYDAGFLTGERTAEGFYKVQAGIEQAISRGLAYAPYADMVWCETAKPDLDEARQFAEAIKAQYPDTILAYNCSPSFNWKKNLDDATIARFQQELSDMGYKYQFITLAGIHNMWFHMYELAYQYARGEGMKHYVEMVQEPEFAAASRGYTFVAHQQEVGTGYFDKVTTVIQGGQSSVTALTGSTEEDQFH
>LR134376.1|VEG97159.1|2964322_2965066_-|chromosomal-replication-initiator-protein-DnaA
MIHLGTNVTVKAQRVKQPAQLSLAVQLPDDETFVSFYPGNNAHLITALKNAAIGQGAPFLYFWGAKGSGRSHLLHATCAEVNARDAAAAYLSLDQFEQLDPSMLDALESLPLVCLDSLEAIAGNALWERALFDFYNRWKEKGEGTLVVTGCSAPRKLGLQLPDLASRLDWGVSFHLDELDDEGKLSALQLRAELRGFKLPIDVGRFLLNRLSRDMRTLLATLNQLDNASFRAKRKLTIPFVKEILEL
>LR134376.1|VEG97160.1|2965183_2966215_-|Uncharacterized-protein-conserved-in-bacteria-(DUF2066)
MLKRLVTLLCCSLSLMVSAAQVTDLYQGKAPTSGDMAAAQSQALGDVLIKVTGRRDILTQPAVVKALAAPGDFVQHYGYQDLGPVKFLKADFDVTKVNALIAQSKFPLLGPARPQMAIWLVVDEGERRILPDQSSDGWAAALRAQSQAMGLPVSIPLMDLDDNMAVNATDVWGRFADPILQASQRYGAEMVVLGKLTPEGDKEEGKWSIDWGLYGPKAGGELAELTKGAGSGTQAEVAQGMADALAGWLVQQYGTRLSGVASSQTLVVEGLSGIDGMIMVQKMLQGMASITKVTIGKLEGDKVTFNLSLQGDKAELVRGLQLESRLRQIEDNESGLRYQWAQP
>LR134376.1|VEG97161.1|2966365_2966992_-|uracil-phosphoribosyltransferase
MKVVEVKHPLVKHKIGLMREGDISTKRFRELAKEVGSLLTYEATSDFETEKVTIDGWNGPVEVDQIKGKKVTVVPILRAGLGMMDGVLEHMPSARVSVVGIYRDEETLQPVPYFEKIVSNIEERLALVIDPMLATGGSMIATIDLLKKKGCQSIKVLVLVAAPEGIKALEAAHPDVELYCASIDLGLNEKGYIVPGLGDAGDKIFGTK

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Crispr_ID: LR134376_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_9

3143721-3143812

Orphan

Consensus_repeat	Method
CGGGTGATGCACAGGGCCACCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134376_9

>merge|LR134376|9|3143721-3143812|CRISPRCasFinder
CGGGTGATGCACAGGGCCACCATCCTCGGGGACAAGCCCTACTGGCGGCCTTGAGCGAAAGAGATCCACCGGGTGATGCACAGGGCCGCCAT

>LR134376|9|9|3143721-3143812|CRISPRCasFinder
CGGGTGATGCACAGGGCCACCAT	CCTCGGGGACAAGCCCTACTGGCGGCCTTGAGCGAAAGAGATCCAC
CGGGTGATGCACAGGGCCGCCAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG97318.1\|3141994_3142819_+\|taurine-transporter-subunit	unknown	unknown	gnl\|CDD\|182276
LR134376.1\|VEG97310.1\|3124395_3128115_+\|Reverse-transcriptase-(RNA-dependent-DNA-polymerase)	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
LR134376.1\|VEG97316.1\|3140239_3141214_+\|taurine-ABC-transporter,-periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|183158
LR134376.1\|VEG97315.1\|3138846_3139950_+\|transporter	unknown	unknown	gnl\|CDD\|99750
LR134376.1\|VEG97324.1\|3147207_3147822_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|182628
LR134376.1\|VEG97325.1\|3147826_3149803_-\|ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
LR134376.1\|VEG97314.1\|3131519_3138644_+\|RTX-toxin-like-protein	unknown	unknown	gnl\|CDD\|273899
LR134376.1\|VEG97313.1\|3129473_3130685_-\|nucleoside-permease-NupC	unknown	unknown	gnl\|CDD\|224883
LR134376.1\|VEG97327.1\|3151385_3151829_-\|alkylhydroperoxidase	unknown	unknown	gnl\|CDD\|225039
LR134376.1\|VEG97321.1\|3144333_3145695_-\|inner-membrane-transport-protein-YajR	unknown	unknown	gnl\|CDD\|341025
LR134376.1\|VEG97328.1\|3151950_3152868_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
LR134376.1\|VEG97311.1\|3128340_3128559_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG97320.1\|3143889_3144258_-\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|377795
LR134376.1\|VEG97326.1\|3149806_3150826_-\|cytochrome-o-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|182518
LR134376.1\|VEG97317.1\|3141230_3141998_+\|taurine-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|183056
LR134376.1\|VEG97322.1\|3145970_3146861_-\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|184001
LR134376.1\|VEG97312.1\|3129006_3129249_+\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|371696
LR134376.1\|VEG97309.1\|3122774_3123581_+\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
LR134376.1\|VEG97329.1\|3152979_3153312_-\|Protein-of-uncharacterised-function-(DUF3634)	unknown	unknown	gnl\|CDD\|315081
LR134376.1\|VEG97323.1\|3146874_3147207_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|182568

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG97318.1\|3141994_3142819_+\|taurine-transporter-subunit	gnl\|CDD\|182276	PRK10160, PRK10160, taurine ABC transporter permease TauC.	4.39402e-150
LR134376.1\|VEG97310.1\|3124395_3128115_+\|Reverse-transcriptase-(RNA-dependent-DNA-polymerase)	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	2.64534e-20
LR134376.1\|VEG97316.1\|3140239_3141214_+\|taurine-ABC-transporter,-periplasmic-binding-protein	gnl\|CDD\|183158	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional.	5.85773e-177
LR134376.1\|VEG97315.1\|3138846_3139950_+\|transporter	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	3.29055e-30
LR134376.1\|VEG97324.1\|3147207_3147822_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|182628	PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III; Provisional.	4.22347e-132
LR134376.1\|VEG97325.1\|3147826_3149803_-\|ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
LR134376.1\|VEG97314.1\|3131519_3138644_+\|RTX-toxin-like-protein	gnl\|CDD\|273899	TIGR01965, VCBS_repeat, VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.	2.07576e-27
LR134376.1\|VEG97313.1\|3129473_3130685_-\|nucleoside-permease-NupC	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	1.95416e-170
LR134376.1\|VEG97321.1\|3144333_3145695_-\|inner-membrane-transport-protein-YajR	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.15323e-155
LR134376.1\|VEG97328.1\|3151950_3152868_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.29455e-76
LR134376.1\|VEG97326.1\|3149806_3150826_-\|cytochrome-o-ubiquinol-oxidase-subunit-II	gnl\|CDD\|182518	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional.	0
LR134376.1\|VEG97320.1\|3143889_3144258_-\|Uncharacterized-conserved-protein	gnl\|CDD\|377795	pfam07237, DUF1428, Protein of unknown function (DUF1428). This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown. The structure of this family shows it to be part of the Dimeric-alpha-beta-barrel superfamily. Many members are annotated as being RNA signal recognition particle 4.5S RNA, but this could not be verified.	5.33043e-55
LR134376.1\|VEG97327.1\|3151385_3151829_-\|alkylhydroperoxidase	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.47338e-21
LR134376.1\|VEG97317.1\|3141230_3141998_+\|taurine-transporter-ATP-binding-subunit	gnl\|CDD\|183056	PRK11248, tauB, taurine ABC transporter ATP-binding subunit.	3.56308e-162
LR134376.1\|VEG97322.1\|3145970_3146861_-\|protoheme-IX-farnesyltransferase	gnl\|CDD\|184001	PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.	1.30706e-139
LR134376.1\|VEG97312.1\|3129006_3129249_+\|glutathione-peroxidase	gnl\|CDD\|371696	pfam11730, DUF3297, Protein of unknown function (DUF3297). This family is expressed in Proteobacteria and Actinobacteria. The function is not known.	2.03977e-46
LR134376.1\|VEG97309.1\|3122774_3123581_+\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	4.6889e-123
LR134376.1\|VEG97329.1\|3152979_3153312_-\|Protein-of-uncharacterised-function-(DUF3634)	gnl\|CDD\|315081	pfam12321, DUF3634, Protein of unknown function (DUF3634). This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.	6.828e-21
LR134376.1\|VEG97323.1\|3146874_3147207_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|182568	PRK10582, PRK10582, cytochrome o ubiquinol oxidase subunit IV; Provisional.	3.65754e-53

