CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134384	Prevotella oris strain NCTC13071 genome assembly, chromosome: 1	13 crisprs	DEDDh,RT,cas3,PD-DExK,WYL,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6	15	9	0	2

1. LR134384

CRISPR-Cas detection and classification

Crispr_ID: LR134384_1

• CRISPR_ID: LR134384_1
• CRISPR_location: 151991-152058
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134384_1

Consensus_repeat	Method
GTCCACCCAAATGTCCACCCAATC	CRISPRCasFinder

spacers of LR134384_1

>1.1|152015|20|LR134384|CRISPRCasFinder
GATACATTTCGTTTTGCATT

CRISPR arrays and Neighbor proteins around LR134384_1

CRISPR arrays

The CRISPR arrays of LR134384_1

>merge|LR134384|1|151991-152058|CRISPRCasFinder
GTCCACCCAAATGTCCACCCAATCGATACATTTCGTTTTGCATTGTCCTCCCAATCGTCCACCCAAGT

>LR134384|1|1|151991-152058|CRISPRCasFinder
GTCCACCCAAATGTCCACCCAATC	GATACATTTCGTTTTGCATT
GTCCTCCCAATCGTCCACCCAAGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH14182.1|152837_154505_+|Formate--tetrahydrofolate-ligase-1	unknown	unknown	gnl|CDD|376511
LR134384.1|VEH14181.1|152200_152413_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14175.1|149221_149599_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14176.1|149711_149918_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14186.1|158037_159621_-|Glycolate-permease-glcA	unknown	unknown	gnl|CDD|224535
LR134384.1|VEH14173.1|146181_147096_-|cell-division-control-protein-6	unknown	unknown	gnl|CDD|379165
LR134384.1|VEH14188.1|162142_164911_-|TonB-linked-outer-membrane-protein,-SusC/RagA-family	unknown	unknown	gnl|CDD|274948
LR134384.1|VEH14185.1|157047_157953_-|Uncharacterized-BCR,-YitT-family-COG1284	unknown	unknown	gnl|CDD|224203
LR134384.1|VEH14187.1|160445_162131_-|SusD-family	unknown	unknown	gnl|CDD|369630
LR134384.1|VEH14189.1|164940_166779_-|SusD-family	unknown	unknown	gnl|CDD|369630
LR134384.1|VEH14183.1|154667_155912_-|Phosphoserine-phosphatase	unknown	unknown	gnl|CDD|319803
LR134384.1|VEH14177.1|149940_150177_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14172.1|145561_146182_-|DNA-repair-and-recombination-protein-RadB	unknown	unknown	gnl|CDD|214640
LR134384.1|VEH14171.1|145386_145557_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14179.1|151129_151237_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14180.1|151199_151787_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14184.1|155935_157036_-|tRNA-specific-2-thiouridylase-mnmA	unknown	unknown	gnl|CDD|234664
LR134384.1|VEH14174.1|147154_149209_-|Integrase-core-domain	unknown	unknown	unknown
LR134384.1|VEH14178.1|150318_151083_+|signal-peptidase-I	unknown	unknown	gnl|CDD|119397
LR134384.1|VEH14190.1|166791_169890_-|TonB-linked-outer-membrane-protein,-SusC/RagA-family	unknown	unknown	gnl|CDD|274948

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH14188.1|162142_164911_-|TonB-linked-outer-membrane-protein,-SusC/RagA-family	gnl|CDD|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
LR134384.1|VEH14186.1|158037_159621_-|Glycolate-permease-glcA	gnl|CDD|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	1.37934e-98
LR134384.1|VEH14173.1|146181_147096_-|cell-division-control-protein-6	gnl|CDD|379165	pfam13401, AAA_22, AAA domain.	1.13997e-19
LR134384.1|VEH14185.1|157047_157953_-|Uncharacterized-BCR,-YitT-family-COG1284	gnl|CDD|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	6.10743e-56
LR134384.1|VEH14183.1|154667_155912_-|Phosphoserine-phosphatase	gnl|CDD|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.75174e-101
LR134384.1|VEH14189.1|164940_166779_-|SusD-family	gnl|CDD|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	1.21932e-46
LR134384.1|VEH14172.1|145561_146182_-|DNA-repair-and-recombination-protein-RadB	gnl|CDD|214640	smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.	2.91083e-06
LR134384.1|VEH14182.1|152837_154505_+|Formate--tetrahydrofolate-ligase-1	gnl|CDD|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
LR134384.1|VEH14187.1|160445_162131_-|SusD-family	gnl|CDD|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	1.95599e-53
LR134384.1|VEH14184.1|155935_157036_-|tRNA-specific-2-thiouridylase-mnmA	gnl|CDD|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	1.0751e-134
LR134384.1|VEH14178.1|150318_151083_+|signal-peptidase-I	gnl|CDD|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	1.43413e-10
LR134384.1|VEH14190.1|166791_169890_-|TonB-linked-outer-membrane-protein,-SusC/RagA-family	gnl|CDD|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0

Protein sequences

>LR134384.1|VEH14180.1|151199_151787_-|Uncharacterised-protein
MRAAHKEGNMEQTFKISDEQWERLNDTTFRIVLERSDKLVASSLEQLRKSTDRAYTLFGFLLTVFSGITAYLIRCVDITVLLPCVVLWLGCGIATALMFSKAIWVHPFIHQGNQPRYLITKELIDAYKSNGAYQHTLLVSAIEENQYCYDYNSNILEKRAKVIKCVMKVIKATFLMVAVITILIKLAEYLNYPLN
>LR134384.1|VEH14179.1|151129_151237_+|Uncharacterised-protein
MAKEKDEEEKEKYPRPQTPDAVYTNSMDSSDIQPV
>LR134384.1|VEH14178.1|150318_151083_+|signal-peptidase-I
MGNFIERLQYYMSQSGINDNQMTVTAGLSVGLLGKAKNGGKGLSSVSIEKILLAYDDINPDWLLTGRGPMLKTKGSNQSCSVAEDTIPDHKDKKNKAIYPKKQEENSITEALLSEPSVSYTPSKGAPYYDVDFLGGFDLTFNNQTINPEYNIDFKPFNKPGVTWVNITGHSMEPKINHGDIIALKECRLEDVQYGEIYAVVLDTIRTVKILRKSNDPNRMRYVPINEENYDEQEYDNSRILRIFEVLGNISRFM
>LR134384.1|VEH14177.1|149940_150177_-|Uncharacterised-protein
MKTYFYASYKLNVNKADVCTIIKAQSQAQIKRAAIHLHENWSRFETYNEAFNYLMLNVTSLGAQVSYDDVRYYDVTNF
>LR134384.1|VEH14176.1|149711_149918_-|Uncharacterised-protein
MNKSLLDRVSVEKIDALVDALSGVISDMRITGENSEACFCNEAYWACYSLRNMMFTSLRHREQNRLGE
>LR134384.1|VEH14175.1|149221_149599_-|Uncharacterised-protein
MEKKIYVSDKAKTQLCKIFSCSKMMVWLALNFKRESDLARKIRYTALTQFGGVPSWKPEEMETTHEEVEKTMTQRYGERVKLVYDRNDGSTHVLIDGKETRVEHNLDVPSFMALQNEVEIMAMSL
>LR134384.1|VEH14174.1|147154_149209_-|Integrase-core-domain
MEYFNKILCVTYAELTGGGEAIIKGDTLLKNVTRGNIVSVHRGGGEGSQALYAWNSIPQKYRKLYMERYGDPEQRMKEAMMRDRIKLDSEAREWYEAFTYEKNGRAEHLTGELIEEYTINASVLGELQKMMAQRQALRQSLNGSMAGAWEVICQSSEALREEYHHTLPKHIVRLKAKIKAFKADGYRSLISGKVGNLNTIKITPEFGQLLIALKRCRVPVYTDAQLFEEANRQAEANGWKPLKSLSGLKRWLNSAAIMPLWYDAVYGEQAARQKFGRKHRTAQPTKRDALWYGDGTKLNLYYQDEEGKVRTTQVYVVIDAMSEVMLGWHISDSEDYEAQYLAYRMAIQTSRHKPYEIVHDNQGGHKKLDAEGLFKKLCHVHRTTQPYNGESKTIEAVFGRFQQQVLHKDWRFTGQNITAKKMSSRPNLEFIEENKDSLYTLEELKDAYAKATKEWNEMAHPAYGKSRQEAYDNSVNEETQQVTAHDMVDMFWVTAKRMSTFTDQGISVTIKKEKRQYEVMSEPGVPDHEWRRQHTYERFVVKYDPYDFGSVRLYKKEADGSLRFERVAEPYVVIHRAIQEQTEGEAAFIRQQQAANTTDRIERTVAGREIEKAHGVMPEQHGLRSPKPKGMTAAERRQIERRTGIYSKAPEEYKIGRKTKQVSLEDWSKVETAVVDMAYVAGKS
>LR134384.1|VEH14173.1|146181_147096_-|cell-division-control-protein-6
MSKLTNKEKSQIQECLKQYVSKYPSQNKAAQSLVGTSSATVSSILQGKWENISDDMWRNLASQLGTTSGNDWQVVETKAFQEMALVMKDAQAVRNVTWIVGEAGCGKTTTARLYANENNEVFYILCSEDMKKSDFVREIARRIGQRTEGYSIRELLDRIIDDLIQMEAPLLLFDEADKLPERVFHYFIDLYNRLEDKCGIVFFSTSYIKRRMTMGLRYNKCGYNEIHSRIGRKFYELEQTAPHDVYAICMANGVTDKGRISEVVKDAEEYEFDLRRVKKNIHRVKLMAAQTAKNQRLNSDKTAG
>LR134384.1|VEH14172.1|145561_146182_-|DNA-repair-and-recombination-protein-RadB
MNRAMSVTDMLRMKKETYPFEGEWADAFGAPERGGVWFIWGRSGSGKTSFTMKLCKELAKYGKIAYNSLEEGFSLTMKNALIEAGMQDVARRFILISESMKDLDGRLKKHKSPDIIVIDSFQYTQMSFKDYQKFKNRHRDKLLIFISQAEGNKPSGRTAVSVMYDAALKIWVEGYRAISKGRYFGSKGYYTIWEERANIYWGETKE
>LR134384.1|VEH14171.1|145386_145557_-|Uncharacterised-protein
MANKRDNLLYRLRKKGVQANTRERVIFFGVGGEPFKLIQIRRLCREFHFNVQLVIQ
>LR134384.1|VEH14181.1|152200_152413_-|Uncharacterised-protein
MTKVIHVQLMQGRKNYYFGSIPAIYSVLTAEEIGIKQCSLERVGLSKGGVVLNKKACIRAGELIRSKATK
>LR134384.1|VEH14182.1|152837_154505_+|Formate--tetrahydrofolate-ligase-1
MKTELEIARECQLQSIERIAEKIDIPTEELENYGKYIAKVPLKLIDEKRVKKSNLILVTAISPTKAGIGKTTVSIGLSMAMNRLGHKSVLALREPSLGPCFGMKGGATGGGYAQVLPMDRINLHFTGDFHAITSAHNMIAALLDNYLYQHHEEGFALKDVLWRRVLDVNDRNLRCITTGLGAKTNGLLSESGFDITPASEIMAILCLATDEEDLRRRIDNVLLGITLDDNPFCVKDLGIGGAMTVLLRDALNPNLVQTIEGTAAFIHGGPFANIAHGCNSILATKMAMSFGDYVVTEAGFGADLGAEKFLDIKCRKAGIQPRLTVLVATIMGLKMHGGMQVGDPENGCCEHIRKGLENLDRHIANMQHMGQRVIVTLNRFGNDTEEEITVVSEHCEKLGIGFAVNEAYMKGSEGCMDLAQLAIDEIAAHPSEDIAYCYTDEANVKDKITAVAKQVYGAKQVVFKKQALEMLERIAKWNLERYPVCIAKTQYSLSDDAKRHGVPKDFTFTIRDLVINMGAEMIVAIAGDIMRMPGLPRHPQAERIDIQDGLLIGLE
>LR134384.1|VEH14183.1|154667_155912_-|Phosphoserine-phosphatase
MENIEGKEEQILIRITGQDRPGLTAAVMGILARYNARILDIGQADIHSTLSLGILIRIDDTHSGQVMKELLFKAEELNVNIGFAPISDDEYESWVDHQGKNRYILTVIGRSLSAKQIAAATKIIAEQGLNIDFIRRMTGRMSIKHPERNVRACIEFSLRGTPKDRELMQSKLMHLASEQEIDFSFQRDDMYRRMRRLICFDMDSTLIQTECIDELAARAGVGDKVKAITERAMRGEIDFKESFTERVALLKGLDVSVMQDIAEHMPITEGADRLMSVLKRCGYKIAILSGGFTFFGEQLRRRYGIDYVYANELEIDENGKLTGRYVGDIVDGKRKAELLKLIAQVEQVNLAQTIAVGDGANDLPMIAEAGLGIAFHAKPRVKATAQQSINNIGLDGVLYFLGFKDSYLGEQGKL
>LR134384.1|VEH14184.1|155935_157036_-|tRNA-specific-2-thiouridylase-mnmA
MINYDEIKDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMIGPEEKEEWDCTSEEDLEMATALTNRFGCQLKVIDCHKEYWSQVTRYTMDKVKAGFTPNPDVMCNRLIKFGAFDEKIGHDYDLIATGHYAQTEWIEGRKWLTTSPDPVKDQTDFLAQIYGWQLRKAIFPIGHFEKNEVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRYLGESVGDVIELETGKKIGEHKGLWFHTIGQRKGLGFGGGPWFVVKKDVERNILYVSHGYDPEMAYKQDFKIHDFHATTYCPEGTALPELPERITFKIRHTPEYLPATLERTGENTYVIHADNKIHGVAPGQFCVVYDAQHHYCYGSGEITL
>LR134384.1|VEH14185.1|157047_157953_-|Uncharacterized-BCR,-YitT-family-COG1284
MKKIDRKLVRGCYDYLIIALAMVVGSLGWVVFLLPHKITIGGLPGISSVVFWATGIHVQYTYLGINILLLAAALKVLGLKFCVKTIYAVSVFTLFTTLWQGVVGDKVMFSKEPFLACVVGGLLLGLSTGFSLLRNGSTGGSDVIAAIVHKYKDISLGHIILMCDLCVITSSYLVIGSWEKVIYGYIVLFVMSYTVDHVINGFRRSVQFFVISEKYQEIGRLINNEANRGCTVIDAHGFYTGKKMGMLFIIAKQNESHNIFRIIDDVDPEAFVSQSAVSGVYGLGFDRMKVGKKHLSKMNKV
>LR134384.1|VEH14186.1|158037_159621_-|Glycolate-permease-glcA
MSAILSVIPVILLFVLMLGLKLAGHKSAVITLCVTIILALVAAPQLGMLPDAFKASGIFEVVGWSIVEGMLKAVFPILIIILMAIYSYNILVESRQIEVIKRQFTAITSDKGILVLMLVWGFGGLLEGMAGFGTAVAIPAAILIGLGFKPMFSALVALIGNTVATGFGAVGVPVTTLCNEVAPGGAAPVEAICETSSFAVIQLAPLFILLPFIILTLTDRKAIVKNIILSLWVGGISVVVQYLCAHFLGSETPAIIGSVAAILAILLYVKLFDRKGREGLPTARYSLGETFKAWSVYLFILLLILVSGALCPPVNDFLKSHLVSKVAIPVIGSTFKFGWISNAGLMLFLGATIGGLIQGLSFGRMMRILARTTVNLKNTIITIICLISLASVMNYSGMISAIASGLVAITGGFYPFFAPLIGAVGTFVTGSDTSSNILFAKLQANVAGQLGLTGHSTFYGVPGTETNWLVAANTTGATGGKMISPQSIAIATAACDMQGRDGEILRSALPYAIGYIALGGLMVFLGL
>LR134384.1|VEH14187.1|160445_162131_-|SusD-family
MKHIKITTLLVVTVSMFASCDFLNTSESTYYDRSELLYDPSKVTQLCTEVYSYLPNGLEGIGGAMHDAATDDAIHINNTAAIQRFVNGSWSPNYVVDDVFAHYYKAIHDANFYLENCLGLTFEDWKYTDGFQDTYTSYLNYQYEVRCLRAFYYFELVRRYGNIPLITKTLTKEDAKKAEPISAENVLRFVIDECTDVAQHLPVKTTTLPGGAANMQRVSKGVALALKSRATLYLASPLFNTSGDVAKWEAAATAAFDVIRQASAFGYALDDDYKNLFGATNNQSAEVILCRPEGKTTHFESANYPIGVEKGLGYTCPTENLVSAYEMSDGSSFDWNNPVQAANPYKNRDPRLQMTVVFNGMQWPAKTPVETYHGGRNGQPLLNATTTGYYLKKYLNNKVIFEAGKNTNSFDHNWILFRYAEILLNYAEAMAEAYGPDQVVSPFTMSAREAVNLVRSRKNVKMPKFPTGMSKADFLARLRNERRVELAFEGYRFWDLRRWKALGDMKDIYKVNIEKRADGTLTFAKEKLCTYEITDKMYFYPISNAERYKNTNLKQNPGWGE
>LR134384.1|VEH14188.1|162142_164911_-|TonB-linked-outer-membrane-protein,-SusC/RagA-family
MNYKLYFAALLFSPLCMSAQTDSLLTEKKPHRITYGRDVSVDQKEATVAASFITSEKLAHRKETNPRNALYGLIPGLEVLQNQGAAWETTGRLFVRGNGTLSKKAPLVLVDGFERELGQLSMDEIESITVLKDAASTALYGMRGANGVIAVKTKRGMNGAPKIKFSYELSMATPFRKPKFVDGHTYAMALNEGMKNDGLTPRYDVSELSAFKDGSLPDAYPNVDWWGESLRNHSFGNNVTFSVTGGGKFVRYFTQLNYLNDSGILRPVNDNQGYSTQLKYSKLNIRTNLDIELGRNTMLQLNMFGTFSEHNRPNATISDIFTALYKVPSGAFPIKNARGVWAGTTDIETNPVAMISGTGYARSQQRNFFADLKLTHRLDFLLKGLSVGLQLGLDNNASYWDGNARKYGYEQSTYDWASRSYTYKNLRNETALSASHSVGASNNHFNFNAFANFQRDWDLHSLAATAQYRMDKLIAKGQNTSYAFIDIVSQLHYAYKHRYLFDVSLSESASSILDPKSRWGVFPAAGIGWIVSEETFAKRDWLDFLKLRASYGISGGADYDNDLFIDMYGNGGSFFFGKNPLKHNGLRLTQLGISNLTYEKSHKLNIGFDFRAFKHLDVTVDFFYDHRTDILVDANGKVSSLFGLPVPKENSGVVDNRGIETSIRWNKSLKDFHYALGSTFSFIRNKIVNQNEEYRPYGYLQRTGKRIGQYFGYVVEEIYQNQNEIDQRNVKQTLSQVKPGDLKYKDLNNDGIIDSYDQKALGYSAFPEIYYSFDLNLDYKGWGLYAMFQGIGNVSVMANMPSVYHPLFGNRTISKEYYDNRWTPETPNARYPRLTSVGSVNNYANNSLWIKNGAYFKLRTLEVYYHFKKHQLKPLKYVNAAKVYVRAYDLFSLDHIKVMDPENMKTGHPSMTRYAVGFDLKF
>LR134384.1|VEH14189.1|164940_166779_-|SusD-family
MEKMNKIWSLFAGLMLTMSIVSCEDLAFGERFLQKPPSTDVTIDTIFGKAEYARRVLWRSYQYLPYGMETNGFWTQMCMSTIEGLTDLNYDNIGYSALSNTYYPGLYNASIEDNTRINAHRTKMQFSQSGIWTGVRHAWLLYENVDKVPDMDEQEKSRLKAEAKMMVAVFYAHMLRHYGSLPIIDHAISADDASFPARATLQQTVDFIVKLLNDAIACEDFPWSVPENEMENWDGRMTKAGAMALKTRVLLFVASPLFNSDAPFAKGEASDKKMTWWGNYDKQRWKQAVDACKEFFDALNKNGFFKLVQAGDHGITTEREAYTSAYFDRGNTETLISCRRTFLCTKNNGQFDKALRWGAYCPTKEFFDMFEMKDGRPFDWKNPKMAKNPFKDRDPRLYENFILDGDKYNGRTAAMTDVNPKDKANYPKGKDWEQGRMHKLSLATGLACRKWGLDRNTEAYNRPVQWPTMRLAEVYLNYAEALNEYYDGPTPEAYQAINTVRARVGMPALSGMSKEDFRKAVLHERAVEFAYEEVRFFDLIRWKMYDVFETPLHGLHVYKHKKTKEYLIKPFALTKYYRAWWKTGWEPRMCLSAFPSKEVNKGYGLVQNPGWE
>LR134384.1|VEH14190.1|166791_169890_-|TonB-linked-outer-membrane-protein,-SusC/RagA-family
MFMLLLSFVPTIPMYALKTEKTEQSDRTIDLYGTVFDDMGAIIGASVKVVGSKTATVTDVNGAFHLRVPLGAKLEISSVGYKSKTVVCKGEGRLKVKLEEQTVALDDVQIIAYGSTRKVTVTGALSSVNSDELTKSPVASMSNSLIGKVSGLSGIQSSGQPGADGAQLFIRGVGSLSTSLSQPLILVDGVERPFSQIDPNEVEDVTVLKDASATAVFGVRGANGVILVTTKRGTKDRPRISFTTSVGFQVPSRVPDFANSYEWATQYNKAQAHDGVAEDMLTFKPDDLEKFRTHSSPLTHPDVDWTGEMIRKAAVQSRHNIHISGGTNRVRYFASLGVLTQEGLFKVYKNRNDKGFKYNRYNYRINLDVDLTRTTTAQINLGGYLNSRREPNYNNGSTKSSDFIFRDLYSAVPFSGAGLVDGKRIRMSSNRFAIGELQDGLNIYYGKGYNTTANNTLNFDFTLKQKLNFLTKGLSFHVKAAYNSGVSIYKRREGREPLYEAINAPDGSVALKLVETYRKLDFSESDGLSKNWYLEGAFNYKRNFGQHHVSALAMYNQTMKYYPSSSYADIPRSYVGLVGRATYDYMTRYLLDLSVGYNGSENFAKGRRFGVFPAGSVGWIVSEEKFFKPLRSVVDYLKFRVSYGKVGNDITRDNSRFLYLPDTYNISSGSYSFGTTTNTKILGASEGKIGNPNVTWETAFKQNYGIDMKLFKNNLSINFDYFIEHRRDILISRGVIPGYLAVQLPTMNMGKVNNHGFEVSMRWQDKIRSARYYIGGNISYAKNKVVFMDEIKYPYEWMQRTGKPVGQNFGYVFDGYFTEAEVAEYEHTKGTEGGIPDQGSGYVPLPGDVKYKDLNGDHKIDEKDIRDIGSPAYPLLTYAVNMGVSWKGFDLSITLAGASKTSRFLSGPYRIPFGEMNNWSLMRYMINDAWTPEKGNAAAAPAISLRNKSHNYLDSDLWLRNASYIRLKNIEVGYSFAKNVTRALHLNSLRLAVSGYNLLTFDHLKVCDPEANPNGRAYPLIKVIEVGLKVGF

Crispr_ID: LR134384_2

• CRISPR_ID: LR134384_2
• CRISPR_location: 203218-203316
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134384_2

Consensus_repeat	Method
CACTTCAAGGAGTTGTTTGCTTAAGATTGAAAT	CRISPRCasFinder

spacers of LR134384_2

>2.1|203251|33|LR134384|CRISPRCasFinder
TTTAATAATCTTACATTCTGTAATTTAATTATC

CRISPR arrays and Neighbor proteins around LR134384_2

CRISPR arrays

The CRISPR arrays of LR134384_2

>merge|LR134384|2|203218-203316|CRISPRCasFinder
CACTTCAAGGAGTTGTTTGCTTAAGATTGAAATTTTAATAATCTTACATTCTGTAATTTAATTATCCACTTCAAGGAGTTGTTTGCTTAAGATTGAAAT

>LR134384|2|2|203218-203316|CRISPRCasFinder
CACTTCAAGGAGTTGTTTGCTTAAGATTGAAAT	TTTAATAATCTTACATTCTGTAATTTAATTATC
CACTTCAAGGAGTTGTTTGCTTAAGATTGAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH14221.1|208025_208814_-|Glucosamine-6-phosphate-deaminase	unknown	unknown	gnl|CDD|179028
LR134384.1|VEH14223.1|210540_212085_+|Alpha-L-fucosidase	unknown	unknown	gnl|CDD|226195
LR134384.1|VEH14212.1|195707_197393_-|Sialidase-precursor	unknown	unknown	gnl|CDD|271234
LR134384.1|VEH14224.1|212278_214876_+|Alpha-L-fucosidase	unknown	unknown	gnl|CDD|376628
LR134384.1|VEH14220.1|206037_208026_-|Glucosamine-6-phosphate-deaminase-1	unknown	unknown	gnl|CDD|235005
LR134384.1|VEH14208.1|190115_191093_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14217.1|203676_203784_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14218.1|204274_204391_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14225.1|214880_215648_+|Copper-homeostasis-protein-CutC	unknown	unknown	gnl|CDD|225684
LR134384.1|VEH14216.1|203488_203677_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14222.1|208902_210237_-|muropeptide-transporter	unknown	unknown	gnl|CDD|341039
LR134384.1|VEH14210.1|192665_193319_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|374294
LR134384.1|VEH14207.1|189294_189969_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14206.1|188702_189233_+|Ribosomal-RNA-small-subunit-methyltransferase-D	unknown	unknown	gnl|CDD|367574
LR134384.1|VEH14214.1|199542_201798_-|Putative-alpha-1,2-mannosidase	unknown	unknown	gnl|CDD|377950
LR134384.1|VEH14215.1|201963_202941_-|Domain-of-uncharacterised-function-(DUF377)	unknown	unknown	gnl|CDD|350107
LR134384.1|VEH14219.1|204369_206007_-|Beta-hexosaminidase	unknown	unknown	gnl|CDD|119333
LR134384.1|VEH14213.1|197400_199536_-|Beta-hexosaminidase	unknown	unknown	gnl|CDD|119333
LR134384.1|VEH14211.1|193355_195524_-|Putative-alpha-1,2-mannosidase	unknown	unknown	gnl|CDD|377950
LR134384.1|VEH14209.1|191123_192011_-|Predicted-methyltransferase-(contains-TPR-repeat)	unknown	unknown	gnl|CDD|276809

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH14221.1|208025_208814_-|Glucosamine-6-phosphate-deaminase	gnl|CDD|179028	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional.	3.87852e-159
LR134384.1|VEH14223.1|210540_212085_+|Alpha-L-fucosidase	gnl|CDD|226195	COG3669, COG3669, Alpha-L-fucosidase [Carbohydrate transport and metabolism].	5.10577e-65
LR134384.1|VEH14219.1|204369_206007_-|Beta-hexosaminidase	gnl|CDD|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
LR134384.1|VEH14224.1|212278_214876_+|Alpha-L-fucosidase	gnl|CDD|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	7.85194e-18
LR134384.1|VEH14220.1|206037_208026_-|Glucosamine-6-phosphate-deaminase-1	gnl|CDD|235005	PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein; Validated.	0
LR134384.1|VEH14212.1|195707_197393_-|Sialidase-precursor	gnl|CDD|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	4.29056e-107
LR134384.1|VEH14225.1|214880_215648_+|Copper-homeostasis-protein-CutC	gnl|CDD|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	2.09845e-84
LR134384.1|VEH14222.1|208902_210237_-|muropeptide-transporter	gnl|CDD|341039	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.94191e-82
LR134384.1|VEH14210.1|192665_193319_-|Uncharacterised-protein	gnl|CDD|374294	pfam16011, CBM9_2, Carbohydrate-binding family 9. CBM9_2 is a family of putative endoxylanase-like proteins that belong to the Carbohydrate-binding family 9.	8.05741e-107
LR134384.1|VEH14206.1|188702_189233_+|Ribosomal-RNA-small-subunit-methyltransferase-D	gnl|CDD|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	9.65708e-45
LR134384.1|VEH14214.1|199542_201798_-|Putative-alpha-1,2-mannosidase	gnl|CDD|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
LR134384.1|VEH14215.1|201963_202941_-|Domain-of-uncharacterised-function-(DUF377)	gnl|CDD|350107	cd08993, GH130, Glycosyl hydrolase family 130. This subfamily contains glycosyl hydrolase family 130 (GH130) proteins, as classified by the carbohydrate-active enzymes database (CAZY), are phosphorylases and hydrolases for beta-mannosides, and include beta-1,4-mannosylglucose phosphorylase (EC 2.4.1.281), beta-1,4-mannooligosaccharide phosphorylase (EC 2.4.1.319), among others that have yet to be characterized. They possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Beta-1,4-mannosylglucose phosphorylase is involved in degradation of beta-1,4-D-mannosyl-N-acetyl-D-glucosamine linkages in the core of N-glycans; it produces alpha-mannose 1-phosphate and glucose from 4-O-beta-D-mannosyl-D-glucose and inorganic phosphate, using a critical catalytic Asp as a proton donor. This family includes Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1) and beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2), enzymes that phosphorolyze beta-mannosidic linkages at the non-reducing ends of their substrates, and have substantially diverse substrate specificity that are determined by three loop regions.	3.86021e-153
LR134384.1|VEH14213.1|197400_199536_-|Beta-hexosaminidase	gnl|CDD|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
LR134384.1|VEH14211.1|193355_195524_-|Putative-alpha-1,2-mannosidase	gnl|CDD|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
LR134384.1|VEH14209.1|191123_192011_-|Predicted-methyltransferase-(contains-TPR-repeat)	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.32864e-06

Protein sequences

>LR134384.1|VEH14215.1|201963_202941_-|Domain-of-uncharacterised-function-(DUF377)
MKNLKDILPWEDRPQGCKDVMWRYSQNPIIHRYDIPTSNSIFNSAVVPFGEGFAGVFRCDNKAVQMNIFAGFSDDGIHWKINETPIVFEAGNTEMIESEYKYDPRVTWIEDRYWITWCNGYHGPTIGIGYTFDFKTFYQCENAFLPFNRNGVLFPEKINGKYALLSRPSDNGHTPFGDIYLSFSPDMKFWGEHRCVMSPTPFPQSAWQCTKIGAGPVPFLVDEGWLLFYHGVITTCNGYRYSMGAAILDKEHPERVLYRTQPYLLAPNAPYELQGDVPNVVFPCAALHDDERVAVYYGAADTVVGLSFGYIREIVDFIKQNNILK
>LR134384.1|VEH14214.1|199542_201798_-|Putative-alpha-1,2-mannosidase
MKKNLIIALCMACNLGTLQIARASEIEPVDLVNTFIGTSNLGTTNPGAICPNGLMSVVPFNVMGSDENKCDKDSRWWSTPYEFHNVFFTGYSHVNLSGVGCPDVGSLLLMPTTGKLNVDYREYGSHYKDEVSRPGYYSNFLVKHGVKTEVSATLRTAVERFTFPKGASHLLLNLGEGLTKESGAMVKQVSPTEYEGFKLQGAFCYYAQAVFPIYFVMRVNKVPESAGYWKKQRERPDKQAEWFPDRGQYKLYTAYQKEIAGDDIGVYMNFNTAENEVIEVQIGVSFVSIANARENLNVEQQGKDFNAVAQEARQKWNADLKRIEVEGGTKDQQTIFYTALYHTLIHPNILQDVNGDYPAMESSRVLKQSEGNRYTVFSLWDTYRNLHQFMTLIFPNRQRDMVKSMISMYDECGWLPKWELFGRETYTMEGDPSIPVIVDCWLKGLRGYDINKAYTAMKKGAMTDEKSNPLRPDNNEYVEKGYVSLRDSFDNSVSHALEYYIADNALSRLASALGHKADAKLFYKRSMGYRHYFSKEFNMLRPILPNGKFYSPFNPLQGANWEPSPGFHEGNAWNYTFYVPHDVYGLAKLMGGKERFVKQLQSVFDRGNYDPTNEPNIAYPYLFSYFKGEEWRTQVLTHQLLQTYFKNSPEGLPGNDDTGTMSAWALFSMMGFYPDCPGEPAYTLTSPVFDKITLHLDEKQWGRNKLVIETLRSNPNAVRIEKIEVGGKPWRQYRISHNDLVKAGTLKFTLK
>LR134384.1|VEH14213.1|197400_199536_-|Beta-hexosaminidase
MSWRIIQKMPRIANLDEMKSYVKLGVIVLLVACFSFETHAQNIIPKPQSIVKGKGTLASSQLEGIMSNLNGKDIALLKDYIPQSISQELNTKKKRSVHKDSGCFLQLVCTGTPRQAQMAADSVRLQGYNLSISDHGVKIEALTPMGLFYGLQTLRQLEENGKFPYVTITDQPKYPYRGIMIDCSRHFFPIDVLKKQLDAMAYYKFDRFHWHLVDGGGWRLEIKKYPRLTEETAYRTQEDWEKWWNNGDRTFCRKEAPGAYGGYYTQDEVRDLLAYAAARHITVIPEIEMPGHSNEVLWAYPELACGGKVHGQSDFCVGKDSTYQFLKDVLMEVMALFPSSYIHIGGDEAERKTWATCTDCQREMQANGLNTTAELQGHFTENIEQFLNSHGRRLMGWDEIMEGKLAPNAAVMSWRGFKAGLEAARKGHPVVMTPGEYCYLDMYQDAPMTQPKAQGGFVTLEKTYGYEPLPDSCRTPQTEAFVEGLQGNVWTEYISTPQHLEYMLYPRALALAEIGWTNGPKDYAKFRKRALHAVAFLQQKGYNTFDLPHEIGERKEFVSGINHEALNKRVTYLSKYAPKYRAEGDSTLTNGRGGNWGYIEGRWQGFIDPKGVEVIIDMEKVTDIKDIEINFMQQPASMIYTPASVQIGVSAGGKDYVEIDKTTCDIQPSAGYLIYPYRWKGHAKGRYVHIKAQLHEPDSWLFTDEIIINRK
>LR134384.1|VEH14212.1|195707_197393_-|Sialidase-precursor
MKKILLALLLLGSFHAKAADTLFIKQPQVPILIERHDNILLLMRLDATETKTLDNVEVDLDKAFPINQVKTIRLYYGGTEARQHSKKMRFAPVDYITNFTPGKTLRAIPSYVVLRSELKPTAHHLTLQAKQQLFPGVNYFWVSIEMQPNVPVKTKLKAVLSKAVADGKALPLVNTSTPDMERRMGIGVRHAGDDGVSAYRIPGLVTTNKGTLLGVYDVRYNSSVDLQEHIDVGLSRSTDNGKTWEPMRLPLSFGENGGLPAAQNGVGDPAILVDNTNNTIWVVGTWTHGMGNQRAWVSSQPGMDKYHTAQLMMSKSTDDGRTWSAPINLTAQLKHPEWYFFFQGPGRGITCKDGTLVFAMQFIDKNRVPHAGIMYSKDHGKTWAISEPACNNTTEAQVAELPNGELMLNMRNQSGGGRAVYTTHDWGKTWQEHSSNIKALQEPICMGSLISVRAKDNVLGKNILLFANPNDPKERKNITIKMSFDDGKTWKNEHQVLLDDGYGWGYSCLTMIDRETVGILYESSVAQMTFQAIPLKDLITGKGQDHTPNTVVKRGSVCLTE
>LR134384.1|VEH14211.1|193355_195524_-|Putative-alpha-1,2-mannosidase
MKQMLLGLMLPLAGVAGLQAATQPTMQDYTQYVNPFVGTGGHGHVFLGANVPFGHIQAGPTQKKQGWDWCSGYHYSDSVLVGFGQMHLSGTGIGDLGDIALLPVTKNNEREVKFSHKAEYATPGYYAVTLANGVRVELTATPRTAFHRYTFPADVKQEQVVLDLSQGIGWDKMTACSMKQEGQNTVVGTRFSTGWAKDQRVFFVAEFSQPIIHQVMEGDTLSVLSFEPTGQPLMVKVGISSVSIENARKNLLQESPNWNFNTVVADAQTAWNKELGKIDIQTNNATDKRIFYTSLYHTMTAPSVFNDVNGEYRGADGKTYHGDFTPYTTFSLWDTYRAAHPLMTLIHPEKQRDIAQTMLHIAQQQGRLPVWYLEGNETDCMVGNPGIPVLVDIALKGFDVDKHAVLDAAKKTQLFGDRGLDLLKKYGYLPCDLDPTHETVAKGLEYALADGCIARLAKALKAEKDYKYFLKRSQSYRDYYFDKQTKFMRGIDSKGHFREPFDPFKTIHRADDYTEGTAWQYIWLVPHDVHGLISIFGGDKPFTNKLDSLFIVQGDMGEDASPDISGLIGQYAHGNEPSHHIVYLYDYAGQPWKTASRVREVLNTMYHDNIDGLSGNEDVGQMSAWYILSSLGFYQVEPAGGRYVFGSPLFDEATMNVGKGKTFRIIAHNNSKENMYIQSVKLNGKPYTRSYIDFKDIVRGGKLEFVMGSKPSKFGVKPADRP
>LR134384.1|VEH14210.1|192665_193319_-|Uncharacterised-protein
MKQIEVKRLDCQQVKAADIPSLFKTEKVEYHKIDTVDWPSDYPYCPHVEFAIAHKGDAIMIHYRVEEDSVRAVSGNDLGPVWEDSCCEFFVSPDAEGGYYNLETNCIGTVLLCNGQTREHRTPAPVALLDQIDRWASLGRTPFDTKNGAQAWELSLVVPVSSFFRHRLVDLSGQQMRANFYKCGDKTSRPHFLSWNPIDVASPDFHRPDFFGQITFL
>LR134384.1|VEH14209.1|191123_192011_-|Predicted-methyltransferase-(contains-TPR-repeat)
MKRRVVLFAVCLCSLMAWGQTDYYAHFQELLDKEDTVGLRAFIPEWEQKAGLSGDTYAAWCNLLLLEARKEVLQLSADTVVHDGLLLTDLTGNKAGSITDHVYYDAEKMGKLYQKFDEGLAEYPDRLDLWFGKVHVQLLENHANDAVETLKHVVDRSVINHQKWLWTNDKSTPSEAEDFFFSTLQSYFRQLYDAQEDAVNMAFVNHVLRSYPENIYFLNDKAALLTAKGEKNEALKVLLQLHNLAPNDDIVVANIATLSKETGNKKQAIAFYKKLLKSANEEFCNDAKRELGLKW
>LR134384.1|VEH14208.1|190115_191093_-|Uncharacterised-protein
MKKIKFFGLCFVFTCLLVGCQSPVIRQEVERIIQRIGRSYTPGAVGYEGRITHQDEWIEALGDVATSDELYQLAAADSVPMTRLAAFIALMKQRPDIAKNLALMDIQSRACVPALYGCDSYMESLANLRIEILQQEGRNYGLTKADSLAIDSCVLFTPHAKYLGYLTQLLMKLPPHPQYYTRVKALFLNDHYIEALVTLARYRKPEDVQYVLDALHGKVKDPIDVDAYWAEYERIRVSKLSLREKIECWVHPKKPLNEEIRRLKDEFNIHACWQYIPEEDGYNDAEWVKAIALQCVYENPDEPAFKPYLRAAEAYHREQLSYDED
>LR134384.1|VEH14207.1|189294_189969_-|Uncharacterised-protein
MNEYKGISMFKVSKKQHRRLLVSLWVVIVLTVIRNIVLPGLPGNAENAGLLLLLPIVKGKVFMFILGAAVVVAQCVILNELWVALRRIAHWGQWACLVFMVALVSNFMLGSVFTWFGTDASFYFSTVSRVVSYLQIGSFFLLSGAWLVVACVLAFSFSGRIKDCGLVLLALLMIVNAGIPILTKSLGEWSFAVAGILGFISFFVSLLFYYYIYKCFETTKDPQE
>LR134384.1|VEH14206.1|188702_189233_+|Ribosomal-RNA-small-subunit-methyltransferase-D
MRIITGTYKGRHFNIPRTFKARPTTDFAKENIFNVLQGYIDFEGATALDLFAGTGSISLELVSRGCKQVVSVEADRDHANFIRQCFAKLKEDKDLLIRGDVFRFLKSCHQQFNFIFADPPYALKQLPEIPDLILNGNLLAEDGLFVFEHGKDQDFSAHQRFVEHRSYGSVNFSIFK
>LR134384.1|VEH14216.1|203488_203677_+|Uncharacterised-protein
MLCFASNSLAICIKLWCNLHQIVVQSASNLTVISVTLRGKVTEITGAIYIILCGNPHHILSS
>LR134384.1|VEH14217.1|203676_203784_+|Uncharacterised-protein
MTMWQGNGQEMGGQLGTSCALESPTLANEESQRGD
>LR134384.1|VEH14218.1|204274_204391_+|Uncharacterised-protein
MSTAYRCVEHEPPDEVIGQQTVVLPTSEKNDVYQSDLL
>LR134384.1|VEH14219.1|204369_206007_-|Beta-hexosaminidase
MHKRMLMIVALCASLLQVSAAEADYHVIPLPQQITMSKGKPFSLLPTTQIICTSSDELMQKNARFLCDYIKETTGLTLTVSNSAKVKTPAIMLVLDPKMQGEEAYKLSVSTKKVVISGRTSAGIFYGIQTLRKSLPIMNAANAEPIMLPAAEITDAPRFAYRGMMLDCSRHFFSVDFVKRYIDLLALHNMNVFHWHLTDDQGWRLEIKKYPKLTEIGSKRTGTIMGHNSDVDDGQPYGGFYTQKEAKEIVEYARLRHITVIPEIDMPGHMKAALAAYPELGCTGGPYEVGHAWGIYKDVLCLGNEKVYQFVNDIIDEVADIFPAKYIHIGGDETPTTRWGECPKCKKVAAENSLKLNKLQAYFTNRVEKYINGKGREIVGWDEILDGDINPSATIMSWRGIEPGERGAKLGHDVIMSPTSYCYFDYKQNKNEETEPEGQHALLTVEKVYSLDPAPATMSADSRKHILGAQGNLWTEYVAYPNRAEYAVLPRMAALCEVQWTPTDKKDFNNFRQRADHMAKIYDLHNYVYALHLWPNRFNHNRSDW
>LR134384.1|VEH14220.1|206037_208026_-|Glucosamine-6-phosphate-deaminase-1
MKLNLSSQIVLNQTPEAFYRPATAVDRSEITRFEKVPTDIFPTIEEGSVSIVNQLEAEIKRKQQEGESFVLGVGSGSSLTPIFQEMIKRYQAGKLSFKNVIIFNAYEYFPLSAENVNRSINQLKERLLDHIDIEEQNIHTPDGTISQDDVQEHCYLYEQRIKSLGGLDAILLGIGRMGNIATNEPGSSLTSTSRLILIDEMSRDEMKMSFGSQETVPPCSITMGVNTILSARKIFLTAWGEEKADIIKETVEGKITDAVPASFLQTHNNAHVVIDLSAAAKLTRIQHPWLVASCKWTDKLVRSALVWLCQITGKPILKLTNKDYNENGLSELLALYGSAYNANIKIFNDLQHTITGWPGGKPDADDTYRPERANPFPKKVIVFSPHPDDDVISMGGTLRRLVQQGHDVHVAYETSGNIAVGDEEVVRFMHFINGFNQLFGNEQDEIIRSKYKEIKQFLKNKKEGDIDSQDIRTIKGLIRRGEARTACTFNQIPLDHVHFLDLPFYESGKIEKLPMGEADVNIVRKLISTIKPNQIYVAGDLADPHGTHRKCTDAVLAALDMEKEAKAEWLKDCRVWMYRGAWAEWEIENIEMCVPMSPEELRAKRNSILKHQSQMESAPFLGNDERLFWQRSEDRNRGTAKLYDDLGLACYEAMEAFVEYKI
>LR134384.1|VEH14221.1|208025_208814_-|Glucosamine-6-phosphate-deaminase
MRLIIEPNYEQLSKWAANYVIERINAAKGQEKPFVLGLPTGSSPERMYAELIKAYKEGRVSFKNVVTFNMDEYVGLPEDHPQSYHSFMAEKLFNHIDCPKENIHILNGNAEDLQAECQHYEDMIREAGGIDLFLGGIGPDGHIAFNEPGSSLRSRTRIKTLTSDTRIANSRFFDNDPMKVPAHALTVGVGTVMDAKEVLILVNGHHKAEALHAAVEGGITQKWTISALQMHEHGIIVCDEAATDKLTVETYKYFKNIEKENL
>LR134384.1|VEH14222.1|208902_210237_-|muropeptide-transporter
MDLKAKNHAIKTTSQGRPHSPATWVPTLYFAMGMPFVVLNMVSALMYKGMGVSDAQIAFWTSLIMIPWTLKPLWSPFLEIYKTKKFFVVLTQLLTGVLFALVSFALHLPSFFAITIAILAVIAMSGATHDIAADGTYISVLSNEEQARWIGWQGAFYNIAKIAATGGLVYLAGTFIKLFGVTKAWMIIMLIIAVIMVSVGVYHYFMLPTPKGEADKEPVSLNDSLHELLEVFLDFFTKRHIVYYICFIILYRFAEGFVMKIVPLFLKASRAEQGLGLSEQEIGLYYGTFGAAAFVLGSILAGYYIAWRGLQKSLFSLALVFNIPFVAYTLLALYQPESLWLIGGGIVMEYFGYGFGFVGLSLFMMQQVAPGKHQMAHYAFASGIMNLGVMLPGMMSGYISDKLGYQHFFLVVLVCTIPALLITWFVPFTYPDATKKIKASAGNE
>LR134384.1|VEH14223.1|210540_212085_+|Alpha-L-fucosidase
MRIEAYSQFIKSAIATFCLLFVPSLQSSFHAQENNIVVIKPTDTPADIVRKAAHVVPSARQFNWQRQELTAFLHFGVNTYTGKEWGDGTESEAIFNPTALDADQWIRELKATGFKCAILTCKHHDGFCLWPSAYTEHSVKYSPWKNGMGDVVREVSEACQKYGMAFGVYLSPWDRNSKLYGTEAYNDYFVNQLTELLTQYGKVSEVWFDGACGEGANGKKQEYDFVRWYELIRKLQPEAVIAVMGPDVRWVGTETGRGRTTEWSVVPKDNLNQEAIAQNSQKEVLTQPVGDMKGQDLGSRKIIEKAKSLIWYPAEIDVSIRPGWFYHESQDHQVKTPKELIDIYFTSVGMNGVLLLNLPPNKEGKLAEADIQSLRGFRQLYDATFTENLLSNAKITCKVSEGKPRNIIDNNYDTSVLPNMKTGEAVFLFKLKQPVTFNVLSVQEDIRKGQRVEAFTLEVKDVHGKWQKATEGTTIGHKRLLKFPLQTAKEVRLTVQQVRAVPAIAEIGLYHLKE
>LR134384.1|VEH14224.1|212278_214876_+|Alpha-L-fucosidase
MKKTLFTLLFVAVSLTVQAQHFIKDASFRQKVESAWKAKINLIGAKYWEIKNLQTTPEEEEALKFLYAYMPIADATDYPKAYHLGNVRTALRTRREMPWGKQVPELLFRHFVLPMRVNNEPLDSSRAIFFRELKERVKGLSMTDAILEVNHWCHERVTYEPSDARTSSPLQSIQTGRGRCGEESTFTVSALRAIGIPARQVYTPRWAHTDDNHAWVEAWADGKWYFLGACEPEPVLNLAWFNAPASRAMLMHTRAFGDYEGPEEVMLRTNNFTEINLIDNYGSTGKIDFSIIDLQGKPVADARVDFKIYNYAEFYTAASKYTDSNGQTFLSAGKGDMLVWASKNGHFGYAKASFGKDKHVTIKLSYDEKNFGKEEDLDIVPPAEHVVLPDVTDAQRAHNSTRLAEEDAMRNAYIATFPTQESMKDYVIPAAIPYIIKARGNWRTIKAFVEKHAANRVRALELLSTLSDKDLRDMPMEILEDNMSAPTDQLSPRVENEMILKPFKHFFAKAFSKEAQTFRNNPALLVNWIQKNIKMNPDKHAMRIPQTPISVWECRVADDRSRDIFFVDVARSIGIDARKDAVTGKIQYKKDGNWMDVDFDTTVQQVAKTGTLILNYTPTEYLDDPKYYTHFTISKIINGRTWLMNFDEGQLDMGGGTTWSNVFKKGTTLDEGTYLLVSGQRMADGSVMVHKRFFTIEPGKTTAIHLVIRQETEGIKVIGSFNSEDLFEKDGQEVSVLSQTGRGYYVLGILGIGQEPTNHALHDIAKLKEKLDKWGRPMVLLFTSEAEKKKFEAQKSEFGSLPEKTIFGIDRNGIIQKEIVREMKLRNANQLPIFIIADTFNRVVFISQGYTIGLGEQLVKTGSKL
>LR134384.1|VEH14225.1|214880_215648_+|Copper-homeostasis-protein-CutC
MSSMKERKKFEFEVCANSVESCIAAQRAGADRVELCMGIPEGGTTPSYGELQMARNLLKETRLHVIIRNRGGDFLYAPQELERMAMDIELCKRVGVDGVVFGCLTPEGDIDKAANTFLLEHAKGMSVTFHRAFDRCRDPKEALKKIIALGFDRVLTSGQQPTAEQGIPLLRQLHVLADNRIILMAGCGVNESNIARIHKETGVHAFHFSAREPKHSLMTYANPAVFMGKPGADEDTILITTERRVRNTIDALLNG