>LR134376.1|VEG97318.1|3141994_3142819_+|taurine-transporter-subunit
MSIALVRSTAAGRVLRWPLPRRLSLSLATLLALLALWWLVARLGWVDPLFLPPPGRVLAQLVTLAGPQGFMDATLWQHLGASLQRILIALLAAAVFGISAGLAMGLSPTVRGMLDPLIELYRPVPPLAYLPLMVIWFGIGETSKVLLIYLAIFAPVAMATLAGVQSAQQVRLRAARSLGASRLQVLWHVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGVGFMVQSAGEFLATDVVLAGILVIALVAFVLELGLRALQRRLTPWHGEGQ
>LR134376.1|VEG97317.1|3141230_3141998_+|taurine-transporter-ATP-binding-subunit
MLQLAYVSAEYAGKKVLDNISLSLAEGELMVVLGPSGCGKTTLLNLIAGFEPCQNGQISLQGKPVRGPGAERGVVFQSEGLLPWRNVQDNVALGLQLAGVPRAERSEQALTLLRKVGLEGAAERPIWQLSGGQRQRVGIARALATRPQLLLLDEPFGALDAFTREQMQTLLLRLWHEGRRQVLLITHDIEEAVFLASELVLLSPSPGRVVERLSLDFGRRFAAGEPCRSIKSDPAFIERREYVLSRVFNEREAFA
>LR134376.1|VEG97316.1|3140239_3141214_+|taurine-ABC-transporter,-periplasmic-binding-protein
MTGKGTSLWLAALALVVQSAQAVEVTVAYQTSAEPAKVAQADNSFAKESGAKVDWRKFDSGASVVRALASGDVQIGNIGSSPLAVAASQNVPIEVFLLASKLGDSEALVVKKGLSTPQDLVGKRIAVPYSSTTHYSLLAALKHWGVDPTKLEIVNLQPPAIIAAWQRGDIDGAYVWAPALNKLTKEGSVLTDSAQVGSWGAPTLDVWVVRKDFAKAHPEVVQAFVKSNLAAQQAYLDNPADWLAQPANLDKLASLSGVSVAEVPDLVRGNTYLGAREQSAQLGSLVNQTIVDTARFLETQGKVPSAAPDYSQFVTDRFVKPLAQ
>LR134376.1|VEG97315.1|3138846_3139950_+|transporter
MKQTLLSLTLASLLALPAFLPSIAWAAPVRSLQKEQNYDQYISKRQVVDQLLADAWQIFKSPARVSTAGFTAKMPSNMERVTELLLQAYQLEPYRTDLLISAANAQIYNGNVERAINLFEQALTTAPDDLDLNSYLATWQRFKGDQAKSDTYLKRVSELNGGRAADLQRLFDTVDRVNATPLKEQGERSPKPGNRAIVTLGYALNPDGSMHDILLGRLETTRSLAQANPAALIILTGGVPQNRQTEGKLMADWLVKKGIDRSRIIEENYATSTVENALYSGYALARHQIQYATLVSSASHVRRGQTLLEIACWQSGPAGIQIDSVSYPDQPLSTLAKVSDGELLGIYRDALRTYGLWSYRSAPLIER
>LR134376.1|VEG97314.1|3131519_3138644_+|RTX-toxin-like-protein
MFRILLDQPMEITHAQGESWVVLKDGSIKTVQVGDLIPKGVLLVSKSEVELTPPAPVSDAPDKAQAAISFDTEPLSPEEQQELAELQQAILDGKDPTEVAQATASGGDASGIAAGSGNAGAIVTERTNQATISNAGFDTAHDAPEFIRYRDILGELTAEEAEHDPIAFDQSHIISEDAPTLYAQVPAAQDPDHDGINPQGYSLVTDVDRGQLILNADGSYIYTPSAEFQSLKEGETQQVSFTYIATDPNGNQSAPATVTITITGTNDDASIGVATPGADQGAVKEDVTLTTGGKLVATDVDQGEAHFQPQDQVKGAHGTFSLDADGNWTYNLDNNDPAVQALKEGETLPSEHFVVKSADGSAEHSVTVTITGTNDVASIGVATPGADQGAVKEDVTLSTGGKLVATDVDQGEARFQPQDQVKGAHGTFSLDADGNWTYNLDNNDPAVQALKEGETLPSEHFVVKSADGSAEHSVTVTITGTNDDASIGVATPGADQGAVKEDVTLSTGGKLVATDVDQGEARFQPQDQVKGAHGTFSLDADGNWTYNLDNNDPAVQALKEGETLPSEHFVVKSADGSAEHSVTVTITGTNDDASIGVATPGADQGAVKEDVTLSTGGKLVATDVDQGEARFQPQDQVKGAHGTFSLDADGNWTYNLDNNDPAVQALKEGETLPSEHFVVKSADGSAEHSVTVTITGTNDDASIGVATPGADQGAVKEDVTLTTGGKLVATDVDQGEARFQPQDQVKGAHGTFSLDADGNWTYNLDNNDPAVQALKEGETLPSEHFVVKSADGSAEHSVTVTITGTNDDASIGVATPGADQGAVKEDVTLSTGGKLVATDVDQGEARFQPQDQVKGAHGTFSLDADGNWTYNLDNNDPAVQALKEGETLPSEHFVVKSADGSAEHSVTVTITGTNDDASIGVATPGADQGAVKEDVTLSTGGKLVATDVDQGEARFQPQDQVKGAHGTFSLDADGNWTYNLDNNDPAVQALKEGETLPSEHFVVKSADGSAEHSVTVTITGTNDDASIGVATPGADQGAVKEDVTLTTGGKLVATDVDQGEARFQPQDQVKGAHGTFSLDADGNWTYNLDNNDPAVQALKEGETLPSEHFVVKSADGSAEHGVTVTITGTNDDASIGVATPGADQGAVKEDVTLTTGGKLVATDVDQGEARFQPQDQVKGAHGTFSLDADGNWTYNLDNNDPAVQALKEGETLPSEHFVVKSADGSAEHGVTVTITGTNDDASIGVATPGADQGAVKEDVTLTTGGKLVATDVDQGEARFQPQDQVKGAHGTFSLDADGNWTYNLDNNDPAVQALKEGETLPSEHFVVKSADGSAEHGVTVTITGTNDDASIGVATPGTDQGAVKEDVTLTTGGKLVATDVDQGEARFQPQDQVKGAHGTFSLDADGNWTYNLDNNDPAVQALKEGETLPSEHFVVKSADGSAEHSVTVTITGTNEAPDARDDGASTQQTVTLDGQNWDTSGDIKVDYYVIDATTGLKIANAEQSDYTGDGDHRYGVKSDIEQPNADAVQAGQLGYLDSENKSEAMRFTFQQGQVADHASIEIKNLWSDRFNGGWEPGCERGVWKAFYKGELIATGVFEGTSGGKQTLQIEAGGRYFDTIEMSAIGYKDGIVDPQGSEYFITKVTADLTHFDQAFQTNETGSLDLDVLKNDTDPNQDAIAIVEGSYPDYITLVNGKLHFDAAKYLQTLPAGQRDLQPGEVKSIEFEYSIRDIHGATDQAKVTITIIGDPLSGTAPLHVEMQEGDLAGGATAHSEGLLPGAHEATPHDYRFATQQSGAEVHSGGNPLSYEVSQDGLQLTGFIMEGGQKVNVLVAQLDPQQGSYQLDLFRPLDHGLPGKDLLSLPFDMNIQVGNQLTQGKLIVDIIDSAPTPGTISHAVGDVEPQSNSVIIALDMSGSMKDYVHDANGQWTTRWSISQQAIKAMFEQYDKAGEVQFKIATHAGYPDGQVSGWLHSLADIQAFFDTIVPSGWTPYYQALNQLDAILSNPQDQVAMEGTNKQFYFLSDGAPSDFGYWTNGSYKSQEIRDRLMSGISPDEVGGEQHYQELLKGTVSPTKAEQFLILGESMDHIMDKHGNPFDSMNMLAIGQSSSLEYLTPLAGQDGTAILVEKDADVVNILTESVPGQLQGDVTLQSIEGEWVQSLTHDDRTYFYDQTKGGIFIHDSATDNKVVDGAKLTLDTTNGKLVLNFETGQYDYQAKDVHGNGQDKFLLTLRDGDGDTADTALVIDVTDLQGGVSASPLTLGTAEKPAAFALSAPLLGSEAQDELIELPVSQPAAPASHLESLTANGIAIGDLLDHDEMDSLLTQVAPATQDSPGIAGEGAAMSALPDGNVPDLLSHTMPNPVFDELLSQQQFIQ
>LR134376.1|VEG97313.1|3129473_3130685_-|nucleoside-permease-NupC
MTLLLSLVGMLALMFIAWLASENRRAIRWRTVLGALALQISLAALVLYFPPGQLLLGAMSNGVSALLGFADSGIRFVFGDLASNGFIFAVRVLPLVIFISALIAVLYHFGIMQWVIRVLGGGIHRLLGTSRAESLVATGNIFLSQGESPLLIRPFLAGMTRSELFAVMTCGMASVAGSVLGGYAGLGVDLKYLIAASFMAAPGGLLMAKLLVPEQERVREQDEITLDKSDYSNAIDALAGGAMGGMKIAVAIGTILLVFVSVITMINAGFATVGGWFGWADLSLQLLLGYLFAPVAWLIGVPSDEMMAAGSLIGQKVIMNEFVAYLDFASIKENLSAHSQIIITFALCGFANLGSIAIQLGSIGTMAPERRQDVARMGLKAVLAATLANLMSATLAGIFVSLG
>LR134376.1|VEG97312.1|3129006_3129249_+|glutathione-peroxidase
MSDNKPALPDHLAANPRSPHHVAECFEHEIGIRLNGKERTNVEEYCISEGWVKIPSPKAKDRYGNPMLITVKGTVEAFYA
>LR134376.1|VEG97311.1|3128340_3128559_+|Uncharacterised-protein
MYDKYVWYVSRMLFCFERVIDVKDSLKDKSWSKTITKHLNFHSEHFKKTKAVDEKLYCEPILDLIQLSQKTD
>LR134376.1|VEG97310.1|3124395_3128115_+|Reverse-transcriptase-(RNA-dependent-DNA-polymerase)
MKQLDRKYYNLKPIHSNLYDHYILGLAWKKSDGFVRNYNWYADLLSLDKYTLIIDSAIKSWSNKISNGHFTSVKLNLIPAPKSAKWTIKNGEWTLNDSERTLRPLADISIRDQTIATTVLMCLADALESRQKNCSLSEQDYSEHIKNKVVSYGNRLLCDWEGEVARFRWGGSEFYRKYSSDYRSFLQRPISIGRKIREQVSTADEVYIIHLDLKNFYGSIKLELLIKKLEEIVTTHYKDLEDEAYVYDDVFWKKTLDLFQWSWTDESKKISDELNFSGPIGLPQGLASSGALSNAYLIRFDEKIINNLRQKINDSEIYIHDYCRYVDDLRFVVSGVSLTKEYIKSTIKDFIQHVLDEDLEQSPKDASNKLPYLEVNSQKTQIFELSALDNWSSLTNRVNEIQSEIGSSCIAERHTLDLNIPALQQLLQIDHNDTLQNIEQVFPDLNLGSVIKVDSLHRFSAHRLSSALMSKSKLISPNENFILENEASVVSNKLISTWLKDPSNMVLFRKAIEIHPSTPAYENILEFILNKAINSADIKEVYIMTYLLSDIFRSVTDIYIKLNTFQLNDYNPLFSKTTIAAQKLLSCKSDLPSYIYKQALFYLAVIKKPFISIKRRDKNIAKLHKVIMRQQFNQLRLFDGYLFEIAAQITGDYKANASFLLLHESSSSVLNKILDSYAFRGGKFWNAIWNELLNNNNEELIAKYRWASPKINLSPNGNSHYLSTIAAFKDNPFKHEHSLLKLGLALIDVVEREKSKFWRKDGYQLSPHELRVEIQSGKSWCDLWKIDTELTCIPDPKEMSLSSYDPRYETPEWLANDNEGYQYERKIYWICSILRGAALGNIDFTQRNNLSYEDDRYSGIRTQWLKRRMGMLQSPESIVGSFGTISDWFTHLLQHGLQWPGFSSSYIEEKEILSISSLNDFKICLKERLDALNSRVCVASNVPTLPTVINRPELSANLFRVVTVQQLFPKEIHFHRSDVTLDNKDVRWKHREHLAEVCKLTEQTLRAKLRVEQKNYKSTADLIVFSELAVHPDDEDIIRGLALRTKSIVFAGFVFSEHNGKVINKARWIIPDKAEFGMQWRVRDQGKLHMTPGEKSLNIEGYRPCQHVIEIEGSPEGPFKITGAICYDATDIKLAADLRDQTDMFVISAYNKDVNTFDNMASALQWHMYQHIIIANTGEYGGSTMQAPYKEKHHKLISHAHGTGQIAISTADIDLAAFRRKVIEYKKTKAEPAGFNRKH
>LR134376.1|VEG97309.1|3122774_3123581_+|tryptophan-synthase-subunit-alpha
MNRYAQLFSRLDAVNQGAFVPFVMLGDPTPELSLAIVDALVEGGADALELGIPFSDPVADGPTIQGAALRAFASHTTPDGCFELLTRVRAKYPQIPIGLLVYANLVYVRHIDGFYEKCQQAGVDSVLVADVPVQMCEPYKAAADRFGIDSIFIAPPNGDTETLKAVAELGSGYTYLVSRAGVTGAETKAGMPVDGLINTLREFKAPPALLGFGISEPAQVRDAIKAGAAGAISGSAVVKIIETHHQNPEHMLTRLKEFVEGMKAATNR
>LR134376.1|VEG97320.1|3143889_3144258_-|Uncharacterized-conserved-protein
MSYIDGFVLAVPTASKQALIDHARQIDPIFLEYGATRVLEGWGDDVPHGKLTDFYRAVAAKEDESVVFSWVEWPDKATRDEAMAKIMKDARMDPSNPANLAMPFDGARMIFGGFSPVLDLRG
>LR134376.1|VEG97321.1|3144333_3145695_-|inner-membrane-transport-protein-YajR
MNDFTMTRGERRATWALGSVFSLRMLGMFMVLPVLTTYGMSLAGASEALIGLAIGIYGMTQALFQIPFGLLSDRIGRKPLIVGGLLMFALGAVIAALSDSILGVIVGRALQGSGAISAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVTGPLITHALGLSGLFWLIALLALGGIGITLWWVPTPTSHLRNRESALVKGGIRTVLTNPRLLKLNLGILCVHTLLMSSFVALPPLLEQAGLPRDSQWQAYLVTMLVAFVSVVPFIIYAEKRRQMKRVFQACVLVMLIAEVVLWQAGLQLWGLLAGLQLFFIGFNVMEALLPSLISKESPPGYKGTAMGVYSTSQFIGVAIGGSLGGLFYSLGGAPLVFGSCAVLALLWLGISLTMQEPPYVSSLRIVLPEGVAATPALEQKIRACEGVSDVLLVEAERSLYVKVDTKHLTRSDLERLVAI
>LR134376.1|VEG97322.1|3145970_3146861_-|protoheme-IX-farnesyltransferase
MMKQYLQVTKPGIIFGNLISVIGGFLLASKGSLDVPLFILTMAGVSLVVASGCVFNNYIDRDIDCIMERTKNRALVKGLIAPGVSLWYASALGVAGIALLYFAANPLAALLAVLGFLVYVGVYSLYMKRHSVYGTLVGSLSGAAPPVIGYCAVSNEFDSGALILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKHHITLYILAFMVPTLMLFLGGYAGYKYLIVATAVSVWWLGMALSGYKQAVDDSLWARKLFMFSIVTITCLSVMMSVDFQPDATPVLVSMLP
>LR134376.1|VEG97323.1|3146874_3147207_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MSSHAVDNHGASHGSAKSYLIGFVLSVILTAIPFWMVMDGSASHAMVLGTVVAMAVVQIFVHLAYFLHMNTSSEERWNLVALVFTVLIIAIVVVGSLWIMYNLNVNMMVH
>LR134376.1|VEG97324.1|3147207_3147822_-|cytochrome-o-ubiquinol-oxidase-subunit-III
MATDVLHHTHGAHDDHGHHDAGATKVFGFWIYLMSDCILFATLFATYAVLVNGTAGGPSGKDIFELPFVFAETMLLLFSSITFGFGMLAMNKNKVAAVNGWLLVTFLLGAGFIAMEIYEFHHLIAEGFGPQRSGFLSAFFTLVGTHGIHVTSGLIWIIVMMVLVAKKGLTERNRTRLMCLSLFWHFLDVVWICVFTVVYLMGAM
>LR134376.1|VEG97325.1|3147826_3149803_-|ubiquinol-oxidase-subunit-I
MFGKLTLDAIPYHEPIIMVTIAGIILGGLAIAGLITYFGKWEYLWKEWFTSVDHKRLGIMYLILGMVMLLRGFADAVMMRTQQVMASAGGEGILPPHHYDQIFTAHGVIMIFFVAMPLVIGLMNIVVPLQIGARDVAFPFLNNLSFWFTAAAVVLINVSLAVGEFAQTGWLAYPPLSGVDFSPGVGVDYWIWSLQISGLGTLLTGVNFFATIIRMRAPGMTMMRLPVFTWTALCANILIIASFPILTVTIALLTADRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILVLPVFGIFSEIVATFCKKKLFGYTSLVWATVAITVLSFVVWLHHFFTMGSGANVNAFFGITTMIISIPTGVKIFNWLFTMYRGRIEFSSPMLWTVGFIITFTVGGMTGVLLSVPAANFVLHNSLFLIAHFHNVIIGGVVFGCFAGITYWFPKAFGFKLDDVWGKRAFWFWITGFFVAFMPLYVLGFMGMTRRVSQNIDPEFHGWLVVAACGAGLIAIGVLCQVIQVVVSIRDREKNRDWTGDPWGGRTLEWATSSPPPFYNFAIEPKVKGLDAFWEAKEDGSAFLQPARYAPIHMPKNSGAGVVIAALSVVFGFAMIWHIWWMAIAGFVGMIATWIIHSFNEDVDYYVQVDEIERIEGQHFDNINKVA
>LR134376.1|VEG97326.1|3149806_3150826_-|cytochrome-o-ubiquinol-oxidase-subunit-II
MRPFEVKRGLGALLLIATAGLLSGCDMALMSPKGQVGLEQKSLILTALGLMLIVVIPVIIMTVAFARKYRASNTTAKYTPDWSHSNKIEAVVWTVPVIIVAILAVITWKTSHSLDPYKPLESDVKPIQVDVISLDWKWLFVYPELGIASVNELAFPVNTPVNFRVTSDTVMNSFFIPQLGGQIYAMAGMQTKLHLIANEAGQYKGISGSYSGAGFSGMKFKAIATTDQAGFDAWVAKVKQSPKMLNTMGEFDVLAKKSENHPVEYFASADPKLFVNVINKFMGDMKPGEHKGMQHEAAAKHDDGMDMADMDHGDMTSAEHAGHMAMPMDDKSVKAGSEE
>LR134376.1|VEG97327.1|3151385_3151829_-|alkylhydroperoxidase
MSDRIQLAQQIPAAIQAMMGLESYLGGTEIPSRLKELIKLRASMINGCAYCIQMHAEVAMKQQESPQRLLALSAWRESPLFDERERAVLALTDEVTLIAGQGLSEEVYRQGLALLGETLLAQCLMQIVTINAWNRIAVATRMEHPLS
>LR134376.1|VEG97328.1|3151950_3152868_+|LysR-family-transcriptional-regulator
MLDRIRILAQVVESGSFSRAARALNLAPSSVTRTIDSLEQQLGVPLFKRSTRQLVLTEQGEYFLARSVRLLEEAEQLVQSLQPLHVAPRGPLRVSVFESFGAAWLAPRLPAFLARYPGVRVEIEFDNRLVDLNADNVDVAIRIGRPTDSSLHARHLLANRTLLVASPAYLAQHGEPVHPDELASHNCLIRGQGRQRQHWFFRRGAERRKVAVQGNLASVGGTPLLCAAQAGCGLLLLSSWMVQQGIDDGSLRQLLPDWQASPYEDRHDEIFAVFRGGRFLKPQTRAFIDFLIEVMAPLQGSDGKA
>LR134376.1|VEG97329.1|3152979_3153312_-|Protein-of-uncharacterised-function-(DUF3634)
MAWLSLLVAIALIWWLMKLGRGALFEIRLQPGKVQLKRGAVSPRFLAQAKQILQQDPVRGRILGQRDDNGVRLVFSRSIPEPVAQRLRNIFPYGDYRTPPAVPDGRKPHK

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Crispr_ID: LR134376_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_10

3382045-3382143

Orphan

Consensus_repeat	Method
CCCCTGCCGCCGTGCCTGCCAGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134376_10

>merge|LR134376|10|3382045-3382143|CRISPRCasFinder
CCCCTGCCGCCGTGCCTGCCAGGTCGCGATGGTGAGCAGGAAAACCAAACTCGACGGCTCGCGTCGCCACCCTCACCCCTGCCGCCGCGCCTGCCAGGT

>LR134376|10|10|3382045-3382143|CRISPRCasFinder
CCCCTGCCGCCGTGCCTGCCAGGT	CGCGATGGTGAGCAGGAAAACCAAACTCGACGGCTCGCGTCGCCACCCTCA
CCCCTGCCGCCGCGCCTGCCAGGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG97508.1\|3370538_3371396_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
LR134376.1\|VEG97521.1\|3384039_3385134_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
LR134376.1\|VEG97519.1\|3382813_3383029_+\|Protein-of-uncharacterised-function-(DUF1107)	unknown	unknown	gnl\|CDD\|368954
LR134376.1\|VEG97517.1\|3381499_3381973_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
LR134376.1\|VEG97527.1\|3389327_3390209_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
LR134376.1\|VEG97512.1\|3374664_3376062_+\|xanthine-permease	unknown	unknown	gnl\|CDD\|274468
LR134376.1\|VEG97515.1\|3379004_3380327_+\|ornithine-decarboxylase	unknown	unknown	gnl\|CDD\|143482
LR134376.1\|VEG97526.1\|3389229_3389331_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG97514.1\|3377083_3378454_-\|amino-acid-carrier-protein	unknown	unknown	gnl\|CDD\|224040
LR134376.1\|VEG97509.1\|3371516_3372896_+\|mate-efflux-family-protein	unknown	unknown	gnl\|CDD\|240539
LR134376.1\|VEG97523.1\|3386399_3387419_-\|glutamine/glutamate-ABC-transporter-periplasmic-glutamine/glutamate-binding-protein	unknown	unknown	gnl\|CDD\|270410
LR134376.1\|VEG97516.1\|3380406_3381375_-\|K+-dependent-Na+/Ca+-exchanger-like-protein	unknown	unknown	gnl\|CDD\|182684
LR134376.1\|VEG97525.1\|3388219_3389233_-\|ABC-type-transporter-permease	unknown	unknown	gnl\|CDD\|223912
LR134376.1\|VEG97510.1\|3373009_3373258_+\|protein-YciN	unknown	unknown	gnl\|CDD\|182919
LR134376.1\|VEG97520.1\|3383124_3383868_-\|ABC-type-amino-acid-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
LR134376.1\|VEG97522.1\|3385143_3386331_-\|ABC-type-amino-acid-transporter-permease	unknown	unknown	gnl\|CDD\|226960
LR134376.1\|VEG97524.1\|3387920_3388223_-\|Protein-of-uncharacterised-function-(DUF2845)	unknown	unknown	gnl\|CDD\|371338
LR134376.1\|VEG97528.1\|3390326_3390938_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase-FklB	unknown	unknown	gnl\|CDD\|183207
LR134376.1\|VEG97513.1\|3376161_3376875_+\|protein-ligase	unknown	unknown	gnl\|CDD\|319742
LR134376.1\|VEG97511.1\|3373288_3374419_-\|response-regulator-PleD-(Stalked-cell-differentiation-controllingprotein)	unknown	unknown	gnl\|CDD\|143635

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG97508.1\|3370538_3371396_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.11224e-29
LR134376.1\|VEG97521.1\|3384039_3385134_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.41866e-65
LR134376.1\|VEG97519.1\|3382813_3383029_+\|Protein-of-uncharacterised-function-(DUF1107)	gnl\|CDD\|368954	pfam06526, DUF1107, Protein of unknown function (DUF1107). This family consists of several short, hypothetical bacterial proteins of unknown function.	3.00831e-19
LR134376.1\|VEG97517.1\|3381499_3381973_-\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	5.62333e-69
LR134376.1\|VEG97527.1\|3389327_3390209_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.74797e-91
LR134376.1\|VEG97512.1\|3374664_3376062_+\|xanthine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	2.85877e-147
LR134376.1\|VEG97515.1\|3379004_3380327_+\|ornithine-decarboxylase	gnl\|CDD\|143482	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein.	4.31153e-157
LR134376.1\|VEG97514.1\|3377083_3378454_-\|amino-acid-carrier-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
LR134376.1\|VEG97509.1\|3371516_3372896_+\|mate-efflux-family-protein	gnl\|CDD\|240539	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.16748e-98
LR134376.1\|VEG97523.1\|3386399_3387419_-\|glutamine/glutamate-ABC-transporter-periplasmic-glutamine/glutamate-binding-protein	gnl\|CDD\|270410	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold. BztA is the periplamic-binding protein component of ABC transporter specific for carboxylic amino acids, glutamine and asparagine. The BZtA domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.63218e-134
LR134376.1\|VEG97516.1\|3380406_3381375_-\|K+-dependent-Na+/Ca+-exchanger-like-protein	gnl\|CDD\|182684	PRK10734, PRK10734, putative calcium/sodium:proton antiporter; Provisional.	3.74243e-79
LR134376.1\|VEG97525.1\|3388219_3389233_-\|ABC-type-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.60284e-25
LR134376.1\|VEG97510.1\|3373009_3373258_+\|protein-YciN	gnl\|CDD\|182919	PRK11037, PRK11037, hypothetical protein; Provisional.	4.31858e-45
LR134376.1\|VEG97520.1\|3383124_3383868_-\|ABC-type-amino-acid-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.82293e-161
LR134376.1\|VEG97522.1\|3385143_3386331_-\|ABC-type-amino-acid-transporter-permease	gnl\|CDD\|226960	COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	0
LR134376.1\|VEG97524.1\|3387920_3388223_-\|Protein-of-uncharacterised-function-(DUF2845)	gnl\|CDD\|371338	pfam11006, DUF2845, Protein of unknown function (DUF2845). This bacterial family of proteins has no known function.	7.17965e-30
LR134376.1\|VEG97528.1\|3390326_3390938_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase-FklB	gnl\|CDD\|183207	PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional.	2.41682e-82
LR134376.1\|VEG97513.1\|3376161_3376875_+\|protein-ligase	gnl\|CDD\|319742	cd16443, LplA, lipoate-protein ligase. Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.	1.96405e-30
LR134376.1\|VEG97511.1\|3373288_3374419_-\|response-regulator-PleD-(Stalked-cell-differentiation-controllingprotein)	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.37848e-59

>LR134376.1|VEG97517.1|3381499_3381973_-|peroxiredoxin
MITVGQSLPAGEFTFLTAEGKQVQDSQALFAGKRVVLFAVPGAFTPTCSNAHLPGYVVLADEFKAKGIDAIYCLSVNDAFVMRAWQEAQNAEAITMLADGDGSWTQALGLAKETGAFGGLRAQRFALIAQDGVVQQLFVEAPGKFEVSDAESLLAAL
>LR134376.1|VEG97516.1|3380406_3381375_-|K+-dependent-Na+/Ca+-exchanger-like-protein
MTLAFVALIAGLALLVWSADKFVDGAAATARYAGMPPLLIGMVIIGFGTSAPEMVVSALAAAQGNPGLALGNAYGSNITNIALILGLTALISPIAVSSQVVRKEIPILLGITLLSGALLIDGHLGGTDALILGAVFLVLMGWSIWAGMTGKGDALDADIADDISSEGMSLKRAIVWLLVGLVLLIAASRLLVWGAVTIAQALGISDLVIGLTIVAVGTSLPELASSLIAIRKKEHDLALGNVLGSNLFNTLAVVGIAAGIAPLDVDSVVLSRDWSLMMGLTLLLLIMCLGRKGQGRINRWEGGLLLAIFVAYTSWLLGSQFL
>LR134376.1|VEG97515.1|3379004_3380327_+|ornithine-decarboxylase
MLAQKRNKQIIPRITKHFAEELCIVPGGSLRTTRLSRPLPSQQTKARADLPPKDFQNRMNETLIAQDYRQLVEQFGSPLLLLDKAAVRKQYRALAAALPDVRLHYALKPLPHEAVVSVLKEEGACFDLATNGEVDLVRSQGVRPGRCIHTHPIKRDSDIRYALEFGCTVFVYDNPLELEKFIPYKDEVKLLLRVSFPNPETKVDLSKKFGCTPEQALPLLQLAQAKGIKVMGLSFHVGSQVPHSRRHVQAIDACREIMEQAWDLGLKPWVLDIGGGFPVDYEGGEFDIDGFCAPIRAALAKLPATVQKIAEPGRFISAPAMTSVSSVMGKAHRGDKIWYYLDDGLYGSYNGQLYDHVTYPVSTPYAHGELHNAVLSGPTCDSVDVIRDGIMLPDLAIGELVIGRVMGAYTWASASTFNFFPKASILILDSAQKQKLVAVA
>LR134376.1|VEG97514.1|3377083_3378454_-|amino-acid-carrier-protein
MSSIQSALTAIDSFIWGPPLLILLVGTGVYLTLRLGLLQVVRLPLALRLVFGRDQGQGKQGDVSSFAALCTALSATIGTGNIVGVATAIKLGGPGALFWMWMAALFGMATKYAECLLAVKYRQQDANGQMAGGPMYYLEKGLGSKPLAKLFALFGIGVAFFGIGTFPQVNAISDAMSLSFSVPREATAVVLTLIVALVTLGGIQSISSVSSKVVPFMAIFYILACAGVLVNNAGALPEAVMLVINSAFTGHAATGGFVGASIMLAIQSGVARGVFSNESGLGSAPIAAAAAKTDSCVEQGLVSMTGTFIDTIIICTMTGLTLVVTGVWSGDLSGAAMTSQAFAQGLDAHIGQYLVSIGLLFFAFTTILGWNYYGERCTEYLFGVKAIKPYRLIYLVLVASGAFLHLDMIWLLADIVNGLMAVPNLIGLIGLRHVVIAETRAYFSRDLDAESEPQTA
>LR134376.1|VEG97513.1|3376161_3376875_+|protein-ligase
MPYSLLSPTPDTPSTPQPPDLVLAQEQQWLRDCARHGQAGAHLWQAPQCLIVTRKDMRLPHYQSACEQLAAEGWPVYVRDSGGTAVPHGAGILNLSLLLPRTTTDLGHYYQLLGAPLLALLADYGLQGGYDFVPGSFCDGQYNLVIGGRKITGTAQRWLAPAQDHGGAVLAQAMLLVAGDLDEGTRMASRFYELAGGELRFLPGTSTTLAQQIGWQGSPEELVAQVRRRLQVLLIGG
>LR134376.1|VEG97512.1|3374664_3376062_+|xanthine-permease
MEQAAATRAPLEAHPPRRAHSELVYGIDDIPPLPQTLFAALQHMLAMFVAIITPPLIIANALGLPAADTRYIVSMSLVMSGIASFIQTRRFGPLGSGLLSVQGTSFNFLGPIIASGLALKQAAMPTEDLLGTLFGTMLAAALTIVVMSRFLHLVKRVITPLVTGIVVLLIGLTLIKVGLISMGGGYGALADGSFASHSNLFLSLLVLGLIVLLQRSRNPWLRLSAIMLAMLVGYGAALLLGKVSAPTFEGPLVMVPIPLHYGLGFDWQLFVPLAIIFVVTALEAIGDMTATSDISGEPLDGPVYMARIKGGVLADGANSMLAAVFSTFPMSTFAQNNGVIQLTGVASRHVGLFIAAMLALLGLFPAVASLVQQIPEPVLGGATIVMFGTIAAAGVRIISREELDRRALMILAVSIAMGLGVAQVPEVLQHLPELARSVLSYGVATGGLTAIIMNLLLPIRANTSR
>LR134376.1|VEG97511.1|3373288_3374419_-|response-regulator-PleD-(Stalked-cell-differentiation-controllingprotein)
MLKLSEFWSAREHSDDFTLTRMGFMTVRLRLLTCVLMLGLPAWALVDWLTLAPAQFDELFKARIFCLLALSPLIPFSYLIHSKRERMKLALGYLMAVMMLFALICLHSFGPDQELQAGYMAFPYLLISLFAIFPIPLSLGLQLAGGILVTMLLGNWWLTEQPLWSLQTLNQIWLLALFTVASAWVQCGQLNMLLQLYRESTTDELTGMMNRRLLMKRIEKARATMIHKQAPFAVLLLDLDRFKRINDTFGPLAGDAVLREVAATLAEQLEPGMVLGRYGGEEFAILLPGCGELAKAKRIAERLRIAVEARLVKSPISDELLEVTVSIGLTLARSGESIEELLNRADECLYLAKMAGRNCVIGEKTVLSSPVNTDAA
>LR134376.1|VEG97510.1|3373009_3373258_+|protein-YciN
MQPEKELITETALLEMANGIIKSHEDFIHGMRADAVEQKGEILVFKGEFFLAEDGTPTGKTMAVFNMFKLLAQQLSGKYRLN
>LR134376.1|VEG97509.1|3371516_3372896_+|mate-efflux-family-protein
MNYWQAILKQTTDREFMTRLWRLALPVSLQSMMFSLLGLIDIMMVSQLGTTAVAAVGLGNRVFFFNLLVIAGLSGGVSVLAAQYYGRGELGGVRRSLALALVGALLVSLPFALIYVLSPGSVLGFASQDPALRLLADEFLMITGATILCTAIVVPLEAALRSVGNAAAPTRIGIIAIIANVILNYALIFGNFGFEAMGVAGSAWGTTLSRLLQTVLLLIYVLRQEPRLVPRRQDWWDAFRRKEVVRFTLIALPLLFHDGLWAFGMLLYGFLYAHLGTDSLAIMTTLGTLESILISLFFGLAVACSTLLGHRLGAEEYEAAWQHSQLFLLLAPVGALLVGIAVWLLQTNLLQWVGNLPAELMGEAGQVLAIMCLGMLLKVFNMVGIIGVLRSGGDVNYSIFIDIIAMWCIGLPCAWAAVSLLGWPLSWVVAVVLLEELCKVLLVQRRIRQRHWLKNLVMG
>LR134376.1|VEG97508.1|3370538_3371396_-|AraC-family-transcriptional-regulator
MGFASECLEIAPSCEERMLGREGLPLLGEAGIFLTGLSRLRDHYLIRRNRPEFHILMVSHDEGGVLLTGATEQPIPAGALVFLPAAVPGGLRLVGERWQTSWILLDDIPRWRHLHRLGHRIWQGEEGEQLYHLLSLMQGEGVRSPLQPQLLSLLLALLDRTLQGEVRGTPELRLQALFRRVEARLDEPWSVALLAGQMACSVPHLHRLCRQLFGMGPMAWLTQLRMNKARQLLLYTNWPLGELAGRVGYSDGANFANRFRRLTGQTPGAFRRLGRKPVATDAQTL
>LR134376.1|VEG97519.1|3382813_3383029_+|Protein-of-uncharacterised-function-(DUF1107)
MKVFKQLSPRQIARYIKSFHHGSFMIEALGRFEFQGGIIDLTSLSCHQALRLARQINLAVRDLRTTALLPG
>LR134376.1|VEG97520.1|3383124_3383868_-|ABC-type-amino-acid-transporter-ATP-binding-protein
MTTDTVVSLKDVNKWYGEFHVLRNINLQVGKGEKIVICGPSGSGKSTMIRCINRLEEHQSGDILVRGTVLTSDLKHIETVRKEVGMVFQHFNLFPHLTVLENCCLAPIWVKQLPRKEAEEIAMTFLRRVRIPEQALKYPGQLSGGQQQRVAIARSLCMNPQVMLFDEPTSALDPEMVREVLDVMVELAHEGMTMLCVTHEMGFAKQVADRVIFMDRGQIIEENVPDQFFDHPQSERTKLFLSQILQH
>LR134376.1|VEG97521.1|3384039_3385134_-|amino-acid-ABC-transporter-permease
MFVNELQEALPPPSNRRGILAWIRQNLFPNWWNGLLTLGLAYLLLPAIWSALDWALFSASWLGSSRADCVQGGACWIFIESRLGQYLYGFYPVDQYWRINLVFAGLAGLLALLIWPRTPRKGWLAIFTLLVFPVIAFLLIHGGVGLEVVETNRWGGLMLTLVLAVVGIAVALPFGILLALGRRSHMPVISSLSTVYIEFWRAVPLITVLFMASVMLPLFMTTEVELDKLLRALIGIILFQSAYVAEVVRGGLQAIPKGQYEAGDALGLSYWKVMGLIIMPQALKITIPSLVNTFISLFKDTSLVLIIGLFDLLAISKVALADPAWLGFSTEAYVFIAMIFWMFCFGMSRYSIYLENKLNTGHKR
>LR134376.1|VEG97522.1|3385143_3386331_-|ABC-type-amino-acid-transporter-permease
MALYAPNQRKEQGRWWYDAKVRALIFQCLAVAAVIAFLFYIINNALTNLATRGITTGFDFLGNTAGFGILQSLIPYDETYTFGRTFVVGLLNTLLVSVLGILFATLLGFVLGVARLSSNWLVAKIATVYIETFRNIPLLLQIFFWYFSVLRTLPSPRQSVELGELAFLNVRGLYIPKPLFEDGFGYVLWALLLALLVSWGLRRWAHRRQELTGRSFPVWLCSIGLLILLPLLTFLLVGSPLSWSIPTLQGFNFRGGLTVLPELAALLLALTIYTAAFIAEIVRSGIQAISKGQTEAASALGLSPTKTLRLVVIPQAMRVIIPPLTSQYLNLTKNSSLATAIGYPDLVSVFMGTTLNQTGQAIEVIAMTMGVYLLISITTSVLMNIYNRKMTLVER
>LR134376.1|VEG97523.1|3386399_3387419_-|glutamine/glutamate-ABC-transporter-periplasmic-glutamine/glutamate-binding-protein
MKQIHKAGMVIVLSLTAANVWADGTLDAVKKKGFVQCGVGDGLPGFSNPDAKGTWTGLDVDVCRAVAAAVLGDAGKVKYVSLTAKERFTALQSGEVDLLSRNTTWTLTRDGSLGLTFAGVNYYDGQGFLVNKSLGVKSAKELDGAAVCIQSGTTTELNLADYFRANGGMKYTPVVFDTSDQTVKGFEAGRCDVLTSDQSQLYSLRIKLSKPGEAVVLPEVISKEPLGPAVRQGDEQWFKVVRWSLYAMLNAEEAGVTSANVDEMLKSTNPDIRRLLGLEEPKGAVLGLDDKWAYNIVKQVGNYGESFDRNVGAGSPLKIDRGINALWNKGGLMYAPPIR
>LR134376.1|VEG97524.1|3387920_3388223_-|Protein-of-uncharacterised-function-(DUF2845)
MKSMWWLLLLVATLPVSAGTLRCKSTLLTEGDTTAELLIRCGQPMLKEDLTRYEENGFGARMTVKYAERWTYNFGKSEFMQFVTVENGVITEIEDGPRGG
>LR134376.1|VEG97525.1|3388219_3389233_-|ABC-type-transporter-permease
MSGSMKRIGALFHARNLEFVRDRAALIWNLVFPLLLVIGFSLIFSGPPKPLVQIGVLGALPAAYQPLGAIPLLKLIPYEDEGRGRLKVRHHQLDLLLSPAQGRYWVNPDAPQGAMAEYLLRQAVFMPLQKETLSGQAIRYGDWLLPGVIGMNLMFSGLFGVGFVIVRYRKNGVLKRLRATPLSAAEFLCAQLLSRVLITLVVSLLVFLVAYWLLEVPLLGSGWLLLLIALAGGAAMASLGLLIAARIQNEELASGLLNLISLPMMFLSGVWFSLEGSPPWLQAVAARLPLSQIIDAARAVMLEGAGWQEVAGPLAQVVLFALVCVTLGAALFKWSAK
>LR134376.1|VEG97526.1|3389229_3389331_-|Uncharacterised-protein
MSGSMKRIGALFHAHNLEDLFPQRVGHSLRSGA
>LR134376.1|VEG97527.1|3389327_3390209_-|ABC-transporter-ATP-binding-protein
MAAIIEVIDLIKHFPGVKAVDGLSFAIPAGSCFGLLGPNGAGKTTTIELLEGILTPDSGQILFHGAPRAPDYRSRIGIQFQHTALQDFLTVRDTLRLFASLYPNPLPQAQLIDLCALGEFIDRDSRKLSGGQRQRLLLALALLGDPELLFLDEPTTGLDPQARHHFWQRIEAIKAQGKTVVLTTHYMDEAQQLCDRIAIVDHGRLLSLDTPAALLARHFDGVLVRLMDHPALATLGHPLQRHGDQVELSCPDVAALLPRLLSLGVPLTGMQVRSPNLEDLFLYLTGHSLRSGS
>LR134376.1|VEG97528.1|3390326_3390938_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase-FklB
MSQYDSIEQKASYGIGRNMGDQLAQQAFAGLDIPALQQGLADALNGLEFAVSRDDINDAFQVITARMQEQQEAVAKAAAGEGEAFLADNAKRADVKVTDSGLQYEVMVEGDGAVPVAGQSVRVHYHGTFTHGGVFDSSVARGEPAEFPVTGVIAGWVEALQMMPVGSKWKLYIPHDLAYGARGAGSIPPYSALVFEVELLDIL