Crispr_ID: LR134384_4

• CRISPR_ID: LR134384_4
• CRISPR_location: 481520-481677
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of LR134384_4

Consensus_repeat	Method
AATGAATATAGGTTGTTGTTGTGAAA	CRISPRCasFinder

spacers of LR134384_4

>4.1|481546|40|LR134384|CRISPRCasFinder
TAGCCTTTAGGATTAACTACATCAGTAATAACTGCTTTAA
>4.2|481612|40|LR134384|CRISPRCasFinder
GAGTCCCAATTTGCCGATACGGATAGCATAGAATTGCAAG

CRISPR arrays and Neighbor proteins around LR134384_4

CRISPR arrays

The CRISPR arrays of LR134384_4

>merge|LR134384|4|481520-481677|CRISPRCasFinder
AATGAATATAGGTTGTTGTTGTGAAATAGCCTTTAGGATTAACTACATCAGTAATAACTGCTTTAAAATGAATATAGGTTGTTGTTGTGAAAGAGTCCCAATTTGCCGATACGGATAGCATAGAATTGCAAGAAAGAATATAGGTTCTTGTTGTGCCG

>LR134384|4|4|481520-481677|CRISPRCasFinder
AATGAATATAGGTTGTTGTTGTGAAA	TAGCCTTTAGGATTAACTACATCAGTAATAACTGCTTTAA
AATGAATATAGGTTGTTGTTGTGAAA	GAGTCCCAATTTGCCGATACGGATAGCATAGAATTGCAAG
AAAGAATATAGGTTCTTGTTGTGCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH14440.1|479719_479962_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14449.1|492148_492466_-|transcriptional-regulator,-y4mF-family	unknown	unknown	gnl|CDD|238045
LR134384.1|VEH14451.1|492907_493555_-|Phosphoglycolate-phosphatase	unknown	unknown	gnl|CDD|223620
LR134384.1|VEH14448.1|489829_491911_-|Outer-membrane-cobalamin-translocator	unknown	unknown	gnl|CDD|238657
LR134384.1|VEH14441.1|479998_480712_+|Transposase-and-inactivated-derivatives	unknown	unknown	gnl|CDD|376574
LR134384.1|VEH14443.1|482813_483635_+|CAAX-amino-terminal-protease-self--immunity	unknown	unknown	gnl|CDD|376806
LR134384.1|VEH14439.1|479367_479754_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14450.1|492470_492812_-|Phage-related-protein	unknown	unknown	gnl|CDD|377579
LR134384.1|VEH14433.1|473394_474873_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14444.1|483816_485703_-|Cadmium,-zinc-and-cobalt-transporting-ATPase	unknown	unknown	gnl|CDD|319847
LR134384.1|VEH14445.1|486312_487347_+|Holliday-junction-ATP-dependent-DNA-helicase-RuvB	unknown	unknown	gnl|CDD|234619
LR134384.1|VEH14435.1|476294_476546_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14436.1|476745_477666_-|Transposase-DDE-domain	unknown	unknown	gnl|CDD|372648
LR134384.1|VEH14446.1|487776_488901_+|Predicted-ATPase-(AAA+-superfamily)	unknown	unknown	gnl|CDD|224586
LR134384.1|VEH14434.1|474874_475582_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14438.1|478230_479043_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14442.1|481872_482814_+|Riboflavin-biosynthesis-protein-ribF	unknown	unknown	gnl|CDD|235536
LR134384.1|VEH14437.1|477923_478244_-|O-6-alkylguanine-DNA:cysteine-protein-methyltransferase	unknown	unknown	gnl|CDD|226219
LR134384.1|VEH14447.1|489027_489540_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14432.1|472702_473392_-|Uncharacterised-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH14449.1|492148_492466_-|transcriptional-regulator,-y4mF-family	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.16917e-10
LR134384.1|VEH14451.1|492907_493555_-|Phosphoglycolate-phosphatase	gnl|CDD|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	6.38036e-53
LR134384.1|VEH14448.1|489829_491911_-|Outer-membrane-cobalamin-translocator	gnl|CDD|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.31696e-44
LR134384.1|VEH14441.1|479998_480712_+|Transposase-and-inactivated-derivatives	gnl|CDD|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	1.20294e-48
LR134384.1|VEH14443.1|482813_483635_+|CAAX-amino-terminal-protease-self--immunity	gnl|CDD|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.06406e-16
LR134384.1|VEH14446.1|487776_488901_+|Predicted-ATPase-(AAA+-superfamily)	gnl|CDD|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	3.06548e-07
LR134384.1|VEH14444.1|483816_485703_-|Cadmium,-zinc-and-cobalt-transporting-ATPase	gnl|CDD|319847	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell. Bacillus subtilis CadA/YvgW appears to transport cadmium, zinc and cobalt but not copper, out of the cell. Functions in metal ion resistance and cellular metal ion homeostasis. CadA/YvgW is also important for sporulation in B. subtilis, the significant specific expression of the cadA/yvgW gene during the late stage of sporulation, is controlled by forespore-specific sigma factor, sigma G, and mother cell-specific sigma factor, sigma E. This subfamily also includes Helicobacter pylori CadA an essential resistance pump with ion specificity towards Cd(2+), Zn(2+) and Co(2+), and Zn-transporting ATPase, ZiaA(N) in Synechocystis PCC 6803. Transcription of ziaA is induced by Zn under the control of the Zn responsive repressor ZiaR. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
LR134384.1|VEH14445.1|486312_487347_+|Holliday-junction-ATP-dependent-DNA-helicase-RuvB	gnl|CDD|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
LR134384.1|VEH14442.1|481872_482814_+|Riboflavin-biosynthesis-protein-ribF	gnl|CDD|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.38985e-114
LR134384.1|VEH14436.1|476745_477666_-|Transposase-DDE-domain	gnl|CDD|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.71265e-79
LR134384.1|VEH14437.1|477923_478244_-|O-6-alkylguanine-DNA:cysteine-protein-methyltransferase	gnl|CDD|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	5.57723e-31
LR134384.1|VEH14450.1|492470_492812_-|Phage-related-protein	gnl|CDD|377579	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891). This family consists of hypothetical bacterial proteins of unknown function as well as phage Gp49 proteins.	2.91133e-15

Protein sequences

>LR134384.1|VEH14441.1|479998_480712_+|Transposase-and-inactivated-derivatives
MDVCKVLDEIDEKKREDVEEVTLDLSDSMRKIVRHCFPKAKRVIDRFHIQKLAIDAVQQMRIEHRWAALQEANEEKENAKLEKRAYQSVTFENGDTRSELLVRSRYLLFKSSEKWTDEQKLRAKILFREYPDIKKAYGLSHSLRMIFAKNTVKDAARLSLAKWYNKVEEANFHSFNVIAATIYEHYDDILNFYINRATNAAAESFNAKIKLFRANVRGVVDKSFFLFRIAKLYAYPH
>LR134384.1|VEH14440.1|479719_479962_+|Uncharacterised-protein
METSPVTCRTLEEFYHINGHSFEKQYKEILSGYRSWEQLAHAQKWLLFENNIGKSIAIDETSLSNGELYTIVTNRDRHGR
>LR134384.1|VEH14439.1|479367_479754_+|Uncharacterised-protein
MEEKNLYQLAEFVLPSDILHYFSIVKIEPDSSLLRIYLDEKMEKELSEVLHFESKGFMDAVEVTDFPIRDHKVILVLRRRRWIDTRTGKSFSLPLQIDITASGTRYSKEFGAFLKETYGDVPSDLPYA
>LR134384.1|VEH14438.1|478230_479043_-|Uncharacterised-protein
MNPIKAFLCVVCCLSASNGMASGNPNGAPKHWALQASFGGTTLADDTSDGQDFYIGDEEGNYFALSADYYLNPHLVLTGNLYYEQDGIATQYAAGIGLKKVNMLGLEGGIKWYFCPQKWVVQPHIGGLIQTNFLNLKRMQGSETHVLQQAYPGSHVQMNYDVQCPAIALKPKIGVDIRIISSVSLCFAYDIGFGLGGHHRADMRFLDLPFTGQTCQYQADNIRTTVSLGLKIDFPTRPVSGKTVNNLFMILSAWLESKSQNRSTFSHGSF
>LR134384.1|VEH14437.1|477923_478244_-|O-6-alkylguanine-DNA:cysteine-protein-methyltransferase
MAHFDFELFRQEVANIVSQIPRGYVLTYGRIARLSGYPSHARQVGRALHGMTDKAIPCHRVVDSVGRTAPNWPAQRTLLAAENVCFKANGNVDLRRSQWDYEAEEV
>LR134384.1|VEH14436.1|476745_477666_-|Transposase-DDE-domain
MITTDKVTEIFCILDEFCKNLDAELTKNLHIAPIDEGYKRMRNRKGQMSKSEIMTILLCYHFGSFRNFKHYYLFFIKEHLASYFPKAVSYTRFVELMPRVFFELMAFMRIQGFGKCTGISFVDSTMIPVCHNMRRNFNKVFDGLAKNGKGTMGWCHGFKLHLLCNEMGDVLTFCLTPANVDDRDPRVWQVFTKVLYGKVFADKGYIKQEFFENRFNQGIHLVHGIKSNMKNKLMPLWDKMMLRKRYIIECINELLKNKANLVHSRHRSVHNFLMNLCAALAAYCFFENKPEALPVRIEKSRKLELF
>LR134384.1|VEH14435.1|476294_476546_-|Uncharacterised-protein
MKIERLKKEAHEFKLLKEEITTLLMDTESFITQGKVKDAKEALDAVRNKIIRIKDANIRKHYIQAQEALTKLENTLEKKDLHE
>LR134384.1|VEH14434.1|474874_475582_-|Uncharacterised-protein
MIYIENRKRKIERIKEEHPDADILDITSNSETRYAKILSPFYPHGNIPIPFTNELKATCVEAVWQGLKVFDSVDVDFPTFKNDTMRNLKRTVRKFGKPKGHRKGAYGKELLNYFEARMLIYLPTYKWVLDNVPEVHRVVERIKEQSKKRDIVLLDYNTNTDFRDISKPLSHAGLVKLYIEGNYPEGMEGYNPMSEEEIEVKRLKEKEQKKRLRKKGKLEKNVQIGNLFYDLNTKE
>LR134384.1|VEH14433.1|473394_474873_-|Uncharacterised-protein
MQEYIGLIVAVAVVLVVIALQVFSFLKTKKNITELRDLFKEVDNLSLKETSVTSDVLRNKSSLQKFLENIPSRIEEGLDEDYINLSLIVSQKEGMPKGRLGKIIHRTNEYLCKNTGTSADLSVLRDISDNQKGALEDDIQNSLNVPLYLGLAGTFVGIITGLIGVDFNQIFGTTSNLDGLQHLLYGVVAAMFASLLGLGFTVYNSAISYKNAVSKSNEGTEEYINFLRRELMPLLSNSMASSLNSLKGVLGHFVDKFGRNLDAYADSAELLNDNLEKQHLVLSEINKLSLTQTANKIAETFIQLKESADSLNVFRTYQKQLNSTIVNVSGMVNQIQTIIGNFNDFATGLSVVISNQNKTTELQREFQEAITIHFPTGGDARDVWRKEFDMLISEGKTVSENLSTQLTVSTEYIKNFIANNKDFFDTFDKFKEVLDTMVQYTQVQAECYKDLRREILNLRKDYKDAQMESIDLHKSMLKAIDSMTKALDEIRK
>LR134384.1|VEH14432.1|472702_473392_-|Uncharacterised-protein
MARKRHKDSFWLSYSDLMTSLFFIMLVLFVVCICKMKITNFQLNTALKEANATNEQLQQILQLETQFKELSKSSDLKYIEEKKMFVAKDFIGVEIFNPNKDVIKPEYIATVDRVGNSLQEIVQRLHEKNPNLNFQLVIEGNAAIPWEQLKENTYNADNIQMYELSYHRALALYRRWKLKGFDFRNYNTEVIIAGSGFNGINRDMEVEENNKRFVIQIIPKISRPTQFKF
>LR134384.1|VEH14442.1|481872_482814_+|Riboflavin-biosynthesis-protein-ribF
MNTIFLSEENNAIAPCVATIGFFDGVHRGHQYLIKHVIDKAKACGLASTVITFDRHPRQVLHSDYVPQLLTTLENKLLLLSKTGIDNAAVLPFDEATAHLSAFDFMRQVLHDRLNVKQLIIGYDNRFGHNREEDFEDYVRYGNELGIEVIHNQAFVLNGVNVSSSVIRSFLQAGEIGMATLCLGYSYTLVGKVVHGFAQGRKMGFPTANIDTTESGQLVPAPGVYAVKVKIENTVTLLHGMMNIGMRPTFDGSKLTLEVNIFNFQGDLYDKQLQVVFIHRIREERKFTNALGLAEQLQKDRLQIEEQFKKEIE
>LR134384.1|VEH14443.1|482813_483635_+|CAAX-amino-terminal-protease-self--immunity
MNKTGKQILHAGLYLVVFILIQFFVQIVVVGGYMLFKHLPLADLRTVIAENTAVTIASTIISSLITIALFLVLGWTSKSRDYLSSRPWTTLMWVVLAAIGIIIPASGLEELFKVDMPEQLEVLFTRMMHEPLGYVAIGILGPLAEEIVFRGAILRTLLKLFGSKPWIAIAISAAVFGLVHGNSAQFLHAFLLGLLLGWMFYRTGSIVPGVVLHWVNNTIVYVMANLMPGFENATLSQLANGKPVVIALYIFFSLCILVPALVQLNKRLARAKM
>LR134384.1|VEH14444.1|483816_485703_-|Cadmium,-zinc-and-cobalt-transporting-ATPase
MAHEAHHHEHEEEGMNWGLIIASAVFLVIGLLLDKLPMFWFINPYLIFFIYIVAFMPVGLPVMHKAWTAIKHEHDFFSEFMLMSVAAVGALYLGEYPEATAVMLLYCIGEGLQDRAVDRARDNIKSLLAFRPDFARMPDGRKERPENVEIGTKIEVRPGERVPLDGRLLESSATFNTAALTGESMPRLIEAGQEVMAGMIATDSVVWLRVVRKANESAISRMLKMVEEATERKAPTENFIHRFAHIYTPAVIALAFLVVIVPWMVSLFTAFNYYFSVWLHLALVFLVISCPCALVISVPLSYFAGIGAASRRGILFKGSNSLDAVTKLDTAVFDKTGTLTTGTFQVEKTVGLSEEDMALVAAVEAVNSHPIAQAIVKSMQGKELIDVDKNQIENVPGYGMKYKTCLMGTLKLLKQEGVNYDEALESVAETIVAVAEDKLFKGYILLADTPKAGIFTLPKRLKAQGIKMMQVLSGDKQALIDRLVVQFEDAKDYVKGYGDLLPEHKVAHIEALKHDGREVAFIGDGINDAPVLALSNVGFAMGKMGADMAVETADVVIQTDDPLKVGEAIAIGRRTRRIVLQNIIFAIGVKVLVMLLGVLGMATLWEAVFADSGVALLAVMNSMRALKK
>LR134384.1|VEH14445.1|486312_487347_+|Holliday-junction-ATP-dependent-DNA-helicase-RuvB
MTEDFDIREERLSTEEKDFENALRPLRFADFNGQKKVVENLEIFVEAAKYRSEPLDHTLLYGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGMLTAPLRARFGINMHLEYYDPETLERIIRRSAMLLKVPIDDEAAIEISRRSRGTPRIANALLRRVRDFAQVKGNGTITNEIAHIGLQSLNIDQYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEDVYEPFLIMEGFIKRTPRGRMATPLAYEHLGRNPYMGNVMEPRLFE
>LR134384.1|VEH14446.1|487776_488901_+|Predicted-ATPase-(AAA+-superfamily)
MKTINNPFITYGYKGNRYFCDRENETKKLIEALQNDRNVTLISPRRVGKTGLIKHVFSQIERQDKHVKCFYIDIFATKNLEQMVQLMARNILGHLDSTPQAALKRLQEFFGSLRPTVSFDQLTGLPSVSLDIKPTEEAQTLKRIFDYMQQSKYRCYVAIDEFQQILSYNNQGIEATLRSYIQFLPNVYFIFAGSMQHLMEEMFTSANRPFFQSSQIMLLDNVPADKYLSFANGFFKSQKRSISEEVFSQLYHKVDGITWYVQTILNRAYQYAEASLTDDFFGQIVDELVCEQKPVYENYYASLTEMQANLIEAVAKEGCVAAPLAHQFIAKYGLKATSSVRTALKALVDRQFIYRKPEGYVVYDRFFGMWLSRL
>LR134384.1|VEH14447.1|489027_489540_+|Uncharacterised-protein
MKKMFYCLAMIGLFSVSSCRSIQQSEGIGQADSIHVEYCGMAGTTRYVINHSDTIMMLKGNFLHDIHGVECPSLFEPVRKVASDDVPVIQRLAHQLFVERSKPDTLWTKPYQYGMTCLPILSVHVFKKEKETVYRYDTGEEKNGIVYSTSVQIKYSPAFLEFTHRLRKCF
>LR134384.1|VEH14448.1|489829_491911_-|Outer-membrane-cobalamin-translocator
MNKTVFNKRCRIRFKHFTNKGYALFSCLGREVIVGTLSVATLTCAKAESISNDVQKADTSLYQGGKAMLLNGVSITASRAPLTQSQQSRMVTVLSREDVQAAPVHSVNDLLKLVSGVDVRQRGPLGAQTDVSIRGGNYEQITLLLNGINIGDPQTGHNAADFPVDISEIERIEVLEGPAGSVYGTSSLLGAINIVTKANTRSSASVHAASGSFGTVTSGGRINVARGKWNNQWSASFTRTDGYNRNKEGKLNTDLRTQKAFYQGFYNDDDLSMSWHAGLSNKDFGSSTNYSAKYDDQFEHTFKTFMALQAETRKGTIKWHPAIYWNHNYDRFELFRDRADRYPFNYHRTDVYGVNVNAYFDWTLGRTAFGAELRNEDLVSTNLGNPLSHPKHVKGTDNVMYKVGFNRTNIQFVAEHNLLIGRFTMSAGVVAVKNSWAEMNMKVYPSVNASYRLGDAWKVYASYNTSLRMPSVTELFYSVGGHKADPNLKPEELAAVEMGVKYSKNGLSGSVSGFHNHHTNLIDWIDDGEKDAAGAVLWKSVNFGTINALGVEMALNVDFRQLLPTQKLLKTFNLGYCFIQQHQIEAAGIHSLYALEYLKNKVTGNLQLNLWKQLDLGINYRFQHRMGSYKDPAGVLHRYRSYGLLDARLAWNMPKYSLYLEGNNLLNRSYVDVGNVKQPGCWVMAGAKMDINL
>LR134384.1|VEH14449.1|492148_492466_-|transcriptional-regulator,-y4mF-family
MMIQQKLYSHEEMLNKVLGEKGTPERNQYEAELKSFLMGDAIKKARQSCNLTQEQLGERMGIKKAQVSRIEGGKNLTFSTIARAFKAMGIHANFEVKGVGKVALW
>LR134384.1|VEH14450.1|492470_492812_-|Phage-related-protein
MEQKPRFKIVYTEEAIDFLRHLPQKVKAKVVYNIGKSMYVLDNSLFKKLENTDIWEFRTLYNGNAYRLFAFWDTEEDTLVIATHGMIKKSQRTPLKEIEKAEAKRKEYFMNKG
>LR134384.1|VEH14451.1|492907_493555_-|Phosphoglycolate-phosphatase
MKTRIVILDFDGTLGDSQTLITRTMRETLQRVGLPEKTEEECAKTIGLPLKQCFLALMDMTDEMAEKCTSAYREIFERNNIHGAVPAFPGVIKTIKKLHDDGLTVTIASSRGHHSLAAFVEELHLEPYISLILGADDVEKAKPNAEPVLKTLHHFGLQPAEALVVGDTAFDILMGRNAGTKTCGVTYGNGSKEDLQAALADYIIDEFAEIEQCLE

Crispr_ID: LR134384_5

• CRISPR_ID: LR134384_5
• CRISPR_location: 485758-485848
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134384_5

Consensus_repeat	Method
AGTTGCAAAGTAGAGCAGGTTGTT	CRISPRCasFinder

spacers of LR134384_5

>5.1|485782|43|LR134384|CRISPRCasFinder
TGATTTTCCTCTGCGGCCTCTTCCACGGCTTTCGGATAGACAT

CRISPR arrays and Neighbor proteins around LR134384_5

CRISPR arrays

The CRISPR arrays of LR134384_5

>merge|LR134384|5|485758-485848|CRISPRCasFinder
AGTTGCAAAGTAGAGCAGGTTGTTTGATTTTCCTCTGCGGCCTCTTCCACGGCTTTCGGATAGACATAGTTGCAAAGTAAAGCAGGTTGTT

>LR134384|5|5|485758-485848|CRISPRCasFinder
AGTTGCAAAGTAGAGCAGGTTGTT	TGATTTTCCTCTGCGGCCTCTTCCACGGCTTTCGGATAGACAT
AGTTGCAAAGTAAAGCAGGTTGTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH14440.1|479719_479962_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14449.1|492148_492466_-|transcriptional-regulator,-y4mF-family	unknown	unknown	gnl|CDD|238045
LR134384.1|VEH14451.1|492907_493555_-|Phosphoglycolate-phosphatase	unknown	unknown	gnl|CDD|223620
LR134384.1|VEH14448.1|489829_491911_-|Outer-membrane-cobalamin-translocator	unknown	unknown	gnl|CDD|238657
LR134384.1|VEH14441.1|479998_480712_+|Transposase-and-inactivated-derivatives	unknown	unknown	gnl|CDD|376574
LR134384.1|VEH14443.1|482813_483635_+|CAAX-amino-terminal-protease-self--immunity	unknown	unknown	gnl|CDD|376806
LR134384.1|VEH14454.1|495729_496404_+|Orthopoxvirus-protein-of-uncharacterised-function-(DUF830)	unknown	unknown	gnl|CDD|368573
LR134384.1|VEH14439.1|479367_479754_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14453.1|495183_495720_+|LOG-family-protein-yvdD	unknown	unknown	gnl|CDD|129813
LR134384.1|VEH14446.1|487776_488901_+|Predicted-ATPase-(AAA+-superfamily)	unknown	unknown	gnl|CDD|224586
LR134384.1|VEH14444.1|483816_485703_-|Cadmium,-zinc-and-cobalt-transporting-ATPase	unknown	unknown	gnl|CDD|319847
LR134384.1|VEH14445.1|486312_487347_+|Holliday-junction-ATP-dependent-DNA-helicase-RuvB	unknown	unknown	gnl|CDD|234619
LR134384.1|VEH14435.1|476294_476546_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14436.1|476745_477666_-|Transposase-DDE-domain	unknown	unknown	gnl|CDD|372648
LR134384.1|VEH14452.1|493850_495035_-|enterobactin/ferric-enterobactin-esterase	unknown	unknown	gnl|CDD|199894
LR134384.1|VEH14438.1|478230_479043_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14442.1|481872_482814_+|Riboflavin-biosynthesis-protein-ribF	unknown	unknown	gnl|CDD|235536
LR134384.1|VEH14437.1|477923_478244_-|O-6-alkylguanine-DNA:cysteine-protein-methyltransferase	unknown	unknown	gnl|CDD|226219
LR134384.1|VEH14447.1|489027_489540_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14450.1|492470_492812_-|Phage-related-protein	unknown	unknown	gnl|CDD|377579

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH14449.1|492148_492466_-|transcriptional-regulator,-y4mF-family	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.16917e-10
LR134384.1|VEH14451.1|492907_493555_-|Phosphoglycolate-phosphatase	gnl|CDD|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	6.38036e-53
LR134384.1|VEH14448.1|489829_491911_-|Outer-membrane-cobalamin-translocator	gnl|CDD|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.31696e-44
LR134384.1|VEH14441.1|479998_480712_+|Transposase-and-inactivated-derivatives	gnl|CDD|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	1.20294e-48
LR134384.1|VEH14454.1|495729_496404_+|Orthopoxvirus-protein-of-uncharacterised-function-(DUF830)	gnl|CDD|368573	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family. Amidase_YiiX is a family of permuted papain-like amidases. It has amidase specificity for the amide bond between a lipid and an amino acid (or peptide). From the structure, a tetramer, each monomer is made up of a layered alpha-beta fold with a central, 6-stranded, antiparallel beta-sheet that is protected by helices on either side. The catalytic Cys154 in UniProtKB:Q74NK7, Structure 3kw0, is located on the N-terminus of helix alphaF. The two additional helices located above Cys154 contribute to the formation of the active site, where the lysine ligand is bound.	2.91372e-15
LR134384.1|VEH14443.1|482813_483635_+|CAAX-amino-terminal-protease-self--immunity	gnl|CDD|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.06406e-16
LR134384.1|VEH14453.1|495183_495720_+|LOG-family-protein-yvdD	gnl|CDD|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	7.09029e-31
LR134384.1|VEH14446.1|487776_488901_+|Predicted-ATPase-(AAA+-superfamily)	gnl|CDD|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	3.06548e-07
LR134384.1|VEH14444.1|483816_485703_-|Cadmium,-zinc-and-cobalt-transporting-ATPase	gnl|CDD|319847	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell. Bacillus subtilis CadA/YvgW appears to transport cadmium, zinc and cobalt but not copper, out of the cell. Functions in metal ion resistance and cellular metal ion homeostasis. CadA/YvgW is also important for sporulation in B. subtilis, the significant specific expression of the cadA/yvgW gene during the late stage of sporulation, is controlled by forespore-specific sigma factor, sigma G, and mother cell-specific sigma factor, sigma E. This subfamily also includes Helicobacter pylori CadA an essential resistance pump with ion specificity towards Cd(2+), Zn(2+) and Co(2+), and Zn-transporting ATPase, ZiaA(N) in Synechocystis PCC 6803. Transcription of ziaA is induced by Zn under the control of the Zn responsive repressor ZiaR. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
LR134384.1|VEH14445.1|486312_487347_+|Holliday-junction-ATP-dependent-DNA-helicase-RuvB	gnl|CDD|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
LR134384.1|VEH14442.1|481872_482814_+|Riboflavin-biosynthesis-protein-ribF	gnl|CDD|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.38985e-114
LR134384.1|VEH14436.1|476745_477666_-|Transposase-DDE-domain	gnl|CDD|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.71265e-79
LR134384.1|VEH14452.1|493850_495035_-|enterobactin/ferric-enterobactin-esterase	gnl|CDD|199894	cd11294, E_set_Esterase_like_N, N-terminal Early set domain associated with the catalytic domain of putative esterases. E or "early" set domains are associated with the catalytic domain of esterase at the N-terminal end. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term esterase can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminal domain of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others.	1.19497e-34
LR134384.1|VEH14437.1|477923_478244_-|O-6-alkylguanine-DNA:cysteine-protein-methyltransferase	gnl|CDD|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	5.57723e-31
LR134384.1|VEH14450.1|492470_492812_-|Phage-related-protein	gnl|CDD|377579	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891). This family consists of hypothetical bacterial proteins of unknown function as well as phage Gp49 proteins.	2.91133e-15