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Crispr_ID: LR134376_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_11

3724666-3724932

Orphan

Consensus_repeat	Method
CAGGAGACCAGTAGCAGCTTCGACAACCAGGCCTTCCGGCGCCTGGACTGAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR134376_11

>merge|LR134376|11|3724666-3724932|CRISPRCasFinder
CAGGAGACCAGTAGCAGCTTCGACAACCAGGCCTTCCGGCGCCTGGACTGACCCTACCCAGACGTCTGCGGCGAGAAGCGCCCCCATTCCTGCTGGTCAGCCTGCTCAATCAGGAGACCAGCAGCAGCTTCGACAACCAGGCCTTCCGGCGCCTGGACTGACGATAAGCCGAGCCTAGGATAACAGGGTGACACGGGCAGATCAGCCCGCTCCCTCAAGAGGCCGGCAGCAGCTTCGACAACCAAGCCTTTCGTCACCACTATCAAG

>LR134376|11|11|3724666-3724932|CRISPRCasFinder
CAGGAGACCAGTAGCAGCTTCGACAACCAGGCCTTCCGGCGCCTGGACTGAC	CCTACCCAGACGTCTGCGGCGAGAAGCGCCCCCATTCCTGCTGGTCAGCCTGCTCAAT
CAGGAGACCAGCAGCAGCTTCGACAACCAGGCCTTCCGGCGCCTGGACTGAC	GATAAGCCGAGCCTAGGATAACAGGGTGACACGGGCAGATCAGCCCGCTCCCT
CAAGAGGCCGGCAGCAGCTTCGACAACCAAGCCTTTCGTCACCACTATCAAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG97836.1\|3733076_3734441_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235320
LR134376.1\|VEG97834.1\|3728177_3732443_-\|virulence-sensor-protein-BvgS	unknown	unknown	gnl\|CDD\|237951
LR134376.1\|VEG97821.1\|3713409_3715269_-\|DNA-mismatch-repair-protein-mutL	unknown	unknown	gnl\|CDD\|234630
LR134376.1\|VEG97837.1\|3734478_3736791_-\|aerobic-respiration-control-sensor-protein-ArcB	unknown	unknown	gnl\|CDD\|236842
LR134376.1\|VEG97825.1\|3717425_3718928_-\|YjeF-protein	unknown	unknown	gnl\|CDD\|182554
LR134376.1\|VEG97826.1\|3719060_3720188_+\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|272993
LR134376.1\|VEG97832.1\|3724961_3726935_-\|chemotaxis-transducer	unknown	unknown	gnl\|CDD\|223910
LR134376.1\|VEG97840.1\|3738861_3739290_-\|HIT-family-hydrolase	unknown	unknown	gnl\|CDD\|334445
LR134376.1\|VEG97822.1\|3715272_3715392_-\|DNA-mismatch-repair-protein	unknown	unknown	gnl\|CDD\|234630
LR134376.1\|VEG97824.1\|3716934_3717393_-\|putative-ATPase	unknown	unknown	gnl\|CDD\|182615
LR134376.1\|VEG97823.1\|3715408_3716911_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|236692
LR134376.1\|VEG97838.1\|3736992_3737991_+\|Protein-of-uncharacterised-function-(DUF2860)	unknown	unknown	gnl\|CDD\|371359
LR134376.1\|VEG97829.1\|3722638_3723292_+\|D-methionine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
LR134376.1\|VEG97835.1\|3732587_3732791_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG97828.1\|3721614_3722658_+\|DL-methionine-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|236863
LR134376.1\|VEG97833.1\|3726973_3728185_-\|response-regulator	unknown	unknown	gnl\|CDD\|238923
LR134376.1\|VEG97841.1\|3739361_3739985_-\|Uncharacterized-protein-conserved-in-bacteria-(DUF2057)	unknown	unknown	gnl\|CDD\|378258
LR134376.1\|VEG97830.1\|3723318_3724119_+\|D-methionine-ABC-transporter-periplasmic-D--methionine-binding-lipoprotein	unknown	unknown	gnl\|CDD\|182939
LR134376.1\|VEG97827.1\|3720272_3721013_+\|polyphosphate-glucokinase	unknown	unknown	gnl\|CDD\|224851
LR134376.1\|VEG97839.1\|3738054_3738753_-\|Protein-of-uncharacterised-function-(DUF3334)	unknown	unknown	gnl\|CDD\|314646

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG97836.1\|3733076_3734441_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235320	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional.	0
LR134376.1\|VEG97834.1\|3728177_3732443_-\|virulence-sensor-protein-BvgS	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	1.97192e-87
LR134376.1\|VEG97821.1\|3713409_3715269_-\|DNA-mismatch-repair-protein-mutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
LR134376.1\|VEG97837.1\|3734478_3736791_-\|aerobic-respiration-control-sensor-protein-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
LR134376.1\|VEG97825.1\|3717425_3718928_-\|YjeF-protein	gnl\|CDD\|182554	PRK10565, PRK10565, putative carbohydrate kinase; Provisional.	1.82432e-155
LR134376.1\|VEG97826.1\|3719060_3720188_+\|(Fe-S)-binding-protein	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	0
LR134376.1\|VEG97832.1\|3724961_3726935_-\|chemotaxis-transducer	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.93468e-63
LR134376.1\|VEG97840.1\|3738861_3739290_-\|HIT-family-hydrolase	gnl\|CDD\|334445	pfam01230, HIT, HIT domain.	1.07509e-20
LR134376.1\|VEG97822.1\|3715272_3715392_-\|DNA-mismatch-repair-protein	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	6.20371e-09
LR134376.1\|VEG97824.1\|3716934_3717393_-\|putative-ATPase	gnl\|CDD\|182615	PRK10646, PRK10646, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE.	1.32263e-80
LR134376.1\|VEG97823.1\|3715408_3716911_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|236692	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional.	1.7114e-103
LR134376.1\|VEG97838.1\|3736992_3737991_+\|Protein-of-uncharacterised-function-(DUF2860)	gnl\|CDD\|371359	pfam11059, DUF2860, Protein of unknown function (DUF2860). This bacterial family of proteins has no known function.	6.9019e-77
LR134376.1\|VEG97829.1\|3722638_3723292_+\|D-methionine-ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	2.06959e-103
LR134376.1\|VEG97828.1\|3721614_3722658_+\|DL-methionine-transporter-ATP-binding-subunit	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	0
LR134376.1\|VEG97833.1\|3726973_3728185_-\|response-regulator	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.14484e-96
LR134376.1\|VEG97841.1\|3739361_3739985_-\|Uncharacterized-protein-conserved-in-bacteria-(DUF2057)	gnl\|CDD\|378258	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057). This domain, found in various prokaryotic proteins, has no known function.	5.34561e-40
LR134376.1\|VEG97830.1\|3723318_3724119_+\|D-methionine-ABC-transporter-periplasmic-D--methionine-binding-lipoprotein	gnl\|CDD\|182939	PRK11063, metQ, D-methionine ABC transporter substrate-binding protein MetQ.	4.16863e-152
LR134376.1\|VEG97827.1\|3720272_3721013_+\|polyphosphate-glucokinase	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.52711e-36
LR134376.1\|VEG97839.1\|3738054_3738753_-\|Protein-of-uncharacterised-function-(DUF3334)	gnl\|CDD\|314646	pfam11813, DUF3334, Protein of unknown function (DUF3334). This family of proteins are functionally uncharacterized. This family is only found in bacteria. Proteins in this family are typically between 227 to 238 amino acids in length.	3.25736e-148