Protein sequences

>LR134384.1|VEH14444.1|483816_485703_-|Cadmium,-zinc-and-cobalt-transporting-ATPase
MAHEAHHHEHEEEGMNWGLIIASAVFLVIGLLLDKLPMFWFINPYLIFFIYIVAFMPVGLPVMHKAWTAIKHEHDFFSEFMLMSVAAVGALYLGEYPEATAVMLLYCIGEGLQDRAVDRARDNIKSLLAFRPDFARMPDGRKERPENVEIGTKIEVRPGERVPLDGRLLESSATFNTAALTGESMPRLIEAGQEVMAGMIATDSVVWLRVVRKANESAISRMLKMVEEATERKAPTENFIHRFAHIYTPAVIALAFLVVIVPWMVSLFTAFNYYFSVWLHLALVFLVISCPCALVISVPLSYFAGIGAASRRGILFKGSNSLDAVTKLDTAVFDKTGTLTTGTFQVEKTVGLSEEDMALVAAVEAVNSHPIAQAIVKSMQGKELIDVDKNQIENVPGYGMKYKTCLMGTLKLLKQEGVNYDEALESVAETIVAVAEDKLFKGYILLADTPKAGIFTLPKRLKAQGIKMMQVLSGDKQALIDRLVVQFEDAKDYVKGYGDLLPEHKVAHIEALKHDGREVAFIGDGINDAPVLALSNVGFAMGKMGADMAVETADVVIQTDDPLKVGEAIAIGRRTRRIVLQNIIFAIGVKVLVMLLGVLGMATLWEAVFADSGVALLAVMNSMRALKK
>LR134384.1|VEH14443.1|482813_483635_+|CAAX-amino-terminal-protease-self--immunity
MNKTGKQILHAGLYLVVFILIQFFVQIVVVGGYMLFKHLPLADLRTVIAENTAVTIASTIISSLITIALFLVLGWTSKSRDYLSSRPWTTLMWVVLAAIGIIIPASGLEELFKVDMPEQLEVLFTRMMHEPLGYVAIGILGPLAEEIVFRGAILRTLLKLFGSKPWIAIAISAAVFGLVHGNSAQFLHAFLLGLLLGWMFYRTGSIVPGVVLHWVNNTIVYVMANLMPGFENATLSQLANGKPVVIALYIFFSLCILVPALVQLNKRLARAKM
>LR134384.1|VEH14442.1|481872_482814_+|Riboflavin-biosynthesis-protein-ribF
MNTIFLSEENNAIAPCVATIGFFDGVHRGHQYLIKHVIDKAKACGLASTVITFDRHPRQVLHSDYVPQLLTTLENKLLLLSKTGIDNAAVLPFDEATAHLSAFDFMRQVLHDRLNVKQLIIGYDNRFGHNREEDFEDYVRYGNELGIEVIHNQAFVLNGVNVSSSVIRSFLQAGEIGMATLCLGYSYTLVGKVVHGFAQGRKMGFPTANIDTTESGQLVPAPGVYAVKVKIENTVTLLHGMMNIGMRPTFDGSKLTLEVNIFNFQGDLYDKQLQVVFIHRIREERKFTNALGLAEQLQKDRLQIEEQFKKEIE
>LR134384.1|VEH14441.1|479998_480712_+|Transposase-and-inactivated-derivatives
MDVCKVLDEIDEKKREDVEEVTLDLSDSMRKIVRHCFPKAKRVIDRFHIQKLAIDAVQQMRIEHRWAALQEANEEKENAKLEKRAYQSVTFENGDTRSELLVRSRYLLFKSSEKWTDEQKLRAKILFREYPDIKKAYGLSHSLRMIFAKNTVKDAARLSLAKWYNKVEEANFHSFNVIAATIYEHYDDILNFYINRATNAAAESFNAKIKLFRANVRGVVDKSFFLFRIAKLYAYPH
>LR134384.1|VEH14440.1|479719_479962_+|Uncharacterised-protein
METSPVTCRTLEEFYHINGHSFEKQYKEILSGYRSWEQLAHAQKWLLFENNIGKSIAIDETSLSNGELYTIVTNRDRHGR
>LR134384.1|VEH14439.1|479367_479754_+|Uncharacterised-protein
MEEKNLYQLAEFVLPSDILHYFSIVKIEPDSSLLRIYLDEKMEKELSEVLHFESKGFMDAVEVTDFPIRDHKVILVLRRRRWIDTRTGKSFSLPLQIDITASGTRYSKEFGAFLKETYGDVPSDLPYA
>LR134384.1|VEH14438.1|478230_479043_-|Uncharacterised-protein
MNPIKAFLCVVCCLSASNGMASGNPNGAPKHWALQASFGGTTLADDTSDGQDFYIGDEEGNYFALSADYYLNPHLVLTGNLYYEQDGIATQYAAGIGLKKVNMLGLEGGIKWYFCPQKWVVQPHIGGLIQTNFLNLKRMQGSETHVLQQAYPGSHVQMNYDVQCPAIALKPKIGVDIRIISSVSLCFAYDIGFGLGGHHRADMRFLDLPFTGQTCQYQADNIRTTVSLGLKIDFPTRPVSGKTVNNLFMILSAWLESKSQNRSTFSHGSF
>LR134384.1|VEH14437.1|477923_478244_-|O-6-alkylguanine-DNA:cysteine-protein-methyltransferase
MAHFDFELFRQEVANIVSQIPRGYVLTYGRIARLSGYPSHARQVGRALHGMTDKAIPCHRVVDSVGRTAPNWPAQRTLLAAENVCFKANGNVDLRRSQWDYEAEEV
>LR134384.1|VEH14436.1|476745_477666_-|Transposase-DDE-domain
MITTDKVTEIFCILDEFCKNLDAELTKNLHIAPIDEGYKRMRNRKGQMSKSEIMTILLCYHFGSFRNFKHYYLFFIKEHLASYFPKAVSYTRFVELMPRVFFELMAFMRIQGFGKCTGISFVDSTMIPVCHNMRRNFNKVFDGLAKNGKGTMGWCHGFKLHLLCNEMGDVLTFCLTPANVDDRDPRVWQVFTKVLYGKVFADKGYIKQEFFENRFNQGIHLVHGIKSNMKNKLMPLWDKMMLRKRYIIECINELLKNKANLVHSRHRSVHNFLMNLCAALAAYCFFENKPEALPVRIEKSRKLELF
>LR134384.1|VEH14435.1|476294_476546_-|Uncharacterised-protein
MKIERLKKEAHEFKLLKEEITTLLMDTESFITQGKVKDAKEALDAVRNKIIRIKDANIRKHYIQAQEALTKLENTLEKKDLHE
>LR134384.1|VEH14445.1|486312_487347_+|Holliday-junction-ATP-dependent-DNA-helicase-RuvB
MTEDFDIREERLSTEEKDFENALRPLRFADFNGQKKVVENLEIFVEAAKYRSEPLDHTLLYGPPGLGKTTLSNIIANELGVGFKITSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGMLTAPLRARFGINMHLEYYDPETLERIIRRSAMLLKVPIDDEAAIEISRRSRGTPRIANALLRRVRDFAQVKGNGTITNEIAHIGLQSLNIDQYGLDEIDNKILLTIIDKFRGGPVGVSTIATAIGEDSGTVEDVYEPFLIMEGFIKRTPRGRMATPLAYEHLGRNPYMGNVMEPRLFE
>LR134384.1|VEH14446.1|487776_488901_+|Predicted-ATPase-(AAA+-superfamily)
MKTINNPFITYGYKGNRYFCDRENETKKLIEALQNDRNVTLISPRRVGKTGLIKHVFSQIERQDKHVKCFYIDIFATKNLEQMVQLMARNILGHLDSTPQAALKRLQEFFGSLRPTVSFDQLTGLPSVSLDIKPTEEAQTLKRIFDYMQQSKYRCYVAIDEFQQILSYNNQGIEATLRSYIQFLPNVYFIFAGSMQHLMEEMFTSANRPFFQSSQIMLLDNVPADKYLSFANGFFKSQKRSISEEVFSQLYHKVDGITWYVQTILNRAYQYAEASLTDDFFGQIVDELVCEQKPVYENYYASLTEMQANLIEAVAKEGCVAAPLAHQFIAKYGLKATSSVRTALKALVDRQFIYRKPEGYVVYDRFFGMWLSRL
>LR134384.1|VEH14447.1|489027_489540_+|Uncharacterised-protein
MKKMFYCLAMIGLFSVSSCRSIQQSEGIGQADSIHVEYCGMAGTTRYVINHSDTIMMLKGNFLHDIHGVECPSLFEPVRKVASDDVPVIQRLAHQLFVERSKPDTLWTKPYQYGMTCLPILSVHVFKKEKETVYRYDTGEEKNGIVYSTSVQIKYSPAFLEFTHRLRKCF
>LR134384.1|VEH14448.1|489829_491911_-|Outer-membrane-cobalamin-translocator
MNKTVFNKRCRIRFKHFTNKGYALFSCLGREVIVGTLSVATLTCAKAESISNDVQKADTSLYQGGKAMLLNGVSITASRAPLTQSQQSRMVTVLSREDVQAAPVHSVNDLLKLVSGVDVRQRGPLGAQTDVSIRGGNYEQITLLLNGINIGDPQTGHNAADFPVDISEIERIEVLEGPAGSVYGTSSLLGAINIVTKANTRSSASVHAASGSFGTVTSGGRINVARGKWNNQWSASFTRTDGYNRNKEGKLNTDLRTQKAFYQGFYNDDDLSMSWHAGLSNKDFGSSTNYSAKYDDQFEHTFKTFMALQAETRKGTIKWHPAIYWNHNYDRFELFRDRADRYPFNYHRTDVYGVNVNAYFDWTLGRTAFGAELRNEDLVSTNLGNPLSHPKHVKGTDNVMYKVGFNRTNIQFVAEHNLLIGRFTMSAGVVAVKNSWAEMNMKVYPSVNASYRLGDAWKVYASYNTSLRMPSVTELFYSVGGHKADPNLKPEELAAVEMGVKYSKNGLSGSVSGFHNHHTNLIDWIDDGEKDAAGAVLWKSVNFGTINALGVEMALNVDFRQLLPTQKLLKTFNLGYCFIQQHQIEAAGIHSLYALEYLKNKVTGNLQLNLWKQLDLGINYRFQHRMGSYKDPAGVLHRYRSYGLLDARLAWNMPKYSLYLEGNNLLNRSYVDVGNVKQPGCWVMAGAKMDINL
>LR134384.1|VEH14449.1|492148_492466_-|transcriptional-regulator,-y4mF-family
MMIQQKLYSHEEMLNKVLGEKGTPERNQYEAELKSFLMGDAIKKARQSCNLTQEQLGERMGIKKAQVSRIEGGKNLTFSTIARAFKAMGIHANFEVKGVGKVALW
>LR134384.1|VEH14450.1|492470_492812_-|Phage-related-protein
MEQKPRFKIVYTEEAIDFLRHLPQKVKAKVVYNIGKSMYVLDNSLFKKLENTDIWEFRTLYNGNAYRLFAFWDTEEDTLVIATHGMIKKSQRTPLKEIEKAEAKRKEYFMNKG
>LR134384.1|VEH14451.1|492907_493555_-|Phosphoglycolate-phosphatase
MKTRIVILDFDGTLGDSQTLITRTMRETLQRVGLPEKTEEECAKTIGLPLKQCFLALMDMTDEMAEKCTSAYREIFERNNIHGAVPAFPGVIKTIKKLHDDGLTVTIASSRGHHSLAAFVEELHLEPYISLILGADDVEKAKPNAEPVLKTLHHFGLQPAEALVVGDTAFDILMGRNAGTKTCGVTYGNGSKEDLQAALADYIIDEFAEIEQCLE
>LR134384.1|VEH14452.1|493850_495035_-|enterobactin/ferric-enterobactin-esterase
MILCMATLTTSSFAQQNIFNAQAPMSPEVNTDKTVTFRIMAPEAQKVQVTGDFLPTQKVKTPHGEYDVAGIADLNKDAKGLWTYTTKTPLKPELYQYNMVVDGVKVADPSNVYVLRDVANVASIFFIDGGRADLYKVNNVPHGTVSKIWYDSPTAGTTRRCTVYTPAGYETSREKYPVLYLLHGMGGDEQAWSELGRAVQILDNLIAEGKAKPMIVVMPNGNISQVACPGETPEGFKVPTMQLPKTMDGYFEQAFPDLMKFVERTYRTQNDKAHRAIAGLSMGGFHSLYLSINHPDTFDYIGLFSAAIDKQQQGGIEEIYANREQKLNTLFMKRPKLFWIGIGSTDFLYKSNADLRHYLDSKGFKYTYMETEGGHIWRNWRIYLSEFVPKLFKQ
>LR134384.1|VEH14453.1|495183_495720_+|LOG-family-protein-yvdD
MKIGVFCSANNQIDADYFRLTEDLGAWMAREGHSVVYGGCNCGLMETIGKAVHDGGQMAIGVVPRIVEKGGRVSSSVDVNIACDNLSDRKDLILAQSDVLIALPGGIGTLDEVFTVAASHTIGYHAKKVILYNMNGFYDSLIVMLNDLQGCGMIRGKWTDYIQVATSLDEIAALIARI
>LR134384.1|VEH14454.1|495729_496404_+|Orthopoxvirus-protein-of-uncharacterised-function-(DUF830)
MKKVYRVCLPFFIFLLLFSCGTIRRNETERQAGFHERQFKTGDLLFAYDPRGNAITAVTSGYHGLKIDHVGFVVKQKDTVFVAEAISSKGVTLTPLADFLAHNTMQDEHYPSVVRGRLRVKFNETVLRKRLNHYLGLPYDSLYMPDDSAMYCSELVQKCFVLTDGKTVFPTIPMSFHDADGHITPYWKAFYARHGQSVPEGMPGTNPGQLSREKVVHIRLSRVF

Crispr_ID: LR134384_6

• CRISPR_ID: LR134384_6
• CRISPR_location: 643797-643892
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134384_6

Consensus_repeat	Method
CTTTCAAAAGCATAACTGCTACGCAGTTAC	CRISPRCasFinder

spacers of LR134384_6

>6.1|643827|36|LR134384|CRISPRCasFinder
ATTGCAGGCTCATATCTCGCCTGTTATCTTGCCACA

CRISPR arrays and Neighbor proteins around LR134384_6

CRISPR arrays

The CRISPR arrays of LR134384_6

>merge|LR134384|6|643797-643892|CRISPRCasFinder
CTTTCAAAAGCATAACTGCTACGCAGTTACATTGCAGGCTCATATCTCGCCTGTTATCTTGCCACACTTTCAAAAGCATAACTGCTATGCAGTTAC

>LR134384|6|6|643797-643892|CRISPRCasFinder
CTTTCAAAAGCATAACTGCTACGCAGTTAC	ATTGCAGGCTCATATCTCGCCTGTTATCTTGCCACA
CTTTCAAAAGCATAACTGCTATGCAGTTAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH14568.1|645478_646492_+|PAP2-superfamily	unknown	unknown	gnl|CDD|379588
LR134384.1|VEH14567.1|644482_645478_+|UDP-glucose-4-epimerase	unknown	unknown	gnl|CDD|223528
LR134384.1|VEH14570.1|648093_649935_+|Putative-multidrug-export-ATP-binding/permease-protein-SAV1866	unknown	unknown	gnl|CDD|224055
LR134384.1|VEH14576.1|655565_656621_-|CDP-Glycerol:Poly(glycerophosphate)-glycerophosphotransferase	unknown	unknown	gnl|CDD|224799
LR134384.1|VEH14569.1|646780_648076_+|(Dimethylallyl)adenosine-tRNA-methylthiotransferase-MiaB	unknown	unknown	gnl|CDD|237676
LR134384.1|VEH14562.1|637393_640384_-|bifunctional-preprotein-translocase-subunit-SecD/SecF	unknown	unknown	gnl|CDD|237276
LR134384.1|VEH14573.1|652962_653955_+|Arabidopsis-thaliana-protein-of-uncharacterised-function-(DUF821)	unknown	unknown	gnl|CDD|310354
LR134384.1|VEH14566.1|642792_643068_+|NS1	unknown	unknown	gnl|CDD|259853
LR134384.1|VEH14564.1|640513_641605_-|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl|CDD|197318
LR134384.1|VEH14565.1|641616_642576_-|Rhomboid-protease-gluP	unknown	unknown	gnl|CDD|223777
LR134384.1|VEH14575.1|654982_655087_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14561.1|636946_637138_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14571.1|649957_651913_+|Lipoteichoic-acid-synthase-1	unknown	unknown	gnl|CDD|293739
LR134384.1|VEH14574.1|654044_654908_+|LPS-biosynthesis-protein	unknown	unknown	gnl|CDD|368225
LR134384.1|VEH14560.1|634980_635862_+|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl|CDD|238572
LR134384.1|VEH14572.1|651930_652875_+|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl|CDD|153246
LR134384.1|VEH14559.1|633594_634773_+|putative-transporter	unknown	unknown	gnl|CDD|340952
LR134384.1|VEH14563.1|640403_640499_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14557.1|629956_631693_+|SusD-family	unknown	unknown	gnl|CDD|369630
LR134384.1|VEH14558.1|631718_633449_+|Levanase-precursor	unknown	unknown	gnl|CDD|350134

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH14568.1|645478_646492_+|PAP2-superfamily	gnl|CDD|379588	pfam14378, PAP2_3, PAP2 superfamily.	8.91666e-13
LR134384.1|VEH14567.1|644482_645478_+|UDP-glucose-4-epimerase	gnl|CDD|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.27041e-51
LR134384.1|VEH14570.1|648093_649935_+|Putative-multidrug-export-ATP-binding/permease-protein-SAV1866	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.47888e-158
LR134384.1|VEH14569.1|646780_648076_+|(Dimethylallyl)adenosine-tRNA-methylthiotransferase-MiaB	gnl|CDD|237676	PRK14329, PRK14329, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
LR134384.1|VEH14560.1|634980_635862_+|5-dehydro-2-deoxygluconokinase	gnl|CDD|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	2.24644e-76
LR134384.1|VEH14573.1|652962_653955_+|Arabidopsis-thaliana-protein-of-uncharacterised-function-(DUF821)	gnl|CDD|310354	pfam05686, Glyco_transf_90, Glycosyl transferase family 90. This family of glycosyl transferases are specifically (mannosyl) glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, EC:2.4.2.-.	2.47863e-08
LR134384.1|VEH14566.1|642792_643068_+|NS1	gnl|CDD|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	4.47604e-36
LR134384.1|VEH14564.1|640513_641605_-|Uncharacterized-protein-conserved-in-bacteria	gnl|CDD|197318	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.	1.06953e-82
LR134384.1|VEH14565.1|641616_642576_-|Rhomboid-protease-gluP	gnl|CDD|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	7.63496e-30
LR134384.1|VEH14576.1|655565_656621_-|CDP-Glycerol:Poly(glycerophosphate)-glycerophosphotransferase	gnl|CDD|224799	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane].	4.6042e-19
LR134384.1|VEH14571.1|649957_651913_+|Lipoteichoic-acid-synthase-1	gnl|CDD|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	1.33916e-63
LR134384.1|VEH14574.1|654044_654908_+|LPS-biosynthesis-protein	gnl|CDD|368225	pfam04991, LicD, LicD family. The LICD family of proteins show high sequence similarity and are involved in phosphorylcholine metabolism. There is evidence to show that LicD2 mutants have a reduced ability to take up choline, have decreased ability to adhere to host cells and are less virulent. These proteins are part of the nucleotidyltransferase superfamily.	5.4816e-52
LR134384.1|VEH14562.1|637393_640384_-|bifunctional-preprotein-translocase-subunit-SecD/SecF	gnl|CDD|237276	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed.	0
LR134384.1|VEH14572.1|651930_652875_+|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl|CDD|153246	cd07984, LPLAT_LABLAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.	4.0559e-43
LR134384.1|VEH14559.1|633594_634773_+|putative-transporter	gnl|CDD|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.83091e-67
LR134384.1|VEH14557.1|629956_631693_+|SusD-family	gnl|CDD|369630	pfam07980, SusD_RagB, SusD family. This domain is found in bacterial cell surface proteins such SusD and SusD-like proteins, as as well RagB, outer membrane surface receptor antigen. Bacteroidetes, one of the two dominant bacterial phyla in the human gut, are Gram-negative saccharolytic microorganisms that utilize a diverse array of glycans. Hence, they express starch-utilization system (Sus) for glycan uptake. SusD has 551 amino acids, and is almost entirely alpha-helical, with 22 alpha-helices, eight of which form 4 tetra-trico peptide repeats (TPRs: helix-turn-helix motifs involved in protein-protein interactions). The four TPRs pack together to create a right-handed super-helix. This is predicted to mediate the formation of SusD and SusC porin complex at the cell surface. The interaction between SusC and TPR1/TPR2 region of SusD is predicted to be of functional importance since it allows SusD to be in position for oligosaccharide capture from other Sus lipoproteins and delivery of these glycans to the SusC porin. The non-TPR containing portion of SusD is where starch binding occurs. The binding site is a shallow surface cavity located on top of TPR1. SusD homologs such as SusD-like proteins have a critical role in carbohydrate acquisition. Both SusD and its homologs, contain about 15-20 residues at the N-terminus that might be a flexible linker region, anchoring the protein to the membrane and the glycan-binding domain. Other homologs to SusD have been examined in Porphyromonas gingivalis such as RagB, an immunodominant outer-membrane surface receptor antigen. Structural characterization of RagB shows substantial similarity with Bacteroides thetaiotaomicron SusD (i.e alpha-helices and TPR regions). Based on this structural similarity, functional studies suggest that, RagB binding of glycans occurs at pockets on the molecular surface that are distinct from those of SusD.	1.5775e-39
LR134384.1|VEH14558.1|631718_633449_+|Levanase-precursor	gnl|CDD|350134	cd18622, GH32_Inu-like, glycoside hydrolase family 32 protein such as Aspergillus ficuum endo-inulinase (Inu2). This subfamily of glycosyl hydrolase family GH32 includes endo-inulinase (inu2, EC 3.2.1.7), exo-inulinase (Inu1, EC 3.2.1.80), invertase (EC 3.2.1.26), and levan fructotransferase (LftA, EC 4.2.2.16), among others. These enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	1.78046e-155

Protein sequences

>LR134384.1|VEH14566.1|642792_643068_+|NS1
MNKTELIDKIAAGAGLSKADAKKALDATTAAIKEALVAGDKIQLVGFGTFSVNERPAREGINPATKAKIKIAAKKVAKFKAGAELADAVNA
>LR134384.1|VEH14565.1|641616_642576_-|Rhomboid-protease-gluP
MMRIPTITKNLLIVNVVAFLMMWIFQGMNFMAGGPIDLNNIFGLHFFLASDFHFYQLVTYMFMHANLEHIFFNMFALWMFGMVVENVWGPRKFLFYYILCGIGAGVFQEAAQFVSFYMTVSSQVPSFALSQFPEIAHQLSPMLNNWTTVGASGAVYAILLAFGMIFPNEKLFIIPIPVPIKAKWFVMIYAGIELFAAMATTGDNVAHLAHLGGMVVGFFLIRYWRRHPGAHYNRSQGQQFFNNMKRKWDNRGKQQDLGSTNTRANGNVYNSHQSDWDYNRREREDQKEVDRILDKIRKSGYDSLSADEKRKLFDSSKKN
>LR134384.1|VEH14564.1|640513_641605_-|Uncharacterized-protein-conserved-in-bacteria
MLRNFKRFTLQVVAGANLATIFMMLFVGFSDRFNPVNHQVLANAGLVFPVFLAINFGFLIFWLCFKKKGALLSLAGYLVCYVPVRTYIPFNIPHSIPNDAIKIMSYNVWSFAGWERHADGKFPILEYIREQQPDILCLQEAMTNEIGQARVDSVLNKIYAYKDTMKFSPSSDCIALYSRYPIVSHERIVYPSRGNLSGAFEIKIGNDTVIVVNNHLETTGLSNEDKREFKSMVKGNLLTSDAKQASYRLIDKLGEASAKRAVQADAVALYISKHSDRSMIVCGDFNDSPISYARHTIAKGLTDCFIATGNGLGVSYHNGGMYVRIDHIMCSKDWQPYGCKVDRSIGESDHYPILCWLKKQGKH
>LR134384.1|VEH14563.1|640403_640499_-|Uncharacterised-protein
MCINFTDCKKICIFARLHTIGDTIVLSIEKQ
>LR134384.1|VEH14562.1|637393_640384_-|bifunctional-preprotein-translocase-subunit-SecD/SecF
MQNKGIVICTAVLLTLASIFYLSFSVATSYYDSQAAKLKDPIAQQDYKDSVKYLGIYSYQKCLETQIGLGLDLKGGMNVILEISVPDVLETLADHKTDPAFTKSMKQARAEEETSQSDFISLFLKYYRQNAPGHRLAEIFATQQLQGKINPQSSDSEVEKVLREEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRKLLQGSANLEFWETYNAEEVIPYLQQLDSRLANDASNDTTTAQQAQKKAVVKGVKFQVKNADKETVAQKSNAQMEAAKKQHPLLAMLQPTGQNSLALVGYASVRDTAAIDKLIYGQTAKQVLPSDIKLLWSATPEDGIKAKNIFGLYAIKVTSNNGQAPLQGDVVVDAKDEFNHVTGQPEVNMTMNTEGARRWAALTKANVGKAIAIVLDDAVYSAPRVNGEIDGGSSAISGNFTVEMTKDLANTLKSGRMPAPARIVQEEVVGPTLGAASIQQGIVSFAIAFVLLIIYMVMMYNFIPGMIANTALVINVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRVGKGMKQAVAAGYSNAFSAIFDSNLTSLITGVILYVFGTGPIQGFATTWIIGIVCSFFSAVFLTRLVYEHQLKKDRWQNLKYWTGISKNLMQGKNFKFMSMYKGTFTVAVIAAIVFIGSFFVRGLAQSIDFTGGRNYVVQFEKSTEPEEVREVLTHIFPGCTTGALSLGTDNKTIRISTNYKIESNSPTIDDEAETKLYQGLKKAGLISQKSVEAFKNPDVRAGGSIISSSKVGPSVAKDVTYGAIISVIIALVAIFLYILIRFRNVAFSAGSTIALVLDALTVIGLFSLLQGLLPFSLEVDQTFIGAVLTVIGYSINDKVVVFDRIRENLKLHPKQDIQVLFNDSINQTLARTINTSFSTLIVLLVILLLGGKSIQPFAFAMTIGVIFGTLSSIFIASPIAYLLMGKSIKDRRTEETATEAVEVK
>LR134384.1|VEH14561.1|636946_637138_-|Uncharacterised-protein
MNEPRHLRQITLSFASNHVLISIKLCVNLPQKAMCFASKCVTTSLFRRCNLFLLVFIPLFFRS
>LR134384.1|VEH14560.1|634980_635862_+|5-dehydro-2-deoxygluconokinase
MQKRFIVGLGEALWDCLPEGSKLGGAPANFAYHTHQFGFDAIAISALGNDILGDQTRKELDQAGLNYIMPIVNYLTGTVQVTLDEEGVPTYDIKENVAWDNIPFNDEIEEVAKNARAVCFGSLAQRNSTSRETIQRFLAATPKDCLKIFDINLRQNFYTKEIIKESLTACDILKINDEELVTIGRLFGYPGLDMENKCWLILGKYNLKMLVLTCGVNGSYVFAPATKSFQETPTVEIADTVGAGDSFTATFCAATLAGKSIKEAHKLAVDVSAYVCTQVGAMPVLPEKFTKLL
>LR134384.1|VEH14559.1|633594_634773_+|putative-transporter
MDKTNKLAIIPVMLCFFAMGFVDLVGTASNFVKADLGLNDAQANIFPSLVFFWFLIFSVPTGMLMNKIGRKKTVLLSLIITFISLLLPLFGESFILMLIAFSLLGIGNALMQTSLNPLVSTVIKGGNLASTLTFGQFIKAIASFLAPYLATWGATAALPSFGLGWRILFPIYMVIGVIATLLLSGTPIEEEAVIVENELPSRNIADEYIACFKLLGTPIVLLSFIGIMCHVGIDVGVNATAPKILQEKLGLTLSAAAPATSFYFLFRTLGCLTGSIILRFMKTRTFFIISVVMMALSMLGLYFGTTKWMLYTAIALVGYGNSNVFSMVFAQALECVPTKKNEVSGLMIMGLFGGTVFPLFMGLASDAVGQAGAVAVMAVGVVYLFTYIRSLS
>LR134384.1|VEH14558.1|631718_633449_+|Levanase-precursor
MRTLHNLVLAAVCAASSLTVQAQTPGALHVLSDNHAFYRLQQKHKFLLLPIEEKEENAHLRIIKNNQVVKELNCRLAIDKTDYSVPLKLDENQDSEILIDITFSNNRRSTGSIKDFVAWKELKTSDSFDTTNREKYRPIYHHTPLWGWMNDPNGMFYKDGVWHLYFQHNPYGSQWENMTWGHATSKDLVHWTFEGDAIRPDALGTIFSGSAVVDKNNTAGFGNGAVVAMYTSAGASQMQSIAYSTDNGKTFTKHANNPVLTADIPDFRDPHMFWNEDIKAWNLILAAGQEMNIYSSKDLKHWTLESSFGHGYGNHDGVWECPDLMKLPVNGTGKEKWLLICNINPGGPFGGSATQYFVGFFDGHKFTCESKPETTKWMDYGKDHYATVTFDNAPDNRHVAIAWMSNWQYANQVPTMQFRSANSVPRDLGLFTDGGETYVSVVPSKELLALRGAKTGKPTEACELVINIKSQSKPTVITLSNDKHEQVVMTYNPKERTFNMDRAQSGNTAFSDMFKATTVAPTHGTISQLRVFIDKCSIEAFDATGKMAMTNLVFPTNPYDKLTVKGTARTVIYTLK
>LR134384.1|VEH14557.1|629956_631693_+|SusD-family
MKKSYIAILLLAGSFTLSGCNDFLDYKPTAVVDENKAFSDPEAMTNSAYAMLGDCWYQYPFNLWTYGDVTSDDCLKGGSGVNDTDYHPFEIWKNMTSTIGPLDELWYRLFAAISRCNRALVSLNKYGNRKLGETETKQRIAEVKFLRAHFYYKLITVFRKVPWIDEEVFKNNTQEQTHNDAFTYQQLFEKIIADFQTAYDVLPETQTEGGRVNKIAAASYLAKCYLQLAWGDGYEQTTGISHINTSYMQKVVDYTDVVSHSHYGYLEDYGDIFLPEHKNSKESIFAVQCSDYKDDNTKFGRANWSNTLNGCWGIWSCGWDFHKPSQNLVDAFKTKNGLPEFEDFDQTPAHPVNGHPTTQKWDPRLFHTVGMPTFPYKYEKQYTLTKRNSRNPNDYGYYTSLKEVPQRSKGETYNSPWQAFAMNEYVFRYSDVMLMRAEALIELGRLTEARTIINAIRQRASNSINKHIAYAADQCEIALYPSSYFADKETARKCLRWERRLEMGMEHERFFDLRRWGIASKTLNHYFETEVKDDYEGMKFAQYYKDAHFTPEKNEFFPVPYNQLYYIPGLYTQNKGYN
>LR134384.1|VEH14567.1|644482_645478_+|UDP-glucose-4-epimerase
MKILVTGASGFIGSFIVEEALRREMEVWAAVRQSSSKKYLTDKRINFIELNLSSQKELEKQLAGHEFDYVVHAAGATKCLHTEDFFKVNTDGTRHLVQALLALKMPIRRFVYLSSLSVFGAIKEQQPYQEISEHDHPRPNTAYGKSKLMAEQYLDSIGNDFPYIILRPTGVYGPREKDYFLMAKSIKGHTDFSVGFKRQDITFVYVTDVVQAVFLALDHGRDGRKYFLSDGNVYQSSDFSNLIHDCLGRPWWIRIKAPVWVLRLVTFFGEHIGRMTGKISALNNDKYNILKQRNWRCNIEPTVDELGFHPQVDLAEGTRRTIAWYRENNWL
>LR134384.1|VEH14568.1|645478_646492_+|PAP2-superfamily
MANKRKNNTFTWPWQGKGWTAEHKGLLPFEWVVLAYMAFTLLIVLFTSTKLVNPDAMIWGRVRVGAMTIALWAVYRMMPCKLTMFARVAAQMGMLAWWYPDTYEINRMFPNLDHLFATWEQQLFGFQPALDFARAFPSPIVSELMDCGYAAYYPMIAVVLLFYFFKRYGEFEKTAFIILGSFFLYYVIYDLLPVVGPTFYYKAIGLHNAAQGIFPNVGDYFNSHQDCLPSPGYAQGFFYDLVEDAKAAGERPTAAFPSSHVGVSTICILLAWHSGNRKLLFSLLPFYVVLCMATVYIQAHYAIDAIAGLITGVVFYAVLSLSSNLKLTPGPSRRDGR
>LR134384.1|VEH14569.1|646780_648076_+|(Dimethylallyl)adenosine-tRNA-methylthiotransferase-MiaB
MNVADSEVVASVMKMAGYDVCENEEEADAIFLNTCSIRENAENKIYNRLDTLHAEQKKGRQLILGVLGCMAERVKDDLIKNHHASLVCGPDSYLNLPTMIAECELGHATVDTNLSTTETYRNVLPQRIGGNRVSGFVSIMRGCNNFCHYCIVPYTRGRERSRDVESILAEVKDLHDKGFKEVTLLGQNVNSYGLLPNGKRPENGTSFAELLRKVAQSVPDMRVRFTTSNPEDMTEDILHAIAEEPNLCKHIHFPAQSGSNKILKLMNRKYTREEYLDKVAAIKRIIPGCGLTTDIFVGYHDETEEDQQLTLSLVKEVGFDSAFMFKYSERPGTYAAKHLPDNVSEEVKIARLNELIHLQTAISGEQNKKDEGSEFVILTERFSKKDRNHLMGRTEQNKAVIIEKGNHHIGEFIKVRITGSTSATLFGEEIK
>LR134384.1|VEH14570.1|648093_649935_+|Putative-multidrug-export-ATP-binding/permease-protein-SAV1866
MKEFLQVLRRFVPPYKKYLVWSVIFNILSAVLNIFSFMTLIPILQILFKTSDVKPVTKLITWDNVHGVESMVEMLTNNANYYIQHFIVTTGEANTLLIIGILLAFMTMLKTAAYFLSSATIIPIRTGVVRDIRNQLYQKINALSLGFFSEERKGDIIARMSGDVQEIENSIMASLDMLFKNPILIISYFIALIVTSWQLTLFTIIFVPIFGWFMGFVGRKLKAQSIEAQGLWSDTMSQVEETLGGLRIIKAFCAEKLMNERFDKVNSNYRKNVMRVNIRQQLAHPMSEFLGTVMIIIVLWVGGMLVLNNHTLTGPKFIYYLVMLYSIINPLKEFSKAGYNIPKGLASMERVDKILKAEISIKEKSNPHPIMAFEHEIEFRNVSFKYDQQWVLKDINLVIPKGKMIALVGQSGSGKSTLVDLIPRYYDVQKGEVLIDGINVKDLGIHDLRRLIGNVNQEAILFNDTFKNNIKFGTVEATDEQIANAARIANAYDFIMQSENGFDTNIGDRGGRLSGGQRQRVSIARAILKNPPILILDEATSALDTESERLVQDALTHLMKTRTTIAVAHRLSTIRNADEICVLHEGRIIERGTHEELIRNNGYYKKLHDMQQV
>LR134384.1|VEH14571.1|649957_651913_+|Lipoteichoic-acid-synthase-1
MKRLLKSTFASPIALIINLLLAYLIYFFARLTYVLVNYSYFAEGIRNDAIGQWIKGSLMFDTTAILYTHIPYIILMLFPLWLKETSIYHHICKWLFVVVNAIALAINLADAVYFPFTLRRTTTSVFREFSNENNITGIILHNTLTHWYLLLVFGVIIWAVWKLYAMPRTDYRDFVSAKDRWLYTVKLFVCFALAGIATVAGCRGGLQSGVRPITISNANQFVERPTDCAVVLNTPFALIRTIGKSDFEIPPYYTSLYEAEKVYSPVYITIPKGQIKKKNIVILIVESFGREYIGGFNKDFFDGKYKGYTPNVDRLIEKSLVYRYSFCNGRKSIDGMPSILCSIPRFGEPFILTPASMNDYTGIPGLLSHWGYQTAFFHGANRGSMGFLAFSKKIGFQNYYGRQDYDEDPRFGGDKDFDGNWGIWDEPFLQYYCTKMGEMKEPFMTALFTVSSHDPFVVPNKYKNVYKEEHLPIQKCIRYTDMAIGKFFASASKQKWFKNTIFVLTSDHTNQSDHAQYKTDIGGFCSPIIIYDPSGDIKPQRVDGIAQQIDIMPTLLDYIGYHRPYIAFGTDLLGTPANETWAVNYLNGIYQYVKYGYVLQWDGKQTKAIYRLTDLLMEHNLVGKVKEQHQMETELKAIIYQYMYRMVKNKL
>LR134384.1|VEH14572.1|651930_652875_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MKKALLYIAYTIAYGFWWAMSLLPLWLLYCFSDLLYLLMAYVVRYRHAVIWSNLTSSFPEKTEAELHEIEHKFYHWFCDYLVETMKLMTISKQQIMKRMTFTGMETFNQVLSEGQSIGVYLGHIGNWEWITSMPYWAPNSLCCQLYHPLENEYFDRLFKFVRERQGAYCIPMQESLRKIIQFTHEGKPLVVGYISDQVPLWWNIHHWVDFLHHDTPVLTGAERIVKHTGQAFFYGHVTRVKRGHYNCEMRLISRNTKEMADFQITDLYYKELEKSIRNQPELYLWSHNRWKRTREEFNKNWEVKNGKVVRRKEE
>LR134384.1|VEH14573.1|652962_653955_+|Arabidopsis-thaliana-protein-of-uncharacterised-function-(DUF821)
MKMNRKLYYILHSGKNSKLRYYITSYLWISMPHCLLSWFRKAIISKAQHGNDWDEITKRVEYYNKLHRSEIDLPAFQQKAIKLSEQKKTGQSVYYLDAFRYAKSFPLHLKWWLQPGDVTWIPDIPAIVKSRPIKGNNANSVLLKLDRVRHFLFVNDRLKFTEKADKVVFRGLIGQFDSNTLKQNRYSFVKKFFGNPRFNIGVIDKGFNEWSTEKMTIREHLSYKFIMALEGNDVASNLKWIMSSNSIAVMPHPTYETWFMEGTLIPDYHYIEVKADYSDLEAKIDYYINHPDEAQSIINHAHEYVDKFRNPQRECIISMLVLDKYFRTTQ
>LR134384.1|VEH14574.1|654044_654908_+|LPS-biosynthesis-protein
MTEQKTRISDEETKKLQAYILDIMVNIDRVCREHHLRYYLLAGTMLGAVRHKGFVPWDDDADIALPRKDYNILIAHANEWLPKHIELVSGVQNPYYPYAFARIQNSETTYILRRSFNFIGGLPVDIFPLDGMTENPLKRKWHYMRYDFFVRLMYYNLRDPYKHGRGIDCLFIKMCHKLFSSAWLHRKLDKIQSEYDFDSSTLVADHDNAPDRGILAREVYGEPTPITFEGHTFMGVAKPDEYLKYCYGNYMEMPSELPPQNFRFLDLQLPYRSYLKQQNIKSKKEQH
>LR134384.1|VEH14575.1|654982_655087_-|Uncharacterised-protein
MAFCVIQFFFESRLAHASGSIKNKKDRQTKEILL
>LR134384.1|VEH14576.1|655565_656621_-|CDP-Glycerol:Poly(glycerophosphate)-glycerophosphotransferase
MRIVLFCENKYAIDILHPIQVEADREGGNEVLWYVHEKKISDFPLKHDVRWTTSMQETYDFMPEAIFVPGNIVPYYLPGVKIQIFHGYAAEKKDHWIIRRYFDTYFTQGPYFTNKFKELSLKYGDFEVLETGWPRQDWIAEHRHDFDEERLQLLKQYGKQQIVLYAPTFSPKLTSLPIIKDNLVKLCKQKDVLLLMKFHPLTRQEWVDEYKALATQYDNMVFVDDYSVTKYMLMADVMISDTSSTIYEFLLLDKPVVTLNAISKDIYWKNITDPNMLCDAIDEVVKNEDYIRLRKWVISNYDPYTDGKVAHRMLEGARDYIRRKGVPKKRKLNLWRQYTSIKTFGRIKKKK

Crispr_ID: LR134384_7

• CRISPR_ID: LR134384_7
• CRISPR_location: 671176-671266
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134384_7

Consensus_repeat	Method
TAATCATAAACTTCAAAGTTCAGAT	CRISPRCasFinder

spacers of LR134384_7

>7.1|671201|41|LR134384|CRISPRCasFinder
TTCAAACTTCAATGATATATTCCTAATAATTAAAGTCAGCG

CRISPR arrays and Neighbor proteins around LR134384_7

CRISPR arrays

The CRISPR arrays of LR134384_7

>merge|LR134384|7|671176-671266|CRISPRCasFinder
TAATCATAAACTTCAAAGTTCAGATTTCAAACTTCAATGATATATTCCTAATAATTAAAGTCAGCGTAATCATAAACTTCAAAGTTCAAAT

>LR134384|7|7|671176-671266|CRISPRCasFinder
TAATCATAAACTTCAAAGTTCAGAT	TTCAAACTTCAATGATATATTCCTAATAATTAAAGTCAGCG
TAATCATAAACTTCAAAGTTCAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH14586.1|665711_666974_+|3-oxoacyl-[acyl-carrier-protein]-synthase-2	unknown	unknown	gnl|CDD|274452
LR134384.1|VEH14584.1|664392_664989_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14583.1|663345_664386_+|lipopolysaccharide-core-biosynthesis-protein	unknown	unknown	gnl|CDD|340821
LR134384.1|VEH14591.1|671373_674034_+|DNA-mismatch-repair-protein-mutS	unknown	unknown	gnl|CDD|235444
LR134384.1|VEH14585.1|665356_665593_+|Acyl-carrier-protein-AcpP	unknown	unknown	gnl|CDD|179197
LR134384.1|VEH14592.1|674297_675023_-|dihydropteridine-reductase	unknown	unknown	gnl|CDD|380314
LR134384.1|VEH14596.1|678415_679033_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|238813
LR134384.1|VEH14594.1|677505_677598_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14582.1|662662_663265_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|379447
LR134384.1|VEH14595.1|677862_678369_-|N5-carboxyaminoimidazole-ribonucleotide-mutase	unknown	unknown	gnl|CDD|376377
LR134384.1|VEH14587.1|666963_668055_+|Ribonuclease-3	unknown	unknown	gnl|CDD|274024
LR134384.1|VEH14590.1|670741_671053_+|antitoxin-HipB	unknown	unknown	gnl|CDD|238045
LR134384.1|VEH14597.1|679042_680560_-|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl|CDD|235648
LR134384.1|VEH14593.1|675668_677504_-|4-hydroxy-3-methylbut-2-en-1-yl-diphosphate-synthase	unknown	unknown	gnl|CDD|179361
LR134384.1|VEH14599.1|681243_681405_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14588.1|669716_670007_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14581.1|660055_661546_-|Propionyl-CoA:succinate-CoA-transferase	unknown	unknown	gnl|CDD|274588
LR134384.1|VEH14589.1|670386_670737_+|Phage-derived-protein-Gp49-like-(DUF891)	unknown	unknown	gnl|CDD|377579
LR134384.1|VEH14598.1|680544_681210_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14600.1|682506_682914_+|GxxExxY-protein	unknown	unknown	gnl|CDD|275083