>LR134376.1|VEG97830.1|3723318_3724119_+|D-methionine-ABC-transporter-periplasmic-D--methionine-binding-lipoprotein
MKLGIKSAAAALLATLVLVGCGQKEENKTLKVGAIAGPETELVETAAKVAKEKYGLNVEIVTFSDYVTPNVALNDGSVDVNAFQHKPYLDAQIRDRGFKLVPVGNTFVYPIAGYSKKIKALSELKDGAQIAVPNDPTNLGRSLILLEKQGLLKLKEGAGLEATVLDIASNPRNFKIVELEAAQLPRSLEDVDLSIINNTFAGQIGLTPTENGLFVEDKESPYVNLIVARENNKDEEKVKQFVQSFQTDEVYKKGTELFKGGLVKGW
>LR134376.1|VEG97829.1|3722638_3723292_+|D-methionine-ABC-transporter-permease
MSEAMINLLFTALGDTLIMVFASALFGCLLGLPLGVALHVTKAGQILANPLLNKTLGIIVNVGRSVPFIILLVAIIPLTRLIVGTSIGTIAAIVPLTVGCIPFIARLVEGALMEVPDGLLEAAKAMGAKPLQIIAKVLLPEALPGILNSVIITLVTLVNYSAMAGAIGGGGLGDVGIRYGYQRFDPTVMLVTVVILVVLVQLIQSAGERLVKQCDHR
>LR134376.1|VEG97828.1|3721614_3722658_+|DL-methionine-transporter-ATP-binding-subunit
MIKLIGLNKVYGKGSDAVHALRDVSLHVPQGKIFGVIGASGAGKSTLIRCVNLLERPTQGQVFVDGQDLAALPERDLTQARRQIGMIFQHFNLLASRTVFANIAFPLELAGWSKAQIQARVEELLALVGLEARAHAYPSELSGGQKQRVAIARALAPAPKVLLCDEATSALDPQTTRSILSLLKEINLKLGLTILLITHEMDVVKGICDEVAIISDGSLIEQGEVAWFFSNAKTQLARDFIHSTIHLEVPQEYQDRMSPERVANSYPLVKLGFTGSTVDSPLISEVSRRFNIDISILSADIEYAGGVKFGFLLAELFGDEAQCEATQQFFIDNHIQLEVMGYVRSND
>LR134376.1|VEG97827.1|3720272_3721013_+|polyphosphate-glucokinase
MQMLGVDIGGSGIKGCLVDTETGMLIGERYRLATPQPATPAAIAHTLKALVEHFEWKGPVGCGFPAIIHNGIAKSAANIDKSWVETDAAHLFADVTGLPCHVLNDADAAGLAEMRFGTGRDRKGVIILITVGTGIGTALFVNGQLLPNTELGHLMLEGMIAEHYCSDAVRKREDLSWSRWGKRFNKYLARLEFLFSPDLFILGGGSAAKLDKFIDRIETRAPLVAAASLNQAGIIGAALHAVEQGG
>LR134376.1|VEG97826.1|3719060_3720188_+|(Fe-S)-binding-protein
MTATELQQLAQDIKLWARELGFDQVGITDTDLAVEEPRLQAWLDAGYHGSMDYMARHGMMRARPHELLPGTLRVLSVRMNYLPFEAGFAATLRDPTLGYISRYALGRDYHKVLRNRLKQLGERIEQRCETLGWRPFVDSAPVLERPLAAKAGLGWVGKHSLLLNEAAGSFFFLGELLVDLPLPMDAPVEKEQCGKCVACINICPTGAIVAPYVVDGRRCISYLTIESDEPIPLELRPLLGNRIYGCDDCQLICPWNRYADVSPEPDFSPRPNLHRPPLLDLWQWSEAEFLKHTEGSPIRRIGYQRWRRNLAVALGNGPATAAVSDALQQALGAAEPMVAEHIEWALATLAQRQQDDSKKTRLLIRCIEKGLPDHA
>LR134376.1|VEG97825.1|3717425_3718928_-|YjeF-protein
MVQVIEDAISGKEGTSLAQPLWRAEQIRTLEQRWARRGGCDTYELMTRAGAALLCYASHHWPQCGNWWIFVGPGNNGGDGYVLARLARRIGLDPLVIAARAPGLLTGDARRAADEWLGAGGSVQLVDELELSSLTPPDLVIDALLGTGVHIPLSPSMTKIVATINGLNAPVLAVDLPSGLNADTGRAMGALVRATRTLSFIGIKQGMLTADGVDGVGQLDCDSLGVTPDADLVPAAERIDYPALKSLLTPRPRSAHKGRNGRVLLVGGNLGMQGAILLAGLACLRAGAGLVRLCQHPSHGAVSQVQPELMSGQAGIDEDWAEVKVVGPGLGQDEWGRAQYERLVRADGALVLDADGLNWLAQGPRHQDNWVLTPHPGEAARLLGCTIAEIETDRFAAVARLQRRYGGVVLLKGAGSLICDGQRISLCDEGNPGMASGGMGDLLSGIIAALLAQGWSASMATRLGAVIHGEAADLAAAEGERGMLASDLLPWIRRLVNPTQ
>LR134376.1|VEG97824.1|3716934_3717393_-|putative-ATPase
MMTLPDEAATVALGGRLAQACQQATTVFLHGSLGAGKTTLTRGWVQGLGHQGKVKSPTYTLVEPYELDRWQVYHFDLYRLADPEELEFMGIRDYFGADTLCLVEWPEKGEGWLPSPDLEITLTYVHEQREALIAARTAIGEAILERLSSQCA
>LR134376.1|VEG97823.1|3715408_3716911_-|N-acetylmuramoyl-L-alanine-amidase
MALPSWANQLKSVRVWPSPDNTRVVLDMSSAPNFNYFTLSGPSRLVIDLKGASNAANLTRIGNKSELVRKIRESTPLEKGSLRLVLDLSSTIKPVVFPLAPAGPYGHRLVIDLPYEEKGATTAQAAPVGGQGKAIVIAIDPGHGGEDPGSIGPRRTYEKRVTLAVSQKLAALIDREPGMRAVMTRRGDYFVDLNKRSEIARKAKADLLVSVHADSFHNSTPRGASVWVLSTNRANREMGSWLEKQEKQGELLGGVGKVLAESDPNPYLAQTFLDLSMDKSRAEGYDVSRQILRSMGKVARLHKKAPEHASLAVLKAPDIPSVLVETGFISNHGEEKLLATASYQDQLARAIFEGIRNYYRSHPTKGPMMTGKGQQVARSSQPAAKKAVVAAAPRQQVTNRMPATVPSRSNDGGAPVSSVSGGSGAGVIKPYSVASKEPSVPVTSAQSNDKSKMIRHVVTRGQSLSRLAEKHGVSQAKLVEINKLKSRDIQIGQVIYIPQG
>LR134376.1|VEG97822.1|3715272_3715392_-|DNA-mismatch-repair-protein
MAIPILAPILAKQIATGEVVERPAFVVKASGSRKMKRQE
>LR134376.1|VEG97821.1|3713409_3715269_-|DNA-mismatch-repair-protein-mutL
MPIRILPPILANQIAAGEVVERPSSVVKELVENSLDAGADRIEVDIDKGGAKLIRIRDNGSGVPKDELVLALSRHATSKVATLDDLEGINSLGFRGEALASISSVSRLTLTSRTQEQTEAWQAEAQGREMSVTVKPAAHPVGTTVEVVDLFFNTPARRKFMRSEKTEFAHIDELIRRIALSRFDCTLILRHNGKVVRQYKSANTVAEQERRLAAVCGTPFMHHALAVESEHSDVRLRGWLALPAGARPQNDLQYTYVNGRMMRDKLINHAIRQAYDELLPADRFAAYVLYIELDPHQVDVNVHPAKHEVRFHQARLVHDFIFQALFTALRREAPAAEPLAESQVELPASPQIEYPGQAPRPEWYGAEHSYRAPVPTREVREGGAARAGSYQPPEPPGRDAMRGMGALLTTLPMAGDAAVATPTAGAPAGPSPQGCRALTLVEQAYLLLERNGQLALLSLVRAERVLLRHWLLEAWGQGLAAQPLLLPVSFKLPKNLIALVEEQERLLKRIGLELKSGGRDTMILTRVPALLRQTDLVRLLPELLQLIESGSDSDGSQLAEVVCQWLVEQGISSEKIYDFSTASRLLTELVTDFSDQLADIRMVRPLSLATVLEEFAHGV
>LR134376.1|VEG97832.1|3724961_3726935_-|chemotaxis-transducer
MKISSKLLFSFCFINLLIILSSALVYHQLGRIQQSQSALLEQALPALQRDEASQKALIATVSSLRAYLILGKDPAQAQRLKLEWDGAWQAIERQAFTPALTRALKAFKGKQEKVWALAHTEENLPAHSLMLLEAGPLAEAALDQLQSFANEEVATPQAQLPGDRRLLLKQVGDAYNGLANALSALRDFLISGDKEYQAKYQDYYQFHLQRVAELKQQQGQFTEAEQGLWALFEQMSAPFAELVGQVIARRQAPDWDQANHLMATDVEPALDRLAGQLASQVTHTRAEVDKIAGQMAAAGQTIHHSLLLTTLSTISLGTLVALLFSRRLTRDIASLVARAGLVADGRLPAAPLPVLRRDELGGLTGSINRMSGQLRQLVGEIQGAVGQVEGACGEVGRTSNIIVGDLASQNQRVDTVAAAIEQMSASTRDVAGNIAEAAEAARQTERQARQGGDALTRMTTTMQQIAAMIAEANQAMGQLSRQSEQVGRVTEVIATLAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSQSTAEINLTIASIQQQTRQTADTVGSGTRLVEQGHGAVASVTETLETMTRLVQDLCGQLGAIATATEQQSRVAQEVAGTVEEIAGLSRQSSERSQQGEEIVARLSRETGRLTSVISRFELG
>LR134376.1|VEG97833.1|3726973_3728185_-|response-regulator
MNNKQHELVIMVVEDHNFQRKALMHQISRLGYGQLLEAQDGEAALELCQHHQVDILFCDLRMPGMDGMALLRRLSLGGFRGGVILCSALEDDVVDAVLRMSTAYGLQVLGRIDKPADPQQIRRLIGAWRPQQERTQEEDGHSLTQDDLSAALEQDQLLPWYQPKVSFGTGQWIGMEALARWQHPEYGLVSPVHFIPLAERHGLIDQLTEVIINKSLRDGHLWEQTGLSLNLSMNLSTTSLIEGDLCNTLLNHCQRWSINPELITLEVTESAFVKDLGKSLEVLTRLRMHGFGLSIDDFGTGYSSMQQLALLPFTELKLDRSFVDRCYEDPSRLAIIESSIELARKLGLKSVAEGVEDEPTWQLLARLGCDQCQGFFSARPMPRDELLEWHRSWLDRLPALIKN
>LR134376.1|VEG97834.1|3728177_3732443_-|virulence-sensor-protein-BvgS
MLYRCVRSILLCWLACWGLVAAAETTLDSDKLTPSQQTWLASHNELVVGMPSVAWPPYVYTDGRGNFAGPLDAFASQVAVRLGLSLRYQTYPNNADAQLALLNGEVDMLIGVAPSQTRQLQMQFTSELMAVPRGILLTGSEYDLSLEKARGLRWVCRFGVSACDELLRLGIMDLVTVDSQDEAIFMLKEGRADAYLGDLPALTRLQALSSMKLTTVDWMRDTSLAMAVAPGDEALLGLLDLALQQISPIERRRILEMSGIVGYELIEGRQEVAFNQDEQAWLAQHPVITFGVFPDWPGMSEIDDRGRLKPGYVSDLLEIMSQRAGLQFKVLPTASWHDTLDAFQAGRLDFIPAMTPTMERQQLARFTPDYGSLSRVIVARQGTPELSSLKALKGRRVGIVGSSVDATLLTKMGAELVIADSYSQMLSLLDNHSADFVLITVNTLGQSLQQGHSNRYQVVFSGHQLTIPIAMATQQQDPMLQQILTKVLLSIQQYELNELERKWLALTIQTGINPRTVLLWSSLGVGIFLLCVLLFLGWNRTLRRQIAQRRQAEQQLNEQLTFVQTLLDSLPNMVVLRDKEMRITLCNRTYRDAFIREQNDGGLYHLDSLPSQEREKVLREEQEVWLSGQAMEGAGYSRRHDGTAFHVIYAKQPYRAQSGEQLGVLTVLTDVTRIKEAEARARQAETRLTQITDSMPGIVYQYHWLGPGNGRFLYTSQGLKEIVGYDADPVQSGVVGSTILGLTGPALHDFVATVERHARAMQPLDLEVDIMRHGIPCYLQIRGHFVHQEGLDGVILNGVVQDITGLKHQELALRQAREVAEQAMQARSRFLATMSHELRTPISGMHGMLELLQMSDLNDDQRYMLRNIATSTNNLLYLVNDILDFSKIEAGQLQLHYHGCRLTSVICDVIRGHATLAYGKGLKVTLEWAAEVPDQASMDAIRVGQVISNLLNNAVKFTEWGEIAIRVGYQANQLLFAVRDTGIGIADDKQVNLFTPFKQVESDITRRFGGTGLGLAICQQLIHKMGGSLALESKPGTGTCVTFKIPLTECQWDAPPLVDQDWWWLGEDAALRATMEQLGARLHRLEPHQWRQPLSGRLLAEERLLERALGTDWQQHLQQSALKGIVLSPQEALRGRMGSDAWWRLGQSPLYPDLLLETCRQLAGERATQPGQFLVDKLQGRVLVADDHPINRALLARQLAILGIDAELVDDGEKALRAWQGQGFALLLTDCHMPVMDGYSLTRTLRAAGDPAPIIGVTADTSEEASRQMQAAGMNDMLFKPYSLETLRQMLQRWLPVASAPSEPQPRVQASTQEQALSWISLFGDEALARSMAQEYLDSNRQDSEEMVRALACQDTQALVETAHRIKGAARMVGQTALATEAAQLEAAARLKQLDRLDELSQTVQVLMDAIACEIGLWLDE
>LR134376.1|VEG97835.1|3732587_3732791_-|Uncharacterised-protein
MSIELVLLRTVESLVQKRITRLERRVSYLNLSPAMLKDIGLEGQDVQVAHVRVREFQTGFRLGNRIT
>LR134376.1|VEG97836.1|3733076_3734441_-|deoxyguanosinetriphosphate-triphosphohydrolase
MYQRLIPSLRVHPWGEEPLLEATEQDRARIVQAAPVRRLQQKTQVFPLDVKASVRSRLTHSLEVQETGRQISRRILAALPAGTVCEGAFINLVEMSCLLHDVGNPPFGHFGEQVMSQWLAQELDALFASAHDRLPSPQWAELRQDLLVFDGNAQSLRLVHSLHELNLTLGQLAALCKYPQQPQPGQHFGQHHGWASKRGIFFSEQPLYQSLSQHLGLAPGCRHPLVYIMEAADDISYCIADLEDAVDRHILSLSELQQALRSADGGDYMAGLLTQAAASGRGFFPHFRQQLTRDLVTLAADTYVSEHVVILSGAYPQALLHGQAPAARVLDTLKQVAREQVFMRPEVEALELEGYAALRGVLSTYACLLALPAAQFERLLAGKGGSELFFARRLFHRLSARHLKAYRLAVATADPRFESGAEQEWYYRVRLLLDYVSGMTDTYALEEFRLLSGI
>LR134376.1|VEG97837.1|3734478_3736791_-|aerobic-respiration-control-sensor-protein-ArcB
MKQIKSWAQYYVDLMTKLGLVRFSMLLAAGIIVLAVTIQMGVTQFLRGTVDIVDLVRSVFFGLLVTPWAVYFLSIVVDQLEDSRQRLTRMVRKLQDMRERDLELNSQLQENISRLNAQIAETNRAETLRQQAIEDLENEVFQREKAQLHLGERTALLRSFIDCSPDLVYYRNEEQQFSGCNRAMEELTGKVEAELIGLTPFDVYKQDIASKVVETDKQVFTSNEPLTYEQWLEYPDGRKAYFELRKVPFFDRFGKRLGLLGFGRDITERKQYQDKLEKASRDKTTFISTISHELRTPLNGIVGLSRMLMDTPLDAKQHQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTRIDLPAFLDELETLSRIQAEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLVGNAVKFTDEGGVTVRCLSHASDVPGKLALHFEVEDTGVGIPRAQQEKIFAMYYQVQGKKHATGTGIGLAVSRQLVQAMGGELYVDSDPGEGSCFTAELEVDCVESLAAEPEQELPALDILLVEDVELNVTVACALLNKLGHQVKVARDGTQALAMANPDDFDLILLDIQLPDMTGFDVAAQLLARYGDSLPPMVALTANSTGDRQYYRDRGLQDVINKPLGSKAVREVIGHLFADLADDEADEQEDAGNQDELLDLPFLTDYASTVGKPVLLSSVDLFEKMLPDYMAVLDTNMIARDQAGVVEEAHKIKGAAGSIGLRRLQQTAQLIQSPEHPAWWENVEDWIETLRREYPGDIARLRRWLLS
>LR134376.1|VEG97838.1|3736992_3737991_+|Protein-of-uncharacterised-function-(DUF2860)
MRNLTLLSLSLLVANAAHADLGAIPTQSGWSGFLLGGVSAISRESNFYAGGDSNGHIDGLGSPNRESELAPLINADIRYTFADTRTQVFLGNLIQDALRFDFTQQLGIRQEMGDKGIVAGSVVFNAMPVELWNDPFAVGVDRSATDAKSKGVRFAWDKIWGSNFNGSLTTREMELDEEHSGQQYDQRNGTHYAPMLDRNGKIHDMELSYQWHFGGGQLLEPAILYKQADLDGSAESFKNLGMQLTYAKRGPQWSVVGNAYAGKREYDEANPLFGQRADAKEFVLAGTFFWHNLMGVRDLSATVTAAYNQADSDIAFYDTQTSILSAGLLYNF
>LR134376.1|VEG97839.1|3738054_3738753_-|Protein-of-uncharacterised-function-(DUF3334)
MILTRSDDDAVLTTEDVLLSLCNSVTGVLSAATQTQVRFSGMVQRISKTCLKPDIGCFVLFDGGFSGLVVINFSAAAAMELYQSYMLSMGLSKEDLAISHTSDEVSNVMGELMNQILGSFTGKVGRELQTHITQNQPKMLALNKQVMLSVDTNLDNPETRRVTFFTASNNIFYLELAMDGTEFIRLHNEGRDQEEIDPDALIAQTKLAAAKPAPVAAPIANDHDDLLNSLGL
>LR134376.1|VEG97840.1|3738861_3739290_-|HIT-family-hydrolase
MFELHPRLQVDTQSLGDLPLCRVLLARDSQYPWLILVPRIAQLREIHHLAPEQQQQLMQESCAVAALMEQALNPDKINVAALGNMVPQLHLHHVARFSTDPAWPGPIWGAHPAVAYEAQDLRIAADNWRARLATLSGFTPLQ
>LR134376.1|VEG97841.1|3739361_3739985_-|Uncharacterized-protein-conserved-in-bacteria-(DUF2057)
MKGHQGWVGVMLLCAGAAQAEVEVRVPENFQILAVSAGKVQDEQHAVLADGQQQLLVRYEGVIPSRNSSDNDRQIRSEPQVIRYDASRQSVRLQAAVPGDESGMERYAKAPLVSLQAGGQPLAMQQDELVVNGMQIGMDWRARLEEYNRGGGKAALNTVGATTVATVAAGTSVPVAASELEGQLQRLFLQADPALRKRFIGWAVPQL