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH14586.1|665711_666974_+|3-oxoacyl-[acyl-carrier-protein]-synthase-2	gnl|CDD|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
LR134384.1|VEH14583.1|663345_664386_+|lipopolysaccharide-core-biosynthesis-protein	gnl|CDD|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	5.70052e-53
LR134384.1|VEH14591.1|671373_674034_+|DNA-mismatch-repair-protein-mutS	gnl|CDD|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
LR134384.1|VEH14585.1|665356_665593_+|Acyl-carrier-protein-AcpP	gnl|CDD|179197	PRK00982, acpP, acyl carrier protein; Provisional.	1.61151e-33
LR134384.1|VEH14592.1|674297_675023_-|dihydropteridine-reductase	gnl|CDD|380314	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN. A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	1.19191e-26
LR134384.1|VEH14596.1|678415_679033_-|Uncharacterised-protein	gnl|CDD|238813	cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.	0.00601984
LR134384.1|VEH14582.1|662662_663265_+|Uncharacterised-protein	gnl|CDD|379447	pfam14063, DUF4254, Protein of unknown function (DUF4254). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 195 and 207 amino acids in length.	1.09004e-91
LR134384.1|VEH14595.1|677862_678369_-|N5-carboxyaminoimidazole-ribonucleotide-mutase	gnl|CDD|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	2.30693e-74
LR134384.1|VEH14587.1|666963_668055_+|Ribonuclease-3	gnl|CDD|274024	TIGR02191, Ribonuclease_3, ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. [Transcription, RNA processing].	1.68088e-60
LR134384.1|VEH14590.1|670741_671053_+|antitoxin-HipB	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.62688e-12
LR134384.1|VEH14597.1|679042_680560_-|RNA-polymerase-factor-sigma-54	gnl|CDD|235648	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.	6.22786e-115
LR134384.1|VEH14593.1|675668_677504_-|4-hydroxy-3-methylbut-2-en-1-yl-diphosphate-synthase	gnl|CDD|179361	PRK02048, PRK02048, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional.	0
LR134384.1|VEH14581.1|660055_661546_-|Propionyl-CoA:succinate-CoA-transferase	gnl|CDD|274588	TIGR03458, Propionyl-CoA:succinate_CoA_transferase, succinate CoA transferase. This family of CoA transferases includes enzymes catalyzing at least two related but distinct activities. The E. coli YgfH protein has been characterized as a propionyl-CoA:succinate CoA transferase where it appears to be involved in a pathway for the decarboxylation of succinate to propionate. The Clostridium kluyveri CAT1 protein has been characterized as a acetyl-CoA:succinate CoA transferase and is believed to be involved in anaerobic succinate degradation. The propionate:succinate transferase activity has been reported in the propionic acid fermentation of propionibacterium species, where it is distinct from the coupled activities of distinct nucleotide-triphosphate dependent succinate and propionate/acetate CoA transferases (as inferred from activity in the absence of NTPs). The family represented by this model includes a member from Propionibacterium acnes KPA171202 which is likely to be responsible for this activity. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins represented by this model, possibly erroneously.	0
LR134384.1|VEH14589.1|670386_670737_+|Phage-derived-protein-Gp49-like-(DUF891)	gnl|CDD|377579	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891). This family consists of hypothetical bacterial proteins of unknown function as well as phage Gp49 proteins.	0.000112228
LR134384.1|VEH14600.1|682506_682914_+|GxxExxY-protein	gnl|CDD|275083	TIGR04256, conserved_hypothetical_protein, GxxExxY protein. Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.	2.46792e-42

Protein sequences

>LR134384.1|VEH14590.1|670741_671053_+|antitoxin-HipB
MKKLNSEKLAQLHTSSEHFDEKYGPTGSPERKAFEARANAYYYAELLKEQRKMQRLTQQQLAEMIGKKREYISQIERGNSDMQLSTFLQIANALGLRFAMVVG
>LR134384.1|VEH14589.1|670386_670737_+|Phage-derived-protein-Gp49-like-(DUF891)
MDEQIREIIYSEAYETYYNGLNERLQEKYDYVEHIIKTQRIVNSKFIKKIEGSDFYEARISVGSNEYRTVVFAVDAGNFVECSQVLFLNSFLKKDKKQYKKEVRFAEKLIENYLED
>LR134384.1|VEH14588.1|669716_670007_+|Uncharacterised-protein
MNPERVQLFRIYHIIGRNKTRTGFENHMLSFTRGGLVPRQPRAFKSITATQLHYRLISRLLSYYTFKSITAMQLLYGKCLIVRHNVHWHRIMTDNP
>LR134384.1|VEH14587.1|666963_668055_+|Ribonuclease-3
MLNNIIDRIKLPFRKEKELYSSLYAILGFYPRNISYYKLALMHKSIMRRNAKGKPVNNERLEFLGDAILDAIVGDIVYQHFPGKREGFLTNTRSKLVQRDTLNKLANELGISKLILSNGRSSSHNSYMGGNAFEALVGAVYLDRGYDACMNFMQHRILTQMINIDKVAYKEVNFKSKLIEWSQKNRVKLDFEILEQGKDKNGSPIFNYKVVIEGIDGCDGVGYSKKESQQLACKLTLEQLRKKPQFIDAVFAAKANRTKMEEEPVENVPSTELADNFIIPQGEQPVVREEEKHENVFREKVYEDRPAKKRRCSPMYNTDKEVGEKKTETHEDEFDLSDISARRQTDEEIIAAAEAAAFEEKTD
>LR134384.1|VEH14586.1|665711_666974_+|3-oxoacyl-[acyl-carrier-protein]-synthase-2
MELKRVVVTGLGAVTPVGNTPEETWKNLLEGKSGAAPITNFDTTNFKTKFACEVKGLNVNDYIDRKEARKMDRYCQLAMISAAQGIKDAGLDLEKEDLNRIGVVYGVGIGGIKTFQDEVTYYGQHSADGPKFNPFFIPKMIADIASGQISIQYGFHGPNYTTTSACASSSNALADAFNLIRLGKANIIVSGGAEAAICECGVGGFNAMHALSTRNDDPEHASRPFSASRDGFVMGEGSGCLILEELEHAKARGAKIYAEMVGEGASADAYHITASHPEGLGAKLVMMNALKDAGLKTEDIDYINVHGTSTPVGDISEAKAIKDVFGEHAYKLNISSTKSMTGHLLGAAGAVEAMVCVLSVKNDIVPPTINHVEGDDDEALDYKMNFTFNKAQKREVRAALSNTFGFGGHNCCVVFKKYAE
>LR134384.1|VEH14585.1|665356_665593_+|Acyl-carrier-protein-AcpP
MSEIESKVKAIIVDKLGVDEAEVKPEASFTNDLGADSLDTVELIMEFEKEFGISIPDDKAETIQTVGDAIKYIEENAK
>LR134384.1|VEH14584.1|664392_664989_-|Uncharacterised-protein
MKKIAIVILSLAFSIMNVSAQTTTDSIDKPVRNISAELLGPSNMLGVHYDSRFKGNKGWGYSVGLTWAYLSTDNFINDINRFNIISFVPRLNYLIGRKNKKLELGLGTNLGVVFGRNEYDAYKIEQQPDHSYQLVFDKHVKENRSFAFYYLFTNIGYRRQAPHGFMFHVGISTMFGFGGDHSIKNIYLSPYLGFGKSF
>LR134384.1|VEH14583.1|663345_664386_+|lipopolysaccharide-core-biosynthesis-protein
MKHILIIRFSAMGDVAMLVPVVASLARQYPDVHVTVLSRPFAHSFFENLAPNVSFMSADIKNEYRGIRGLNALYRRLLAKNFTEVADMHNVLRSEYLRLRFNMACFRVAHINKNRKGKRLLCRKENKVKVQQPTSFDNYAAVLARLGYPVKLEFQSIFPAEGGNLRRISNVIGEKKKFQKWIGIAPFAAHKGKIYPLEKMEKVVEKLIKTYPSCRVFFFGGGGKEREVLDTWAKRYANCTNASAVLGGMGDELILMSHLDVMVSMDSGNMHMASLVGTKVVSIWGATHPYAGFMGWRQSEENAVQLDMPCRPCSVYGNKPCLRGDYACMNNISPEMIIEKIAKLFN
>LR134384.1|VEH14582.1|662662_663265_+|Uncharacterised-protein
MSFTQDSNRIFNQAIHDYHVKDNIDTPFCNPFEEGTIENRLYLKCWIDTVQWHFEDIIRDPEIDPVEALALKRRIDKSNQDRTDLVEQIDSYFRELYKEVKVDADARINTESPAWAVDRLSILALKIYHMKEQAERTDATPEHVAKCKAKLSVLLEQQKDLSTAIDQLLEDIAAGRKYMKVYRQMKMYNDVDTNPVLYKK
>LR134384.1|VEH14581.1|660055_661546_-|Propionyl-CoA:succinate-CoA-transferase
MIYTRISAEEAAAMIQNDETVALSGFTPNGVAKAVFRELSKRARREHEAGHPFKVGIITGASTGQSVEGDMAAANAIKFRTPFSTNKDFREHVNAGEIDFEDMHLGHVAERLRRGFYGEIDWAIIEVSGFMQAGSKYRGYLTSAGGVVPTIVRMAKHVILELNTFHSPQSRLLHDVYEPARCPHRLPIMINHVCDRIGREFVEIDGDKIVGVVECCIPEEARSFKPVDEVTQKMGNFVADFLVSDLKRGLLPKEFLPVQSGVGVISNAVLEALGNHPAIPDFSVYTEVVQDAVINHMKKGKIIDASCSSLTVTNETLLDIYANMDFFSRHVVIRPSEISNSPEVIRRLGVIAMNTAMECDIYGHENSSHVCGSQLMNGIGGSCDYERNGYLSIFTMPSTIKGGCISTIVPMCSHVDSTEHDVDVIVTEQGVADLRGKGPLRRAQEIIENCAHPDYRPLLRDYLRIAGGGHEPQSLRSAFAFHDAYLMKGDMRLAAF
>LR134384.1|VEH14591.1|671373_674034_+|DNA-mismatch-repair-protein-mutS
MAANDKGLTPMMKQFFSMKAKHPEALLLFRCGDFYETYGEDAAIAAGILGITLTRRNNSVENSVEMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREQIKGKKGLTEMDKMVKRGITELVTPGVAMADTVLNYKENNFLAAVHFGKASCGISFLDISTGEFLTGEGTYDYVEKLLGNFSPKEVLYNRDHKQDFERFFGSKYCVFEMDEWVFSEQNARQKLLKHFGTKSLKGFGVEHLRNGVIASGAILQYLELTQHTQINHITSLSRIEEDKYVRLDRFTIRSLELVAPMQEDGSSLLNVIDRTVTAMGGRMLRRWLVFPLKDVAPINERLDIVDYFFQKPEFRQLIDEQLHRVGDLERIISKVAVGRVSPREIVQLKNALDAVRPIKEACLYSENEALKRIGEQLNLCESIKTRIEKEIQPDPPQLITKGDVIADGYDDELDELREMSRNGKDYLLKIQEKEAEETGISSLKVGFNNVFGYYLEVRNTFKDKVPEGWIRKQTLAQAERYITPELKEYEEKILGAEEKILALEARLFSELVLAMQDFIPQIQINANLLARVDCLLSFAKTSEENGYIRPQIDDSEVLDISQGRHPVIETQLPLGERYVPNDVYLDTQKQQIMMITGPNMAGKSALLRQTALIVLLAQVGCFVPAERAKIGLVDKIFTRVGASDNLSLGESTFMVEMTEASDILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYLHEQPKARARTLFATHYHELNEMEKNFSRIKNYNVSVKEVDGKVIFLRKLMKGGSEHSFGIHVAEIAGMPRSIVKRANAILKELEADNAGVGRAGKPNTSKIAEHRGGMELSFFQLDDPVLAQIRDEILGLDVNNLTPVEALNKLNDIKKILKGK
>LR134384.1|VEH14592.1|674297_675023_-|dihydropteridine-reductase
MSLQEILNHRRAVRHFDPTKPLDTSVVKDCIKQATLAPTSSNMQLWEAYHVTDKKVLEALSHACFDQLTARSAQQMVVFVTRQGQYKQHAKDILAFEKDNIRRNSPVEKQEKRLKKQTLYYEKVIPFIYSRCFGLWGLVRKVLAQCIGLFRPMIRQMSEGDIRVNVHKSCALVAQTFMLAMSEAGYDTCPLEGFDSWRVKKALHLPYDTEINMVVTCGIRLPNGVWGDRYRRPFEEQYHKI
>LR134384.1|VEH14593.1|675668_677504_-|4-hydroxy-3-methylbut-2-en-1-yl-diphosphate-synthase
MNIDLFQYKRRETSTVRIGAIDMGSEYPVRVQSMTTTNTNDTEACVKQAEEIIKAGGELVRLTTQGTREAENLKPINAQLRADGYTTPLVADVHFNPNVADVAALYAEKVRINPGNYVDPARKFIKQEYTDEEYAAELKKIEDRLIPFLNICKANHTAVRIGVNHGSLSDRIRNRYGDTPEGIVESCMEFLRIFKREKFDNVVISIKASNTIIMVRSVRLLVETMDKEGMNYPLHLGVTEAGEGEDGRIKSAVGIGALLADGIGDTIRVSLSEEPAAEIPVARHLVDYINRRQGHLLVPGTQAKAFNWLRSERRFTRAVAGIGGSNAPIVIASSLSGNKQEADYIYAGQEFKERKEGQKYIVDYDQYMTLDDKTNVYPIFPMTAVPFIAMAKADLKFLVLQFGAPTEEYLACLKAHPEIVVVCMSNHQNRLAEQRALVHEMWENGVFNPVVFAQMYRHTAAEKSDFQLEAAADMGALMVDGLTDGLWLMNDGDIPQSIITDTAFGILQAARLRTSKTEYISCPGCGRTLYDLRETIARIREATKDMKGLKIGIMGCIVNGPGEMADADYGYVGAGVNRVSLYRKQVCVEKNIPQEVAVEHLLALIRKDRES
>LR134384.1|VEH14594.1|677505_677598_+|Uncharacterised-protein
MYKKPIQSLPPPPPKGGEGGLADDGQNTDV
>LR134384.1|VEH14595.1|677862_678369_-|N5-carboxyaminoimidazole-ribonucleotide-mutase
MTPIISIIMGSTSDLPVMEKACKWLNDNEIPFEVNALSAHRTPEAVETFARNAKQRGIKVIIAAAGMAAALPGVIAASTPLPVIGVPIKGMLDGLDAMLSIIQMPPGIPVATVGVNAAQNAAILATEMIALSDEAVAAKIDAWKAGLGKKIEKANEDLKEVKYTYKCD
>LR134384.1|VEH14596.1|678415_679033_-|Uncharacterised-protein
MKEKDIILAARIFSMVFTPFYLPIVGLAALFLFSYLGLMPLGYKLTVLGLVYLFTILLPTYIIRLYRHYQGWKPFDFIVRERRMVPYVISIVCYSVCYYLMSIAHIPHFMGSILVAAVLIQVVCALINVWWKVSMHEAAIGGVAGALLAFAFLFTFNPIWWFSLVVFISGIVGTSRMMLRQHTLSQIVVAWLIGFFLAFFTISMV
>LR134384.1|VEH14597.1|679042_680560_-|RNA-polymerase-factor-sigma-54
MAQKLIQTQEQKLAQQMRLSQQQMLQVRLLEMPLTELEENINAELDDNPALEKDDSDMTLAENEGENDFSDSEDNDDFDSMNEKEERQDALDAALENIGSDDVMPQTPYANNHDNADYEETVYGDTTSFYDKLKEQMDMLTLTDKEHAVMEYLIGSLDDDGLLRKDLGSISDELAIYHNIDVSETEIEKVLTMLQGMDPAGIGARSLQECLLLQVKRMRREGGHSPRLLEVMERIFKECFEAFTKKHWDKIKLQLGLSDTQVEMLQREIRKLNPKPGASLGETEGRNMQQITPDFIVDTADDGTVSFSLNHGNIPDLKVSPSFTEMVDAYRNNKEGMSRQAKEALLYAKEKVAKAQGFIEAVKQRRQTLTLTMQAIIAWQKKFFQDGDESDLRPMILKDIADKTGLDISTISRVSNVKYAQTRWGTFPLRFFFTDAYTTGEGEEMSTRKIKIALKTVIEKEDKSKPLSDEALTKLMKEKGFPIARRTIAKYREQLNIPVARLRRG
>LR134384.1|VEH14598.1|680544_681210_-|Uncharacterised-protein
MANQSQWQEAYWLPLLQLYLRKPVGMKPLYSRPMIDLALELNVAPKQLYEQMKMLDKRETASLQQLWKRFATHQKQLRRDIETIRKMRGFNHPQQFYDGVSQEETWQTDFRPLQVDASLTPLHLIIILDLYFRLTPITMVSDTPEVKELATLLSLKPEKVAEIMGIFQLCDPYLNRMAFEVSELFASCHDVWQRFGNLNPNELAREATQMKDFFKTSWHRN
>LR134384.1|VEH14599.1|681243_681405_-|Uncharacterised-protein
MQVYDLQTVRNIANSARFRPEEESHGEYESVLSRSFLLRVIPSFIFIFALFCL
>LR134384.1|VEH14600.1|682506_682914_+|GxxExxY-protein
MNIVEYKELSKKIIGDAFSVYNEYKGGLLESAYQAAFVYLLRKNGFKVEEQKELPLFFRDVRLSKTYRMDIVINNQIILELKAVEEIRKEHRLQLFHYMRLTHIPIGLLINFSYSDGVHFEKYHFDETENRCKAF

Crispr_ID: LR134384_9

• CRISPR_ID: LR134384_9
• CRISPR_location: 790873-790970
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134384_9

Consensus_repeat	Method
TTTCTAATTCTATATTAGTTCGACTCCTCCC	CRISPRCasFinder

spacers of LR134384_9

>9.1|790904|36|LR134384|CRISPRCasFinder
AGATGTCAGCTTTCTTGGAGTATGCTCATAAGCAGG

CRISPR arrays and Neighbor proteins around LR134384_9

CRISPR arrays

The CRISPR arrays of LR134384_9

>merge|LR134384|9|790873-790970|CRISPRCasFinder
TTTCTAATTCTATATTAGTTCGACTCCTCCCAGATGTCAGCTTTCTTGGAGTATGCTCATAAGCAGGTTTCTAATTCTATATTAGTTCGACTCCTCCC

>LR134384|9|9|790873-790970|CRISPRCasFinder
TTTCTAATTCTATATTAGTTCGACTCCTCCC	AGATGTCAGCTTTCTTGGAGTATGCTCATAAGCAGG
TTTCTAATTCTATATTAGTTCGACTCCTCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH14674.1|781622_782975_+|uncharacterized-hydrophobic-domain	unknown	unknown	gnl|CDD|377221
LR134384.1|VEH14690.1|797487_798153_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14680.1|788505_789117_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14681.1|789330_790512_-|Transposase-and-inactivated-derivatives	unknown	unknown	gnl|CDD|307151
LR134384.1|VEH14686.1|792069_793224_-|Protein-of-uncharacterised-function-(DUF2931)	unknown	unknown	gnl|CDD|371398
LR134384.1|VEH14673.1|780007_781336_-|Sodium/proton-antiporter-nhaA	unknown	unknown	gnl|CDD|377746
LR134384.1|VEH14676.1|785712_785946_+|putative-metal-binding-protein	unknown	unknown	gnl|CDD|163565
LR134384.1|VEH14692.1|798835_799360_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|379472
LR134384.1|VEH14693.1|799356_800070_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14685.1|791781_791961_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14687.1|793229_795092_-|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl|CDD|274542
LR134384.1|VEH14678.1|787612_787732_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14689.1|796823_797375_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14679.1|787728_788484_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14677.1|785968_787447_+|Family-of-uncharacterised-function-(DUF438)	unknown	unknown	gnl|CDD|225301
LR134384.1|VEH14684.1|791461_791737_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14691.1|798149_798464_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14688.1|795377_796301_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14682.1|790562_790784_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH14675.1|783441_785538_-|Prolyl-endopeptidase	unknown	unknown	gnl|CDD|224422

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH14692.1|798835_799360_-|Uncharacterised-protein	gnl|CDD|379472	pfam14107, DUF4280, Domain of unknown function (DUF4280). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 129 and 456 amino acids in length. There is a single completely conserved residue C that may be functionally important.	1.58589e-11
LR134384.1|VEH14687.1|793229_795092_-|Uncharacterized-protein-conserved-in-bacteria	gnl|CDD|274542	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.	3.88114e-33
LR134384.1|VEH14686.1|792069_793224_-|Protein-of-uncharacterised-function-(DUF2931)	gnl|CDD|371398	pfam11153, DUF2931, Protein of unknown function (DUF2931). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.	7.82807e-15
LR134384.1|VEH14681.1|789330_790512_-|Transposase-and-inactivated-derivatives	gnl|CDD|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	9.5324e-66
LR134384.1|VEH14673.1|780007_781336_-|Sodium/proton-antiporter-nhaA	gnl|CDD|377746	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyze the exchange of H+ for Na+ in a manner that is highly dependent on the pH.	7.9241e-177
LR134384.1|VEH14677.1|785968_787447_+|Family-of-uncharacterised-function-(DUF438)	gnl|CDD|225301	COG2461, COG2461, Uncharacterized conserved protein [Function unknown].	2.51899e-77
LR134384.1|VEH14674.1|781622_782975_+|uncharacterized-hydrophobic-domain	gnl|CDD|377221	pfam04087, DUF389, Domain of unknown function (DUF389). Family of hypothetical bacterial proteins with an undetermined function.	1.46682e-60
LR134384.1|VEH14676.1|785712_785946_+|putative-metal-binding-protein	gnl|CDD|163565	TIGR03853, hypothetical_protein, probable metal-binding protein. This model describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.	1.43017e-27
LR134384.1|VEH14675.1|783441_785538_-|Prolyl-endopeptidase	gnl|CDD|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0

Protein sequences

>LR134384.1|VEH14682.1|790562_790784_-|Uncharacterised-protein
MNPNNSIQYLMEVHLSAYKANDSPQDSSFSTEYNLLPVRELSCSDKMQENLTLYKRAIDDIFMNLEVVSYKSV
>LR134384.1|VEH14681.1|789330_790512_-|Transposase-and-inactivated-derivatives
MKLTHSQISEILSNYTSSSEGFVTLLSLIMNSLMFHERELFVSANGNEQCNGFRSRRWYSHGFEFSLRVPRSRSGNFYPVLLGLIRNESEERARLFNLLYTKGLTTQQISEFSDSIYGRTYSRQQVSYLSRCCCEDVEQWLGRALSPHYLAVYIDATFISTRRDGQVSKEAYYTMLGVLEDGSREVLTVVNHPTEGAVCWKEELEALKERGVEGIDLVVSDALQGIENAVCAAFPQAAHQFCVAHVKRQILGSVSHKDKPEVVRELGEVFSLENKEMKSLQGYGHFITFVTKWEKKYPTLRRYKAERNAAYFTYMDFPIEVQRCIYTTNWIERLNRKYKRTVSMRTSMPSDKSVIFLLAAVAVEETKKTYARRIYQFKNWKQKIENEWKERIE
>LR134384.1|VEH14680.1|788505_789117_-|Uncharacterised-protein
MKLRINSPFIIANLVLVPLYFSFTTYFFFRGNSDAYDYVDTYLKQSKVIKLTIPKLYEEKRERYKFRDGRKGARDYRQFIFYSPQYRKHIAIVSFSDIDLDSKIKYDLDEERRSHIYNYQATIIAYANTIQWNDAKYGTKDLPMPIFVIKSTHLYNNTKEIEYLSFHNAEKVSPEATRQYVEQYLAHFLSEEEFDRLFKGKKK
>LR134384.1|VEH14679.1|787728_788484_-|Uncharacterised-protein
MVFWKIIYMKRKKIYILYSLFFLFLPISIYAQNKIEEHYTLKSGYELSVTNQRGDSLLYFFLKNGNSKKNIITENQIYMNDTVLWKKYNSRYEGIDFTDYFCITYFIANSMLGIELYEKKTGTDFFHGKCLILCGENMQNRIAYRIKEELLLCLQINNNQDDGTILLIDLKNSHIHKINIHQLVNNMQDTYFWHSVYIKNVNSQYVIITYNNGFSKPISLKLKRIKSPQNKLILDCKNYNGELKENRVNKK
>LR134384.1|VEH14678.1|787612_787732_-|Uncharacterised-protein
MNEFLFMKILKMVMLLLKIASVSEVVDLYKLQGKINMIL
>LR134384.1|VEH14677.1|785968_787447_+|Family-of-uncharacterised-function-(DUF438)
MGKKIDLSRTVYDLTTQYPELIEVLSGLGLTDITKKFLRNSVGKLITIPKGAGMHGIEMKAVIDALEQQGFEVVGAGKPVMSAETLRPVAENTRTEQLKGYLRRLGKGESLEAVRKDFANEFGDVEASEIMQAEQELLAEGTPLHEVQQLCDIHSALFHGATREERMANAEQEVATSVSRHDEIHAMAQANTQRAVDLSHIDGHPIQTFLRENAALEVLLKQAFDVLETRGDITELLLRIRELSIHYAKKGDLLYPHLKVRYDISGPSQVMWTIDDEIRNELGILTRKGEHDELWWGRVGAVLNRAKEMIYKENNILLPLCAANFTETEWQQIYRDSKDYAVCLGVEHRIWSQAESKETVRTQHEGEIVMPGGHLTLGQLTAMLNTLPLEITFVDADNFNRYFNEGSKIFKRPLMAIDREVFSCHPPKIEPMVRSIIEDLRSGKRSQVPMWVEKCGHPMFVNYMAVRDDEGNYIGTVEVVQDMEFAKKHFQR
>LR134384.1|VEH14676.1|785712_785946_+|putative-metal-binding-protein
MTHGHEILHMMEGKSFASKQALVDAIIERFGAAERFCTCSVEGLDAAEIVDFLDDRGKFMETPDGGFTVNLGMMCNH
>LR134384.1|VEH14675.1|783441_785538_-|Prolyl-endopeptidase
MNIRLLLTSTLTMTASCMIAQSFHYPKAPQDNTVDTYFGTQIADPYRPLEDDNSAETERWVTAENALTRHYLDQLPQRPKLMKRLKEVANYEKVSTPFKRHGTWYVYKNNGLQNQSVLYKMDKLGGTLHEVLDPNKLSSDGTVALKSVSFSHNGRYMAYIVSRNGSDWQEIYVKDLETGQDLTDHIEWAKFSNAAWRGDGFYYSAYDAPTGHAFTSKNEVHKIYYHKLGTPQSEDELFYQNPAFPLRFYDVIVNKEETVMYLTESGEGSGNNLYVRDLRRPDAQFVQMTNDMNLQYSPVQTVGDSIYIFTNSGAQKNRLMLANLAKPGIKDWKVLVPEAEYVLDDVTFTHGKMVLNYSKDASSHCYLYTLEGRNIGEIKLPSVGSVSFSGERNEPECFFSFSSFTVPGTVYQFDTDSRTSRVYSQPKVNFKPNDFVTKQVFYASKDGTRVPMFLTYRKDLKLNGKNPVYLYGYGGFNVALPPYFSSMRIPFMEQGGIYVQVNLRGGSEYGEAWHKAGTKMQKQNVFDDFIAAAEWLIANKYTDKKHLAIVGGSNGGLLVGACLTQRPDLFQVCIPQVGVLDMLRYHKFTIGWNWAPDYGTSADSKEMFNYLRGYSPLHNLKKGVSYPATLITTADHDDRVVPAHSFKFAATMQECQGGKAPVLIRIDSKAGHGGGKPLSKQIEEQADIYSFILANMGK
>LR134384.1|VEH14674.1|781622_782975_+|uncharacterized-hydrophobic-domain
MESNEKSLWQVIKGYFNALPDKENEEETIQQISSGVAFHGSNLWVLVFAVFIASLGLNVNSTAVIIGAMLISPLMGPIIGMGLGVGINDLVLLKRSIKNYLVATGISVLTATLYFLITPLNEAQSELLARTSPTLYDVLIALCGGAAGILALSTKGKGNVIPGVAIATALMPPLCTAGYGLAMGESSFFFGAFYLFFINTVFIALATFIGVRMLRFKQRRFIDDARLRKMKQYIIGIVVLTMLPAAYMTLQIIRQSVIENNARRFVRTELSFKGTRIISQNYDTKGKVLNVVAVGKTISKKAICEAEKMLEAYNLADYKLHVIQGSQSDSLLMANQMLGTGTTSEQVSKQKLIEQSAQINDLEQKLEKFTRYTELTKDVREELKSMYPTAKLVAIAQIPETKTDTVVTKSHVMAVVSCLRPLNNPDRERLQSWLKLRTKSDSLKLIVTQN
>LR134384.1|VEH14673.1|780007_781336_-|Sodium/proton-antiporter-nhaA
MRKRYQKQIEHRLLLPILQFTQREKSSGIVLAVFVVLALLLANSPLRSDYLHFLEHHFGFIVDGKSVLNFSVAHWINDGLMSMFFFVVGLELKREFIGGELRDLRKVTLPVAAAVFGMLVPALIYLLFNLGTPFSHGWGIPMATDIAFALAVLYMVGDRIPVSAKVFLTTLAIVDDLGSVVVIALFYTSNISFSSLALGILFLGIMFAGNRLGIKNVWFYGLIGIGGVWLSFLTSGIHATISAVLAAMVIPADSRISEATFIARIHKLTRQFEQAEPNDVRTLEPEQLDILTRVKADSMQATPPLQRLEHALHPFVSFVVMPIFALSNAGVSFVDMDFSTLSANHVALGVMAGLLLGKPIGIAFAVWLMEKLGLGRRSHSMTWRIIIGLGFLASIGFTMSMFVTMLAFNSSESVIQSKVGIFAASIIGGIAGYMLLKKRPKS
>LR134384.1|VEH14684.1|791461_791737_-|Uncharacterised-protein
MSVSELKRKIQYVFTVYQDGSMIEADIYCLTLYDKNTPYNVYIPKALWDDEEFVKQRGHKWGEYILVYPFLDEKWHSNIDCNDIYSPGDLW
>LR134384.1|VEH14685.1|791781_791961_-|Uncharacterised-protein
MVFIKKRHYYISSGIGPICVDDEVREGVKIIGKFKLKNPHPKPIDDKEILFTKKSYQFG
>LR134384.1|VEH14686.1|792069_793224_-|Protein-of-uncharacterised-function-(DUF2931)
MRKTFSLLSIIVICIIAFSCKANLKENKNMNTKFKWDFTIAAPRHYPVEAKYATITFGEEGSFDAMDLTPQVGIGYPTGSNFNPDNYKEDIDLPTGLHILWASFADRKYYKADIEFSDELRKKMLLIFREGYHDTFENKHQNYCNVVATLLPGGHIWLYVNDDLIRSILVCDTLKGKEVKLKPERTEFAEDPTNPFENLEKASALAMKDNFHSDEILKKYGCSDTIWENYKRRYNYHIKMDFENKETKFIPVSYTIHYANGEIQNVADKGYFPRPAIPMNLEFQWTVNDMLYEGHFYFDEAEIIHAYKKIYGSFADQEGTLVIKVSKYNNWFDIYLVVGDKKYRIVDTKIHVFRKEVHESDDKAVVIYDNHPQDGNNPIIFMGE
>LR134384.1|VEH14687.1|793229_795092_-|Uncharacterized-protein-conserved-in-bacteria
MSILNHKISVGIDGKKLFSFKSLKLHQSINNHHRFELFLDLEAGGNRYAHNLKDSAKWIGKSFAVYAGENSETTFMGVITGVSLHRKNSDFGHILVSGYSETYRLETDLNFNSWTGCTLADIIKEMTSKAGVSARINPEYTEKLDYVCQYNESDFTFIKRLALQYNEWLYYDGIDLVFGRPVHLPDAVKLEFGTSLSSLDIGVKALAKPAKVFSYHSLNDQTIAAETPNKPTDKDQLGYEAFQASLEMYRNPARQYALPRIHYTSEMTRYVRKKQEAATAESHYVLGQSETATLVTGSVVDLKSSFLERAGSLTSESLGEFFITEITHTVGEDSYYSNTFKAIPAVVDTLPEPEVEMPIAEPQMARVTRNDDKFGHGRVQVQMNWQAEKMSTDWLRVMAPDGGSSDQVKSNRGFVFIPEVGDHVLVGFRHGDPNRPYVMGSLFNGTTGAGGFAENHLKSLTTRSGSTITFDDTAHTILLQTTHANSIFVDEKNGTIAISSAEEVNVNTKNVNINASENMNVNVGKDFNMQVGEEASVNVGKNSSVSIQGNYSKNIEKDSQISVNGNQNTEIHGNLVTDVTKSMEVSTMDNVTLGSRGITVIKAQDHLYIKSNTKVDIAKE
>LR134384.1|VEH14688.1|795377_796301_-|Uncharacterised-protein
MVWNHRIALILLECMMLSCSYGCMRNQPKSQIYGKNIATKKVTDNMKNIGNERKLLLAESGFDFPSAQEFESKIKQVFGYDIKENTNDIIEVELNPLIEDEPDNLIIYRKDRFVDLNIHSNVYDDKLYLLAFNNYLFYGKKSDFAYMQKDLYHIYELVQDFGYWDDHLKTFIFKKMKADEDNHAWFSIFFGRIGINGKWKLRRNIFRQYCREAENCQTMFMPFLEEILNEPYKTKYEGNLDEDVAYILELISKKELEKEQTPGVIGIISDTYSKHSELLNRFKKKNYYGYENLKFYSQYYEDEIQEN
>LR134384.1|VEH14689.1|796823_797375_-|Uncharacterised-protein
MIILSVLLCLIVSCGQSHAFQTETISASKANSDSLLLGDKCISNKDFAHQVNTTCVAGKEACILEQLTIDYYKLLSHKPKFNLKLDKLHTISLKTYKEKSGVEEHIRTFAILYAGKQISDSLLCYEYYNNANTLSCYEQIYYIDVEQRCLWTIMLTYDEESAKADNVKVYRIDLKRNRFHKNE
>LR134384.1|VEH14690.1|797487_798153_-|Uncharacterised-protein
MKFLLSFIVITFICMSACCQTINSPTKAGDTDTCLVDFTKHAFPQKWENNTIDSIYWITFLSNDRYFESLSTMPQQTLGVLPRKKSTATDYLVDSAYYCKTMYSTKKYTLNIYKSGSKYQSKKGDEMFAPVNYIAFATLDAKQRVIDYLICYYFVYRLYESSERYFYIDNNKNITLINFYTDELETTFWGKCTYHISEQGRFILKPKTGELKNNRLKRYIL
>LR134384.1|VEH14691.1|798149_798464_-|Uncharacterised-protein
MAGFIGALAEFGKPMKCTGMCFADATSYPSLSHPNGDSADTEYCSSFKDEQRKVNAFIHFHFTKIFRGKESWFPKLAGTKFASGHETHLHAGDFDISKVTVKKL
>LR134384.1|VEH14692.1|798835_799360_-|Uncharacterised-protein
MKDEYIVNRAICQCKFGSTPGFLKVTDNQAICMNGKLAATDKTLGNVFEGAGFTMCKKSWPPKPCVPAFVSWAGAYDGVSINGSSPLLGTSKGTCVMGCTDCISFQTSGQIPIPSERQVMKSAMALRNDINPLAVDEPSIVTYHIYWDGRIEKHIPKAIQKGYEDKYKYVYHKK
>LR134384.1|VEH14693.1|799356_800070_-|Uncharacterised-protein
MVIQKGYYYFFSEMVFPNGHKSSYEKNINVEYKHPFDITITNIGNDSINGKPPGDFDFVMSWLGKALYPQTIRLDHLGLLKEVVNANGMRERYVKEGQRIMDYYEQTPLIVQYVERCIERLGDEKKLLRLISLSNIYQLVTIGLDITRYEYRLVDFPFVGDIISFHLAIVKEEEEEMLLTIPEIKTDRKILSHKGKAYVHKIEKGMFNHIQLMLEVEIEDKGFYTRRLELKRMEGTE

Crispr_ID: LR134384_10

• CRISPR_ID: LR134384_10
• CRISPR_location: 1541808-1541901
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134384_10

Consensus_repeat	Method
TGTCCTCCTCCGTCAAAGTTCATGTTTACC	CRISPRCasFinder

spacers of LR134384_10

>10.1|1541838|34|LR134384|CRISPRCasFinder
AAAACAGGCAAGAGCTTCGAGGCTTCTCTCTCCT

CRISPR arrays and Neighbor proteins around LR134384_10

CRISPR arrays

The CRISPR arrays of LR134384_10

>merge|LR134384|10|1541808-1541901|CRISPRCasFinder
TGTCCTCCTCCGTCAAAGTTCATGTTTACCAAAACAGGCAAGAGCTTCGAGGCTTCTCTCTCCTTGTCCTCCTCCGTCAAAGTTCATGTTTACC

>LR134384|10|10|1541808-1541901|CRISPRCasFinder
TGTCCTCCTCCGTCAAAGTTCATGTTTACC	AAAACAGGCAAGAGCTTCGAGGCTTCTCTCTCCT
TGTCCTCCTCCGTCAAAGTTCATGTTTACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH15323.1|1549183_1549426_+|Lipid-binding-protein	unknown	unknown	gnl|CDD|349414
LR134384.1|VEH15321.1|1547633_1548053_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15308.1|1537696_1538095_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15307.1|1537355_1537532_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|317918
LR134384.1|VEH15318.1|1544693_1545671_+|6-phosphofructokinase-isozyme-1	unknown	unknown	gnl|CDD|235111
LR134384.1|VEH15322.1|1548100_1549117_+|F-ATPase-subunit-6	unknown	unknown	gnl|CDD|237381
LR134384.1|VEH15312.1|1540335_1540569_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15304.1|1534569_1536177_+|Protein-of-uncharacterised-function-(DUF1557)	unknown	unknown	gnl|CDD|369438
LR134384.1|VEH15325.1|1549976_1550513_+|F-type-ATPase-subunit-delta	unknown	unknown	gnl|CDD|237386
LR134384.1|VEH15306.1|1537116_1537305_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|317918
LR134384.1|VEH15313.1|1540587_1541238_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15310.1|1539475_1539763_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15320.1|1547382_1547625_+|F-ATPase-epsilon-subunit	unknown	unknown	gnl|CDD|376940
LR134384.1|VEH15316.1|1543451_1543850_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|375224
LR134384.1|VEH15317.1|1544400_1544505_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15311.1|1540033_1540327_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15324.1|1549445_1549964_+|F-type-ATPase-subunit-b	unknown	unknown	gnl|CDD|184695
LR134384.1|VEH15309.1|1538156_1539089_+|Transposase-and-inactivated-derivatives	unknown	unknown	gnl|CDD|307151
LR134384.1|VEH15305.1|1536193_1536922_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15319.1|1545801_1547328_+|ATP-synthase-subunit-beta,-sodium-ion-specific	unknown	unknown	gnl|CDD|236447

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH15323.1|1549183_1549426_+|Lipid-binding-protein	gnl|CDD|349414	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c. Subunit c (also called subunit 9, or proteolipid) of the Fo complex of F-ATP synthase. The F-ATP synthase (also called FoF1-ATPase) consists of two structural domains: the F1 (factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons though the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Methanosarcina acetivorans.	6.15156e-12
LR134384.1|VEH15325.1|1549976_1550513_+|F-type-ATPase-subunit-delta	gnl|CDD|237386	PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional.	4.52186e-59
LR134384.1|VEH15307.1|1537355_1537532_+|Uncharacterised-protein	gnl|CDD|317918	pfam15601, Imm70, Immunity protein 70. A predicted immunity protein with an alpha+beta fold and conserved tyrosine and tryptophan residues. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, which usually contains toxin domains of the Tox-REase-10 family.	2.3788e-12
LR134384.1|VEH15318.1|1544693_1545671_+|6-phosphofructokinase-isozyme-1	gnl|CDD|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	1.2915e-173
LR134384.1|VEH15322.1|1548100_1549117_+|F-ATPase-subunit-6	gnl|CDD|237381	PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional.	1.74522e-58
LR134384.1|VEH15304.1|1534569_1536177_+|Protein-of-uncharacterised-function-(DUF1557)	gnl|CDD|369438	pfam07591, PT-HINT, Pretoxin HINT domain. A member of the HINT superfamily of proteases that is usually found N-terminal to the toxin module in polymorphic toxin systems. The domain is predicted to function in releasing the toxin domain by autoproteolysis.	8.87908e-24
LR134384.1|VEH15306.1|1537116_1537305_+|Uncharacterised-protein	gnl|CDD|317918	pfam15601, Imm70, Immunity protein 70. A predicted immunity protein with an alpha+beta fold and conserved tyrosine and tryptophan residues. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, which usually contains toxin domains of the Tox-REase-10 family.	2.04971e-16
LR134384.1|VEH15320.1|1547382_1547625_+|F-ATPase-epsilon-subunit	gnl|CDD|376940	pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsilon chain, beta-sandwich domain. Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).	9.58087e-23
LR134384.1|VEH15316.1|1543451_1543850_-|Uncharacterised-protein	gnl|CDD|375224	pfam17642, TssD, Hemolysin coregulated protein Hcp (TssD). T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. These tube and trans-envelope sub-assemblies are linked via TssK. This entry comprises family members such as the inner tube protein Hcp (TssD). Hcp proteins form hexamers that stack to form the inner tube/needle structure of the puncturing device. Other functions have also been described for Hcp proteins, for example, some Hcp proteins have been shown to have a chaperone function in that they bind to and stabilize effectors. In addition, there are evolved Hcp proteins that have the Hcp domain at the N-terminal half of the protein and a toxic effector function present in the C-terminal portion of the protein.	2.14812e-59
LR134384.1|VEH15319.1|1545801_1547328_+|ATP-synthase-subunit-beta,-sodium-ion-specific	gnl|CDD|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
LR134384.1|VEH15309.1|1538156_1539089_+|Transposase-and-inactivated-derivatives	gnl|CDD|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	4.84144e-77
LR134384.1|VEH15324.1|1549445_1549964_+|F-type-ATPase-subunit-b	gnl|CDD|184695	PRK14471, PRK14471, F0F1 ATP synthase subunit B; Provisional.	1.46133e-35