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Crispr_ID: LR134376_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134376_12

3867197-3867312

Orphan

Consensus_repeat	Method
AAAAACAACTCCCGGCTCTTCAACTGGCGTTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134376_12

>merge|LR134376|12|3867197-3867312|CRISPRCasFinder
AAAAACAACTCCCGGCTCTTCAACTGGCGTTTGCTGAAACATGAGAGGCTGCAGCGCCAATCCGCGTTAGCTTTTCCGTTTCAAAAACAACTCCCGGCTCTTTAACTGGCGTTTGC

>LR134376|12|12|3867197-3867312|CRISPRCasFinder
AAAAACAACTCCCGGCTCTTCAACTGGCGTTTGC	TGAAACATGAGAGGCTGCAGCGCCAATCCGCGTTAGCTTTTCCGTTTC
AAAAACAACTCCCGGCTCTTTAACTGGCGTTTGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134376.1\|VEG97967.1\|3872993_3873974_-\|sigma-E-factor-regulatory-protein-RseB	unknown	unknown	gnl\|CDD\|236525
LR134376.1\|VEG97960.1\|3866280_3867018_-\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|235380
LR134376.1\|VEG97971.1\|3877047_3877434_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134376.1\|VEG97953.1\|3855077_3856715_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LR134376.1\|VEG97951.1\|3853140_3853458_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
LR134376.1\|VEG97969.1\|3874603_3875185_-\|RNA-polymerase-sigma-factor-RpoE	unknown	unknown	gnl\|CDD\|171347
LR134376.1\|VEG97965.1\|3870476_3872270_-\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LR134376.1\|VEG97964.1\|3869549_3870473_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|182787
LR134376.1\|VEG97968.1\|3873995_3874580_-\|sigma-E-factor-regulatory-protein-RseA	unknown	unknown	gnl\|CDD\|182789
LR134376.1\|VEG97970.1\|3875366_3876974_+\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|236374
LR134376.1\|VEG97959.1\|3865158_3866082_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
LR134376.1\|VEG97966.1\|3872441_3872912_-\|sigma-E-factor-regulatory-protein-RseC	unknown	unknown	gnl\|CDD\|377263
LR134376.1\|VEG97957.1\|3861827_3864539_+\|two-component-system-hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|236848
LR134376.1\|VEG97956.1\|3860269_3861592_-\|23S-rRNA-(uracil-5-)-methyltransferase-rumA	unknown	unknown	gnl\|CDD\|237291
LR134376.1\|VEG97963.1\|3868877_3869549_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
LR134376.1\|VEG97952.1\|3853689_3854988_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
LR134376.1\|VEG97954.1\|3856856_3857654_-\|MazG-family-protein	unknown	unknown	gnl\|CDD\|236569
LR134376.1\|VEG97958.1\|3864675_3865155_+\|Protein-of-uncharacterised-function-(DUF1456)	unknown	unknown	gnl\|CDD\|227144
LR134376.1\|VEG97962.1\|3867975_3868881_-\|GTP-binding-protein-Era	unknown	unknown	gnl\|CDD\|234624
LR134376.1\|VEG97955.1\|3857733_3859944_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797

Protein	Function_ID	Function_description	E-value
LR134376.1\|VEG97967.1\|3872993_3873974_-\|sigma-E-factor-regulatory-protein-RseB	gnl\|CDD\|236525	PRK09455, rseB, anti-sigma E factor; Provisional.	7.72826e-90
LR134376.1\|VEG97960.1\|3866280_3867018_-\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|235380	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.	4.85719e-156
LR134376.1\|VEG97953.1\|3855077_3856715_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LR134376.1\|VEG97951.1\|3853140_3853458_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.40377e-41
LR134376.1\|VEG97969.1\|3874603_3875185_-\|RNA-polymerase-sigma-factor-RpoE	gnl\|CDD\|171347	PRK11923, algU, RNA polymerase sigma factor AlgU; Provisional.	2.74505e-115
LR134376.1\|VEG97965.1\|3870476_3872270_-\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LR134376.1\|VEG97964.1\|3869549_3870473_-\|signal-peptidase-I	gnl\|CDD\|182787	PRK10861, PRK10861, signal peptidase I.	1.41426e-148
LR134376.1\|VEG97968.1\|3873995_3874580_-\|sigma-E-factor-regulatory-protein-RseA	gnl\|CDD\|182789	PRK10863, PRK10863, anti-sigma-E factor RseA.	1.39507e-52
LR134376.1\|VEG97970.1\|3875366_3876974_+\|L-aspartate-oxidase	gnl\|CDD\|236374	PRK09077, PRK09077, L-aspartate oxidase; Provisional.	0
LR134376.1\|VEG97959.1\|3865158_3866082_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	6.92934e-86
LR134376.1\|VEG97966.1\|3872441_3872912_-\|sigma-E-factor-regulatory-protein-RseC	gnl\|CDD\|377263	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC. This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions). In Pseudomonas aeruginosa, de-repression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonisation in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains an ApbE domain pfam02424, which is itself involved in thiamine biosynthesis.	8.99965e-35
LR134376.1\|VEG97957.1\|3861827_3864539_+\|two-component-system-hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
LR134376.1\|VEG97956.1\|3860269_3861592_-\|23S-rRNA-(uracil-5-)-methyltransferase-rumA	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
LR134376.1\|VEG97963.1\|3868877_3869549_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	1.15249e-123
LR134376.1\|VEG97952.1\|3853689_3854988_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LR134376.1\|VEG97954.1\|3856856_3857654_-\|MazG-family-protein	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.19022e-147
LR134376.1\|VEG97958.1\|3864675_3865155_+\|Protein-of-uncharacterised-function-(DUF1456)	gnl\|CDD\|227144	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown].	1.61293e-56
LR134376.1\|VEG97962.1\|3867975_3868881_-\|GTP-binding-protein-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	0
LR134376.1\|VEG97955.1\|3857733_3859944_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0