Protein sequences

>LR134384.1|VEH15313.1|1540587_1541238_-|Uncharacterised-protein
MFPEQFSEAAKMMGDLEAVKSDVVRILNHEEVLSRWEDYKQGMREKYEFLQDKQIRDNMEGFLNIVGKQIANESALLAELQLKLPFLLLFDKHLVSSDISASTEQQEFSSPLFDHITFPLELRQEIVKETPTEILFTRHNVATEIPKDVLKRIEEIYNQKYKPTVGYSFSTYNVDYGIRFQTDREGVFLREAQGSITEEVVNNTRLAISFTLRKIQ
>LR134384.1|VEH15312.1|1540335_1540569_-|Uncharacterised-protein
MKQSFIRQGTCVVCTNMTCGKPQKVGGIRAERYVMNTKAKETHNIDAASKRVIAENDSDQNDEDLNKNFMGIVANQT
>LR134384.1|VEH15311.1|1540033_1540327_-|Uncharacterised-protein
MKLRINSPFIIANLVLVPLYFSFTTYFFFRGNSDAYDYVDTYLKQSKVIKLTIPKLYEEKRERYKFRDGRKGVRDYRQFIFYIYNYQATIIAYANTI
>LR134384.1|VEH15310.1|1539475_1539763_-|Uncharacterised-protein
MIKLKINSSFVIANLVVMPLISIFITYFFLRGNNDVYDYIDTYLKQSKVIKLTIPEKYEEKKSIINSVIQKGHITAEIIGNLYSIPPNIVNTSLS
>LR134384.1|VEH15309.1|1538156_1539089_+|Transposase-and-inactivated-derivatives
MDNKEFDYKRAAEQLCKGEPLFSKDGALAPMLERILNAALEGEMDAHLTSEERSQGNRRNGKMPKQVQTCYGAVIVETPRDRDGSFEPQTVKKCETILAEGMADQIINMYAFGTSTRDISKCFEREFGTRLSAETISSITDRVLPEIKAWRSRMLDPVYAICWLDTIHYKVKDETGRAVSRAIYNVLGINKEGHKELLGMYISKSEGANFWLEVLSDLQNRGVQDILICCIDGLKGFPDAIQSVFPNTSVQLCIVHQIRNSIKYVGSKHQKEFLWDLKTVYGAVSKETAETQLDTLEGKWGETYSIVIKS
>LR134384.1|VEH15308.1|1537696_1538095_+|Uncharacterised-protein
MEELKLLYQNWNYAYYELESEEDTLFNFECEYKNRISKRVPKEIQSYTMEQWARFAYERNRSMAEMAWNKGIAPNEYNSLLDKIGFPFEVTALLEFNEQPYAFIIFLGEGCNVSFLDELGRTYMSYRFEPSP
>LR134384.1|VEH15307.1|1537355_1537532_+|Uncharacterised-protein
MGYRRFVTATSLGNDISEDITDLSNYFVTSEGEDLFDVLFKAFGRAKDDHENVEIKQL
>LR134384.1|VEH15306.1|1537116_1537305_+|Uncharacterised-protein
MAVGIFVEPDFYTIGTGNFLFCFFSNIAYHLENGQWGNRFPYLMKHLYDGLLEKTICKECNR
>LR134384.1|VEH15305.1|1536193_1536922_+|Uncharacterised-protein
MEELKLLYQNWNYSYYELQSEEDTLFNFESEFKYRISKRIPKEMQSYTMEQWARFAYERNRSMAEIAWNKGIDPNEYNSLLMKIGFPFGITALLEANEQPYAFMIFLGEGGTVSFLDELGRIYMSYRFEPSPYQNEKGNRKGYLFLYQLSLRYYHEEKDEDGDWDYDYTDYGFTPDGRVRKIEEIGDERTIYDSEQRVNVESNWQKYPEFGDWLPLFEMKRWKDDELMPLTDKDNSNKFPWE
>LR134384.1|VEH15304.1|1534569_1536177_+|Protein-of-uncharacterised-function-(DUF1557)
MADQLEYVVRNALMVCDKGAAPAFFLPTHNTHIKIQGCLVANKLDKQPLVNIPTFGICSLTQKPCVPACTEWQKTYKLRVKGQETLLFRSEMPCSLGGKINFVTSGQIPLPDDAIEDIKALQEQGAKEDEDEGWGWLDTVELIPVVGSIVGAVREGMKGNWGMMAMNIGFLALDVAGLVSFGATTAASSAGKAGIKAGVKVAAKSAAKAVAKQVGKTGLKTAVKLTVKGARKAFCKSIDKIVGKASAGHVCVFACFPAGTKINTAVGLKNIEDIKAGDRVWSYDELTGETGLQEIVRTMVRESDHTVELYTEKEIIETTAEHPFLTGNGWKDAADLQTGDRIKGRNKEDIEIKDVKFSYKPRTVYNFEVSNWHTYFVGALQWLVHNACLKELARMGIEYAQRILRGIKFNKVMAEKLGKKEFSHEVWLKGMKRRVDTVMKDGKKVISRKATQLHKVTKETAEKYIDEVAGYKGQGVQNPDRMDKGISKIGDDAKTILSIPKQEKPIPKNIKQYAKKKGVDIKEERDITMDNLKNW
>LR134384.1|VEH15316.1|1543451_1543850_-|Uncharacterised-protein
MGSFRATLELGGKEYDVLYSNYEFSRNTDSKGKPSSSISGGRVSVTVESTEDTTAIEAMLNSQFKAVDGKIIYKKTEEDAKMKEIEFKNAYIVHYKETLDATNEVPMTIAMTFSAETITVGNAELDNRWPKV
>LR134384.1|VEH15317.1|1544400_1544505_+|Uncharacterised-protein
MMVFNLLFVYCHYTATSGALYEFKAKVKLGMSVC
>LR134384.1|VEH15318.1|1544693_1545671_+|6-phosphofructokinase-isozyme-1
MAKIKTIGILTSGGDAPGMNAAIRAVTRAGIYNGFNIKAIYRGYDGLINDEIVDFTTENVSGIINQGGTMLKTARSEEFKTAEGQQKAYDNIVKENIDALVVIGGNGSLTGAMKFAQEHDLCCIGLPGTIDNDLYGTDSTIGYDTTMNTIVECVDRIRDTAQSHERIFFVEVMGRDAGFLAQNSAIASGAEAAIIPEDSTDVDQLAQFMERGIRKSKRSCIVIVSESPKCGAIYYANRVKKEFPQYDVRISILGHLQRGGRPTARDRILASCTGVGAIEAIMQGQRNIMVGVRNNEVVYVPLSEAIRSDKPFDRKLIKVLDELSI
>LR134384.1|VEH15319.1|1545801_1547328_+|ATP-synthase-subunit-beta,-sodium-ion-specific
MSQIIGHISQIIGPVIDVYFDTKGQDAEKVLPKIYEALKVKRADGSDLVIEVQQHIGEDTVRCVAMDNTDGLQRGLDVVSTGSPITMPAGEQIKGRMMNVIGKPIDGMEELDMQGAYPIHRAAPTFDQLSTHKEMLATGIKVIDLLEPYMKGGKIGLFGGAGVGKTVLIMELINNIAKGHNGYSVFAGVGERTREGNDLLRDMLESGVIKYGEAFRKAMEEGKWDLSLVDKKELAESQATLVYGQMNEPPGARASVALSGLTVAEEFRDHGGKNGEAADIMFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLASEMGAMQERITSTKNGSITSVQAVYVPADDLTDPAPATTFSHLDATTELSRKIAELGIYPAVDPLGSTSRILDPLIVGKAHYDCAQRVKQLLQRYNELQDIIAILGMDELSDEDKLTVNRARRVQRFLSQPFTVAEQFTGLKGVMVPIEETIKGFNAILDGEVDDLPEQAFINVGTIEDAKEKAKKLLEAANV
>LR134384.1|VEH15320.1|1547382_1547625_+|F-ATPase-epsilon-subunit
MSHLRVVSPERVVFDGEVMCVTVPGAIGEFEILEHHAPIISSLEKGHIVYQPLDSQKETLDILGGFVEVQKDEIRICVEL
>LR134384.1|VEH15321.1|1547633_1548053_+|Uncharacterised-protein
MTLETNRQLASKRYIRQAVQIVFALFLLELLAFQLVGSDLLLTPILVSVGFALFVELGDALSWKRLESKGDETKATFFMAVSGFRFLLALLVLFIYYLNTDRGGMFTFLLLFAPFYLAVLAHHSVFFSHLRNNKSKNLR
>LR134384.1|VEH15322.1|1548100_1549117_+|F-ATPase-subunit-6
MVIAMMPLQLFAAHGAEGGKLNISEIVLGHLSDDYEWHIASYDGKALSIPLPVIVRSSATGQWTFCTPETLPSNFFFDEAHHGKIYEKMPDGSNVRPLDLSITKAVAQIWIVVIVLLGIFGYCSRWYKHRDAKSEAPRGFVGAMEMIVMTINDDVVKSSIGEKHYKTYAPYLLTVFFFILTANLIGLVPIFPGGANVTGNINITMFLAVCSMLAINLFGNKEYWKDIFWPHVPFLLKAPIPLMPVIELFGVFTKPFALMIRLFANMMAGHAVILSFTCVIFLGWSMGVGFGLGLNIFSILMLLFMNCLELLVAFVQAYVFTLLSAVFIGMAHKEEEAE
>LR134384.1|VEH15323.1|1549183_1549426_+|Lipid-binding-protein
MMISTLLAATGLAQLGCGLGAGIATIGAGLGIGKIGGSAMDAIARQPEASSKIMTNMILTSAFVEGCALFAIAACAFIIK
>LR134384.1|VEH15324.1|1549445_1549964_+|F-type-ATPase-subunit-b
MENLPSILTPDLGLLFWMLLAFLVVFICLARFGFPVIIKMVDERKQYIDESLNKAHEASERLANIKQEGETLLQEAREQQAKIMKEAATTRDAIIEQAQDKAREESTRIISEAKKQIEVEKQSAIRDIRSQVAELSIQVAEKILREKLSNDKAQMDMIDRLLDEVSEKENKD
>LR134384.1|VEH15325.1|1549976_1550513_+|F-type-ATPase-subunit-delta
MDLGVISVRYARALLKGALAEKQEDKLYKDMQILLQSYIEVPELRITIDNPMLPTNKKQAVLEAACGKDVTSLTKRFIALVLKEDRETALQFMAASYITLYRKHKNITRGKLITASAVSQNTVDKMKQMVEDKTQGSVEFNTKIDNELIGGFILEYDDYRMDASVKSKLRGILSELKK

Crispr_ID: LR134384_11

• CRISPR_ID: LR134384_11
• CRISPR_location: 1846627-1846773
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of LR134384_11

Consensus_repeat	Method
TTCGCTTTCATCCACGGATGACG	CRT

spacers of LR134384_11

>11.1|1846650|19|LR134384|CRT
GGCATTTTTTTGCCTTTTT
>11.2|1846692|18|LR134384|CRT
AATGATTTTCAGCGTTTT
>11.3|1846733|18|LR134384|CRT
GGCATTTTTTGCCTCTTT

CRISPR arrays and Neighbor proteins around LR134384_11

CRISPR arrays

The CRISPR arrays of LR134384_11

>merge|LR134384|11|1846627-1846773|CRT
CTCGCTTTCATCCACGGATGACGGGCATTTTTTTGCCTTTTTTTAGCTTTCATCCATGGATGACGAATGATTTTCAGCGTTTTTTCGCTTTCATCCACGGATAACGGGCATTTTTTGCCTCTTTTTCGTTTTCATCCACGGATGACG

>LR134384|11|1|1846627-1846773|CRT
CTCGCTTTCATCCACGGATGACG	GGCATTTTTTTGCCTTTTT
TTAGCTTTCATCCATGGATGACG	AATGATTTTCAGCGTTTT
TTCGCTTTCATCCACGGATAACG	GGCATTTTTTGCCTCTTT
TTCGTTTTCATCCACGGATGACG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH15594.1|1849655_1850099_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|379484
LR134384.1|VEH15589.1|1845939_1846242_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15595.1|1850100_1850436_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|376482
LR134384.1|VEH15582.1|1838565_1839708_+|hopanoid-biosynthesis-associated-glycosyl-transferase-protein-HpnI	unknown	unknown	gnl|CDD|133035
LR134384.1|VEH15591.1|1847274_1848840_+|Probable-propionyl-CoA-carboxylase-beta-chain-5	unknown	unknown	gnl|CDD|130187
LR134384.1|VEH15580.1|1836044_1837367_+|Lysine-sensitive-aspartokinase-3	unknown	unknown	gnl|CDD|236376
LR134384.1|VEH15586.1|1842625_1843192_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15596.1|1850443_1851304_-|DNA-uptake-lipoprotein	unknown	unknown	gnl|CDD|274513
LR134384.1|VEH15587.1|1843594_1844896_-|Membrane-bound-lytic-murein-transglycosylase-F-precursor	unknown	unknown	gnl|CDD|381606
LR134384.1|VEH15588.1|1845022_1846057_+|Histidinol-phosphate-aminotransferase	unknown	unknown	gnl|CDD|273467
LR134384.1|VEH15585.1|1842516_1842618_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15583.1|1839716_1840496_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15599.1|1854179_1854329_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15593.1|1849033_1849459_+|Biotin-carboxyl-carrier-protein-of-acetyl-CoA-carboxylase	unknown	unknown	gnl|CDD|236449
LR134384.1|VEH15584.1|1840492_1842484_+|Fructose-1,6-bisphosphatase-class-3	unknown	unknown	gnl|CDD|377726
LR134384.1|VEH15581.1|1837375_1838536_+|Diaminopimelate-decarboxylase	unknown	unknown	gnl|CDD|143501
LR134384.1|VEH15592.1|1848877_1849027_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15600.1|1854347_1855145_+|Uncharacterised-protein	unknown	unknown	gnl|CDD|213397
LR134384.1|VEH15597.1|1851743_1851977_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH15598.1|1852168_1854217_+|excinuclease-ABC-subunit-B	unknown	unknown	gnl|CDD|235395

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH15594.1|1849655_1850099_-|Uncharacterised-protein	gnl|CDD|379484	pfam14126, DUF4293, Domain of unknown function (DUF4293). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 136 and 154 amino acids in length.	2.11026e-38
LR134384.1|VEH15582.1|1838565_1839708_+|hopanoid-biosynthesis-associated-glycosyl-transferase-protein-HpnI	gnl|CDD|133035	cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	5.46827e-11
LR134384.1|VEH15595.1|1850100_1850436_-|Uncharacterised-protein	gnl|CDD|376482	pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and III. This family also contains the bacterial equivalent to Rpb6, the omega subunit. Rpb6 and omega are structurally conserved and both function in polymerase assembly.	0.000381511
LR134384.1|VEH15580.1|1836044_1837367_+|Lysine-sensitive-aspartokinase-3	gnl|CDD|236376	PRK09084, PRK09084, aspartate kinase III; Validated.	2.67332e-123
LR134384.1|VEH15596.1|1850443_1851304_-|DNA-uptake-lipoprotein	gnl|CDD|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	1.18788e-26
LR134384.1|VEH15587.1|1843594_1844896_-|Membrane-bound-lytic-murein-transglycosylase-F-precursor	gnl|CDD|381606	cd13403, MLTF-like, membrane-bound lytic murein transglycosylase F (MLTF) and similar proteins. This subfamily includes membrane-bound lytic murein transglycosylase F (MltF, murein lyase F) that degrades murein glycan strands. It is responsible for catalyzing the release of 1,6-anhydromuropeptides from peptidoglycan. Lytic transglycosylase catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do goose-type lysozymes. However, in addition, it also makes a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	2.26292e-79
LR134384.1|VEH15588.1|1845022_1846057_+|Histidinol-phosphate-aminotransferase	gnl|CDD|273467	TIGR01141, Histidinol-phosphate_aminotransferase, histidinol-phosphate aminotransferase. Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. [Amino acid biosynthesis, Histidine family].	9.81948e-102
LR134384.1|VEH15591.1|1847274_1848840_+|Probable-propionyl-CoA-carboxylase-beta-chain-5	gnl|CDD|130187	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds].	0
LR134384.1|VEH15598.1|1852168_1854217_+|excinuclease-ABC-subunit-B	gnl|CDD|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
LR134384.1|VEH15593.1|1849033_1849459_+|Biotin-carboxyl-carrier-protein-of-acetyl-CoA-carboxylase	gnl|CDD|236449	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.	7.66835e-28
LR134384.1|VEH15584.1|1840492_1842484_+|Fructose-1,6-bisphosphatase-class-3	gnl|CDD|377726	pfam06874, FBPase_2, Firmicute fructose-1,6-bisphosphatase. This family consists of several bacterial fructose-1,6-bisphosphatase proteins (EC:3.1.3.11) which seem to be specific to phylum Firmicutes. Fructose-1,6-bisphosphatase (FBPase) is a well known enzyme involved in gluconeogenesis. This family does not seem to be structurally related to pfam00316.	0
LR134384.1|VEH15581.1|1837375_1838536_+|Diaminopimelate-decarboxylase	gnl|CDD|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	1.51455e-169
LR134384.1|VEH15600.1|1854347_1855145_+|Uncharacterised-protein	gnl|CDD|213397	cd12190, Bacova_04320_like, Uncharacterized proteins similar to Bacteroides ovatus 4320. This model characterized a family of proteins conserved in Bacteroidetes, similar to B. ovatus ATCC 8483 reading frame 04320. Structurally, the protein resembles members of the SRPBCC domain superfamily (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC).	6.02537e-58

Protein sequences

>LR134384.1|VEH15589.1|1845939_1846242_-|Uncharacterised-protein
MALTPYEKHKNTPKMAFSPYGKHKNSLKTALTPYEKHKNSLKTSFSPYGKAERLMLKQTSRVYSFLNAASNAWFSVFVPIVMRRQFSQCSMCAQLCTAIP
>LR134384.1|VEH15588.1|1845022_1846057_+|Histidinol-phosphate-aminotransferase
MKEIKALCRQNIWNLPSYTAIESEHSEQQDMLLLNANENPYNKPFNRYPTPQQQELKLLISSVKGVPAANIFLSNGSNEAIDMTFRIFCEPGVDNVVAISPTYDMYRRCAELNNIDYHSVLLDEHYQTTADNLLGACNEHTKLICICSPNNPTGNTIDHTVIKQVLYSFQGIVIIDEAYIDFANSPSFVKELAQYPNLIVLNTMSHAWGLAAIRLGMVFADKPIIDLFNKVAMPYNINALTQQQAIEALKDPFETAKRVSLIQQERARMLSAFQALPCCKKVYPTEANFFLAQMIDAQAIYDYLLHQGIAVHNCAHIEHCENCLRITIGTKTENQALLAALRKL
>LR134384.1|VEH15587.1|1843594_1844896_-|Membrane-bound-lytic-murein-transglycosylase-F-precursor
MDISKLCCNFVTIGCHAFCIIKNVSTLMRHLYALCLRGLLMLVLLASCKERKEKIVTPWGEVIGEGDSLPKQGNFTLSDILSNGELIVLTMSGPETYYDYHGRGMGLQYLLAEKFAQKMGVSLRVEVCKDTMEMVRRLQAGDGDLIAFPLPRRYKNVEYCGVKIDSLHAQWAVQLDNTELADSLNHWFRPQMIAALKKEENFLLSTRSVTRHVYSPMLNRSEGIISRWDPYFRQYAPMAGWDWRLMAAQCYQESTFDPQAHSWAGACGLMQIMPRTADHLGLSRTEIYDPERNIAAAAKYIYELSKHFSDVSNPIERSYYVLASYNGGYFHIRDAMALARKYGRNPYSWSDVREFVLRLSTPPYYNDPVVKYGYMRGHETVDYVSRIVDRWAQYRGFAHSTGGGFTGDSFKGFGGSLDNMAPSRAKHRNRFKI
>LR134384.1|VEH15586.1|1842625_1843192_-|Uncharacterised-protein
MNRTIAFLLGGLLLLVWVGILLGFKEFCLDKIKSGVGKYSLGMMFAYGILLLLYVASEHYLSLKTLLLNWYIGRIPGGIILILVPACYSIFLIGKGYFKEGGEKASFKWKLKMMVSVFFNSFLALFGLMFFSFLQRGGSFSELVALIQEAALSINWSWMLDFVACCGLIVLIVWLDHKKHSSKSKHKG
>LR134384.1|VEH15585.1|1842516_1842618_-|Uncharacterised-protein
MKPFADRIFGKLLQTGDTPNSRINYSATSIKVR
>LR134384.1|VEH15584.1|1840492_1842484_+|Fructose-1,6-bisphosphatase-class-3
MKKYNIEKDMRYLQLLANSFPTIANASTEIINLQAILNLPKGTEHFLADIHGEYEAFQHVLKNASGNIKRKVNELFGNTLREQEKRELCSLIYYPEQKLELVKVTEEDINDWYHITLHQLVAVCRTVSSKYTRSKVRKSLPADFSYIIQELLHEHTENNSNKTAYVNVIVDTIISTGRADDFIIAICNVIQRLAIDQLHILGDIYDRGPGAHIIMDTMAGYHSWDIQWGNHDILWMGACAGNDACICNVIRLSLRYANLTTLEEGYGINLVPLATFAMEVYKDDPCEEFMPRLSGGAKQVDEKTLRLTAQMHKAIAVIQFKEEAQLFEAHPEWKMQDRELFKMINYEKGTILLDGKEYPLTSCNFPTIDPKHPCALTFEEKTLMGKLHHSFRVSEKLHKHIRLMLQHGCMYAIRNDNLLFHASIPLNDDGTLKEVEIEPGRKYKGRELMQQTGMLIRAAFQDDSTLEEKKYAIDYFIYLWCGPNSPLFDKDKMATFERYFIADKSTHKEEKGNYFLLRDNEKIVDYILDAFGVKGANRHIINGHVPVHVANGENPIKASGKLMVIDGGFSQAYHKETGIAGYTLVYHSRGFQLVQHEPFTSAADAVQRGTDIKSTTQIVEMSSHRMLVADTDKGIELKKQIEDLEELLYAYRHGIIGEKESKK
>LR134384.1|VEH15583.1|1839716_1840496_+|Uncharacterised-protein
MRIRFFHPPLEANRQQAAFIEVLQKAWEANQTTLADDQKYDLLHVLGRPSHEVVEKIRCAKKKRIPILYSPLSEIAPWSEKPINHSLAKQLFIHTTGKAEYDYIKKRYSDANVILMKNPAVTVDTTQTLFNSELQQLYQQILKQHDEQVKADIDTSITKLKTPIDDEIMHAVLKGFLYLHYKYGRRQILQQDIDAQSQLMLTADYDEDKLGTILKELKLYRFVSGLETVMEKKSQLTEGFMPIPATNGRLTKHINSATL
>LR134384.1|VEH15582.1|1838565_1839708_+|hopanoid-biosynthesis-associated-glycosyl-transferase-protein-HpnI
MIIDQLTLILGFSIILLAIIALLTSPFLCKIKSQNRENIETELPPISIIIPTHDNFSELQRNLPIFLRQQYAGSYQVIVVADKGDHETENLMKRLMSEYNNLYATYLPDSSRYMSRIKLAITLGVKAAKTDWISITDPTCRPADESWLTSWGQNMTADTDFVMGYVALDNKTPATWRFEHALKANKCLRAGQRGKTWATNCQNIAFRKSHFMKGEGFRGNLQLIRGEYDFLANKYGRNNATRIDIRRSSWLYEEDPSKKTWYNRKIYFRASKPLLKGYMGNRLCTLFENMTLHLSFLASLTCGVFAGIMQNWILLGCAFFSLLLLITGRTILASKAISHLDENIRKGSMFFLEMLLAWRNLRYKFCYIHADKSDFTSHKL
>LR134384.1|VEH15581.1|1837375_1838536_+|Diaminopimelate-decarboxylase
MTKGIFNIEKFQRLSTPFYYYDTELLRRTLTEIKTEANKHSNYIVHYAIKANANTKLLKIIHEAGLGADCVSGGEIKAALEAGFPASEIVYAGVGKSDWEINLGLDNEIFCFNVESIPELEVINELAGTKGKMANVAFRINPDVGAHTHSNITTGLAENKFGIAMRDMESIINRALHMKHVKFIGLHFHIGSQILDMSDFVALCRRINDLQNQLEKHGISVRHINVGGGLGIDYEHPDKSAIPDFKAYFDTYAKYLKLRHGQQLHFELGRAVVGQCGSLITRTLYVKQGDTKQFAIVDAGMTELIRPALYQAVHKIENISSNRPTEIYDVVGPICETSDVFAKDVLLNKTYRGDLLAIRSAGAYGEIMASQYNCRKLPKGYTTEDL
>LR134384.1|VEH15580.1|1836044_1837367_+|Lysine-sensitive-aspartokinase-3
MKVMKFGGTSVGSPKRIKEVSSLITETGEPTFIVLSAMSGTTNSLVEISNYLYKKNPDGANEIINCLENKYMLHVEELYTTEVYKQKTREFLHDEFDYLRSFTKNLFTSFEEKSIVAQGEIMSTNMVVNYLQENGVKAVLLNALDFMRTDKNGEPDLQTIKEKLSEIMKANEGYQIYLTQGFICRNAYGEIDNLLRGGSDYTASLVGAALPAEEIQIWTDIDGMHNNDPRVVEDTEALHQLNFDEAAELAYFGAKILHPTCVLPAKYANIPVRLKNTMDPKAEGTLINNVVVKGKFKAVAAKDNITAVKIKSSRMLLATGFLRKIFEIFESYQTPIDMITTSEVGVSMSIDNNTHLDEIVNELKKYGTVTVDTDMCIICVVGDLDWNNLGFESQALDAMKNIPVRMISYGGSNHNISFLIREADKKQALQSLSAILFANK
>LR134384.1|VEH15591.1|1847274_1848840_+|Probable-propionyl-CoA-carboxylase-beta-chain-5
MSKQVEKIKQLIAKREEARLGGGQKAIDKQHERGKYTARERIEMLVDEGSFEEYDMFKLHRCHNFGMEKKQFLGDGVVAGSATVNGRLVYLYAQDFTVNGGSLSETMAQKICKVMDMAMKMGAPVIGMNDSGGARIQEGISALAGFGEIFERNILASGVIPQISAIMGPCAGGAVYSPALTDFTIMTEGTSYMFLTGPKVVKTVTGEEIDAEHLGGASVHASKSGVTHFTAKTEEECMELIKTLLSYIPSNNTENAPRVECDDPIDRKEDLLNEIIPEDPNQAYDMYKVISAVVDNGEFFEIQPKFAKNIITGFARFNGQSVGIVANQPAAYAGVLDVNASRKGARFVRFCDAFNIPIVSLVDVPGFLPGTGQEYNAVILHGAQLLYAYGEATVPKITINLRKSYGGSHIVMGCKQLRSDLNFAWPSAEIAVMGASGAVAILCGKEAKKIKEEGGDVKAFLAEKEEDYTETFANPYQAAQYGYIDDVIEPRNTRFRICRGLAQLATKRQNIPAKKHACMPM
>LR134384.1|VEH15592.1|1848877_1849027_+|Uncharacterised-protein
MDKNIYAAIAMALYEFEGNNVHDYEPGKITIEPHHTLWNAKFLSLTKKP
>LR134384.1|VEH15593.1|1849033_1849459_+|Biotin-carboxyl-carrier-protein-of-acetyl-CoA-carboxylase
MKEFKYTIDGKEYNVTIGEIDENNVAHVTVNGDDFKVQMEKEAEPEKKKVVLGKPAQTEESEAAPAANVNTNNAVKAPLPGTITAINVEVGQEVKAGDAVVVLEAMKMANNIEAEKDGKITAICVKIGQTVLEEDPLIVIE
>LR134384.1|VEH15594.1|1849655_1850099_-|Uncharacterised-protein
MIQRKQTLYLLAALIVTIVCLCLPIASLKASGMEPDSIVTNLWIRSNAGISFFVSPLFALLLLTCPLTLWAIFKYHQRLFQVKLCVINMILIVLWYAYFAFFHFTSTASVSLRFAFCLPIIAFFLHHMARNAILADEKLVRDADRIR
>LR134384.1|VEH15595.1|1850100_1850436_-|Uncharacterised-protein
MDYKKSKAPVNTVTRDIMELCKETGNIYESVAIISKRSNQISVEIKQDLNKKLAEFASYNDSLEEVFENREQIEISRYYEKLPKPTLLATEEFIEGNVYWRDPSKETNVEE
>LR134384.1|VEH15596.1|1850443_1851304_-|DNA-uptake-lipoprotein
MFDMKKKGLLPICMVLLFSSCAQEFNKVYKTDNYQYKYEFAKECYAKGRYTQAITLLTDLINIQKGTDNAQESLYMLAMAEYGSMDYEGAAQAFKRYYQSYPKGYLAEMAHYYEGLSLYKSTPEPRLDQSMTVSAINAFQTYLDLYPDAKLKPEAQKYLFELQDKLVLKELYSARLYYNLGPYFGNCSDGGNNYEACIVTCQNALKDYPYTALREEFSLLLMKSKFELAEQSVETKRLERYQDAEDECYGFINQFPDSKDKSIAEKFIARCKKYTGESSTDNNNNN
>LR134384.1|VEH15597.1|1851743_1851977_+|Uncharacterised-protein
MLKSSAICIKIHCNMPQIGTRFGPNNGVIRIKLQRFMNEITHQILWRDKIKPVFQLFHFYLLISQSVKTEHYYLHKK
>LR134384.1|VEH15598.1|1852168_1854217_+|excinuclease-ABC-subunit-B
MDFKLTSKYSPTGDQPEAIEQLTEGIKEGIPAQVLLGVTGSGKTFTVANVIANANKPTLILSHNKTLAAQLYEEMKGFFPDNAVEYYVSYYDYYQPEAYLPTSDTYIEKDLAINDEIDKLRLGAVSALLSGRKDVIVVSSVSCIYGMGGPVAMQESIIKIKRGQTLDRNEFLRKLVDALYVRNDIDLQRGTFRVKGDTVDISMAYSDNILRVTWWDDEIDCIEEVDSATFHSLERFETYEIYPANLFVTSKEQTERAIRMIQDDLTERVEYFNSIGDNIKAQRVKERVEYDMEMIKELGHCSGIENYSRYFDGRQPGERPYCLLDFFPKDYLMVIDESHVSVPQINAMYGGDRARKQNLVEYGFRLPAAFDNRPLRFEEFHSLINQIIYVSATPAKYEIEEAEGVIVEQIIRPTGLLDPEIEVRPSENQIDDLMDEILTRIHRQERVLVTTLTKRMAEELTEYLLNHEIKANYIHSDVATLDRVKIMNDLRAGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARNVNGKVIMYADTITESMQKTIDETARRRSIQLKYNEDHHITPKQIKKQIGSSLASLSVESNDRKNAATQNGKYPGIYLEPESGAFAADPIVKRMSKAELEKSIANTTALMKQAAKDLDFIQAAQYRDEIIRLQEQLKDKV
>LR134384.1|VEH15599.1|1854179_1854329_-|Uncharacterised-protein
MTKLLKKDERTDGVTLDFPNLTIINKNRFPILFSHLGFILCLSTVPASG
>LR134384.1|VEH15600.1|1854347_1855145_+|Uncharacterised-protein
MKNLFIAICCLVPAIGIAQTVTPIPANKVEILKAEAARKAAEAKKAAEEAKRAAEEALKAAEEAEQATQATQQQKDSWTIPQQTKQQSQPVVSKTTNPYEGYLAGAVPEQDGKVTFELRKTATNMNASEIYKRVYNVLNNLAHDEHQAGNSRIALVNEAEHMIAAKYEEWLVFSQNLLSLDRTKFNYTIVAKCQNGQLELTLSRINYNYEEDRPSGFKATAENLIADRVALTKKGTKLQRMNAKFRMKTVDRVNEIFNEIKQALK

Crispr_ID: LR134384_14

• CRISPR_ID: LR134384_14
• CRISPR_location: 2818807-2818982
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134384_14

Consensus_repeat	Method
TTTCAATTCCAACAAGAGTGCAATCATAACCCTTCATAAAGC	CRISPRCasFinder

spacers of LR134384_14

>14.1|2818849|92|LR134384|CRISPRCasFinder
CTATTGCAAGGCAAAACTACATTAAATTCAATTCCAACAAGAGTGCAATCACAACCCTTCATAAAGCCTATTGCAAGGCAAAACTACATTAG

CRISPR arrays and Neighbor proteins around LR134384_14

CRISPR arrays

The CRISPR arrays of LR134384_14

>merge|LR134384|14|2818807-2818982|CRISPRCasFinder
TTTCAATTCCAATAAGAGTGCAATCATTACCCTTCATAAAGCCTATTGCAAGGCAAAACTACATTAAATTCAATTCCAACAAGAGTGCAATCACAACCCTTCATAAAGCCTATTGCAAGGCAAAACTACATTAGTTTCAATTCCAACAAGAGTGCAATCATAACCCTTCATAAAGC

>LR134384|14|13|2818807-2818982|CRISPRCasFinder
TTTCAATTCCAATAAGAGTGCAATCATTACCCTTCATAAAGC	CTATTGCAAGGCAAAACTACATTAAATTCAATTCCAACAAGAGTGCAATCACAACCCTTCATAAAGCCTATTGCAAGGCAAAACTACATTAG
TTTCAATTCCAACAAGAGTGCAATCATAACCCTTCATAAAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH16415.1|2811669_2812374_-|hemolysin	unknown	unknown	gnl|CDD|224191
LR134384.1|VEH16417.1|2815542_2815992_+|Transposase-and-inactivated-derivatives,-IS30-family	unknown	unknown	gnl|CDD|225382
LR134384.1|VEH16421.1|2817971_2818613_+|RlpA-like-protein-precursor	unknown	unknown	gnl|CDD|223868
LR134384.1|VEH16418.1|2816037_2816433_+|Transposase-and-inactivated-derivatives,-IS30-family	unknown	unknown	gnl|CDD|225382
LR134384.1|VEH16424.1|2820689_2821175_-|50S-ribosomal-protein-L17	unknown	unknown	gnl|CDD|235522
LR134384.1|VEH16429.1|2823904_2824123_-|Translation-initiation-factor-IF-1	unknown	unknown	gnl|CDD|178954
LR134384.1|VEH16416.1|2812558_2814754_-|Ribonuclease-R	unknown	unknown	gnl|CDD|273947
LR134384.1|VEH16430.1|2824138_2824885_-|Methionine-aminopeptidase-1	unknown	unknown	gnl|CDD|235576
LR134384.1|VEH16422.1|2819248_2819941_-|Surface-antigen	unknown	unknown	gnl|CDD|379218
LR134384.1|VEH16425.1|2821214_2822207_-|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl|CDD|235359
LR134384.1|VEH16426.1|2822219_2822825_-|BS5	unknown	unknown	gnl|CDD|235411
LR134384.1|VEH16420.1|2816918_2817653_+|Uncharacterized-oxidoreductase-SAV2478	unknown	unknown	gnl|CDD|187608
LR134384.1|VEH16423.1|2820177_2820630_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16428.1|2823277_2823658_-|BS14	unknown	unknown	gnl|CDD|235358
LR134384.1|VEH16412.1|2808145_2808256_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16413.1|2808665_2808755_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16419.1|2816649_2816922_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16431.1|2824938_2826276_-|preprotein-translocase-subunit-SecY	unknown	unknown	gnl|CDD|236412
LR134384.1|VEH16427.1|2822869_2823259_-|30S-ribosomal-protein-S11	unknown	unknown	gnl|CDD|180007
LR134384.1|VEH16414.1|2808981_2811459_-|Glutamyl--and-glutaminyl-tRNA-synthetases	unknown	unknown	gnl|CDD|379818

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH16415.1|2811669_2812374_-|hemolysin	gnl|CDD|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	8.55765e-48
LR134384.1|VEH16417.1|2815542_2815992_+|Transposase-and-inactivated-derivatives,-IS30-family	gnl|CDD|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	8.22733e-20
LR134384.1|VEH16421.1|2817971_2818613_+|RlpA-like-protein-precursor	gnl|CDD|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.59065e-37
LR134384.1|VEH16418.1|2816037_2816433_+|Transposase-and-inactivated-derivatives,-IS30-family	gnl|CDD|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	5.40979e-33
LR134384.1|VEH16424.1|2820689_2821175_-|50S-ribosomal-protein-L17	gnl|CDD|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.71114e-57
LR134384.1|VEH16429.1|2823904_2824123_-|Translation-initiation-factor-IF-1	gnl|CDD|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	1.04228e-47
LR134384.1|VEH16416.1|2812558_2814754_-|Ribonuclease-R	gnl|CDD|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
LR134384.1|VEH16422.1|2819248_2819941_-|Surface-antigen	gnl|CDD|379218	pfam13488, Gly-zipper_Omp, Glycine zipper.	1.01622e-05
LR134384.1|VEH16425.1|2821214_2822207_-|DNA-directed-RNA-polymerase-subunit-alpha	gnl|CDD|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	7.50321e-154
LR134384.1|VEH16426.1|2822219_2822825_-|BS5	gnl|CDD|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	6.17246e-120
LR134384.1|VEH16420.1|2816918_2817653_+|Uncharacterized-oxidoreductase-SAV2478	gnl|CDD|187608	cd05350, SDR_c6, classical (c) SDR, subgroup 6. These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.98398e-48
LR134384.1|VEH16428.1|2823277_2823658_-|BS14	gnl|CDD|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	3.55292e-78
LR134384.1|VEH16430.1|2824138_2824885_-|Methionine-aminopeptidase-1	gnl|CDD|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.66617e-131
LR134384.1|VEH16431.1|2824938_2826276_-|preprotein-translocase-subunit-SecY	gnl|CDD|236412	PRK09204, secY, preprotein translocase subunit SecY; Reviewed.	0
LR134384.1|VEH16427.1|2822869_2823259_-|30S-ribosomal-protein-S11	gnl|CDD|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	1.47223e-74
LR134384.1|VEH16414.1|2808981_2811459_-|Glutamyl--and-glutaminyl-tRNA-synthetases	gnl|CDD|379818	pfam16313, DUF4953, Met-zincin. This is a family of uncharacterized proteins that carry the highly characteristic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.	7.57764e-124

Protein sequences

>LR134384.1|VEH16421.1|2817971_2818613_+|RlpA-like-protein-precursor
MDHKRILLSILIILLALPLIAQQQKGKASYYSKKATGARTASGERLHHDSMTCAHRTYPFGTLLKVTNPNNGNSVVVKVTDRGPFGRGRIIDLSYGAAKELGILACGVATVVVEKVGKGVPYLEEDSIRLPQIDFEVVANHYNIIDDWKNRDGVVDKKMMHNAKNIATTRKRQQAKKPNKQTEDMQKDNKTSPAKKEKENRWNNVFERLKGLF
>LR134384.1|VEH16420.1|2816918_2817653_+|Uncharacterized-oxidoreductase-SAV2478
MKKAIVMGASSGIGHEVARLMIERGWTVGVAARRVDRLEELRACAPERVFTARIDVTDAHAEEALRKLIDRMGGLDLYFHAAGIGWKNPMLQADKELMTMQTNAMGFTRMVGAAYRYFAGNGGGHIACITSIAGTKGLGPAPAYSATKAMQNTYLQALEQLATNKKLNISFTDIRPGFVDTPLLTGSSHFPMLMNAEKVAKSIMKAIDKRRHIYIIDWRWHILTTLWQHIPNWVWRKMKLVKDE
>LR134384.1|VEH16419.1|2816649_2816922_+|Uncharacterised-protein
MGLFSNKNKKTDFTIERQFVTTLPSIKGYEIVEQRGLCYQYSITYDLDSCLDKLLKKAYKAGCNAFVNLKIEKGPNYTVIYGDGVIINRQ
>LR134384.1|VEH16418.1|2816037_2816433_+|Transposase-and-inactivated-derivatives,-IS30-family
MVERSSNLGIIRKLAKYKTAREVSKAVTEALKPIKDAVHTITTDNGPEVMQYEDIEKSLGCSVYYAHPHCPWQKGAVENRNMLIRQYIDKRCNTNKLSTQYIAAMEAKLNDRPRKKLNFRTPKFVFYKKLK
>LR134384.1|VEH16417.1|2815542_2815992_+|Transposase-and-inactivated-derivatives,-IS30-family
MSKKAIAEAIGVHRSTVYREIERNSSEYTGKYTYTVAVRRARRRKRRYQRPRKMTPEMWRNISKYLRMGWSAQQICGRMKALGRKCVSHTTIYKYIWRDRNAGGDIYKYCRFLFKYRNHWLKRDQKSLSGNRKSIDERPACADGKRFGD
>LR134384.1|VEH16416.1|2812558_2814754_-|Ribonuclease-R
MGKGKKGGKRMSKKQLCERLQNFFTSQPGKKLSFKEIFRALKLDTHPLKMMAIDIMEEMAWDDFLTRVTDSSYKLNTKGQVQEGTFVRKANGKNSFLPDDGGSPIFVSERNSMWATNGDRVKVSFMARRQKHIKEAQVIEIIQRNKDRFVGRLRVDRDFAYLITPENTFVHDIIIPKKKLKGGKTNDKAIVKITQWPDAEHKNLLGEVVDVLGQTGNNDVEMNTILAQYGLPYVYPKAVEEAAEKISAEITKQDEAEREDFRDVFTCTIDPHDAKDFDDALSVKRLDKGLWQVGVHIADVSHYVTEGSIIDKEAMKRATSVYLVDRTIPMLPERLCNFICSLRPDEDKLAYSVIFNLDDEANVKAYRIVHTIIRSNRRYAYEEVQEILEANGVKDGTGEPAPKAPKGGYQGENADQLITLDRLAKQLRARRFKGGAVKFDREELHFDIDAQGKPTRCYFKRSRDANKLIEEFMLLANRTVAESIGKVKKGQKKKTLPYRIHDNPDPQKMETLRQFIVKFGYKVKTDGTKSAMARSLNKLMDDCNDKPEAKMIQSVALRAMMKAKYSVHNIGHFGLAFDYYTHFTSPIRRYPDTMVHRLLTRYANGGRSANEKHYEELCEHCSEMELVAQNAERDSIKYKMVEFMADKVGETYDAHISGITSYGIYAEIDENHCEGMIPMRDLGDDYYDFNERNFCLVGRRHHHKYQLGDAIRIQVARADLEKKQLDFTVAE
>LR134384.1|VEH16415.1|2811669_2812374_-|hemolysin
MTIADKQLTLLKKLTIMKLKIHFNHREELWNAWSHAGGIIMGIVVGIIFLIWCFREHNGWATAGIILYLFGMLCSYIASTVYHSLSAWSKWKERLRKWDHAAIYWHIAGSYSPITLIALRDQGYWGLTLFCFIWACAIAGTVISFVNLKDHSNLETIAFVGMGLSVLVAFKPLIDALTTSAFIWIIAEGVCYITGAVFYSINKRKYMHTVFHFFVLAGSICHIIAVWDILMKYI
>LR134384.1|VEH16414.1|2808981_2811459_-|Glutamyl--and-glutaminyl-tRNA-synthetases
MKHLIATFALSILTTTTTWAVPHSLNTWAKDSTEVKKDNETNKKKPEKKEDDYEKLMKKGGSFQQGLFDVRHIEKDWYFEIPEAALGRLFLAVTRFVSVPQDFGMLSGEEVNYNTVYFERYDDKTMFLRSWAHSQTADPKSNISELVRKATIDPIVYKFDIIGKDKKTGKMLVNVTKLFKGDNKIAGFTANDRTQVKLGTLQDDRTFIDTIKTYPINIEVSTLRTYAANPGKSMASRQGFMTLSLNTSIVQLPEEPMRPRLADERVGYFDNRLVTFSDRETSKHDAIISRYRLVPKDKKAYAKGKLVEPEKQIVYYIDPATPKEWVPYLIQGINDWNKAFEAAGFKNAIVGKEVPEDSDISPDDARYSFLRYLPSEQENAYGPRIVDPRSGEIIESHICWYHNVMNLLTKWYMTQCGPLDKRAQTMKFDKDLMGKLIRFVSSHEVGHTLGLRHNMIASNATPVEKLRDKAWVEKHGHTASIMDYARFNYVAQPEDNIGEAGLFPRINDYDNWAIKWGYQYRPEFKDEFDEKKTLRSEVTKMLTNNKRLRYKGDEGRGRDPRSQTEDLGDNDITAAEYGVKNLKRVMQNIVKWTAQPDDQTDDLSNMYSSVRGQFQRYSNHAQRHIAGVYSDNWPSARKNDIVPAVLQKQAIAWFGRHLFTIPTWLYPDSIVNKLGVDADNEVTMRANAVLSYLLSAYILYNCINNSFTASQPYPVNDYLNDVFQAAWKPMSKTDLRGNNFRRRLEQNYVEHIGQAIYTSKTPKENIKFTRSDVTLYALKHLDKIDNFCRQQLKTTDANSINALHYNNLLLKTKKIRDAYNKPDND
>LR134384.1|VEH16413.1|2808665_2808755_-|Uncharacterised-protein
MITLMIVLAVVVVTVSLAVNVNDKISMGR
>LR134384.1|VEH16412.1|2808145_2808256_+|Uncharacterised-protein
MDTKKTALPQILQDFRREDDNETTEVHIIESDVWYT
>LR134384.1|VEH16422.1|2819248_2819941_-|Surface-antigen
MKKLVVYAACATLLFSSCDTYTGSGAYMGSSLGSILGSAIGGIADGPRGSDFGTIIGMAGGAAIGAAIGQAADQRRAAEMEEYQYDRAKRNYERKMRERQQNSDVSSYQEAPSTDSGYDETNSGDDRIYDFNGKDYQTDASTSTATTKMPTASSVENIAEGLVYTPNIEIRNARFLDENGNGIIERGELSKVIFEVMNRGDRPLYDVQPVVLVANGNRHLFVSPSIILRK
>LR134384.1|VEH16423.1|2820177_2820630_+|Uncharacterised-protein
MRKKTNNFWPLIIEWIDDFQAANKDYIDKHITDFLGEIDRKEWVEISLALGARCQEYIEKKGYQTLIYNGFAMKDRRKPFIPNSLSLKELDKYTPPFIILAKNTIEIQQAYLRADELGKKLQKRAYYWQYKDDNVYSTNVYIAQQEKEGI
>LR134384.1|VEH16424.1|2820689_2821175_-|50S-ribosomal-protein-L17
MRHNKKFNHLGRTASHRDAMLANMAVSLIMHKRITTTLAKAKALKKYVEPLITRSKEDTTNSRRVVFRYLQKKEAIKELFSTVAAKVADRPGGYTRVIKLGTRQGDAAEIAFIELVDFDDNMAKAPKAAKKTRRSRKATKAEAAAETPTTEAPATEEAKAE
>LR134384.1|VEH16425.1|2821214_2822207_-|DNA-directed-RNA-polymerase-subunit-alpha
MAILAFQKPDKVVMLEASEKFGKFEFRPLEPGFGVTIGNALRRILLSSLEGYAINTIRIAGVEHEFSSVPGVKEDVTNIILNLKQVRFKQVVEEFENEKVSITVENSTEFKAGDIGKYLTGFEVLNPDLVICHLDAKASMQIDLTINKGRGYVPADENREFCTDVNVIPIDSIYTPIRNVKYSVEPYRVEQKTDYDKLVIEVSTDGSIHPKDALKEAAKILIYHFMLFSDEKITLESPDQDGNQEFDEEVLHMRQLLKTKLVDMNLSVRALNCLKAADVETLGDLVQYNKTDLLKFRNFGKKSLSELDDLLESLNLSFGTDISKYKLDRE
>LR134384.1|VEH16426.1|2822219_2822825_-|BS5
MARYIGPKSKIARRFGEPIFGADKVLSKRNFPPGQHGNNRRRKMSEYGVMLAEKQKAKYTYGVLERQFRNMFEKAAKADGITGEVLLQNLECRLDNVVFRLGIAPTRAAARQLVGHKHITVDGKVVNIPSFAVKPGMVIAVREKSKSLEVIEAALAGFNHSKYPWIEWDDNSKCGKFLHKPERADIPENIKEQLIVELYSK
>LR134384.1|VEH16427.1|2822869_2823259_-|30S-ribosomal-protein-S11
MAKTKATSKKRNVRVDAIGQLHVHSSFNNIIVSLANSEGQVISWSSAGKMGFRGSKKNTPYAAQMAGEDCAKIAFELGLRKVKAYVKGPGNGRESAIRAVNAAGIQVTEIIDVTPLPHNGCRPPKRRKV
>LR134384.1|VEH16428.1|2823277_2823658_-|BS14
MAIRIVGVDLPQNKRGEIALTYIYGIGRSSSAKILDKAGVNRDLKVSEWTDDQAAKIREIIGAEFKVEGDLRSEIQMNIKRLMDIGCYRGVRHRNGLPVRGQSTKNNARTRKGKKKTVANKKKATK
>LR134384.1|VEH16429.1|2823904_2824123_-|Translation-initiation-factor-IF-1
MAKQSAIEQDGTIVESLSNAMFRVELENGVQIVAHISGKMRMHYIKILPGDKVKVEMSPYDLTKGRIVFRYK
>LR134384.1|VEH16430.1|2824138_2824885_-|Methionine-aminopeptidase-1
MRKANQLVGATLAELGKHIQPGVTTLQLDKIAEEFIRDHGATPTFKNFPNPFGGPFPASICTSVNDVVVHGIPSDKVVLKEGDIISIDCGTLLDGYNGDSCYTFAVGEVSPEVRQLLDVTKESLYKGIEQAVAGKHVGDIGAAVQDYCESFGYGVVRELTGHGIGKEMHEAPQIPNYGVRGNGVMLKAGMCIAIEPMITMGERNIWMLSDKWSIVTRDRKPAAHFEHTIAIRKGKAEILSTFEEIENH
>LR134384.1|VEH16431.1|2824938_2826276_-|preprotein-translocase-subunit-SecY
MKKFIETLKNCWKVEDLRQRLLITILFTAIYRFGSFVVLPGINPAKLETLQSQTAGGLMSLLDMFSGGAFSNASIFALGIMPYISASIVMQLLAVAVPYFQKMQREGESGRKKINWYTRLLTIAILVFQAPAYLMNLKTQAGQALASGVSWTVFIIPATIILAAGSMFILWLGERITDKGVGNGISLIIMIGIIARLPQAFIQEVTSRFTAISGGGIVMFIVEILILYAVVCASILLVQGTRKVPVQYAKRIVGNKQYGGARQYIPLKLFAANVMPIIFAQALMFIPLVIVQYQSENASWVVRSLMDNRSVLYNVIYVVLIIAFTYFYTAITLNATQMAEDMKRNNGFIPGVKPGKDTAEYIDTIMSRITFPGSLFIAFIAIMPALAGLLNVQQGFSQFFGGTSLLILVGVVIDTLQQIESHLMMRHYDGLLNSGHTRNGGVSAY

Crispr_ID: LR134384_15

• CRISPR_ID: LR134384_15
• CRISPR_location: 2922085-2922216
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LR134384_15

Consensus_repeat	Method
ATGATGAGTCGGGATTAGGCGACATTTCGCACACAAAGTAAACC	CRISPRCasFinder

spacers of LR134384_15

>15.1|2922129|44|LR134384|CRISPRCasFinder
TACAAGAAATAAAAAAGAGAGACTAAAAAGCCTCTCTTCTTAAC

CRISPR arrays and Neighbor proteins around LR134384_15

CRISPR arrays

The CRISPR arrays of LR134384_15

>merge|LR134384|15|2922085-2922216|CRISPRCasFinder
ATGATGAGTCGGGATTAGGCGACATTTCGCACACAAAGTAAACCTACAAGAAATAAAAAAGAGAGACTAAAAAGCCTCTCTTCTTAACATGATGAGTCGGGATTAGGCGACATTTCGCACACAAAGTAAACC

>LR134384|15|14|2922085-2922216|CRISPRCasFinder
ATGATGAGTCGGGATTAGGCGACATTTCGCACACAAAGTAAACC	TACAAGAAATAAAAAAGAGAGACTAAAAAGCCTCTCTTCTTAAC
ATGATGAGTCGGGATTAGGCGACATTTCGCACACAAAGTAAACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH16510.1|2915714_2916407_-|PASTA-domain	unknown	unknown	gnl|CDD|275384
LR134384.1|VEH16526.1|2931996_2932356_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16519.1|2923608_2924925_-|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl|CDD|223841
LR134384.1|VEH16511.1|2916539_2916695_-|50S-ribosomal-protein-L34	unknown	unknown	gnl|CDD|179004
LR134384.1|VEH16523.1|2928022_2929228_+|Acetate-kinase	unknown	unknown	gnl|CDD|234680
LR134384.1|VEH16525.1|2931047_2931944_+|SPFH-domain-/-Band-7-family	unknown	unknown	gnl|CDD|366488
LR134384.1|VEH16509.1|2914621_2915755_-|Ribosomal-large-subunit-pseudouridine-synthase-D	unknown	unknown	gnl|CDD|223638
LR134384.1|VEH16516.1|2920828_2921596_-|UDP-2,3-diacylglucosamine-hydrolase	unknown	unknown	gnl|CDD|277343
LR134384.1|VEH16508.1|2913606_2914602_-|D-alanine--D-alanine-ligase-A	unknown	unknown	gnl|CDD|234993
LR134384.1|VEH16512.1|2916947_2917514_+|Elongation-factor-P	unknown	unknown	gnl|CDD|234788
LR134384.1|VEH16513.1|2917593_2918643_+|Chondroitin-polymerase	unknown	unknown	gnl|CDD|133016
LR134384.1|VEH16524.1|2929353_2930397_+|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl|CDD|238571
LR134384.1|VEH16514.1|2918747_2919452_+|DNA-repair-protein-RadC	unknown	unknown	gnl|CDD|178801
LR134384.1|VEH16517.1|2921596_2921917_-|FeS-assembly-SUF-system-protein	unknown	unknown	gnl|CDD|131990
LR134384.1|VEH16521.1|2926054_2926834_+|DNA-integrity-scanning-protein-DisA	unknown	unknown	gnl|CDD|224539
LR134384.1|VEH16515.1|2919498_2920731_-|exosortase-A-system-associated-hydrolase-1	unknown	unknown	gnl|CDD|378820
LR134384.1|VEH16528.1|2932841_2933198_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16527.1|2932391_2932769_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16520.1|2924932_2925910_+|Dihydropteroate-synthase	unknown	unknown	gnl|CDD|273657
LR134384.1|VEH16522.1|2926959_2927982_+|Phosphate-acetyltransferase	unknown	unknown	gnl|CDD|236609

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH16510.1|2915714_2916407_-|PASTA-domain	gnl|CDD|275384	sd00037, PASTA, PASTA domain. PASTA domain is found at the C-termini of several penicillin-binding proteins (PBPs) and bacterial serine/threonine kinases. It is a small globular domain consisting of 3 beta-sheets and an alpha-helix. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain.	2.30032e-15
LR134384.1|VEH16519.1|2923608_2924925_-|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl|CDD|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	7.91264e-115
LR134384.1|VEH16511.1|2916539_2916695_-|50S-ribosomal-protein-L34	gnl|CDD|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	3.77676e-12
LR134384.1|VEH16523.1|2928022_2929228_+|Acetate-kinase	gnl|CDD|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
LR134384.1|VEH16525.1|2931047_2931944_+|SPFH-domain-/-Band-7-family	gnl|CDD|366488	pfam01145, Band_7, SPFH domain / Band 7 family. This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals.	6.35256e-15
LR134384.1|VEH16509.1|2914621_2915755_-|Ribosomal-large-subunit-pseudouridine-synthase-D	gnl|CDD|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	6.91203e-114
LR134384.1|VEH16516.1|2920828_2921596_-|UDP-2,3-diacylglucosamine-hydrolase	gnl|CDD|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.30989e-45
LR134384.1|VEH16508.1|2913606_2914602_-|D-alanine--D-alanine-ligase-A	gnl|CDD|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	4.86163e-125
LR134384.1|VEH16512.1|2916947_2917514_+|Elongation-factor-P	gnl|CDD|234788	PRK00529, PRK00529, elongation factor P; Validated.	1.23521e-89
LR134384.1|VEH16513.1|2917593_2918643_+|Chondroitin-polymerase	gnl|CDD|133016	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.	4.85323e-45
LR134384.1|VEH16524.1|2929353_2930397_+|5-dehydro-2-deoxygluconokinase	gnl|CDD|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	3.39467e-63
LR134384.1|VEH16514.1|2918747_2919452_+|DNA-repair-protein-RadC	gnl|CDD|178801	PRK00024, PRK00024, DNA repair protein RadC.	4.54795e-76
LR134384.1|VEH16517.1|2921596_2921917_-|FeS-assembly-SUF-system-protein	gnl|CDD|131990	TIGR02945, SUF_assoc, FeS assembly SUF system protein. Members of this family belong to the broader pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.62513e-43
LR134384.1|VEH16521.1|2926054_2926834_+|DNA-integrity-scanning-protein-DisA	gnl|CDD|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	4.27096e-70
LR134384.1|VEH16515.1|2919498_2920731_-|exosortase-A-system-associated-hydrolase-1	gnl|CDD|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	5.8056e-11
LR134384.1|VEH16520.1|2924932_2925910_+|Dihydropteroate-synthase	gnl|CDD|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	7.28803e-83
LR134384.1|VEH16522.1|2926959_2927982_+|Phosphate-acetyltransferase	gnl|CDD|236609	PRK09653, eutD, phosphotransacetylase.	5.43162e-158

Protein sequences

>LR134384.1|VEH16517.1|2921596_2921917_-|FeS-assembly-SUF-system-protein
MTQEEKTRIEERIVDVLKTVYDPEIPVNIWDLGMIYKIDVKEDGCVDLDMTFTAPNCPAADFILEDVRTKVDSVEGVVSTNVNLVFEPAWDQSMMTEEARVELGFD
>LR134384.1|VEH16516.1|2920828_2921596_-|UDP-2,3-diacylglucosamine-hydrolase
MGKNVYFLSDAHLGSLAIPHGRTQERRLVRFLDSIKEKASAVYLLGDMFDFWNEYRYVVPKGYSRFLGKLSELTDNGVEVHFFAGNHDLWTYGYLEEECGVIVHKAPVTTEIYGKVFFLAHGDGLGDPDNKFKILRKLFHNHTCQRLLNFVHPRWGMALGLNWAKHSRLKRADGKEVPFMGEDKEFLVRFARDYKRSHPNIDYFLFGHRHIELDLPIDKSTRMLILGDWIWQFTYAVFDGEHLFLGEYVEGESKF
>LR134384.1|VEH16515.1|2919498_2920731_-|exosortase-A-system-associated-hydrolase-1
MMKKALLLLCLLCPFFGVSAQHAMDGVWTGKLNVGPQTLTLVLHVAHETSENAVCSLDSPDQGAMNIPVKSDYCSADSISVSLEQLGLSYQGRLKGDEIVGTFTQGLAFPLTLKRGEEKLKRPQNPVEPFPYKTEEVTFINATDKATLVGTLSYPIDYKKGKTPVVLMVTGSGQENRDEEIFGHKPFLVIADYLARHGVASLRYDDRGFGKSTGGDVKHATTADFARDAASGIEFLRTLKCFSKVGVLGHSEGGSIAFILGAKGKVDFVISMAGIGVRGDTALTAQANRLLELSGQPMRLSTLQYRVNAYMKKSPWLNFFMDYDPSGDISKTLCPVMAINGERDVQVISSLNLIGIKAHLTENPKNFVKEYPALNHLFQHCTTGNVSEYRLIEETISPEVLEDIVRFIKQ
>LR134384.1|VEH16514.1|2918747_2919452_+|DNA-repair-protein-RadC
MEAELNNTYKSIVHWAEEDRPREKLERLGPSALSNAELLGILIGSGTPNESAVDLMKRIMMDCNNNLNTLGKLSIQQLEQYKGVGPAKAITILAACELGKRRAMEKAEERQSIDSSKAIYEYLHPRMQDLDVEEAWVMLLNQHYKLIKALRISHGGISETAVDVRIILKEALLCNATVLALAHNHPSNHAQPSGPDDQLTQRVKKACEALRIYFLDHVIITDGTYYSYHDSGRL
>LR134384.1|VEH16513.1|2917593_2918643_+|Chondroitin-polymerase
MKYSVIVPVFNRPDEVAELLESLTVQSLTDFEVIIVEDGSKEPCETVCKQYEKQLDIKYFMKENSGPGQSRNYGAARSEGEYLLILDSDVVLPAGYIAAIDEELQREPADAFGGPDRAHESFTDTQKAISYSMTNFFTTGGIRGGKKKLDKFYPRSFNMGIRRDVYERLGGFSKMRFGEDIDFSIRIFKAGCSCRLFPKAWVWHKRRTDFRKFWRQVYNSGIARINLYKKYPESLKLVHLLPMVFTVGCALLAFLFLLGILLFFILPSGMMQAVGLGLSILALQPLILYSFLIFADATSKNHSAKIGLLSVTSAFIQLIGYGCGFIEAWWKRCVKGKDEFSAYQSNFYK
>LR134384.1|VEH16512.1|2916947_2917514_+|Elongation-factor-P
MINSQEIKIGTCIRMDGGIWKCIDFQHRKPGKGNTVMNTKLKNVADGRVLERTFQVGFKLDDVRVEHRPYQYLYEDPTGYIFMNQETFEQIPINKEQITGVEFMKEGDIVDVVTDTTDGTILSAEMPVKTILKVVHSEPGIKGNTATNATKPATLESGVEIRVPLFINEGETIQVDTRDGSYLGRISE
>LR134384.1|VEH16511.1|2916539_2916695_-|50S-ribosomal-protein-L34
MKRTFQPHNRRRVNKHGFRERMATKNGRRVLASRRAHGRKKLTVSDENHGK
>LR134384.1|VEH16510.1|2915714_2916407_-|PASTA-domain
MKSSDFLNKFKSWYLWKNLIAMAAVVVLLCLGVKFGLDLYTHHGESIPIPNLRHKQLADAEHILNSLGLELQVVDTGYVKSLPADCILEQSLVPGERVKSGHIIYVTINSPHSPTMTIPDVIDNCSLREAMAKLTAMGFHLETPQYIPGERDWVYGILVNGRHVVAGDKVSVEAALVIQVGNGMRSADDSIDYVDPAVEDTPEDKGDVDEFEVVSGPDAKEPAKGHSSSE
>LR134384.1|VEH16509.1|2914621_2915755_-|Ribosomal-large-subunit-pseudouridine-synthase-D
MQKNLPRGIAAVNEKSLLKGIDMAEVLNYDIEDLETDEQQLFEHWKVEVDMGQTPVRIDKFLAEKNPYQSRNRIQQAADSGFIHVNDKPVKSNYKVRPGDVITLMLDRPKHDTSIVAEDIPLDIVYEDDVLMVINKQAGMVVHPGAGNFTGTLINAVAWHLKDLESFDANDPEVGLVHRIDKDTSGLLVVAKTADAKSALGKQFFNKSTHRSYNALVWGNLIDDEGTIEGNIARDPKNRLRMKVFSLDSGIGKNAVTHYRVIERFGYTTLVECILETGRTHQIRAHMKHIGHPLFADATYGGEQVLRGQRSSTYKAFIQNCFKLCPRQALHAKTLGFVHPSTGRQMDFDSEWPDDFSQLIAKWRGYISGTTQDTFAE
>LR134384.1|VEH16508.1|2913606_2914602_-|D-alanine--D-alanine-ligase-A
MENLRRNIAIVCGGDSSEHDVSLRSAQGLYSFFDKEKYNVYIVDVKGTDWHVNFSDGATAAIDKNDFSFKHNGKTVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYLRGFGVRVADSILLRRGEDYDEEQIEKRLGMPCFVKPSADGSSFGVSKVKNADQLAPALRVAFMESNEVMIEGYLDGVEISQGIYKTHDKEVVLPATEVVTKNEFFDYDAKYNGQVQEITPARLSKETAAKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGMTATSFIPQQVRAAGLDIKDVLSDIVENQF
>LR134384.1|VEH16519.1|2923608_2924925_-|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MDIKQLYDLYQQHPCITTDSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAEADNDRLILVNDCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSAVLAERYNVMHTEGNFNNDVGVPKTLFRLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNVGRAHLLGFGSFEGVKQTKGELYDYLKAHDCLLFLNESNADLVDMARQREMNRIITYGQSDDANVRGEVIDSAPFLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMLAAITIGLHFGVTPGQINHALESYVPANNRSQLEVTAKNKLIVDAYNANPSSMAAAIENFKLMNVEHKMAILGDMRELGEVSDLEHQKLVDKLQADGFQEVWLVGEEFGKTHTNFRKFRNVDEVKAEIAAHCPKNCYILIKGSNGIKLFELPELL
>LR134384.1|VEH16520.1|2924932_2925910_+|Dihydropteroate-synthase
MNVVLQSYIFFCYDLIYNVNVLRLDRDLICIIKQNIITLQSMKPIDYTINVRGRLIDLGSPKVMGILNCTPDSFYAGSRKQTEHEIAERANQIISEGGTMIDVGAFSTRPGAQEVSEEEEMTRLKAALKTVRSVQPDAIVSVDTYRPAVARRCIEDWGADIINDVSEGGITGIVNTPIHEAENMFDVVGELKVPYILMSVKSNLHDMMIAFADEVQQLRDRGAKDIILDPGFGFGKTLEQNYEIYNGMEQLAALHLPLLVGISRKTMIYKLVGGDPSTALNGTTVLNTAALLKGAGILRVHDVREAVEAVQIVSAIQSGPVAEKP
>LR134384.1|VEH16521.1|2926054_2926834_+|DNA-integrity-scanning-protein-DisA
MMPFDFGIKDVIDIFLVALILYYLYRLMKESRSLNIFIGVMVFVLVWLFVSQVLEMRLLGSILDKLVGVGAIALIVLFQEEIRRFLYSLGAHQRIKQFSRFFGQRRDEKNREATRQMIMPIVLACMSMAKAKVGALIVIERSAPLDDIVETGDTIDANINQRLIENIFFKNSPLHDGAMIISRKRIKAAGCILPVSHNLDIPKELGLRHRAAMGISQDSDAVAIVVSEETGRISVAIRGQFHLRLSAEELESILTSEID
>LR134384.1|VEH16522.1|2926959_2927982_+|Phosphate-acetyltransferase
MDLLQQIIVRAKAHKQRIVLPEAEEERTLKAADKVLSDDIADLILIGNPTHIKELATQWNLKNIDKATIIDPQNNPKSEEYAEKLAELRKKKGMTIEQARELVTKNNLYLGCMIIKTEGADGQISGALSTTGDTLRPALQIIKCAPGITCVSGGLLLITKQKEYGENGVVVIGDVAVTPVPDAGQLAQIAVCTAETAKSVAGFAEPRVAMLSFSTKGSASHEVVDKVVEATKLAHELAPELQIDGELQADAALVPAVAAKKAPDSKIAGHANVLVVPNLEVGNIGYKLVQRLGDAIAIGPILQGIARPVNDLSRGCSVDDIYYMVAITACQAQDAKANEQ
>LR134384.1|VEH16523.1|2928022_2929228_+|Acetate-kinase
MKVLVLNCGSSSIKYKLYNMDDESVLAQGGVERIGIDNAFIKVKLPNGEKKQIMADLPTHKEGVALVFQCLLDPEFGAIKSLDEIDAVGHRIVQGGDKFNKSVILTKQVEEGIEELCDLAPVHNAGHLKGIRAVDALMPTTPQVCVFDNAFHSTMPDYAYLYAVPYELYEKYHVRRYGFHGTSHRYVSKRVCEILGLEVNNSKIITCHIGNGASVAAVLNGKVIDTSMGLTPLAGLMMGTRCGDIDPSAVTYLMEKLGKKPQEMADYLNKKSGVVGITGISSDMRDIENAASEGNERAQLALKMYDYRIKKYIGAYAAALGGVDAIVFTAGVGENQTGTREKACEGLEFLGIKIDVAKNATIRGEEAIISTPESKVKVVVVPTDEEIVIARDTKELVEKVK
>LR134384.1|VEH16524.1|2929353_2930397_+|5-dehydro-2-deoxygluconokinase
MNKKIVTFGEILFRLSKENHFRLPQGHVFNGDFGGSEANVAVSLAVMGDQVEYVTRVPDNAIGHASLMHLREFGLDVKHVVLGGDRLGSYFFESAAAMRNSMVVYDRENSSFYTLKHGDIQWEPIFQDAVLFHCSGITCAMSQDALNTTFDALELAKSMGVEITCDINYRKNLWRYPGADAPKTLHRLMEYSSFIFGDQNEWEVGSGLKHIPFEAEDASYQIDKAAYLDYFHQLQRQFPHCKRMLIALRNQIASTHHTLTGVLFAEGKLYTTRIYDINPVVDPMGCGDAFVAGFIHARMKWPDDDQHCLDFALSASALKNTIIGDQNLASEAEIIANMSAQGGRIDR
>LR134384.1|VEH16525.1|2931047_2931944_+|SPFH-domain-/-Band-7-family
MPTNNYNQRKLNATENNLLNVNFGQKLWFIVAAVIAVCAACLIFFKFVNPSYDEEAALKMKPIFFGNTRVDDEPVNSITLIAPTTTAVYFNILPQKKQFQFDDLLSNDNTPLDVNMYMIIQVRKGQTPSLLRNYGEEWFENFIEPYFRNKVREYVSSCSPFDLMSNREVLSAFDNKIKQSMRQYVASLSRKANFPIDIQQVITDRVMPNKEQLEEMNKTAASIQAKQTQEKRAEMELARAKAERNKAVADKAYMTELNLSPAQFIQLRAWDVIEKKHGANIDVLVGGGETPVWNIRRK
>LR134384.1|VEH16526.1|2931996_2932356_+|Uncharacterised-protein
MDYYLVFLVSIVILLFAFIVTILVWRIVYLMKTWKDEFHTEPGFLCPHTFFGHPPIPIGDIVEIKYTSSIRSWNSYIFFIKMANGGKTTFTISHNFSSQRDRLERELRVQGYDGPIEYM
>LR134384.1|VEH16527.1|2932391_2932769_+|Uncharacterised-protein
MHPYTILFDYTKEILVCSIIVGISSFIIYRRLLSRKYGEFHITHGYLCPHSILKIPPILIADITDIKFELLPRTGGSYRFFVTTSNGGVVHFIFRYHAFSERLRLQKELREIGYEGPFESMQRNS
>LR134384.1|VEH16528.1|2932841_2933198_+|Uncharacterised-protein
MQSILFLLGIFVIIYIIFVLLLRTFLRGNSYPKEFHTEPGYLCPHSHSSHKVIPIADIVEIKYRVMWRSWGAYSFFIKLANGGSAIFTIKHNARLERVRLEQELRARGYHGPFKHIPL

Crispr_ID: LR134384_16

• CRISPR_ID: LR134384_16
• CRISPR_location: 3036089-3036179
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: cas2,cas1,cas4,cas3,cas5,cas7

Consensus repeat of LR134384_16

Consensus_repeat	Method
TCGTTCTCCCCTCCTTGGGAGGGG	CRISPRCasFinder

spacers of LR134384_16

>16.1|3036113|43|LR134384|CRISPRCasFinder
CTGGGGGAGGTTTCCATTTGTTTCCTAAAAAGATGCTCTAAAC

CRISPR arrays and Neighbor proteins around LR134384_16

CRISPR arrays

The CRISPR arrays of LR134384_16

>merge|LR134384|16|3036089-3036179|CRISPRCasFinder
TCGTTCTCCCCTCCTTGGGAGGGGCTGGGGGAGGTTTCCATTTGTTTCCTAAAAAGATGCTCTAAACTCGTGCTCCCCTCCTTGGGAGGGG

>LR134384|16|15|3036089-3036179|CRISPRCasFinder
TCGTTCTCCCCTCCTTGGGAGGGG	CTGGGGGAGGTTTCCATTTGTTTCCTAAAAAGATGCTCTAAAC
TCGTGCTCCCCTCCTTGGGAGGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH16608.1|3035084_3035216_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16613.1|3041166_3041322_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16619.1|3046008_3047064_-|CRISPR-associated-protein-Cas7/Cst2/DevR,-subtype-I-B/TNEAP	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|187818
LR134384.1|VEH16616.1|3042582_3043101_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
LR134384.1|VEH16617.1|3043097_3045332_-|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|273707
LR134384.1|VEH16615.1|3041569_3042586_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|274695
LR134384.1|VEH16612.1|3037137_3038775_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16607.1|3034744_3034966_-|Protein-of-uncharacterised-function-(DUF2795)	unknown	unknown	gnl|CDD|378655
LR134384.1|VEH16610.1|3036316_3036853_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16602.1|3028309_3029866_-|gliding-motility-associated-protein-GldM	unknown	unknown	gnl|CDD|274624
LR134384.1|VEH16605.1|3032078_3032990_-|Bacteroidetes-specific-putative-membrane-protein	unknown	unknown	gnl|CDD|274625
LR134384.1|VEH16606.1|3033144_3034386_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|224292
LR134384.1|VEH16601.1|3027245_3028301_-|gliding-motility-associated-protein-GldN	unknown	unknown	gnl|CDD|274628
LR134384.1|VEH16611.1|3036806_3037064_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16614.1|3041301_3041565_-|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
LR134384.1|VEH16600.1|3026582_3027197_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|379226
LR134384.1|VEH16603.1|3029865_3030621_-|gliding-motility-associated-protein-GldL	unknown	unknown	gnl|CDD|274622
LR134384.1|VEH16604.1|3030617_3032069_-|Serine/threonine-protein-kinase-pkn1	unknown	unknown	gnl|CDD|274629
LR134384.1|VEH16609.1|3035413_3035584_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16618.1|3045334_3046009_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas5	COG1688_cas5_CAS-I	gnl|CDD|273860

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
LR134384.1|VEH16617.1|3043097_3045332_-|helicase-Cas3	cas3	COG1203_cas3_CAS-I	1.4e-77	256.3	4.3
LR134384.1|VEH16619.1|3046008_3047064_-|CRISPR-associated-protein-Cas7/Cst2/DevR,-subtype-I-B/TNEAP	cas7	cd09687_cas7_CAS-I-B	1e-54	180.5	0.6
LR134384.1|VEH16616.1|3042582_3043101_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	9.1e-52	170.2	2.8
LR134384.1|VEH16615.1|3041569_3042586_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	cas1	cd09722_cas1_CAS-I-B	3.9e-131	431.7	1.3
LR134384.1|VEH16614.1|3041301_3041565_-|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.2e-26	87.5	1.1
LR134384.1|VEH16618.1|3045334_3046009_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas5	COG1688_cas5_CAS-I	2.5e-16	54.7	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH16619.1|3046008_3047064_-|CRISPR-associated-protein-Cas7/Cst2/DevR,-subtype-I-B/TNEAP	gnl|CDD|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	6.40398e-51
LR134384.1|VEH16616.1|3042582_3043101_-|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.67231e-61
LR134384.1|VEH16615.1|3041569_3042586_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	gnl|CDD|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	7.73301e-161
LR134384.1|VEH16607.1|3034744_3034966_-|Protein-of-uncharacterised-function-(DUF2795)	gnl|CDD|378655	pfam11387, DUF2795, Protein of unknown function (DUF2795). This family of proteins has no known function.	5.53804e-13
LR134384.1|VEH16617.1|3043097_3045332_-|helicase-Cas3	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	9.73023e-63
LR134384.1|VEH16602.1|3028309_3029866_-|gliding-motility-associated-protein-GldM	gnl|CDD|274624	TIGR03517, GldM_gliding, gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.	2.2942e-173
LR134384.1|VEH16605.1|3032078_3032990_-|Bacteroidetes-specific-putative-membrane-protein	gnl|CDD|274625	TIGR03519, bacteroidetes-specific_membrane_protein, type IX secretion system membrane protein, PorP/SprF family. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that have type IX secretion systems (T9SS) and exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.	3.34043e-66
LR134384.1|VEH16606.1|3033144_3034386_-|Uncharacterised-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	6.63392e-65
LR134384.1|VEH16601.1|3027245_3028301_-|gliding-motility-associated-protein-GldN	gnl|CDD|274628	TIGR03523, hypothetical_protein_P700755_05002, gliding motility associated protien GldN. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldN is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldN abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein also include those which are not believed to express the gliding phenotype, such as Prevotella intermedia and Porphyromonas gingivales.	5.39846e-82
LR134384.1|VEH16603.1|3029865_3030621_-|gliding-motility-associated-protein-GldL	gnl|CDD|274622	TIGR03513, GldL_gliding, gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile [Cellular processes, Chemotaxis and motility].	2.10158e-31
LR134384.1|VEH16600.1|3026582_3027197_-|Uncharacterised-protein	gnl|CDD|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	7.43109e-13
LR134384.1|VEH16614.1|3041301_3041565_-|CRISPR-associated-endoribonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.11551e-26
LR134384.1|VEH16604.1|3030617_3032069_-|Serine/threonine-protein-kinase-pkn1	gnl|CDD|274629	TIGR03525, lipoprotein_putative, gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.	5.12687e-96
LR134384.1|VEH16618.1|3045334_3046009_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	gnl|CDD|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	2.58953e-36

Protein sequences

>LR134384.1|VEH16609.1|3035413_3035584_-|Uncharacterised-protein
MLTTFISSKIFCDILGCHLRQGGLNFKGKVSYLLFSISLNIGGRLQISILFIAART
>LR134384.1|VEH16608.1|3035084_3035216_+|Uncharacterised-protein
MFRILSLSVFKLCESYFHEQCGHKQTVMVSMQIKLAFQTLAKY
>LR134384.1|VEH16607.1|3034744_3034966_-|Protein-of-uncharacterised-function-(DUF2795)
MYWTLELASKLEDAPWPATKDELIDYAVRSGAPLEVLENLQEIEDEGDVYESIEDIWPDYPSKDDFLWNDDEY
>LR134384.1|VEH16606.1|3033144_3034386_-|Uncharacterised-protein
MLIKRDRYLNALIGWKHTDLIKIVTGIRRCGKSFLLFTLFHQHLLQTGTDESHIIEIALDDISNESLRDPFRMMTYVKERIRSGEQYYLIIDEVQLLGRFVEVLNSFMHIPNVDVYVTGSNSHFLSKDVATEFRGRGIEIHVYPLSFAELYAAEGGDTSALWKRYCVYGGLPYLATLENNAKRAEYLTSLNKTLYLRDIVERNRIVNVEEFSELMCVMASGIGSPCNPNKIANTFKTVKKETLAPQTISKYLSYMEDAFIIERSTRYDVKGRRYIGTLSKYYFQDIGLRNALLNFRQTEETHIMENVIYNELRSRGYGVDVGVIDVRTATERRQLEVDFVADKGDRRYYIQSAFSLADDEKREQELASLKRIHDAFKKVIIVREDIASYHDEHGVLIMGLMDFLLKTNVDEIL
>LR134384.1|VEH16605.1|3032078_3032990_-|Bacteroidetes-specific-putative-membrane-protein
MVLMQVAMSAKAQYDAAFSHYFDMETSFNPAAAGKESRLNVNLAYALNFTGFEHNPRTMYAAADMPFYLMRSYHGVGLQFLNEKIGLFTHQKLALQYAHQLKLVGGKLRAGLQLALLNEGFDGSKVDPGTAGDPAFATTDINGNGLDLSAGLYYMRGVWYVGASVQHLNGPTIRMGDVKELKIDPTYYLTGGYNIKLRNPFLKIKPSVLLRTDGKAYRADVTGRLVYTHEGKMLYGGISYSPTNSVTALIGGTFHGIVLGYSYEAYTSGLSFGNGSHELFVGYQMDVNLAKKGRNKHQSVRIL
>LR134384.1|VEH16604.1|3030617_3032069_-|Serine/threonine-protein-kinase-pkn1
MKYKITIGICTLLASFTMSACFSGKTMSMAGRGGEVVGVGGGKAFSEPAPYGMVRVDRGFLHMGLDKQDSLWGKKMPVKDISVDGFWMDETEVTNSKYKQFVMWVRDSILRTRLADPAYAGDESYMITEDKNGDAITPRINWKKPLPRKPNEDEQRAIESLYVTNPVTGEKLLDWRQMNYRYEIYDYTAAALRRNRMNPAERSFNTDIIMDDDEPVMISKDTAFVDDEGRIVRQTIDRRRTGPWDFLNTYIVNVYPDTTCWVNDFKNSDNEMYLRNYFSNPAYNDYPVVGVTWEQANAFCAWRTEYLLKGLGAEARYVQRYRLPTEAEWEYAARGKNGNEFPWENKDMKNGNGCFYANFKPDRGNYTEDGNLITNKVGIYGANSNGLFDMAGNVAEWTSTAYTESGVDAMNDLNPQLSYNAAKEDPYALKKKSVRGGSWKDPESLIRSAWRSWEYQNHPRSYIGFRCVRSLANTTSSNKSKKK
>LR134384.1|VEH16603.1|3029865_3030621_-|gliding-motility-associated-protein-GldL
MTRYSKLNIVYRLQKWMDSVPGQTFLNYAYSWGAAIVVLGALFKLVHVEGADFWLILGMGTEVVVFFLSAFDRPFDKTTDGMELPTHVTEEYLARKDEDISPAAPVVTASVQAKPAPAPVVTAAETVAATAQVAQVSLPTADPEMAEAQQNYVDELKKLTEVLGKVGEQSTRLTRDSEEMENLNRTLTGITKVYEMQLKSASQQIGTIDQINEQSRLLARHIEQLNAIYARMIEAMTTNMRAAAPNQTPQP
>LR134384.1|VEH16602.1|3028309_3029866_-|gliding-motility-associated-protein-GldM
MAIKKRLISPRQKMINLMYIVLLAMLALNISTEVLDGFSIVEDSLNRTTGNATQENVALYRDFEMQMKQNPEKVKAWFEKATSVKLMSDSLYDFAQQLKVAIVKKADGKNGDVYNIENKDNLDAASEVMLAPLTGQGKSLFLRVNNYRERILKMVDDPHQKRIIADNLSTSVPRKARLQGKNWQEYMFENMPVAAAVTLLSKLQSDVRYAEGEVLHTLVSNIDVKDIRVNKLSAYVIPEKTVLYPGERFNANIVMAAVDTTLQPQIFVNGQRVMARNGQYGFTASGVGEHSISGYILMQNRKGDIIRRNFLQKYSVIPAPNSATVAADMMNVLYAGYPNPMSVSVPGVPANAVSVSMSGGSMTAKGNGHFVAVPAAVGKDVTIHVTARDKGQVRTLPPFVFHVRKLPDPTAYIALGTNRFKGGGMSKAALMGASGINAAIDDGLLDIPFRVLSFETVFFDNMGNAVPVASAGANFSDRQRETFRTLSRNRRFYISHVKAIGPDGITRTLTGALEVIVR
>LR134384.1|VEH16601.1|3027245_3028301_-|gliding-motility-associated-protein-GldN
MKRLYVVLLVGAFSLNGMAQSPLRKAEAAAKMKKSNANNLTMRAKLMYPTQQAMNEDVVWRRDVYRELNLNDNANGGLYYPVEPTDGRMNLFTLLFKLMMAGPNHGGINVYQYRLDGNEKFTDDAKVKPLTFLDDHHIFYERTDRGVHIDNSDIPSAEVKAYYLKESSYFDQATGTFHTKVLALCPVMERQDDFGEGTTKYPLFWVKYDDIASALAKQTVITSNLNNAAVMSLDDFFTMNVYKGKIYKTTNMQGQTLAQYCKTDSALSKEQRRIEREIASFEKNIWGDQARKDSLDSISRLSGKQLKTMRAANRRASKSTTPSVRSNRRASSGSSSSSGGQARVTVRRQRH
>LR134384.1|VEH16600.1|3026582_3027197_-|Uncharacterised-protein
MMLFVLAFVTLFATESKAQINFGVKGGLNVTRMSFDESLIKEDNRCGFFFGPSVKFTLPVIGLGMDVSALYDQREAKIEGGNENLKQQQIVVPVNARYGFGLGDAASIYFFAGPQFGFNVGSKDQTIVKDIADWKLKTSNFSVNLGFGLMLVKHLQISANYNIACGTTGEMSFSKAADKTWKTLAGKTKDGRANAWQVGLAYYF
>LR134384.1|VEH16610.1|3036316_3036853_-|Uncharacterised-protein
MGYSRGFGVQSPSAYSFIRYVLNEHYPYYAYAPLCEKHKAESHATKKKGRLYFRLANFAQATCWYDYLPATEAYADYVCAGCQSTVFKSIDATAIPQHFRIARLSMKGDYKAVYEALSAVATADSILILEGIYDNRDTKAFWKQVVERVEAVTTYDLYSCGIVLFDTSKFKHHYIVNF
>LR134384.1|VEH16611.1|3036806_3037064_-|Uncharacterised-protein
MKKIRIGLVLEKTEIQVLITDFPALFSCIYQEKLRILQRELRCPVQEGNAEGNRIHDKISYQTHLELVAPHGVFARFWGPVSVGI
>LR134384.1|VEH16612.1|3037137_3038775_+|Uncharacterised-protein
MKKLFVLLLLCYYNATSLHAQQCLSLPDVDAISFNGAGYNIDVYTKIGPDQYSRKSLGLKSKETILDKSSNMNPIKWNLNSHEDTLNRKDIDDSKEKFIEAKDLHTADFNSYIGKAFTVNDNGKWKREGRKSTYVLMFLRPELAIMQQLVYEDGKHVYNYSTLSSDIPDSVVTWRSTNTKQLIPLVLEIKGGKRIFLLYDRYIPYMIFPNPEGGIIYSSLDRLNPVEIEDAGEKYNGSKPYDFQYFNIKRHYGVQQTETGKYILLDQLGQNVLKEEYDSIKYDSRFIIAQRGNEFDVFNLYLDKLNIGKPKVVKEVADTQVGCIEVLNEKGAVYYDEMGQEIGSPDKRWIGLCGTVPHWEHTILKKKGCYQLQIYTNGPGTPIDEDERYWLSDLLPTDSVAFLDGQKSYHRTGNSWIIGEIDMHPEWIRVGRNGKFGIVAYEYKQPKNVKPKLITKRVYDWDEKTEIYPTVKVTGKIIFPIDNDSIIMQSDGLIYFYKDNKVGIFPRDKAPVYDEIKQTTRSFYHITKNGIPGWLDIKTDKEYWE
>LR134384.1|VEH16613.1|3041166_3041322_+|Uncharacterised-protein
MSMPNDIFSIEHRHSLLYKVFQEVKERYGHLRENEKDTYSYTSTTLQKVLC
>LR134384.1|VEH16614.1|3041301_3041565_-|CRISPR-associated-endoribonuclease-Cas2
MYVILIYDVAEKRVSKMLKLCRQYLCWIQNSVFEGELSEVKLRELQYKIGNLIDKKEDSVIIFSNKKGYHMSKDILGKERMSTENFL
>LR134384.1|VEH16615.1|3041569_3042586_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP
MKRSFYLFNPGLMERKDNTLKFTPISIDEQGNETKQPSRFIPIEDVAELYAFGSLKANSSLYNFLGQRDVPVHFFDYYENYTGSFMPRAGLLSGKALLAQVKTYQSSKKRVELARKFIQGAAWNMVMNLNYYNRRGKELEGQIAEMKEFAQTLPEAKTVEEVMGIEGNIRRIYYSAFDIVLDDFKFGSRTKQPPENEVNALVSFGNMMCYTETLRAIHQTQLNPTISFLHKPGERRYSLCLDISEIFKPIIVDRVIFKVLNKRALQKSHFDRKLNRCLLNDKGKKIFVAAMEERYNETFRHRSLGRNVSYRHLIKLECYKLLKDILGIEEYKPFKMYW
>LR134384.1|VEH16616.1|3042582_3043101_-|CRISPR-associated-protein-Cas4
MIVTGTHFNYYQLCRRKLWLFANGINMEHNSDLVYEGKLIHEDSYPQRSVKYEEVAIDGIKVDYYDARNKVIHEIKKSNKVAKAHEWQLKYYMYVFEQHGINGVKGILEYPELRKTSEVVLTDVDRENIALIRQDICNIIELDLCPPIVKKGLCKNCSYFEFCYSNEMEEDL
>LR134384.1|VEH16617.1|3043097_3045332_-|helicase-Cas3
MERSILLAKSNPKISLNEHIDDCLSICRQLSMVISNIPVEDKASFWNIVRKSLIMHDTGKGHVEFQKTLLGKASLWYHQRHELFSIYFIHNSNLSESEKTLVSFGVLGHHKSLGDLFDFVNRNYYNDEDWDEEGLSYADECDKLCYEEIKEILDRYELNLITKNVPCIKSILRLAKNKNIEGKANIENILFIGAIKHCDHMASAGIKHLYRLEKTDFAFLYKYPFFTHQLRDAEASCSVILNAPTGAGKTEAALVWLKNQLEHRGQGRVYYILPYTASINAMYKRLNSCIGDSSKKVGLLHGNLMQYLDLQMENHSIDTIKLQEQVEDFKSMLMPLKIVTPFQLLKHLFGIKGFEKGIFEWSGGYFIIDEIHAYEVKIFAQIIVLLSFAVQYLKVRVHIMTATLPTFMRCKIASVIGPYQEIIADKQLYLSFRRHRLFCLDGLLTDYLDNIQVDINQGKKVLVVCNTVDESQMVYKYLHASKKVLLHGRFCAEDRFKNEVKLKEDDVSLLVGTQAIEISLDVDFDLIYTAPAPLDALLQRFGRVNRKREKGICPCYVFKERNDADKYIYKNAGVIERTLEVLKQIEQDEGGIIQENKLQALIDVVYPCWSEEEQEDFSMTKTLFEDYVEKDLRPLEYSAEREEEFYKQFDDKKVIPAALVPEYQSRISNLQFVKAEGLLVSISKRRFANMLHEGNIEQKTFVYSKNEDKQIISIKQYVINSEYDERLGLVFSETEKQIGGDIFL
>LR134384.1|VEH16618.1|3045334_3046009_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)
MKVFRIKISAWTASFRYPNIISGYQPTLEVPPLSTILGLMNACAGRYLNHADMEIGYYFNYRSISNDLETIYQMKYDKGTAKKQVKSNVINRQFLFDNTLYIYIIDKDFVKYFQTPAFQILLGRSCDLATIEDIVICDLKEVNNASKIKGQIVPFNSNFLPGTIQALPKYFTNTIPRENVGTEAYSVIGCNSDDFSTDLSALRDSINGEDVDIYMHHLRLGKEE
>LR134384.1|VEH16619.1|3046008_3047064_-|CRISPR-associated-protein-Cas7/Cst2/DevR,-subtype-I-B/TNEAP
MERNLNVQGFVLLDVDVVALNNAGKDTISNNDNITRTKSINKDGQNYVYVSGQAWRYWWRETLQYVYGWTLSPITRGKSIVFTNTNPIDYPDDDVFGYMRAASETNEDEKGKKKTKNITVTRVSPLKNSALISVAATRPAMNWSSMSRQEGDSVPFVKQEYSAVMKGMFSLDINAISTFSDYNRSGYRNLSDDLKKKAIENGAVEIDDLFGKGKLLRLPQHVRKERIADTIAALKNISGGAMQTSNMGDVTPKLIILVTSSTGNHPFSHIVKNAGERNERVVLNMEGLRQVLIDYKDTFVGKLYIGRRSGFFDEYDEDIKALVSDFDDIVVYQSINIAVDEYIKEVKTLIE

Crispr_ID: LR134384_17

• CRISPR_ID: LR134384_17
• CRISPR_location: 3038831-3041089
• CRISPR_type: Unclear
• Repeat_type: I-A,II-B,III-A
• Spacer_info: 34 spacers
• Cas_protein_info: cas2,cas1,cas4,cas3,cas5,cas7,cas8b2

Consensus repeat of LR134384_17

Consensus_repeat	Method
ATTTCAATTCCAATAAGGTTCAATTATAAC	CRISPRCasFinder
ATTTCAATTCCAATAAGGTTCAATTATAAC	CRT
ATTTCAATTCCAATAAGGTTCAATTATAAC	PILER-CR

spacers of LR134384_17

>17.1|3038861|35|LR134384|CRISPRCasFinder,CRT
ATCGTTCGCGTAATCACTACTTGAACCAATCTGCG
>17.2|3038926|34|LR134384|CRISPRCasFinder,CRT
TACTTGCCAGCGTGTCATGCCGGGATACATCTTC
>17.3|3038990|34|LR134384|CRISPRCasFinder,CRT
CTATGCGTAATTCCTTCCCTTTCATCTCATTTGT
>17.4|3039054|36|LR134384|CRISPRCasFinder,CRT
TTTTTATTGTTGTTAGTATACGTTCAATCTCATCAC
>17.5|3039120|36|LR134384|CRISPRCasFinder,CRT
TTATAGGACGCTTCGCAAGCTCGCTAATTCGCTCAA
>17.6|3039186|34|LR134384|CRISPRCasFinder,CRT
TGATGGCATATCCGATAACCAACAGTACAAAGAA
>17.7|3039250|34|LR134384|CRISPRCasFinder,CRT
AAGGTTATGTTGAGCGTGAAGCGAATAATGACCC
>17.8|3039314|36|LR134384|CRISPRCasFinder,CRT
AGTATAATTGTCATCCCTTGCATTATATGTGCATGT
>17.9|3039380|38|LR134384|CRISPRCasFinder,CRT
AGTATTTTGCGTCTTATTTTGTGCCTTACAGTTATTTG
>17.10|3039448|37|LR134384|CRISPRCasFinder,CRT
ATGCTGACGGTCATACTTATGATAATGCCGAATTTGG
>17.11|3039515|38|LR134384|CRISPRCasFinder,CRT
CTTAAGTGTCTCCTTATTGATAAGGGCTGCTTTTTTCG
>17.12|3039583|35|LR134384|CRISPRCasFinder,CRT
TGTTTCTCCTTTATTCACAACCGCACAGGCAATGC
>17.13|3039648|36|LR134384|CRISPRCasFinder,CRT
AGAGGCAAGTGGTGCAGCAATCTATCCTGATACACA
>17.14|3039714|34|LR134384|CRISPRCasFinder,CRT
AAGAAACAATATCTTTCAGCACCGCTTCCATTTC
>17.15|3039778|40|LR134384|CRISPRCasFinder,CRT
TTTTATCGTAATGGATTAGTATTGACTAATTTACTGAATT
>17.16|3039848|40|LR134384|CRISPRCasFinder,CRT
TTGAGCCGGAGGGAGGTTACAACTGCATGAGCCTGTATCA
>17.17|3039918|35|LR134384|CRISPRCasFinder,CRT
TTTGATTTTCCGGCTCGGATGCAACAGCTTGTCTT
>17.18|3039983|35|LR134384|CRISPRCasFinder,CRT
ATTGAAGGAGGACAAGGCCGAATATATCAACGCCT
>17.19|3040048|36|LR134384|CRISPRCasFinder,CRT
TAGAGATTGTTCATCGACAGGGAAGCAGCAATTCCT
>17.20|3040114|34|LR134384|CRISPRCasFinder,CRT
CTGTGCTGCAGCCAAATTTGCAATGTACTTCTGC
>17.21|3040178|36|LR134384|CRISPRCasFinder,CRT
GCTGTTTGAGTGCCTTCTTCCTTTTTGAACTCTGTC
>17.22|3040244|36|LR134384|CRISPRCasFinder,CRT
GGTCAACAATTCCCTCTAAATTTGAAAAAATAGCAA
>17.23|3040310|36|LR134384|CRISPRCasFinder,CRT
TGTCAAGCGGTTTGCACTATGCTTCACTCCTTCTAC
>17.24|3040376|34|LR134384|CRISPRCasFinder,CRT
TATCATCGGCTATGTCGACGCGCGAAATACAAGT
>17.25|3040440|34|LR134384|CRISPRCasFinder,CRT
CTCAAATTGAAGCTAATAAGACTGCGTCTCCTGT
>17.26|3040504|34|LR134384|CRISPRCasFinder,CRT
AATTGTTTGAGAAGTTGAACCCTGTGCTTTCTAA
>17.27|3040568|34|LR134384|CRISPRCasFinder,CRT
CCCCTCTCATTATATGTGTATGTTAGATTGGTTC
>17.28|3040632|34|LR134384|CRISPRCasFinder,CRT
CGATAAAGGTGTTTCAAGGTTCTGTTCCGAACGT
>17.29|3040696|37|LR134384|CRISPRCasFinder,CRT
GATTAGTTGGAACTTTTAATGTTAATAATAAAGACAG
>17.30|3040763|35|LR134384|CRISPRCasFinder,CRT
CTGGAGGTATGTTGAATGCAAGCGCCCTGGAACAA
>17.31|3040828|34|LR134384|CRISPRCasFinder,CRT
ATCGGCATAGGCGGCCCGGGCTGCATCGTTTGCC
>17.32|3040892|34|LR134384|CRISPRCasFinder,CRT
TACGGTGCAGATAATCTGTACCCGCAGAACATCA
>17.33|3040956|37|LR134384|CRISPRCasFinder,CRT
GCAATGATTTGAATGAGCGATTGAAGAAAGTTGAGGG
>17.34|3041023|37|LR134384|CRISPRCasFinder,CRT
GCAGCTTTCACACTTGCAGCATTGAAACCTATTCCCA
>17.35|3038927|34|LR134384|PILER-CR
TACTTGCCAGCGTGTCATGCCGGGATACATCTTC
>17.36|3038991|34|LR134384|PILER-CR
CTATGCGTAATTCCTTCCCTTTCATCTCATTTGT
>17.37|3039055|36|LR134384|PILER-CR
TTTTTATTGTTGTTAGTATACGTTCAATCTCATCAC
>17.38|3039121|36|LR134384|PILER-CR
TTATAGGACGCTTCGCAAGCTCGCTAATTCGCTCAA
>17.39|3039187|34|LR134384|PILER-CR
TGATGGCATATCCGATAACCAACAGTACAAAGAA
>17.40|3039251|34|LR134384|PILER-CR
AAGGTTATGTTGAGCGTGAAGCGAATAATGACCC
>17.41|3039315|36|LR134384|PILER-CR
AGTATAATTGTCATCCCTTGCATTATATGTGCATGT
>17.42|3039381|38|LR134384|PILER-CR
AGTATTTTGCGTCTTATTTTGTGCCTTACAGTTATTTG
>17.43|3039449|37|LR134384|PILER-CR
ATGCTGACGGTCATACTTATGATAATGCCGAATTTGG
>17.44|3039516|38|LR134384|PILER-CR
CTTAAGTGTCTCCTTATTGATAAGGGCTGCTTTTTTCG
>17.45|3039584|35|LR134384|PILER-CR
TGTTTCTCCTTTATTCACAACCGCACAGGCAATGC
>17.46|3039649|36|LR134384|PILER-CR
AGAGGCAAGTGGTGCAGCAATCTATCCTGATACACA
>17.47|3039715|34|LR134384|PILER-CR
AAGAAACAATATCTTTCAGCACCGCTTCCATTTC
>17.48|3039779|40|LR134384|PILER-CR
TTTTATCGTAATGGATTAGTATTGACTAATTTACTGAATT
>17.49|3039849|40|LR134384|PILER-CR
TTGAGCCGGAGGGAGGTTACAACTGCATGAGCCTGTATCA
>17.50|3039919|35|LR134384|PILER-CR
TTTGATTTTCCGGCTCGGATGCAACAGCTTGTCTT
>17.51|3039984|35|LR134384|PILER-CR
ATTGAAGGAGGACAAGGCCGAATATATCAACGCCT
>17.52|3040049|36|LR134384|PILER-CR
TAGAGATTGTTCATCGACAGGGAAGCAGCAATTCCT
>17.53|3040115|34|LR134384|PILER-CR
CTGTGCTGCAGCCAAATTTGCAATGTACTTCTGC
>17.54|3040179|36|LR134384|PILER-CR
GCTGTTTGAGTGCCTTCTTCCTTTTTGAACTCTGTC
>17.55|3040245|36|LR134384|PILER-CR
GGTCAACAATTCCCTCTAAATTTGAAAAAATAGCAA
>17.56|3040311|36|LR134384|PILER-CR
TGTCAAGCGGTTTGCACTATGCTTCACTCCTTCTAC
>17.57|3040377|34|LR134384|PILER-CR
TATCATCGGCTATGTCGACGCGCGAAATACAAGT
>17.58|3040441|34|LR134384|PILER-CR
CTCAAATTGAAGCTAATAAGACTGCGTCTCCTGT
>17.59|3040505|34|LR134384|PILER-CR
AATTGTTTGAGAAGTTGAACCCTGTGCTTTCTAA
>17.60|3040569|34|LR134384|PILER-CR
CCCCTCTCATTATATGTGTATGTTAGATTGGTTC
>17.61|3040633|34|LR134384|PILER-CR
CGATAAAGGTGTTTCAAGGTTCTGTTCCGAACGT
>17.62|3040697|37|LR134384|PILER-CR
GATTAGTTGGAACTTTTAATGTTAATAATAAAGACAG
>17.63|3040764|35|LR134384|PILER-CR
CTGGAGGTATGTTGAATGCAAGCGCCCTGGAACAA
>17.64|3040829|34|LR134384|PILER-CR
ATCGGCATAGGCGGCCCGGGCTGCATCGTTTGCC
>17.65|3040893|34|LR134384|PILER-CR
TACGGTGCAGATAATCTGTACCCGCAGAACATCA
>17.66|3040957|37|LR134384|PILER-CR
GCAATGATTTGAATGAGCGATTGAAGAAAGTTGAGGG
>17.67|3041024|37|LR134384|PILER-CR
GCAGCTTTCACACTTGCAGCATTGAAACCTATTCCCA

CRISPR arrays and Neighbor proteins around LR134384_17

CRISPR arrays

The CRISPR arrays of LR134384_17

>merge|LR134384|17|3038831-3041089|CRISPRCasFinder,CRT,PILER-CR
GCCTAAAATCCGATGCGGTTCAATAATAACATCGTTCGCGTAATCACTACTTGAACCAATCTGCGGTTTCAATTCTAATAAGGTTCAATTATAACTACTTGCCAGCGTGTCATGCCGGGATACATCTTCATTTCAATTCCAATAAGATTCAATTATAACCTATGCGTAATTCCTTCCCTTTCATCTCATTTGTGTTTCAATTCCAATAAGGTTCAATTATAACTTTTTATTGTTGTTAGTATACGTTCAATCTCATCACATTTCAATTCCAATAAGGTTCAATTATAACTTATAGGACGCTTCGCAAGCTCGCTAATTCGCTCAAATTTCAATTCCAATAAGGTTCAATTATAACTGATGGCATATCCGATAACCAACAGTACAAAGAAATTTCAATTCCAATAAGGTTCAATTATAACAAGGTTATGTTGAGCGTGAAGCGAATAATGACCCATTTCAATTCCAATAAGGTTCAATTATAACAGTATAATTGTCATCCCTTGCATTATATGTGCATGTATTTCAATTCCAATAAGGTTCAATTATAACAGTATTTTGCGTCTTATTTTGTGCCTTACAGTTATTTGATTTCAATTCCAATAAGGTTCAATTATAACATGCTGACGGTCATACTTATGATAATGCCGAATTTGGATTTCAATTCCAATAAGGTTCAATTATAACCTTAAGTGTCTCCTTATTGATAAGGGCTGCTTTTTTCGATTTCAATTCCAATAAGGTTCAATTATAACTGTTTCTCCTTTATTCACAACCGCACAGGCAATGCATTTCAATTCCAATAAGGTTCAATTATAACAGAGGCAAGTGGTGCAGCAATCTATCCTGATACACAATTTCAATTCCAATAAGGTTCAATTATAACAAGAAACAATATCTTTCAGCACCGCTTCCATTTCATTTCAATTCCAATAAGGTTCAATTATAACTTTTATCGTAATGGATTAGTATTGACTAATTTACTGAATTATTTCAATTCCAATAAGGTTCAATTATAACTTGAGCCGGAGGGAGGTTACAACTGCATGAGCCTGTATCAATTTCAATTCCAATAAGGTTCAATTATAACTTTGATTTTCCGGCTCGGATGCAACAGCTTGTCTTATTTCAATTCCAATAAGGTTCAATTATAACATTGAAGGAGGACAAGGCCGAATATATCAACGCCTATTTCAATTCCAATAAGGTTCAATTATAACTAGAGATTGTTCATCGACAGGGAAGCAGCAATTCCTATTTCAATTCCAATAAGGTTCAATTATAACCTGTGCTGCAGCCAAATTTGCAATGTACTTCTGCATTTCAATTCCAATAAGGTTCAATTATAACGCTGTTTGAGTGCCTTCTTCCTTTTTGAACTCTGTCATTTCAATTCCAATAAGGTTCAATTATAACGGTCAACAATTCCCTCTAAATTTGAAAAAATAGCAAATTTCAATTCCAATAAGGTTCAATTATAACTGTCAAGCGGTTTGCACTATGCTTCACTCCTTCTACATTTCAATTCCAATAAGGTTCAATTATAACTATCATCGGCTATGTCGACGCGCGAAATACAAGTATTTCAATTCCAATAAGGTTCAATTATAACCTCAAATTGAAGCTAATAAGACTGCGTCTCCTGTATTTCAATTCCAATAAGGTTCAATTATAACAATTGTTTGAGAAGTTGAACCCTGTGCTTTCTAAATTTCAATTCCAATAAGGTTCAATTATAACCCCCTCTCATTATATGTGTATGTTAGATTGGTTCATTTCAATTCCAATAAGGTTCAATTATAACCGATAAAGGTGTTTCAAGGTTCTGTTCCGAACGTATTTCAATTCCAATAAGGTTCAATTATAACGATTAGTTGGAACTTTTAATGTTAATAATAAAGACAGATTTCAATTCCAATAAGGTTCAATTATAACCTGGAGGTATGTTGAATGCAAGCGCCCTGGAACAAATTTCAATTCCAATAAGGTTCAATTATAACATCGGCATAGGCGGCCCGGGCTGCATCGTTTGCCATTTCAATTCCAATAAGGTTCAATTATAACTACGGTGCAGATAATCTGTACCCGCAGAACATCAATTTCAATTCCAATAAGGTTCAATTATAACGCAATGATTTGAATGAGCGATTGAAGAAAGTTGAGGGATTTCAATTCCAATAAGGTTCAATTATAACGCAGCTTTCACACTTGCAGCATTGAAACCTATTCCCAATTTCAATTCCAATAAGGTTCAATTATAAC

>LR134384|17|16|3038831-3041089|CRISPRCasFinder
GCCTAAAATCCGATGCGGTTCAATAATAAC	ATCGTTCGCGTAATCACTACTTGAACCAATCTGCG
GTTTCAATTCTAATAAGGTTCAATTATAAC	TACTTGCCAGCGTGTCATGCCGGGATACATCTTC
ATTTCAATTCCAATAAGATTCAATTATAAC	CTATGCGTAATTCCTTCCCTTTCATCTCATTTGT
GTTTCAATTCCAATAAGGTTCAATTATAAC	TTTTTATTGTTGTTAGTATACGTTCAATCTCATCAC
ATTTCAATTCCAATAAGGTTCAATTATAAC	TTATAGGACGCTTCGCAAGCTCGCTAATTCGCTCAA
ATTTCAATTCCAATAAGGTTCAATTATAAC	TGATGGCATATCCGATAACCAACAGTACAAAGAA
ATTTCAATTCCAATAAGGTTCAATTATAAC	AAGGTTATGTTGAGCGTGAAGCGAATAATGACCC
ATTTCAATTCCAATAAGGTTCAATTATAAC	AGTATAATTGTCATCCCTTGCATTATATGTGCATGT
ATTTCAATTCCAATAAGGTTCAATTATAAC	AGTATTTTGCGTCTTATTTTGTGCCTTACAGTTATTTG
ATTTCAATTCCAATAAGGTTCAATTATAAC	ATGCTGACGGTCATACTTATGATAATGCCGAATTTGG
ATTTCAATTCCAATAAGGTTCAATTATAAC	CTTAAGTGTCTCCTTATTGATAAGGGCTGCTTTTTTCG
ATTTCAATTCCAATAAGGTTCAATTATAAC	TGTTTCTCCTTTATTCACAACCGCACAGGCAATGC
ATTTCAATTCCAATAAGGTTCAATTATAAC	AGAGGCAAGTGGTGCAGCAATCTATCCTGATACACA
ATTTCAATTCCAATAAGGTTCAATTATAAC	AAGAAACAATATCTTTCAGCACCGCTTCCATTTC
ATTTCAATTCCAATAAGGTTCAATTATAAC	TTTTATCGTAATGGATTAGTATTGACTAATTTACTGAATT
ATTTCAATTCCAATAAGGTTCAATTATAAC	TTGAGCCGGAGGGAGGTTACAACTGCATGAGCCTGTATCA
ATTTCAATTCCAATAAGGTTCAATTATAAC	TTTGATTTTCCGGCTCGGATGCAACAGCTTGTCTT
ATTTCAATTCCAATAAGGTTCAATTATAAC	ATTGAAGGAGGACAAGGCCGAATATATCAACGCCT
ATTTCAATTCCAATAAGGTTCAATTATAAC	TAGAGATTGTTCATCGACAGGGAAGCAGCAATTCCT
ATTTCAATTCCAATAAGGTTCAATTATAAC	CTGTGCTGCAGCCAAATTTGCAATGTACTTCTGC
ATTTCAATTCCAATAAGGTTCAATTATAAC	GCTGTTTGAGTGCCTTCTTCCTTTTTGAACTCTGTC
ATTTCAATTCCAATAAGGTTCAATTATAAC	GGTCAACAATTCCCTCTAAATTTGAAAAAATAGCAA
ATTTCAATTCCAATAAGGTTCAATTATAAC	TGTCAAGCGGTTTGCACTATGCTTCACTCCTTCTAC
ATTTCAATTCCAATAAGGTTCAATTATAAC	TATCATCGGCTATGTCGACGCGCGAAATACAAGT
ATTTCAATTCCAATAAGGTTCAATTATAAC	CTCAAATTGAAGCTAATAAGACTGCGTCTCCTGT
ATTTCAATTCCAATAAGGTTCAATTATAAC	AATTGTTTGAGAAGTTGAACCCTGTGCTTTCTAA
ATTTCAATTCCAATAAGGTTCAATTATAAC	CCCCTCTCATTATATGTGTATGTTAGATTGGTTC
ATTTCAATTCCAATAAGGTTCAATTATAAC	CGATAAAGGTGTTTCAAGGTTCTGTTCCGAACGT
ATTTCAATTCCAATAAGGTTCAATTATAAC	GATTAGTTGGAACTTTTAATGTTAATAATAAAGACAG
ATTTCAATTCCAATAAGGTTCAATTATAAC	CTGGAGGTATGTTGAATGCAAGCGCCCTGGAACAA
ATTTCAATTCCAATAAGGTTCAATTATAAC	ATCGGCATAGGCGGCCCGGGCTGCATCGTTTGCC
ATTTCAATTCCAATAAGGTTCAATTATAAC	TACGGTGCAGATAATCTGTACCCGCAGAACATCA
ATTTCAATTCCAATAAGGTTCAATTATAAC	GCAATGATTTGAATGAGCGATTGAAGAAAGTTGAGGG
ATTTCAATTCCAATAAGGTTCAATTATAAC	GCAGCTTTCACACTTGCAGCATTGAAACCTATTCCCA
ATTTCAATTCCAATAAGGTTCAATTATAAC

>LR134384|17|2|3038831-3041089|CRT
GCCTAAAATCCGATGCGGTTCAATAATAAC	ATCGTTCGCGTAATCACTACTTGAACCAATCTGCG
GTTTCAATTCTAATAAGGTTCAATTATAAC	TACTTGCCAGCGTGTCATGCCGGGATACATCTTC
ATTTCAATTCCAATAAGATTCAATTATAAC	CTATGCGTAATTCCTTCCCTTTCATCTCATTTGT
GTTTCAATTCCAATAAGGTTCAATTATAAC	TTTTTATTGTTGTTAGTATACGTTCAATCTCATCAC
ATTTCAATTCCAATAAGGTTCAATTATAAC	TTATAGGACGCTTCGCAAGCTCGCTAATTCGCTCAA
ATTTCAATTCCAATAAGGTTCAATTATAAC	TGATGGCATATCCGATAACCAACAGTACAAAGAA
ATTTCAATTCCAATAAGGTTCAATTATAAC	AAGGTTATGTTGAGCGTGAAGCGAATAATGACCC
ATTTCAATTCCAATAAGGTTCAATTATAAC	AGTATAATTGTCATCCCTTGCATTATATGTGCATGT
ATTTCAATTCCAATAAGGTTCAATTATAAC	AGTATTTTGCGTCTTATTTTGTGCCTTACAGTTATTTG
ATTTCAATTCCAATAAGGTTCAATTATAAC	ATGCTGACGGTCATACTTATGATAATGCCGAATTTGG
ATTTCAATTCCAATAAGGTTCAATTATAAC	CTTAAGTGTCTCCTTATTGATAAGGGCTGCTTTTTTCG
ATTTCAATTCCAATAAGGTTCAATTATAAC	TGTTTCTCCTTTATTCACAACCGCACAGGCAATGC
ATTTCAATTCCAATAAGGTTCAATTATAAC	AGAGGCAAGTGGTGCAGCAATCTATCCTGATACACA
ATTTCAATTCCAATAAGGTTCAATTATAAC	AAGAAACAATATCTTTCAGCACCGCTTCCATTTC
ATTTCAATTCCAATAAGGTTCAATTATAAC	TTTTATCGTAATGGATTAGTATTGACTAATTTACTGAATT
ATTTCAATTCCAATAAGGTTCAATTATAAC	TTGAGCCGGAGGGAGGTTACAACTGCATGAGCCTGTATCA
ATTTCAATTCCAATAAGGTTCAATTATAAC	TTTGATTTTCCGGCTCGGATGCAACAGCTTGTCTT
ATTTCAATTCCAATAAGGTTCAATTATAAC	ATTGAAGGAGGACAAGGCCGAATATATCAACGCCT
ATTTCAATTCCAATAAGGTTCAATTATAAC	TAGAGATTGTTCATCGACAGGGAAGCAGCAATTCCT
ATTTCAATTCCAATAAGGTTCAATTATAAC	CTGTGCTGCAGCCAAATTTGCAATGTACTTCTGC
ATTTCAATTCCAATAAGGTTCAATTATAAC	GCTGTTTGAGTGCCTTCTTCCTTTTTGAACTCTGTC
ATTTCAATTCCAATAAGGTTCAATTATAAC	GGTCAACAATTCCCTCTAAATTTGAAAAAATAGCAA
ATTTCAATTCCAATAAGGTTCAATTATAAC	TGTCAAGCGGTTTGCACTATGCTTCACTCCTTCTAC
ATTTCAATTCCAATAAGGTTCAATTATAAC	TATCATCGGCTATGTCGACGCGCGAAATACAAGT
ATTTCAATTCCAATAAGGTTCAATTATAAC	CTCAAATTGAAGCTAATAAGACTGCGTCTCCTGT
ATTTCAATTCCAATAAGGTTCAATTATAAC	AATTGTTTGAGAAGTTGAACCCTGTGCTTTCTAA
ATTTCAATTCCAATAAGGTTCAATTATAAC	CCCCTCTCATTATATGTGTATGTTAGATTGGTTC
ATTTCAATTCCAATAAGGTTCAATTATAAC	CGATAAAGGTGTTTCAAGGTTCTGTTCCGAACGT
ATTTCAATTCCAATAAGGTTCAATTATAAC	GATTAGTTGGAACTTTTAATGTTAATAATAAAGACAG
ATTTCAATTCCAATAAGGTTCAATTATAAC	CTGGAGGTATGTTGAATGCAAGCGCCCTGGAACAA
ATTTCAATTCCAATAAGGTTCAATTATAAC	ATCGGCATAGGCGGCCCGGGCTGCATCGTTTGCC
ATTTCAATTCCAATAAGGTTCAATTATAAC	TACGGTGCAGATAATCTGTACCCGCAGAACATCA
ATTTCAATTCCAATAAGGTTCAATTATAAC	GCAATGATTTGAATGAGCGATTGAAGAAAGTTGAGGG
ATTTCAATTCCAATAAGGTTCAATTATAAC	GCAGCTTTCACACTTGCAGCATTGAAACCTATTCCCA
ATTTCAATTCCAATAAGGTTCAATTATAAC

>LR134384|17|1|3038897-3041089|PILER-CR
TTTCAATTCTAATAAGGTTCAATTATAACT	ACTTGCCAGCGTGTCATGCCGGGATACATCTTCA
TTTCAATTCCAATAAGATTCAATTATAACC	TATGCGTAATTCCTTCCCTTTCATCTCATTTGTG
TTTCAATTCCAATAAGGTTCAATTATAACT	TTTTATTGTTGTTAGTATACGTTCAATCTCATCACA
TTTCAATTCCAATAAGGTTCAATTATAACT	TATAGGACGCTTCGCAAGCTCGCTAATTCGCTCAAA
TTTCAATTCCAATAAGGTTCAATTATAACT	GATGGCATATCCGATAACCAACAGTACAAAGAAA
TTTCAATTCCAATAAGGTTCAATTATAACA	AGGTTATGTTGAGCGTGAAGCGAATAATGACCCA
TTTCAATTCCAATAAGGTTCAATTATAACA	GTATAATTGTCATCCCTTGCATTATATGTGCATGTA
TTTCAATTCCAATAAGGTTCAATTATAACA	GTATTTTGCGTCTTATTTTGTGCCTTACAGTTATTTGA
TTTCAATTCCAATAAGGTTCAATTATAACA	TGCTGACGGTCATACTTATGATAATGCCGAATTTGGA
TTTCAATTCCAATAAGGTTCAATTATAACC	TTAAGTGTCTCCTTATTGATAAGGGCTGCTTTTTTCGA
TTTCAATTCCAATAAGGTTCAATTATAACT	GTTTCTCCTTTATTCACAACCGCACAGGCAATGCA
TTTCAATTCCAATAAGGTTCAATTATAACA	GAGGCAAGTGGTGCAGCAATCTATCCTGATACACAA
TTTCAATTCCAATAAGGTTCAATTATAACA	AGAAACAATATCTTTCAGCACCGCTTCCATTTCA
TTTCAATTCCAATAAGGTTCAATTATAACT	TTTATCGTAATGGATTAGTATTGACTAATTTACTGAATTA
TTTCAATTCCAATAAGGTTCAATTATAACT	TGAGCCGGAGGGAGGTTACAACTGCATGAGCCTGTATCAA
TTTCAATTCCAATAAGGTTCAATTATAACT	TTGATTTTCCGGCTCGGATGCAACAGCTTGTCTTA
TTTCAATTCCAATAAGGTTCAATTATAACA	TTGAAGGAGGACAAGGCCGAATATATCAACGCCTA
TTTCAATTCCAATAAGGTTCAATTATAACT	AGAGATTGTTCATCGACAGGGAAGCAGCAATTCCTA
TTTCAATTCCAATAAGGTTCAATTATAACC	TGTGCTGCAGCCAAATTTGCAATGTACTTCTGCA
TTTCAATTCCAATAAGGTTCAATTATAACG	CTGTTTGAGTGCCTTCTTCCTTTTTGAACTCTGTCA
TTTCAATTCCAATAAGGTTCAATTATAACG	GTCAACAATTCCCTCTAAATTTGAAAAAATAGCAAA
TTTCAATTCCAATAAGGTTCAATTATAACT	GTCAAGCGGTTTGCACTATGCTTCACTCCTTCTACA
TTTCAATTCCAATAAGGTTCAATTATAACT	ATCATCGGCTATGTCGACGCGCGAAATACAAGTA
TTTCAATTCCAATAAGGTTCAATTATAACC	TCAAATTGAAGCTAATAAGACTGCGTCTCCTGTA
TTTCAATTCCAATAAGGTTCAATTATAACA	ATTGTTTGAGAAGTTGAACCCTGTGCTTTCTAAA
TTTCAATTCCAATAAGGTTCAATTATAACC	CCCTCTCATTATATGTGTATGTTAGATTGGTTCA
TTTCAATTCCAATAAGGTTCAATTATAACC	GATAAAGGTGTTTCAAGGTTCTGTTCCGAACGTA
TTTCAATTCCAATAAGGTTCAATTATAACG	ATTAGTTGGAACTTTTAATGTTAATAATAAAGACAGA
TTTCAATTCCAATAAGGTTCAATTATAACC	TGGAGGTATGTTGAATGCAAGCGCCCTGGAACAAA
TTTCAATTCCAATAAGGTTCAATTATAACA	TCGGCATAGGCGGCCCGGGCTGCATCGTTTGCCA
TTTCAATTCCAATAAGGTTCAATTATAACT	ACGGTGCAGATAATCTGTACCCGCAGAACATCAA
TTTCAATTCCAATAAGGTTCAATTATAACG	CAATGATTTGAATGAGCGATTGAAGAAAGTTGAGGGA
TTTCAATTCCAATAAGGTTCAATTATAACG	CAGCTTTCACACTTGCAGCATTGAAACCTATTCCCAA
TTTCAATTCCAATAAGGTTCAATTATAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LR134384.1|VEH16608.1|3035084_3035216_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16620.1|3047075_3047768_-|Uncharacterised-protein	cas8b2	cls000029_cas8b2_CAS-I-B	gnl|CDD|187796
LR134384.1|VEH16619.1|3046008_3047064_-|CRISPR-associated-protein-Cas7/Cst2/DevR,-subtype-I-B/TNEAP	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|187818
LR134384.1|VEH16616.1|3042582_3043101_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
LR134384.1|VEH16621.1|3048239_3048452_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16615.1|3041569_3042586_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|274695
LR134384.1|VEH16612.1|3037137_3038775_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16607.1|3034744_3034966_-|Protein-of-uncharacterised-function-(DUF2795)	unknown	unknown	gnl|CDD|378655
LR134384.1|VEH16617.1|3043097_3045332_-|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|273707
LR134384.1|VEH16605.1|3032078_3032990_-|Bacteroidetes-specific-putative-membrane-protein	unknown	unknown	gnl|CDD|274625
LR134384.1|VEH16606.1|3033144_3034386_-|Uncharacterised-protein	unknown	unknown	gnl|CDD|224292
LR134384.1|VEH16622.1|3048864_3049452_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16610.1|3036316_3036853_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16611.1|3036806_3037064_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16614.1|3041301_3041565_-|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
LR134384.1|VEH16613.1|3041166_3041322_+|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16603.1|3029865_3030621_-|gliding-motility-associated-protein-GldL	unknown	unknown	gnl|CDD|274622
LR134384.1|VEH16604.1|3030617_3032069_-|Serine/threonine-protein-kinase-pkn1	unknown	unknown	gnl|CDD|274629
LR134384.1|VEH16609.1|3035413_3035584_-|Uncharacterised-protein	unknown	unknown	unknown
LR134384.1|VEH16618.1|3045334_3046009_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas5	COG1688_cas5_CAS-I	gnl|CDD|273860