>LR134376.1|VEG97960.1|3866280_3867018_-|pyridoxine-5'-phosphate-synthase
MSEIYLGVNIDHIATLRNARGTQYPDPVQAAFVAEQAGADGITVHLREDRRHITDRDVEILRQTIQTRMNLEMAVTEEMIGIACRIQPQFVCLVPEKRTEVTTEGGLDVAGQLDKITDAVTRLAAVGAQVSLFIDADPLQIDAAAASGAPFIEIHTGRYADATTDAERNAEFKRIAAGASYAAGKGLKVNAGHGLHYHNVKAIAAIPELYELNIGHAIIGRAAFDGLAKAVSDMRLLMQEARQGI
>LR134376.1|VEG97959.1|3865158_3866082_+|N-acetylmuramoyl-L-alanine-amidase
MGQRVRPPSAHPEVAGGRRWPSLFSRLGRRSGWHSLLSCCLLLGLSACQPASYRLDSRYASANQNERIAFLILHYTDEDDTHSLRLLTEPQYKVSAHYLIPRDTDQTPLPIYQLVPDSQRAWHAGRSRWHQYAGLNASSLGIEIVNLGYETGQELLPVQLRHWQPYTQAQIAAVGALAQELIRRYQIPQTQVLGHSDVAPERKQDPGPLFPWRELALQYGVGAWPDEARVEQLRQQPAPAWDALAWQQQLARYGYGIAPSGDWDEQSRTVLSAFQLHFRPALVNGEPDAESQAILSALLERYFPESR
>LR134376.1|VEG97958.1|3864675_3865155_+|Protein-of-uncharacterised-function-(DUF1456)
MTNNDILRRLRYALTISNDQMVDMFAKGNLTVDHAQLHSWLLKGAEEGEEQDPGFVACPDAALSQFLDGFIITRRGVREGAPTQVIPNRINNNLILRKLRIGLDYKEEDMLGTLKLADFNLSKSELSALFRSKDHKHYQDCGDQILRNFLIGLTTKYRA
>LR134376.1|VEG97957.1|3861827_3864539_+|two-component-system-hybrid-sensor-histidine-kinase/response-regulator
MTRYGLRARVLAFTILPTLIIGGLIAGYFTFHRYHQLENNLIDQGINIIEPLAIASEYGMTQHSRESLKRLIGLTHRKNSPFIKSIAVFTQDNQLFVTSNYHRDFGQLRLPDGTAIPELTSVSFNGDDIILRTPIQAETSLDGFPLPSDLEPPVIGYISMQLATDRAIVLQYRDAFFAVVMVLIGLAVSTLFGFRLVKSVTQPITDMVQAVHRIREGRLDTRVSGQLTGELDMLKNGINAMAKALSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTALTPSQTDYMQTIEKSARNLLGIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYLTGDPMRLQQVLTNLTGNAIKFTERGNVDVHIQQSGSASGNKVRLNVLIRDTGIGISEEQQRQLFQAFNQADSSISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSVFSFSLDLDISPLPQSERLPLDRIQGKRLWLLEPDPFAHASLLALLAEWQLDVQALSIDAEWPEMSSQDMVIIGSSTLHTPQQVITRLDGLSGQQNTIVLLSSHEPALYEAMLAHGAEHCLSKPINHRKLLHALLSPEATKRTPLPAASPRRVQAVKVLAVDDNAANLKLIAAMLKEMVSQVVVCKNGKEAVNLAQSQPFDIIFMDIQMPIMDGISATQAIRRHSLNTETPIVAVTAHAIPGERERLIRQGMDDYLAKPIDEGMLAQLITDFTHRRHQNHGDQQIDWSLAVRQAAGKTELAQEMLTMLLASFDEVEPLLEAALSGQADDAEVLAQLHRLNGGCAYSGVPGLQRLLSQLEQQLRDGVPVGELEPELLELQDALEQVRQEAPRYLA
>LR134376.1|VEG97956.1|3860269_3861592_-|23S-rRNA-(uracil-5-)-methyltransferase-rumA
MAQFFKPQKKSTQPQRIEFTIDSLDHHCVGIGRHQGKAIFVEGALPGERVKARIIDDKKQYAHAALQQLVTPADNRIAPFCAHYRECGGCNAQHLSEADQQAAKAAGLVSLFERLGQIKAPALEPVLTGEARAYRRVCRLAIKFDKNGRCTRVGFRRRQSNDLVEITSCPVLTASLSALISPLRECLNRLKSQRELGHAELIQAEQGILLLLRHTGRPNEADRALLTEFAEAQGIDLYLQAADERIEPLRQQFQPAYSLDGLSLAFAPGDFIQVNGPINQSMVAQALAWLGATKADKVLDLFCGIGNFTLPLARQAREVVGVEGDLAMVTRAEENARRNGIDNARFYKADLSGDIVGMSWAREGFDLVLLDPARPGALEVMSHVVALSPKRVVYVSCNPVTLARDSQVLVKGGYRLARLGMLDMFPHTGHLESMALFERD
>LR134376.1|VEG97955.1|3857733_3859944_-|GTP-pyrophosphokinase
MVAVRDIHLKDNFTLEEWVSSLTLSENDKNQLRTAYQYCLTLGDEALTSRLLVRGVEMVGILLMLSMDLATLKAAIIYPFVEAGLLNQERMSEDFGPKIAKLVEGVLEMEAIRSLQTLHRSETSPEQVDNVRRMLLAMVEDVRAVVIKLAERIACLREAKKADEETRVLMAQEITNIYAPLANRLGIGQLKWELEDLAFRYLHPDTYKQIAKQLDEKRLDRERYIREFVQSLRDALAEAGVEAEVYGRPKHIYSIWRKMQKKHLEFNELFDVRAVRVVTKRLQDCYAALGIVHTHFHHIPREFDDYVANPKPNGYQSIHTVVVGAEGKTIEIQIRTEQMHQDAELGVAAHWRYKEGAQAAAKTSTFEDKIEWLRKLLAWQEDLSESGSLLDDLRSQVFEDRVYVFTPKGDVIDLPAGATPLDFAYHVHSMIGHRCIGTKVDGRIVPFTYTLQTGDQVEVITQKEPNPSRDWMNPNAGFLRSSRARAKVATWFRKLDRDKNIAAGKELLEKELDRHNLTLSKVDKVVLERFHAEELDDLLAGIGSGDIRINQLLNYLDTRYNKPTAEEEDRRLLEKLEQKANLPFRPKPKDHIVVEGVGNLMTHIARCCQPIPGDGIQGFITMGRGVSIHREDCEQLKELSRRNPERLIEAVWGENYSGGYGLTIRILSNDRSGLLRDITTVLANEKINVMGVRSRSNVREQTAEIDMELEIYNINAFNRALAKLSQLNDVISAKRL
>LR134376.1|VEG97954.1|3856856_3857654_-|MazG-family-protein
MSQRYDLPQLLEIMAQLRNPQGGCPWDLKQDFQTIVPHTLEEAYEVADAIETRDWEGLKGELGDLLFQVVFYAQLGKEQGLFDFADIVATVSEKLIRRHPHVFSDAELGDEQAVKLNWEAEKAKERAALDKESVLDDIPLALPALTRAAKIQKRCATVGFDWKTLGPVVDKIHEEIEEVMEEALMVDVDEERVSDELGDLLFATVNLVRHLGKDPEQVLRAANTKFERRFRQVEQFITAEGLKMTDCSLEKLDAAWDKAKETEQS
>LR134376.1|VEG97953.1|3855077_3856715_-|CTP-synthetase
MTTKYIFVTGGVVSSLGKGIAAASLAAILEARGLDVTIMKLDPYINVDPGTMSPTQHGEVFVTEDGAETDLDLGHYERFIRTKMTRRNNFTTGRIYADVLRKERRGDYLGATIQVIPHITNAIKERVIAGAEGHQVAIVEVGGTVGDIESLPFLEAIRQLAAEVSRDNAMFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRAIPANERAKIALFCNVPERAVISMKDVDSIYKIPALLKSQNLDDYFIARFGLKCNEADLSEWEQVVYEEANPTAEVTIGMVGKYVSLPDAYKSVNEALKHGGLKTRLSVNIKFIDSQDIETRGSELLEGLDAILVPGGFGERGVEGKILAAQYARENKIPYLGICLGMQVAMIEFARNVAGMTGAHSSEFKKDCAYPVVGLITEWVDEEGNVETRTEKSDLGGTMRLGSQLCHLVEGSKVRQMYGSPTIYERHRHRYEVNNKLLPQIEAAGLKVTGLSADKKLVEIIEIPDHPWFVAAQFHPEFTSTPRDGHALFAGFVKAAGEYQKRNLK
>LR134376.1|VEG97952.1|3853689_3854988_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVLKAIEAVNGPIAQALLGKDAKDQAAIDQIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGLPLYAHIAELNGTPGVYSMPLPMMNIINGGEHADNNVDIQEFMIQPVGAKTLKEAIRMGAEVFHNLAKVLKSKGYATAVGDEGGFAPNLKSNAEALEVISEAVAAAGYKLGTDITLAMDCAASEFYDAEKKEYNLKGEGRIFTSNEFSDYLADLTTKFPIVSIEDGLDESDWDGFAYQTKELGSKIQIVGDDLFVTNTKILKRGIDNGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGAKAPFRGLKEVKGQ
>LR134376.1|VEG97951.1|3853140_3853458_-|cell-division-protein-FtsB
MRLLTLILLFLLGGLQYDFWLGKNGLSDYRELSDAIHRQQQDNLVLKDRNNLIYREIDDLTSGLEAIEELSRNDLGYIKQGETFYRIIPKDNGQETEPDGAPYDD
>LR134376.1|VEG97962.1|3867975_3868881_-|GTP-binding-protein-Era
MTDTDTTYCGFVAIVGRPNVGKSTLLNKLLGQKVSITSKKPQTTRHRILGIDTEDNYQTIFVDTPGLHIEEKRAINRLMNRAATSSLGDVAMVVFMVDGTHWTKDDEMVLGKLRHLPCPVVLAVNKVDNVKDKEDLLPHLEWLGQQMKFSHILPISAEKGTNVEKIREWAKDLLPENNHFFPEDYVTDRSSRFMASEIIREKLMRFTGEELPYSVTVEIERFKVEENGLYHIHGLILVEREGQKKMVIGNKGEKIKTIGTEARLDMERLFQNKVHLELWVKVKSGWADDERALRSLGYGDD
>LR134376.1|VEG97963.1|3868877_3869549_-|ribonuclease-III
MNIKMNRLQSRLGHVFQDQDRLTRALTHRSAGSRHNERLEFLGDSILSLVIADDLFHRFPQAAEGDLSRMRATLVREKTLAELGREFDLGDHLILGPGELKSGGFRRESILADTVEAVIGAVYLDTNLETVRTLLLSWYASRLDEIKPGIEQKDPKTRLQEILQGSRKSLPTYTVTNVKGEAHNQEFTVQCDVDGLDGPLVGVGTSRRKAEQAAAQQALERLS
>LR134376.1|VEG97964.1|3869549_3870473_-|signal-peptidase-I
MASTFSLILAIVTVLTGIIWTVDKLVWSKQRAAKIAAARANAGPNIDEKTLAKVAPMPVWIEQTGGVFPVIALVLILRSFIFEPFQIPSGSMMPTLLVGDFILVEKFAYGLRDPVTNTKFLETGAPERGDVVVFKYPLDTRVDYIKRVVGMPGDRVIYRNKELMIRPKCEEQEGKTCPGFKKLDVKFEQRGEFSQMGIPLDRYTEQLGSVSHETLRNPLMPDLVDRYYRQPGTYPDEWVVPEGQYFVMGDNRDNSTDSRFWGFVPEQNLVGKAVAIWISFEFEREEGSSLPSWVPTGVRFNRIGGIK
>LR134376.1|VEG97965.1|3870476_3872270_-|GTP-binding-protein-LepA
MKHIRNFSIIAHIDHGKSTLSDRLIQTCGGLSSREMQAQVLDSMDLERERGITIKAQSVTLNYQAQDGNTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMELEVVPILNKIDLPAAEPERVAEEIEDIVGIDAIDAVRCSAKTGLGVDLVLEEIVARIPPPEGDPDAPLQALIIDSWFDSYLGVVSLVRIKNGSLKKNDKIKVMSTGQVWGVDRIGIFTPKQVDTQGLGCGEVGWVVCGIKDIHGAPVGDTLTQAKNGADKALAGFKKVKPQVYAGLFPISSDDYESFRDALDKLSLNDASLFFEPESSTALGFGFRCGFLGMLHMEIIQERLEREYDLDLITTAPTVVYEIELNNGETIHIDSPSAMPPVNNIKEMREPIAECNILLPQEYMGNVITLCIEKRGVQTNMVYHGKQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYGFKRFETSEMVRLDIMINGERVDALAIITHKENAQYRGRQVVEKMRELIPRQMFDIAIQASIGNQIIARSTVKALRKDVTAKCYGGDVSRKKKLLNKQKEGKKRMKSLGRVDVPQEAFLAILHVGKD
>LR134376.1|VEG97966.1|3872441_3872912_-|sigma-E-factor-regulatory-protein-RseC
MSEMSEELATVVAIDGQHAWVECERRSACSGCHQQSNCGTGTVAKAFPLKSQRLRVALTAEVMVGQQIRLGILQASILRGAALVYVLPLFCLLLGALLGQLWLAPLLSAGEGVTILSCLLGGTIGFLLVRYFSARLEQGEYGPRMLGVVLNTRHLS
>LR134376.1|VEG97967.1|3872993_3873974_-|sigma-E-factor-regulatory-protein-RseB
MRQSSRILLASLLLICAKASADELSAEALLQQMQSAVSQQNFELSMVKARQGRLEPIRFSHGVIDGKEVAHLSYLDGKTVEYLQRQNEYTFFENTHEPYTLKGARFPGVWSTLVKMPLPRVLESYDPVLAGRSRVAGLVAQVVRLVPKETDKYGFVLWIDEQSHLLLRVDMVDREGSLVEQVLGVDLDRQSAPAPWLVTLVNSKLPEALELEDAYPAPQQTLNWHLTWLPAGFKVLSQDRHQLVSTSLPVDYMMLSDGLVDLSVYVARVDPKQAVRQQLIRQGATSLVSYVNEVGVEITVVGEVPAETAKRIAESVQPLARNEAVQ
>LR134376.1|VEG97968.1|3873995_3874580_-|sigma-E-factor-regulatory-protein-RseA
MANQEQLSALMDGDLSDVEVLNELGTDPALQDTWARYHLIGDAMRGDLPVNLQLDLSDSIMLALEDEPTILAPKPVQPAAPQVHRAKVLPLLRRVSQQVGQYAIAASVAAAVIFGVQQYQGQDGMPANPVLNTIPVGGSATPVSVHYPQDGNRATTRQQGLNEQQMQEQRERINAFLRDHQLQQRLLQDKQIQE
>LR134376.1|VEG97969.1|3874603_3875185_-|RNA-polymerase-sigma-factor-RpoE
MSDQNLLDEQLVERVQRGDKNAFNLLVKKYQHKVVNLVARYVNNPGDVPDVAQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLTSQGRRPPSSDVEADEAEYYGGGEALQEVATPENLALTDEIKRTVFAAIEALPEDLRTAITLRELEGLSYEEIAEIMDCPVGTVRSRIFRAREAIDKKLQPLIEN
>LR134376.1|VEG97970.1|3875366_3876974_+|L-aspartate-oxidase
MKASVEYLCDVLIIGSGAAGLSLALRLADQAKVLVLSKGPISEGATFYAQGGIAAVFDETDSIESHVSDTLNAGAGLCDPAVVEFTARNARDSIQWLIQQGVPFDQEEDAEGESHYHLTREGGHSHRRIFHAADATGKAVQLTLIDQVRAHPNIRLMERFNAVDLITTRKLNLPGNKVLGAYVWNRNVEQVEVIRARFVALATGGASKVYQYTSNPDVSSGDGIAMAWRAGCRVANLEFNQFHPTSLFHPDDPNFLLTEALRGEGAYLRRPDGSRFMLDFDERAELAPRDIVARAIDHEMKRLGADCMYLDISHKPADFIIKHFPTIHERCLAVGIDITKEAMPIVPAAHYTCGGVMIDGSGQTDIPGLYAIGEVTYTGLHGANRMASNSLLECVVYAHQAGADILAKLPMSVEPPKLPAWDESQVDDSDEQVVIQHNWHELRLMMWDYVGIVRTNKRLARAKRRIDLLKQEVQEYYANFRVSNNLLELRNLLQVAELIVNCALQRKESRGLHYNLDYPEMQPDPKPTVLTPDRE
>LR134376.1|VEG97971.1|3877047_3877434_-|Uncharacterised-protein
MRVVMPVIVSRRQRLLLLMLFLLLLWPTASLIRGWQWGLFLPCWLMGLWLAWRRVMLIRGELIWDGEWLEWQGRRYRLGARCRILPGVLWLRLREGELPELSLWLCSDALAPAHYRALARAIHLNPPR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2336597 : 2347713

Hokovirus(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG96612.1\|2336597_2340542_-	virulence sensor protein BvgS	A0A1V0SGX0	Hokovirus	2.4e-31	36.3
VEG96613.1\|2340578_2340875_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.0e-11	35.6
VEG96614.1\|2340878_2343266_-\|tRNA	phenylalanyl-tRNA synthetase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.4e-05	25.0
VEG96615.1\|2343278_2344262_-\|tRNA	phenylalanyl-tRNA synthetase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	6.9e-36	38.2
VEG96616.1\|2344575_2344932_-	50S ribosomal protein L20	NA	NA	NA	NA
VEG96617.1\|2344946_2345144_-	50S ribosomal protein L35	NA	NA	NA	NA
VEG96618.1\|2345232_2345622_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.4e-10	38.7
VEG96619.1\|2345784_2347713_-\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	2.8e-126	37.7