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
LR134384.1|VEH16620.1|3047075_3047768_-|Uncharacterised-protein	cas8b2	cls000029_cas8b2_CAS-I-B	2.9e-15	50.5	10.2
LR134384.1|VEH16617.1|3043097_3045332_-|helicase-Cas3	cas3	COG1203_cas3_CAS-I	1.4e-77	256.3	4.3
LR134384.1|VEH16619.1|3046008_3047064_-|CRISPR-associated-protein-Cas7/Cst2/DevR,-subtype-I-B/TNEAP	cas7	cd09687_cas7_CAS-I-B	1e-54	180.5	0.6
LR134384.1|VEH16616.1|3042582_3043101_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	9.1e-52	170.2	2.8
LR134384.1|VEH16615.1|3041569_3042586_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	cas1	cd09722_cas1_CAS-I-B	3.9e-131	431.7	1.3
LR134384.1|VEH16614.1|3041301_3041565_-|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.2e-26	87.5	1.1
LR134384.1|VEH16618.1|3045334_3046009_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas5	COG1688_cas5_CAS-I	2.5e-16	54.7	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LR134384.1|VEH16620.1|3047075_3047768_-|Uncharacterised-protein	gnl|CDD|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	0.000256785
LR134384.1|VEH16619.1|3046008_3047064_-|CRISPR-associated-protein-Cas7/Cst2/DevR,-subtype-I-B/TNEAP	gnl|CDD|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	6.40398e-51
LR134384.1|VEH16616.1|3042582_3043101_-|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.67231e-61
LR134384.1|VEH16615.1|3041569_3042586_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	gnl|CDD|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	7.73301e-161
LR134384.1|VEH16607.1|3034744_3034966_-|Protein-of-uncharacterised-function-(DUF2795)	gnl|CDD|378655	pfam11387, DUF2795, Protein of unknown function (DUF2795). This family of proteins has no known function.	5.53804e-13
LR134384.1|VEH16617.1|3043097_3045332_-|helicase-Cas3	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	9.73023e-63
LR134384.1|VEH16605.1|3032078_3032990_-|Bacteroidetes-specific-putative-membrane-protein	gnl|CDD|274625	TIGR03519, bacteroidetes-specific_membrane_protein, type IX secretion system membrane protein, PorP/SprF family. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that have type IX secretion systems (T9SS) and exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.	3.34043e-66
LR134384.1|VEH16606.1|3033144_3034386_-|Uncharacterised-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	6.63392e-65
LR134384.1|VEH16603.1|3029865_3030621_-|gliding-motility-associated-protein-GldL	gnl|CDD|274622	TIGR03513, GldL_gliding, gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile [Cellular processes, Chemotaxis and motility].	2.10158e-31
LR134384.1|VEH16614.1|3041301_3041565_-|CRISPR-associated-endoribonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.11551e-26
LR134384.1|VEH16604.1|3030617_3032069_-|Serine/threonine-protein-kinase-pkn1	gnl|CDD|274629	TIGR03525, lipoprotein_putative, gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.	5.12687e-96
LR134384.1|VEH16618.1|3045334_3046009_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	gnl|CDD|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	2.58953e-36

Protein sequences

>LR134384.1|VEH16612.1|3037137_3038775_+|Uncharacterised-protein
MKKLFVLLLLCYYNATSLHAQQCLSLPDVDAISFNGAGYNIDVYTKIGPDQYSRKSLGLKSKETILDKSSNMNPIKWNLNSHEDTLNRKDIDDSKEKFIEAKDLHTADFNSYIGKAFTVNDNGKWKREGRKSTYVLMFLRPELAIMQQLVYEDGKHVYNYSTLSSDIPDSVVTWRSTNTKQLIPLVLEIKGGKRIFLLYDRYIPYMIFPNPEGGIIYSSLDRLNPVEIEDAGEKYNGSKPYDFQYFNIKRHYGVQQTETGKYILLDQLGQNVLKEEYDSIKYDSRFIIAQRGNEFDVFNLYLDKLNIGKPKVVKEVADTQVGCIEVLNEKGAVYYDEMGQEIGSPDKRWIGLCGTVPHWEHTILKKKGCYQLQIYTNGPGTPIDEDERYWLSDLLPTDSVAFLDGQKSYHRTGNSWIIGEIDMHPEWIRVGRNGKFGIVAYEYKQPKNVKPKLITKRVYDWDEKTEIYPTVKVTGKIIFPIDNDSIIMQSDGLIYFYKDNKVGIFPRDKAPVYDEIKQTTRSFYHITKNGIPGWLDIKTDKEYWE
>LR134384.1|VEH16611.1|3036806_3037064_-|Uncharacterised-protein
MKKIRIGLVLEKTEIQVLITDFPALFSCIYQEKLRILQRELRCPVQEGNAEGNRIHDKISYQTHLELVAPHGVFARFWGPVSVGI
>LR134384.1|VEH16610.1|3036316_3036853_-|Uncharacterised-protein
MGYSRGFGVQSPSAYSFIRYVLNEHYPYYAYAPLCEKHKAESHATKKKGRLYFRLANFAQATCWYDYLPATEAYADYVCAGCQSTVFKSIDATAIPQHFRIARLSMKGDYKAVYEALSAVATADSILILEGIYDNRDTKAFWKQVVERVEAVTTYDLYSCGIVLFDTSKFKHHYIVNF
>LR134384.1|VEH16609.1|3035413_3035584_-|Uncharacterised-protein
MLTTFISSKIFCDILGCHLRQGGLNFKGKVSYLLFSISLNIGGRLQISILFIAART
>LR134384.1|VEH16608.1|3035084_3035216_+|Uncharacterised-protein
MFRILSLSVFKLCESYFHEQCGHKQTVMVSMQIKLAFQTLAKY
>LR134384.1|VEH16607.1|3034744_3034966_-|Protein-of-uncharacterised-function-(DUF2795)
MYWTLELASKLEDAPWPATKDELIDYAVRSGAPLEVLENLQEIEDEGDVYESIEDIWPDYPSKDDFLWNDDEY
>LR134384.1|VEH16606.1|3033144_3034386_-|Uncharacterised-protein
MLIKRDRYLNALIGWKHTDLIKIVTGIRRCGKSFLLFTLFHQHLLQTGTDESHIIEIALDDISNESLRDPFRMMTYVKERIRSGEQYYLIIDEVQLLGRFVEVLNSFMHIPNVDVYVTGSNSHFLSKDVATEFRGRGIEIHVYPLSFAELYAAEGGDTSALWKRYCVYGGLPYLATLENNAKRAEYLTSLNKTLYLRDIVERNRIVNVEEFSELMCVMASGIGSPCNPNKIANTFKTVKKETLAPQTISKYLSYMEDAFIIERSTRYDVKGRRYIGTLSKYYFQDIGLRNALLNFRQTEETHIMENVIYNELRSRGYGVDVGVIDVRTATERRQLEVDFVADKGDRRYYIQSAFSLADDEKREQELASLKRIHDAFKKVIIVREDIASYHDEHGVLIMGLMDFLLKTNVDEIL
>LR134384.1|VEH16605.1|3032078_3032990_-|Bacteroidetes-specific-putative-membrane-protein
MVLMQVAMSAKAQYDAAFSHYFDMETSFNPAAAGKESRLNVNLAYALNFTGFEHNPRTMYAAADMPFYLMRSYHGVGLQFLNEKIGLFTHQKLALQYAHQLKLVGGKLRAGLQLALLNEGFDGSKVDPGTAGDPAFATTDINGNGLDLSAGLYYMRGVWYVGASVQHLNGPTIRMGDVKELKIDPTYYLTGGYNIKLRNPFLKIKPSVLLRTDGKAYRADVTGRLVYTHEGKMLYGGISYSPTNSVTALIGGTFHGIVLGYSYEAYTSGLSFGNGSHELFVGYQMDVNLAKKGRNKHQSVRIL
>LR134384.1|VEH16604.1|3030617_3032069_-|Serine/threonine-protein-kinase-pkn1
MKYKITIGICTLLASFTMSACFSGKTMSMAGRGGEVVGVGGGKAFSEPAPYGMVRVDRGFLHMGLDKQDSLWGKKMPVKDISVDGFWMDETEVTNSKYKQFVMWVRDSILRTRLADPAYAGDESYMITEDKNGDAITPRINWKKPLPRKPNEDEQRAIESLYVTNPVTGEKLLDWRQMNYRYEIYDYTAAALRRNRMNPAERSFNTDIIMDDDEPVMISKDTAFVDDEGRIVRQTIDRRRTGPWDFLNTYIVNVYPDTTCWVNDFKNSDNEMYLRNYFSNPAYNDYPVVGVTWEQANAFCAWRTEYLLKGLGAEARYVQRYRLPTEAEWEYAARGKNGNEFPWENKDMKNGNGCFYANFKPDRGNYTEDGNLITNKVGIYGANSNGLFDMAGNVAEWTSTAYTESGVDAMNDLNPQLSYNAAKEDPYALKKKSVRGGSWKDPESLIRSAWRSWEYQNHPRSYIGFRCVRSLANTTSSNKSKKK
>LR134384.1|VEH16603.1|3029865_3030621_-|gliding-motility-associated-protein-GldL
MTRYSKLNIVYRLQKWMDSVPGQTFLNYAYSWGAAIVVLGALFKLVHVEGADFWLILGMGTEVVVFFLSAFDRPFDKTTDGMELPTHVTEEYLARKDEDISPAAPVVTASVQAKPAPAPVVTAAETVAATAQVAQVSLPTADPEMAEAQQNYVDELKKLTEVLGKVGEQSTRLTRDSEEMENLNRTLTGITKVYEMQLKSASQQIGTIDQINEQSRLLARHIEQLNAIYARMIEAMTTNMRAAAPNQTPQP
>LR134384.1|VEH16613.1|3041166_3041322_+|Uncharacterised-protein
MSMPNDIFSIEHRHSLLYKVFQEVKERYGHLRENEKDTYSYTSTTLQKVLC
>LR134384.1|VEH16614.1|3041301_3041565_-|CRISPR-associated-endoribonuclease-Cas2
MYVILIYDVAEKRVSKMLKLCRQYLCWIQNSVFEGELSEVKLRELQYKIGNLIDKKEDSVIIFSNKKGYHMSKDILGKERMSTENFL
>LR134384.1|VEH16615.1|3041569_3042586_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP
MKRSFYLFNPGLMERKDNTLKFTPISIDEQGNETKQPSRFIPIEDVAELYAFGSLKANSSLYNFLGQRDVPVHFFDYYENYTGSFMPRAGLLSGKALLAQVKTYQSSKKRVELARKFIQGAAWNMVMNLNYYNRRGKELEGQIAEMKEFAQTLPEAKTVEEVMGIEGNIRRIYYSAFDIVLDDFKFGSRTKQPPENEVNALVSFGNMMCYTETLRAIHQTQLNPTISFLHKPGERRYSLCLDISEIFKPIIVDRVIFKVLNKRALQKSHFDRKLNRCLLNDKGKKIFVAAMEERYNETFRHRSLGRNVSYRHLIKLECYKLLKDILGIEEYKPFKMYW
>LR134384.1|VEH16616.1|3042582_3043101_-|CRISPR-associated-protein-Cas4
MIVTGTHFNYYQLCRRKLWLFANGINMEHNSDLVYEGKLIHEDSYPQRSVKYEEVAIDGIKVDYYDARNKVIHEIKKSNKVAKAHEWQLKYYMYVFEQHGINGVKGILEYPELRKTSEVVLTDVDRENIALIRQDICNIIELDLCPPIVKKGLCKNCSYFEFCYSNEMEEDL
>LR134384.1|VEH16617.1|3043097_3045332_-|helicase-Cas3
MERSILLAKSNPKISLNEHIDDCLSICRQLSMVISNIPVEDKASFWNIVRKSLIMHDTGKGHVEFQKTLLGKASLWYHQRHELFSIYFIHNSNLSESEKTLVSFGVLGHHKSLGDLFDFVNRNYYNDEDWDEEGLSYADECDKLCYEEIKEILDRYELNLITKNVPCIKSILRLAKNKNIEGKANIENILFIGAIKHCDHMASAGIKHLYRLEKTDFAFLYKYPFFTHQLRDAEASCSVILNAPTGAGKTEAALVWLKNQLEHRGQGRVYYILPYTASINAMYKRLNSCIGDSSKKVGLLHGNLMQYLDLQMENHSIDTIKLQEQVEDFKSMLMPLKIVTPFQLLKHLFGIKGFEKGIFEWSGGYFIIDEIHAYEVKIFAQIIVLLSFAVQYLKVRVHIMTATLPTFMRCKIASVIGPYQEIIADKQLYLSFRRHRLFCLDGLLTDYLDNIQVDINQGKKVLVVCNTVDESQMVYKYLHASKKVLLHGRFCAEDRFKNEVKLKEDDVSLLVGTQAIEISLDVDFDLIYTAPAPLDALLQRFGRVNRKREKGICPCYVFKERNDADKYIYKNAGVIERTLEVLKQIEQDEGGIIQENKLQALIDVVYPCWSEEEQEDFSMTKTLFEDYVEKDLRPLEYSAEREEEFYKQFDDKKVIPAALVPEYQSRISNLQFVKAEGLLVSISKRRFANMLHEGNIEQKTFVYSKNEDKQIISIKQYVINSEYDERLGLVFSETEKQIGGDIFL
>LR134384.1|VEH16618.1|3045334_3046009_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)
MKVFRIKISAWTASFRYPNIISGYQPTLEVPPLSTILGLMNACAGRYLNHADMEIGYYFNYRSISNDLETIYQMKYDKGTAKKQVKSNVINRQFLFDNTLYIYIIDKDFVKYFQTPAFQILLGRSCDLATIEDIVICDLKEVNNASKIKGQIVPFNSNFLPGTIQALPKYFTNTIPRENVGTEAYSVIGCNSDDFSTDLSALRDSINGEDVDIYMHHLRLGKEE
>LR134384.1|VEH16619.1|3046008_3047064_-|CRISPR-associated-protein-Cas7/Cst2/DevR,-subtype-I-B/TNEAP
MERNLNVQGFVLLDVDVVALNNAGKDTISNNDNITRTKSINKDGQNYVYVSGQAWRYWWRETLQYVYGWTLSPITRGKSIVFTNTNPIDYPDDDVFGYMRAASETNEDEKGKKKTKNITVTRVSPLKNSALISVAATRPAMNWSSMSRQEGDSVPFVKQEYSAVMKGMFSLDINAISTFSDYNRSGYRNLSDDLKKKAIENGAVEIDDLFGKGKLLRLPQHVRKERIADTIAALKNISGGAMQTSNMGDVTPKLIILVTSSTGNHPFSHIVKNAGERNERVVLNMEGLRQVLIDYKDTFVGKLYIGRRSGFFDEYDEDIKALVSDFDDIVVYQSINIAVDEYIKEVKTLIE
>LR134384.1|VEH16620.1|3047075_3047768_-|Uncharacterised-protein
MYHFTNFGTSPSLSIYNLPFQTLQFYSLMQKVQYKDFWHNFVRRYYYKKGIKYNKDVDSYEVQNKKQKTIVSPEEYQYWSNVIYDYLLNNKSIIPYLLSYSRIALVSFKITRIYAIKIRHMKKESIDKIEQIADFITACNDCLIIEKAIKKLDSVTNSYLLRRFVLKDIIAKNYEEGNKDAIVTVNEYADYLFPDLDSWMEMRDVLLIAIYERLHQLHKDMNNDNEVSNN
>LR134384.1|VEH16621.1|3048239_3048452_+|Uncharacterised-protein
MTKVIHVQLMQGRKNYYFGSIPAIYSVLTAEEIGIKQCSLERVGLSKGGVVLNKKACIRAGKLIRSKTTK
>LR134384.1|VEH16622.1|3048864_3049452_+|Uncharacterised-protein
MRAAHKEGNMEQTFKISDEQWERLNDATFRIVLERSDKLVASSLEQLRKSTDRAYTLFGFLLTVFSGITAYLIRCVDITVLLPCVVLWLGCGIATALMFSKAIWVHPFIHQGNQPRYLITKELIDAYKSNGAYQHTLLVSAIEENQYCYDYNSNILAKRAKVIKCVMKVIKATFLMVAVITILIKLAEYLNYPLN

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134384_9	9.1|790904|36|LR134384|CRISPRCasFinder	790904-790939	36	LR134384.1	496966-497001	0	1.0
LR134384_17	17.4|3039054|36|LR134384|CRISPRCasFinder,CRT	3039054-3039089	36	LR134384.1	8212-8247	0	1.0
LR134384_17	17.4|3039054|36|LR134384|CRISPRCasFinder,CRT	3039054-3039089	36	LR134384.1	3059521-3059556	0	1.0
LR134384_17	17.30|3040763|35|LR134384|CRISPRCasFinder,CRT	3040763-3040797	35	LR134384.1	3079630-3079664	0	1.0
LR134384_17	17.30|3040763|35|LR134384|CRISPRCasFinder,CRT	3040763-3040797	35	LR134384.1	3163082-3163116	0	1.0
LR134384_17	17.31|3040828|34|LR134384|CRISPRCasFinder,CRT	3040828-3040861	34	LR134384.1	123962-123995	0	1.0
LR134384_17	17.31|3040828|34|LR134384|CRISPRCasFinder,CRT	3040828-3040861	34	LR134384.1	3076724-3076757	0	1.0
LR134384_17	17.31|3040828|34|LR134384|CRISPRCasFinder,CRT	3040828-3040861	34	LR134384.1	3165989-3166022	0	1.0
LR134384_17	17.34|3041023|37|LR134384|CRISPRCasFinder,CRT	3041023-3041059	37	LR134384.1	3071213-3071249	0	1.0
LR134384_17	17.37|3039055|36|LR134384|PILER-CR	3039055-3039090	36	LR134384.1	8212-8247	0	1.0
LR134384_17	17.37|3039055|36|LR134384|PILER-CR	3039055-3039090	36	LR134384.1	3059521-3059556	0	1.0
LR134384_17	17.63|3040764|35|LR134384|PILER-CR	3040764-3040798	35	LR134384.1	3079630-3079664	0	1.0
LR134384_17	17.63|3040764|35|LR134384|PILER-CR	3040764-3040798	35	LR134384.1	3163082-3163116	0	1.0
LR134384_17	17.64|3040829|34|LR134384|PILER-CR	3040829-3040862	34	LR134384.1	123962-123995	0	1.0
LR134384_17	17.64|3040829|34|LR134384|PILER-CR	3040829-3040862	34	LR134384.1	3076724-3076757	0	1.0
LR134384_17	17.64|3040829|34|LR134384|PILER-CR	3040829-3040862	34	LR134384.1	3165989-3166022	0	1.0
LR134384_17	17.67|3041024|37|LR134384|PILER-CR	3041024-3041060	37	LR134384.1	3071213-3071249	0	1.0
LR134384_10	10.1|1541838|34|LR134384|CRISPRCasFinder	1541838-1541871	34	LR134384.1	1485414-1485447	1	0.971
LR134384_11	11.2|1846692|18|LR134384|CRT	1846692-1846709	18	LR134384.1	1505822-1505839	1	0.944
LR134384_17	17.14|3039714|34|LR134384|CRISPRCasFinder,CRT	3039714-3039747	34	LR134384.1	3081391-3081424	1	0.971
LR134384_17	17.14|3039714|34|LR134384|CRISPRCasFinder,CRT	3039714-3039747	34	LR134384.1	3161322-3161355	1	0.971
LR134384_17	17.47|3039715|34|LR134384|PILER-CR	3039715-3039748	34	LR134384.1	3081391-3081424	1	0.971
LR134384_17	17.47|3039715|34|LR134384|PILER-CR	3039715-3039748	34	LR134384.1	3161322-3161355	1	0.971
LR134384_6	6.1|643827|36|LR134384|CRISPRCasFinder	643827-643862	36	LR134384.1	669454-669489	2	0.944
LR134384_11	11.2|1846692|18|LR134384|CRT	1846692-1846709	18	LR134384.1	100556-100573	2	0.889
LR134384_11	11.2|1846692|18|LR134384|CRT	1846692-1846709	18	LR134384.1	1505863-1505880	2	0.889
LR134384_11	11.2|1846692|18|LR134384|CRT	1846692-1846709	18	LR134384.1	1589867-1589884	2	0.889
LR134384_11	11.3|1846733|18|LR134384|CRT	1846733-1846750	18	LR134384.1	1476449-1476466	2	0.889
LR134384_17	17.14|3039714|34|LR134384|CRISPRCasFinder,CRT	3039714-3039747	34	LR134384.1	119195-119228	2	0.941
LR134384_17	17.47|3039715|34|LR134384|PILER-CR	3039715-3039748	34	LR134384.1	119195-119228	2	0.941

1. spacer 9.1|790904|36|LR134384|CRISPRCasFinder matches to position: 496966-497001, mismatch: 0, identity: 1.0

agatgtcagctttcttggagtatgctcataagcagg	CRISPR spacer
agatgtcagctttcttggagtatgctcataagcagg	Protospacer
************************************

2. spacer 17.4|3039054|36|LR134384|CRISPRCasFinder,CRT matches to position: 8212-8247, mismatch: 0, identity: 1.0

tttttattgttgttagtatacgttcaatctcatcac	CRISPR spacer
tttttattgttgttagtatacgttcaatctcatcac	Protospacer
************************************

3. spacer 17.4|3039054|36|LR134384|CRISPRCasFinder,CRT matches to position: 3059521-3059556, mismatch: 0, identity: 1.0

tttttattgttgttagtatacgttcaatctcatcac	CRISPR spacer
tttttattgttgttagtatacgttcaatctcatcac	Protospacer
************************************

4. spacer 17.30|3040763|35|LR134384|CRISPRCasFinder,CRT matches to position: 3079630-3079664, mismatch: 0, identity: 1.0

ctggaggtatgttgaatgcaagcgccctggaacaa	CRISPR spacer
ctggaggtatgttgaatgcaagcgccctggaacaa	Protospacer
***********************************

5. spacer 17.30|3040763|35|LR134384|CRISPRCasFinder,CRT matches to position: 3163082-3163116, mismatch: 0, identity: 1.0

ctggaggtatgttgaatgcaagcgccctggaacaa	CRISPR spacer
ctggaggtatgttgaatgcaagcgccctggaacaa	Protospacer
***********************************

6. spacer 17.31|3040828|34|LR134384|CRISPRCasFinder,CRT matches to position: 123962-123995, mismatch: 0, identity: 1.0

atcggcataggcggcccgggctgcatcgtttgcc	CRISPR spacer
atcggcataggcggcccgggctgcatcgtttgcc	Protospacer
**********************************

7. spacer 17.31|3040828|34|LR134384|CRISPRCasFinder,CRT matches to position: 3076724-3076757, mismatch: 0, identity: 1.0

atcggcataggcggcccgggctgcatcgtttgcc	CRISPR spacer
atcggcataggcggcccgggctgcatcgtttgcc	Protospacer
**********************************

8. spacer 17.31|3040828|34|LR134384|CRISPRCasFinder,CRT matches to position: 3165989-3166022, mismatch: 0, identity: 1.0

atcggcataggcggcccgggctgcatcgtttgcc	CRISPR spacer
atcggcataggcggcccgggctgcatcgtttgcc	Protospacer
**********************************

9. spacer 17.34|3041023|37|LR134384|CRISPRCasFinder,CRT matches to position: 3071213-3071249, mismatch: 0, identity: 1.0

gcagctttcacacttgcagcattgaaacctattccca	CRISPR spacer
gcagctttcacacttgcagcattgaaacctattccca	Protospacer
*************************************

10. spacer 17.37|3039055|36|LR134384|PILER-CR matches to position: 8212-8247, mismatch: 0, identity: 1.0

tttttattgttgttagtatacgttcaatctcatcac	CRISPR spacer
tttttattgttgttagtatacgttcaatctcatcac	Protospacer
************************************

11. spacer 17.37|3039055|36|LR134384|PILER-CR matches to position: 3059521-3059556, mismatch: 0, identity: 1.0

tttttattgttgttagtatacgttcaatctcatcac	CRISPR spacer
tttttattgttgttagtatacgttcaatctcatcac	Protospacer
************************************

12. spacer 17.63|3040764|35|LR134384|PILER-CR matches to position: 3079630-3079664, mismatch: 0, identity: 1.0

ctggaggtatgttgaatgcaagcgccctggaacaa	CRISPR spacer
ctggaggtatgttgaatgcaagcgccctggaacaa	Protospacer
***********************************

13. spacer 17.63|3040764|35|LR134384|PILER-CR matches to position: 3163082-3163116, mismatch: 0, identity: 1.0

ctggaggtatgttgaatgcaagcgccctggaacaa	CRISPR spacer
ctggaggtatgttgaatgcaagcgccctggaacaa	Protospacer
***********************************

14. spacer 17.64|3040829|34|LR134384|PILER-CR matches to position: 123962-123995, mismatch: 0, identity: 1.0

atcggcataggcggcccgggctgcatcgtttgcc	CRISPR spacer
atcggcataggcggcccgggctgcatcgtttgcc	Protospacer
**********************************

15. spacer 17.64|3040829|34|LR134384|PILER-CR matches to position: 3076724-3076757, mismatch: 0, identity: 1.0

atcggcataggcggcccgggctgcatcgtttgcc	CRISPR spacer
atcggcataggcggcccgggctgcatcgtttgcc	Protospacer
**********************************

16. spacer 17.64|3040829|34|LR134384|PILER-CR matches to position: 3165989-3166022, mismatch: 0, identity: 1.0

atcggcataggcggcccgggctgcatcgtttgcc	CRISPR spacer
atcggcataggcggcccgggctgcatcgtttgcc	Protospacer
**********************************

17. spacer 17.67|3041024|37|LR134384|PILER-CR matches to position: 3071213-3071249, mismatch: 0, identity: 1.0

gcagctttcacacttgcagcattgaaacctattccca	CRISPR spacer
gcagctttcacacttgcagcattgaaacctattccca	Protospacer
*************************************

18. spacer 10.1|1541838|34|LR134384|CRISPRCasFinder matches to position: 1485414-1485447, mismatch: 1, identity: 0.971

aaaacaggcaagagcttcgaggcttctctctcct	CRISPR spacer
aaaacgggcaagagcttcgaggcttctctctcct	Protospacer
*****.****************************

19. spacer 11.2|1846692|18|LR134384|CRT matches to position: 1505822-1505839, mismatch: 1, identity: 0.944

aatgattttcagcgtttt	CRISPR spacer
aatgattttcagcatttt	Protospacer
*************.****

20. spacer 17.14|3039714|34|LR134384|CRISPRCasFinder,CRT matches to position: 3081391-3081424, mismatch: 1, identity: 0.971

aagaaacaatatctttcagcaccgcttccatttc	CRISPR spacer
aagaaacaatatctttcagcgccgcttccatttc	Protospacer
********************.*************

21. spacer 17.14|3039714|34|LR134384|CRISPRCasFinder,CRT matches to position: 3161322-3161355, mismatch: 1, identity: 0.971

aagaaacaatatctttcagcaccgcttccatttc	CRISPR spacer
aagaaacaatatctttcagcgccgcttccatttc	Protospacer
********************.*************

22. spacer 17.47|3039715|34|LR134384|PILER-CR matches to position: 3081391-3081424, mismatch: 1, identity: 0.971

aagaaacaatatctttcagcaccgcttccatttc	CRISPR spacer
aagaaacaatatctttcagcgccgcttccatttc	Protospacer
********************.*************

23. spacer 17.47|3039715|34|LR134384|PILER-CR matches to position: 3161322-3161355, mismatch: 1, identity: 0.971

aagaaacaatatctttcagcaccgcttccatttc	CRISPR spacer
aagaaacaatatctttcagcgccgcttccatttc	Protospacer
********************.*************

24. spacer 6.1|643827|36|LR134384|CRISPRCasFinder matches to position: 669454-669489, mismatch: 2, identity: 0.944

attgcaggctcatatctcgcctgttatcttgccaca	CRISPR spacer
attacaggctcatatcgcgcctgttatcttgccaca	Protospacer
***.************ *******************

25. spacer 11.2|1846692|18|LR134384|CRT matches to position: 100556-100573, mismatch: 2, identity: 0.889

aatgattttcagcgtttt	CRISPR spacer
aatgattttcatggtttt	Protospacer
***********  *****

26. spacer 11.2|1846692|18|LR134384|CRT matches to position: 1505863-1505880, mismatch: 2, identity: 0.889

aatgattttcagcgtttt	CRISPR spacer
aatgatttttcgcgtttt	Protospacer
*********. *******

27. spacer 11.2|1846692|18|LR134384|CRT matches to position: 1589867-1589884, mismatch: 2, identity: 0.889

aatgattttcagcgtttt	CRISPR spacer
aatgattttctgcatttt	Protospacer
********** **.****

28. spacer 11.3|1846733|18|LR134384|CRT matches to position: 1476449-1476466, mismatch: 2, identity: 0.889

ggcattttttgcctcttt	CRISPR spacer
ggcattttgtgcctcatt	Protospacer
******** ****** **

29. spacer 17.14|3039714|34|LR134384|CRISPRCasFinder,CRT matches to position: 119195-119228, mismatch: 2, identity: 0.941

aagaaacaatatctttcagcaccgcttccatttc	CRISPR spacer
aagaaactatatctttcagcgccgcttccatttc	Protospacer
******* ************.*************

30. spacer 17.47|3039715|34|LR134384|PILER-CR matches to position: 119195-119228, mismatch: 2, identity: 0.941

aagaaacaatatctttcagcaccgcttccatttc	CRISPR spacer
aagaaactatatctttcagcgccgcttccatttc	Protospacer
******* ************.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134384_17	17.17|3039918|35|LR134384|CRISPRCasFinder,CRT	3039918-3039952	35	NC_007483	Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence	10816-10850	7	0.8
LR134384_17	17.17|3039918|35|LR134384|CRISPRCasFinder,CRT	3039918-3039952	35	NC_014316	Nitrosococcus watsonii C-113 plasmid pNWAT01, complete sequence	32470-32504	7	0.8
LR134384_17	17.31|3040828|34|LR134384|CRISPRCasFinder,CRT	3040828-3040861	34	NZ_CP021914	Sagittula sp. P11 plasmid unnamed1, complete sequence	81934-81967	7	0.794
LR134384_17	17.50|3039919|35|LR134384|PILER-CR	3039919-3039953	35	NC_007483	Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence	10816-10850	7	0.8
LR134384_17	17.50|3039919|35|LR134384|PILER-CR	3039919-3039953	35	NC_014316	Nitrosococcus watsonii C-113 plasmid pNWAT01, complete sequence	32470-32504	7	0.8
LR134384_17	17.64|3040829|34|LR134384|PILER-CR	3040829-3040862	34	NZ_CP021914	Sagittula sp. P11 plasmid unnamed1, complete sequence	81934-81967	7	0.794
LR134384_8	8.1|764259|30|LR134384|CRISPRCasFinder	764259-764288	30	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	644666-644695	8	0.733
LR134384_17	17.24|3040376|34|LR134384|CRISPRCasFinder,CRT	3040376-3040409	34	NZ_CP023072	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence	380503-380536	8	0.765
LR134384_17	17.31|3040828|34|LR134384|CRISPRCasFinder,CRT	3040828-3040861	34	NZ_CP033220	Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence	83302-83335	8	0.765
LR134384_17	17.57|3040377|34|LR134384|PILER-CR	3040377-3040410	34	NZ_CP023072	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence	380503-380536	8	0.765
LR134384_17	17.64|3040829|34|LR134384|PILER-CR	3040829-3040862	34	NZ_CP033220	Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence	83302-83335	8	0.765
LR134384_17	17.31|3040828|34|LR134384|CRISPRCasFinder,CRT	3040828-3040861	34	NZ_CP033220	Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence	1658-1691	9	0.735
LR134384_17	17.64|3040829|34|LR134384|PILER-CR	3040829-3040862	34	NZ_CP033220	Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence	1658-1691	9	0.735
LR134384_17	17.14|3039714|34|LR134384|CRISPRCasFinder,CRT	3039714-3039747	34	NC_014838	Pantoea sp. At-9b plasmid pPAT9B01, complete sequence	397496-397529	10	0.706
LR134384_17	17.47|3039715|34|LR134384|PILER-CR	3039715-3039748	34	NC_014838	Pantoea sp. At-9b plasmid pPAT9B01, complete sequence	397496-397529	10	0.706

1. spacer 17.17|3039918|35|LR134384|CRISPRCasFinder,CRT matches to NC_007483 (Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence) position: , mismatch: 7, identity: 0.8

tttgattttccggctcggatgcaacagc--ttgtctt	CRISPR spacer
ctttattttccggatcggatgcaacagcgataggc--	Protospacer
.** ********* **************  * * *  

2. spacer 17.17|3039918|35|LR134384|CRISPRCasFinder,CRT matches to NC_014316 (Nitrosococcus watsonii C-113 plasmid pNWAT01, complete sequence) position: , mismatch: 7, identity: 0.8

tttgattttccggctcggatgcaacagc--ttgtctt	CRISPR spacer
ctttattttccggatcggatgcaacagcgataggc--	Protospacer
.** ********* **************  * * *  

3. spacer 17.31|3040828|34|LR134384|CRISPRCasFinder,CRT matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

atcggcataggcggcccgggctgcatcgtttgcc	CRISPR spacer
atcggcagaggcggcccaggctgccgcgctcgac	Protospacer
******* *********.******  **.*.* *

4. spacer 17.50|3039919|35|LR134384|PILER-CR matches to NC_007483 (Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence) position: , mismatch: 7, identity: 0.8

tttgattttccggctcggatgcaacagc--ttgtctt	CRISPR spacer
ctttattttccggatcggatgcaacagcgataggc--	Protospacer
.** ********* **************  * * *  

5. spacer 17.50|3039919|35|LR134384|PILER-CR matches to NC_014316 (Nitrosococcus watsonii C-113 plasmid pNWAT01, complete sequence) position: , mismatch: 7, identity: 0.8

tttgattttccggctcggatgcaacagc--ttgtctt	CRISPR spacer
ctttattttccggatcggatgcaacagcgataggc--	Protospacer
.** ********* **************  * * *  

6. spacer 17.64|3040829|34|LR134384|PILER-CR matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

atcggcataggcggcccgggctgcatcgtttgcc	CRISPR spacer
atcggcagaggcggcccaggctgccgcgctcgac	Protospacer
******* *********.******  **.*.* *

7. spacer 8.1|764259|30|LR134384|CRISPRCasFinder matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 8, identity: 0.733

ggagaaagggtgtggacgcgatagcaatgc	CRISPR spacer
acagaacgggggtggacgcgatagcccgtc	Protospacer
. **** *** **************    *

8. spacer 17.24|3040376|34|LR134384|CRISPRCasFinder,CRT matches to NZ_CP023072 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence) position: , mismatch: 8, identity: 0.765

--tatcatcggctatgtcgacgcgcgaaatacaagt	CRISPR spacer
ccgataa--ggccgtgtcgacgcgcgaaatacacgg	Protospacer
   ** *  ***..******************* * 

9. spacer 17.31|3040828|34|LR134384|CRISPRCasFinder,CRT matches to NZ_CP033220 (Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence) position: , mismatch: 8, identity: 0.765

atcggcataggcggcccgggctgc---atcgtttgcc	CRISPR spacer
atcggcataggcggcctgggccgccagatagtca---	Protospacer
****************.****.**   ** **.    

10. spacer 17.57|3040377|34|LR134384|PILER-CR matches to NZ_CP023072 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence) position: , mismatch: 8, identity: 0.765

--tatcatcggctatgtcgacgcgcgaaatacaagt	CRISPR spacer
ccgataa--ggccgtgtcgacgcgcgaaatacacgg	Protospacer
   ** *  ***..******************* * 

11. spacer 17.64|3040829|34|LR134384|PILER-CR matches to NZ_CP033220 (Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence) position: , mismatch: 8, identity: 0.765

atcggcataggcggcccgggctgc---atcgtttgcc	CRISPR spacer
atcggcataggcggcctgggccgccagatagtca---	Protospacer
****************.****.**   ** **.    

12. spacer 17.31|3040828|34|LR134384|CRISPRCasFinder,CRT matches to NZ_CP033220 (Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence) position: , mismatch: 9, identity: 0.735

atcggcataggcggcccgggctgc-----atcgtttgcc	CRISPR spacer
atcggcataggcggcctgggccgccagatatcaa-----	Protospacer
****************.****.**     ***.      

13. spacer 17.64|3040829|34|LR134384|PILER-CR matches to NZ_CP033220 (Parasedimentitalea marina strain W43 plasmid pW43A, complete sequence) position: , mismatch: 9, identity: 0.735

atcggcataggcggcccgggctgc-----atcgtttgcc	CRISPR spacer
atcggcataggcggcctgggccgccagatatcaa-----	Protospacer
****************.****.**     ***.      

14. spacer 17.14|3039714|34|LR134384|CRISPRCasFinder,CRT matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 10, identity: 0.706

aagaaacaatatctttcagcaccgcttccatttc	CRISPR spacer
gtgggcgaaaatctttcagcaccgctttcattga	Protospacer
. *..  ** *****************.****  

15. spacer 17.47|3039715|34|LR134384|PILER-CR matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 10, identity: 0.706

aagaaacaatatctttcagcaccgcttccatttc	CRISPR spacer
gtgggcgaaaatctttcagcaccgctttcattga	Protospacer
. *..  ** *****************.****  

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage
LR134384.1|VEH15200.1|1423352_1423772_-|Uncharacterised-protein	1423352_1423772_-	139 aa aa	40	NA	NA	No	NA
LR134384.1|VEH15222.1|1445163_1445580_+|Uncharacterised-protein	1445163_1445580_+	138 aa aa	40	NA	NA	No	NA

Protein sequences of LR134384.1|VEH15200.1|1423352_1423772_-|Uncharacterised-protein

>LR134384.1|VEH15200.1|1423352_1423772_-|Uncharacterised-protein
MKGTEHFTRTIAEYLNQRAMADPLFAPNLMKPNKNIEECITYILNEVQKSGCNGFDDDEIFSMAVHYYDEDDIEVGKAVSCQVTVNHIVELTEEEKAEARQEAIKQYQREELAKIQSRNARVKKTESVVTQVQPSLFDF

gnl|BL_ORD_ID|40 information

• hit_Aca_id: gnl|BL_ORD_ID|40
• identity: 0.5886524822695035
• query_coverage: 1
• hit_coverage: 1.0

Protein sequences of LR134384.1|VEH15222.1|1445163_1445580_+|Uncharacterised-protein

>LR134384.1|VEH15222.1|1445163_1445580_+|Uncharacterised-protein
MKGTEHFKDVIQNYLETRASYDELFAESFHKENKSIDECITYILTEVQRMGCAGLSDEEVYSLAVHYYDEDNIEVGKYINCQVVVNHTIELTEEEKAEARKKAIERYQAEEYRKLTTKKPKVEKQVEQQIAQPSLFEF

gnl|BL_ORD_ID|40 information

• hit_Aca_id: gnl|BL_ORD_ID|40
• identity: 0.5815602836879432
• query_coverage: 1
• hit_coverage: 1.0