DBSCAN-SWA_2

2820047 : 2905094

110

Aeromonas_virus(51.35%)

terminase,holin,head,plate,portal,tRNA,capsid,tail,integrase

attL 2837378:2837398|attR 2873088:2873108

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG96999.1\|2820047_2821424_-\|tRNA	cysteinyl-tRNA synthetase	H2EDD6	Moumouvirus	1.1e-44	31.9
VEG97000.1\|2821627_2822125_+	peptidyl-prolyl cis-trans isomerase B	NA	NA	NA	NA
VEG97001.1\|2822114_2822750_+	HIT family protein	NA	NA	NA	NA
VEG97002.1\|2822784_2823513_+	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA
VEG97003.1\|2823626_2823875_+	putative transglycosylase associated protein	NA	NA	NA	NA
VEG97004.1\|2823986_2824274_-	antibiotic biosynthesis monooxygenase family protein	NA	NA	NA	NA
VEG97005.1\|2824494_2824704_+	Uncharacterised protein	NA	NA	NA	NA
VEG97006.1\|2825062_2825770_-	Bacterial Ig-like domain (group 2)	NA	NA	NA	NA
VEG97007.1\|2826911_2827124_+	Uncharacterised protein	NA	NA	NA	NA
VEG97008.1\|2827214_2827460_+	Uncharacterised protein	NA	NA	NA	NA
VEG97009.1\|2827495_2827654_+	Uncharacterised protein	NA	NA	NA	NA
VEG97010.1\|2827831_2828194_-	Uncharacterised protein	NA	NA	NA	NA
VEG97011.1\|2828221_2829277_-\|integrase	phage integrase	A5X9F3	Aeromonas_virus	2.4e-111	58.0
VEG97012.1\|2829330_2830494_+	modification methylase DdeI	A0A0R6PG08	Moraxella_phage	7.5e-106	56.0
VEG97013.1\|2830462_2832424_-	High temperature protein G	NA	NA	NA	NA
VEG97014.1\|2832451_2832889_-	phage repressor	A0A1I9KG86	Aeromonas_phage	8.6e-39	57.4
VEG97015.1\|2833268_2833457_+	phage transcriptional regulator, Cro-like protein	F8TUK2	EBPR_podovirus	2.4e-06	47.3
VEG97016.1\|2833477_2833735_+	regulator for prophage	Q1I116	Pasteurella_virus	1.6e-08	45.0
VEG97017.1\|2833739_2834261_+	phage protein	A5X9F7	Aeromonas_virus	2.8e-60	71.1
VEG97018.1\|2834274_2834727_+	Uncharacterised protein	A5X9F8	Aeromonas_virus	3.0e-63	82.4
VEG97019.1\|2834792_2834981_+	Uncharacterised protein	NA	NA	NA	NA
VEG97020.1\|2834983_2835244_+	phage transcriptional protein	NA	NA	NA	NA
VEG97021.1\|2835240_2835696_+	Uncharacterised protein	A5X9G2	Aeromonas_virus	1.3e-21	56.5
VEG97022.1\|2835692_2835950_+	Uncharacterised protein	A5X9G3	Aeromonas_virus	4.9e-10	46.3
VEG97023.1\|2835946_2838214_+	phage protein	A5X9G4	Aeromonas_virus	0.0e+00	79.5
2837378:2837398	attL	NA	NA	NA	NA
VEG97024.1\|2838210_2838429_+	Uncharacterised protein	A5X9G5	Aeromonas_virus	9.8e-20	69.4
VEG97025.1\|2838807_2839980_-	Uncharacterised protein	NA	NA	NA	NA
VEG97026.1\|2840357_2840963_-	Uncharacterised protein	NA	NA	NA	NA
VEG97027.1\|2841489_2841741_-	phage transcriptional activator, Ogr/Delta	A5X9H0	Aeromonas_virus	7.1e-38	89.2
VEG97028.1\|2841799_2842816_-\|capsid,portal	phage capsid portal protein	A5X9H1	Aeromonas_virus	2.7e-184	92.3
VEG97029.1\|2842812_2843778_-\|terminase	phage terminase ATPase subunit	A5X9H3	Aeromonas_virus	1.2e-186	96.6
VEG97030.1\|2843752_2844280_-\|terminase	phage terminase ATPase subunit	A5X9H3	Aeromonas_virus	2.6e-58	67.3
VEG97031.1\|2844456_2845299_+\|capsid	phage capsid scaffolding protein	A5X9H4	Aeromonas_virus	8.3e-99	71.6
VEG97032.1\|2845308_2846361_+\|capsid	P2 family phage major capsid protein	A5X9H5	Aeromonas_virus	1.7e-170	85.5
VEG97033.1\|2846364_2847093_+\|terminase	phage small terminase subunit	A5X9H6	Aeromonas_virus	1.0e-132	95.9
VEG97034.1\|2847207_2847669_+\|head	phage head completion protein	A5X9H7	Aeromonas_virus	1.3e-69	93.5
VEG97035.1\|2847665_2848145_+	phage protein	A5X9H8	Aeromonas_virus	3.3e-52	92.5
VEG97036.1\|2848185_2848872_+	phage protein	A5X9H9	Aeromonas_virus	2.4e-112	91.2
VEG97037.1\|2848876_2850001_+	phage protein	A5X9I0	Aeromonas_virus	6.4e-179	82.9
VEG97038.1\|2850004_2850460_+	phage protein	A5X9I1	Aeromonas_virus	6.8e-71	84.1
VEG97039.1\|2850463_2850673_+	phage protein	A5X9I2	Aeromonas_virus	1.2e-19	71.2
VEG97040.1\|2850698_2851010_+\|holin	phage holin	A5X9I3	Aeromonas_virus	3.5e-26	58.4
VEG97041.1\|2851011_2851491_+	Uncharacterised protein	A0A1I9KFD8	Aeromonas_phage	3.1e-66	71.7
VEG97042.1\|2851487_2851919_+	phage protein	NA	NA	NA	NA
VEG97043.1\|2852042_2852306_+	phage protein	A5X9I7	Aeromonas_virus	3.7e-29	75.0
VEG97044.1\|2852500_2853961_+\|tail	phage tail length determinator	A5X9I9	Aeromonas_virus	6.5e-200	91.0
VEG97045.1\|2853911_2854379_+\|tail	phage tail length determinator	A5X9I9	Aeromonas_virus	5.7e-33	49.4
VEG97046.1\|2854378_2854702_+	phage protein	A5X9J0	Aeromonas_virus	1.1e-51	95.3
VEG97047.1\|2854698_2855886_+	phage protein	A5X9J1	Aeromonas_virus	3.0e-203	91.5
VEG97048.1\|2855878_2856466_+	phage protein	A5X9J2	Aeromonas_virus	8.1e-101	90.6
VEG97049.1\|2856462_2858574_+\|tail	phage tail fiber-like protein	A5X9J3	Aeromonas_virus	5.7e-189	53.8
VEG97050.1\|2858589_2859012_+\|tail	phage tail fibre assembly protein	A5X9J5	Aeromonas_virus	2.0e-29	48.9
VEG97051.1\|2859113_2859890_+	phage protein	A5X9J6	Aeromonas_virus	8.5e-114	82.2
VEG97052.1\|2859886_2860435_+	phage protein	A5X9J7	Aeromonas_virus	1.2e-82	89.0
VEG97053.1\|2860431_2860872_+	phage protein	A5X9J8	Aeromonas_virus	1.5e-62	94.3
VEG97054.1\|2860838_2862041_+	phage protein	A5X9J8	Aeromonas_virus	4.0e-211	90.8
VEG97055.1\|2862715_2863489_+	Uncharacterised protein	NA	NA	NA	NA
VEG97056.1\|2863820_2864882_-\|integrase	phage integrase	A5X9F3	Aeromonas_virus	7.0e-111	58.4
VEG97057.1\|2864939_2865425_-	Uncharacterised protein	NA	NA	NA	NA
VEG97058.1\|2865990_2866743_-	prophage transcriptional regulator	A5X9F5	Aeromonas_virus	1.1e-54	46.1
VEG97059.1\|2866897_2867311_+	Uncharacterised protein	NA	NA	NA	NA
VEG97060.1\|2867344_2867860_+	phage protein	A5X9F7	Aeromonas_virus	1.4e-24	41.4
VEG97061.1\|2867871_2868129_+	putative phage transcriptional activator Ogr/Delta	NA	NA	NA	NA
VEG97062.1\|2868125_2868344_+	Uncharacterised protein	NA	NA	NA	NA
VEG97063.1\|2868359_2868803_+	Uncharacterised protein	NA	NA	NA	NA
VEG97064.1\|2868865_2869051_+	Uncharacterised protein	NA	NA	NA	NA
VEG97065.1\|2869047_2869365_+	Uncharacterised protein	A5X9G2	Aeromonas_virus	2.7e-42	81.4
VEG97066.1\|2869361_2869583_+	Uncharacterised protein	NA	NA	NA	NA
VEG97067.1\|2869582_2870020_+	Uncharacterised protein	NA	NA	NA	NA
VEG97068.1\|2870016_2871597_+	DNA (cytosine-5-)-methyltransferase	A0A1I9KFD6	Aeromonas_phage	1.7e-209	78.2
VEG97069.1\|2871593_2873987_+	phage replication initiation protein A	A5X9G4	Aeromonas_virus	3.9e-101	35.0
2873088:2873108	attR	NA	NA	NA	NA
VEG97070.1\|2873976_2874315_+	Uncharacterised protein	NA	NA	NA	NA
VEG97071.1\|2874836_2875175_+	Uncharacterised protein	NA	NA	NA	NA
VEG97072.1\|2875189_2876467_-	protein UmuC	F1C5A5	Cronobacter_phage	2.1e-130	56.8
VEG97073.1\|2876463_2876886_-	peptidase S24-like domain-containing protein	A0A1W6JNS2	Morganella_phage	1.7e-31	50.4
VEG97074.1\|2877127_2877760_+	Uncharacterised protein	M1PSB6	Streptococcus_phage	4.9e-27	33.2
VEG97075.1\|2877763_2877904_+	Uncharacterised protein	NA	NA	NA	NA
VEG97076.1\|2878230_2878863_+	P22AR C-terminal domain	H6WRU8	Salmonella_phage	2.1e-30	43.1
VEG97077.1\|2879052_2880093_-	Uncharacterised protein	NA	NA	NA	NA
VEG97078.1\|2880798_2881842_-	Portal vertex-like protein	A0A077K9Q8	Ralstonia_phage	4.6e-115	59.8
VEG97079.1\|2881838_2883557_-\|terminase	phage-related terminase	A0A1S6KZW3	Salmonella_phage	4.3e-235	69.2
VEG97080.1\|2883757_2884579_+\|capsid	phage capsid scaffolding protein	F1BUR1	Erwinia_phage	3.3e-60	48.7
VEG97081.1\|2884590_2885643_+\|capsid	phage-related capsid protein	E5G6M6	Salmonella_phage	2.7e-107	55.6
VEG97082.1\|2885652_2886336_+\|terminase	phage P2 small terminase subunit gpM-like protein	A4PE31	Ralstonia_virus	3.6e-44	45.8
VEG97083.1\|2886442_2886913_+\|capsid	phage P2 capsid completion gpL-like protein	E5E3S2	Burkholderia_phage	9.2e-31	50.6
VEG97084.1\|2886912_2887116_+\|tail	tail protein	A0A2H4J946	uncultured_Caudovirales_phage	3.1e-15	59.1
VEG97085.1\|2887118_2887349_+	phage protein	A0A1S6L007	Salmonella_phage	3.2e-05	38.0
VEG97086.1\|2887364_2887733_+	putative phage-related transmembrane protein	NA	NA	NA	NA
VEG97087.1\|2887735_2888077_+	Protein of uncharacterised function (DUF754)	NA	NA	NA	NA
VEG97088.1\|2888073_2888895_+	Gp28-like protein	A0A2H4JGJ9	uncultured_Caudovirales_phage	5.9e-65	51.1
VEG97089.1\|2888884_2889358_+	putative LysB-like protein	E5FFH9	Burkholderia_phage	1.0e-08	36.8
VEG97090.1\|2889468_2889939_+\|tail	putative tail completion-like protein	A0A077K8R3	Ralstonia_phage	7.6e-33	50.4
VEG97091.1\|2889920_2890379_+\|tail	phage P2 essential tail completion gpS-like protein	A0A0M3UL83	Salmonella_phage	6.0e-27	45.9
VEG97092.1\|2890628_2890955_+	Uncharacterised protein	NA	NA	NA	NA
VEG97093.1\|2891935_2892583_+	phage regulatory protein, Rha family	Q8H9L9	Vibrio_phage	6.3e-30	63.9
VEG97094.1\|2892731_2893259_+	Uncharacterised protein	NA	NA	NA	NA
VEG97095.1\|2893476_2893758_+	Uncharacterised protein	NA	NA	NA	NA
VEG97096.1\|2894367_2894919_+\|plate	phage baseplate assembly-like protein	F1BUP5	Erwinia_phage	2.4e-22	44.0
VEG97097.1\|2894915_2895275_+	putative phage-like protein	A0A1S6KZZ4	Salmonella_phage	5.4e-23	52.2
VEG97098.1\|2895271_2896171_+\|plate	phage P2 baseplate assembly gpJ-like protein	Q9ZXK8	Pseudomonas_virus	9.2e-88	56.8
VEG97099.1\|2896167_2896800_+\|tail	tail fiber protein	A0A0F7LA36	Escherichia_phage	2.4e-66	60.6
VEG97100.1\|2896799_2897951_+\|tail	putative bacteriophage tail fiber protein	A0A2I8TVA9	Erwinia_phage	2.3e-67	49.5
VEG97101.1\|2897950_2898571_+\|tail	putative tail fiber assembly protein	H9C0Y3	Aeromonas_phage	8.2e-35	39.8
VEG97102.1\|2898758_2899937_+	putative phage-like protein	F1BUU3	Erwinia_phage	8.0e-132	60.5
VEG97103.1\|2899946_2900465_+	protein FII	E5G6P8	Salmonella_phage	1.7e-49	55.8
VEG97104.1\|2900531_2900846_+\|tail	phage P2 GpE-like tail protein	A4PE51	Ralstonia_virus	2.2e-12	46.0
VEG97105.1\|2900854_2900986_+	Phage P2 GpE	NA	NA	NA	NA
VEG97106.1\|2900982_2903430_+\|tail	phage tail tape measure protein, TP901 family	A0A2H4JGB2	uncultured_Caudovirales_phage	3.2e-143	42.4
VEG97107.1\|2903442_2903934_+	Phage protein U	Q9ZXJ9	Pseudomonas_virus	6.5e-35	52.7
VEG97108.1\|2903933_2905094_+	Phage protein D	A0A1S5NV58	Burkholderia_phage	4.8e-97	55.4

DBSCAN-SWA_3

3044295 : 3053636

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG97229.1\|3044295_3045609_-	perosamine synthetase, Per protein	H8ZJ36	Ostreococcus_tauri_virus	1.0e-50	35.9
VEG97230.1\|3045752_3046832_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	3.6e-14	23.8
VEG97231.1\|3046831_3047605_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
VEG97232.1\|3047617_3048592_-	FMN reductase	NA	NA	NA	NA
VEG97233.1\|3048595_3049249_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	5.9e-52	57.5
VEG97234.1\|3049205_3050084_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.1e-104	63.8
VEG97235.1\|3050214_3051102_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.2e-26	34.1
VEG97236.1\|3051101_3052187_-	dTDP-glucose 4,6 dehydratase	I7HTA3	Enterobacteria_phage	2.6e-97	52.2
VEG97237.1\|3052952_3053636_+	transcriptional regulatory protein PhoP	W8CYM9	Bacillus_phage	9.0e-27	32.4

DBSCAN-SWA_4

3840947 : 3850905

uncultured_Mediterranean_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEG97938.1\|3840947_3842804_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-34	32.6
VEG97939.1\|3843026_3844814_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.0e-74	41.4
VEG97940.1\|3844903_3845347_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.5e-27	48.6
VEG97941.1\|3845362_3845578_-	30S ribosomal protein S21	NA	NA	NA	NA
VEG97942.1\|3845757_3846771_+	DNA-binding/iron metalloprotein/AP endonuclease	A0A0R6PI74	Moraxella_phage	8.2e-109	59.2
VEG97943.1\|3846857_3847841_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	8.4e-34	33.7
VEG97944.1\|3847887_3848934_-	lipoprotein NlpD	A0A0A7NU10	Lactobacillus_phage	2.5e-12	39.7
VEG97945.1\|3848943_3849525_-	DedA family membrane protein	NA	NA	NA	NA
VEG97946.1\|3849521_3850139_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.0e-34	46.4
VEG97947.1\|3850143_3850905_-	stationary phase survival protein SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.6e-69	53.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134376

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection