CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134391	Kocuria rosea strain NCTC7514 genome assembly, chromosome: 1	0 crisprs	csa3,WYL,cas3,DinG,DEDDh	0	0	1	0

1. LR134391

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1409714 : 1417069	8	Bacillus_phage(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>LR134391|1409714:1417069|DBSCAN-SWA
GGTGACCGGCGAGGACGCGGTGCCCGCGGACGCAGTGCCCGACGACGCGGTGCCCGCGGACGCCCGGGCCGACGACGCCGCCGTTCCCGGCGCGGAGCCGGTGCCCGACGGGGAGGCCGCCCCCGGCCGGGAAGAGCCCGGGGAGGGGGCCGGTCTGGACGCCGTGGACCGCGAGATCCTGTCGCTCGAGAACCTGCAGTGGAAGTACCAGGGGGCGAAGGAGATGGAGATCCGCCGCCGCCTGAACCTCTCGCCCACCCACTACTACCAGCGGCTCAACGTCCTGATCGACACCCGCGCCGCCCTCGAGCACGACCCGATGCTCGTGGCCAGGCTGCGCCGGCAGCGAGGAGACCACGGATGACCCAGTACCCGCACGACGAGTTCGACGACGTCCCCGAGGACGGGCCCCGCCAGGGCGCCCACCGCGGTGTCCGGCCGACCGTCCGCGTGGGCGCCCGGGAGCTCACCACCATCGTCCTGGCCGGGGTGCTGACCCTCGGCGTCGGGGTGTTCTCGTTCCTCAACGCCCCGGGCGAGGCCGCCCCGGCGCCGGGCGCCACGTCCACGGGGTCCTGAGCCGGCCCGGTCCTCGAGGCGTCCCCCATCGGGCTCCGGTCCCGGAGCCCGACCGCTCCGACGCCGTTCACCACGACGTCGTCCACCACGACGTCGTCCACCCCTGACGCCACCGGAAGGAACCACCGTGCAGATCGAAGGAATCCGCGTCCGCGTCCGCGACTGGACCGAGGAGGACCTCGTCGACTACGAGGCGTGGATCATGCCGCCCGCCGGCGGCGGCGAGCACGAGTGGCAGCGCACGGACGGCCCGTTCTACCCGAACTTCACCGCCGAGGGCGCCCAGCGCTGGCTCGGCACCCTCCGGGAGCACGTGACGGCCGGGGACTGGCCGGATCCGCGCGAGACGATGGTGATCGCCGACGCCGCCGACGACCGGTTCATCGGGCAGGTGTCCTGGTACTGGTCGGAGAAGCCCACCGAGGACCCCGGTGACGGCACGCACCTGCTGCCGCTGCGCTCCCTGGGCATCACCGTGTACTCCCCGGAGCACTGGAGCGGCGGCTACGGCACCGAGGCGATGCGCCTGTGGATCGACTACCTCTTCGCCCACTCCGACTCCCACCGCCTCGACCTGGAGACGTGGAGCGGCAACGCGGGCATGTGCCGCGTGGCGGTGAAGCTGGGCTTCACCGAGGAGGCCAGGATCCGCCGGGCCCGCAGGGTCGGCGGCGAGTACTACGACCGGATGGTCTACGGCGTCCTGCGCGAGGAGTGGCAGGGCTGAGCGGAATCGGCTCAGGGGTTTGCACTCTCCGGGGACGAGTGCCAAGATTGCGATTAGCACTCAGTCGTGTGGACTGCTAATGGCTCGGTCCCCGGCCCGACCCGGGCAGCCACCGGCACAGGAGTGACACCTCAACCACCACGGTGAGGTGCCGCACGGCGTCGGGAAGAGTCCGCCGTCGTGCGCGCCGTCCGTCGCGGGCACCGTGGAGGTCGACCGTTTGTCTACCGTCCAGGAGGGACGAAGTCACATGGCAAAGATGATTGCTTTCGACGAAGAGGCACGCCGCGGACTCGAGCGGGGCCTGAACACCCTGGCCGACGCCGTCAAGGTCACCCTCGGCCCGCGCGGCCGCAACGTGGTCCTCGAGAAGGCCTGGGGCGCCCCCACGATCACCAACGACGGCGTGTCCATCGCCAAGGAGATCGAGCTCGACGAGCCGTTCGAGAAGATCGGCGCCGAGCTCGTCAAGGAGGTCGCCAAGAAGACCGACGACATCGCCGGCGACGGCACCACCACCGCCACCGTGCTCGCCCAGGCGCTCGTCAAGGAGGGCCTGCGCAACGTGGCCGCCGGCGCCGACCCGCTGAGCCTCAAGCGCGGCATCGAGAAGGCCGTCGCCGCGGTCACCGAGGAGCTGCTGGCCTCCGCCAAGGAGGTCGAGACCGAGGAGCAGATCGCCGCCACGGCGTCGATCTCCGCCGGCGACCCCGAGATCGGCCGCCTCATCGCCCAGGCGATGGAGAAGGTCGGCAAGGAGGGCGTGATCACGGTCGAGGAGTCCAACACCTTCGGGCTGGACCTCGAGCTGACCGAGGGCATGCGCTTCGACAAGGGCTACCTCTCGGGCTACTTCGTCACTGACGCCGATCGCCAGGAGGCCGTCCTCGAGGACCCCTACATCCTCGTGGTCAACTCCAAGATCTCCGCGGTCAAGGACCTGGTCCCCGTGCTCGAGAAGGTCATGCAGGCCGGCAAGCCGCTGCTGATCATCGCCGAGGACGTCGAGGGCGAGGCCCTGGCGCTGCTGGTGCTCAACAAGATGCGCGGCTCCATCAAGTCCGTGGCCGTCAAGGCCCCCGGCTTCGGCGACCGCCGCAAGGCGCAGCTGGCCGACATCGCCATCCTCACCGGTGGCCAGGTCATCACCGAGGAGGTCGGGCTCTCCCTCGAGACCGCCACCGTGGACCTGCTGGGCCAGGCCCGCAAGGTCGTCGTGACGAAGGACGAGACCACCATCGTCGACGGCGCCGGCACCGCCGAGGAGATCGAGGGCCGCGTGGCCCAGATCCGCGCCGAGATCAACAACTCGGACTCGGACTACGACCGCGAGAAGCTGCAGGAGCGCCTGGCCAAGCTGGCCGGCGGCGTGGCCGTCCTCAAGGCCGGTGCCGCCACCGAGGTCGAGCTCAAGGAGCGCAAGCACCGCATCGAGGACGCCGTGCGCAACGCCAAGGCCGCCGTGGAGGAGGGCATCGTCGCCGGCGGCGGCGTGGCCCTGATCCAGGCCGGCCAGAAGGCGTTCGACAAGCTGCAGCTCACCGGCGACGAGGCCACCGGCGCGAACATCGTGAAGGTCGCCATCGACGCCCCGCTGAAGCAGATCGCGATCAACTCCGGCCTCGAGGCCGGCGTGGTCGTGGACAAGGTCCGCGGTCTGGCCCAGGGCCACGGCCTCAACGCCGCCACCGGCGAGTACGAGGACCTGATGGCCGCCGGCATCAACGACCCGGTCAAGGTGACCCGGTCCGCGCTGCAGAACGCGGCGTCCATCGCCGGGCTGTTCCTCACCACCGAGGCCGTCGTCGCCGACAAGCCGGAGCCCGCGGGCGCCGGCGCCGGTGCCGACGACGGCATGGGCGGCATGGGCGGCATGATGTGATCGACGGCTGAACCGTCGAGCGTGCCCAGCACGCATCCGGCACGGGCCGGGCACCTCGTGGAGGTGCCCGGCCCGTCGTCGTCCCGCACCTGGTGCCGCGGGGCCGGAAGTGGTGTTCAATCGTGAGCACCAGCTGCCGGAGGAGGTGCCGTGGACGTCGTCGTGTGGGACGCGGTCCCCGTCCAGGTCGCGCTCGTGCTGATCGCCTTCGGGCTCACCTCGCTGGTGGGCCTCGAACGGCGGCTGCGGCGCAAGAGCGCCGGGCTGCGCACGCACGCCCTGGTCGGCACCGGGTCGGCGGTGTTCACCCTCGTGTCCGCCTACGGCTTCGGTGTCCTGCCCGGCATCGACGCCGGTCCCGACCCCTCCCGCGTGGCGGCCCAGATCATCACGGGCATCGGCTTCCTGGGCGCGGGCGTGATCTTCACGAACCGGGACGTGGTGCACGGCCTGACGACGGCTGCGAGCATCTGGCTCTCCGCGGCCATCGGGATGGCCTGCGGGGCCGGGCTCGTGCCGCTCGCCGTCGTCGCCACGGGCCTGCACTTCGTCTCCGCGATCCTGCTGACCCCGCTCTCCCGCCGCCTGCCCGGGATGGTGGCCCCGCAGGGACTCCGGCTGCGCTACGAGGACGGGCACGGCGTGCTGCGGGAGGTCCTGACGGTGGTCGACGAGCTGCAGCTGAGCGCCTCCGTGGTCTCGAGCCGGACGGTCGAGGGGTCCGAGGGCACCGAGGTGGAGCTGCTCCTGCGGCTCGAGGGCAAGACGGACCTGCGCACGGCGGCCGTGCAGGTGTCGAGGGTCGCCGGGGTGCGCGACGTCGCCCAGCAGCAGCTCGAGCAGGAGCCCGGCGACTGAGCCGGTGGTGCACGCGGCCCGTGGTGCACGCGGCCCGTGGCGCACGGCGTCCGGGCGCCGTGAAAAGATGAGTGCCATGACGATCACTGCTGCCGCCGACGGCTCCGCGCTGGGCAATCCCGGTCCCGCGGGATGGGCCTGGTACATCGACGACAACACCTGGCGGGCCGGCGGGTGGCCGCACGGCACCAACAACATGGGCGAGCTCAAGGCCGTCCTGGACCTGCTCGAGGCCACGGCACACCGCCCCGACGAGCCCCTGCGGGTGCTGTGCGACAGCCAGTACGTCATCAACTCGATCACGAAGTGGATGCCCGGCTGGAAGAAGAAGGGCTGGAAGAAGAGGGACGGCAAGCCCGTCCTCAACGTGGAGCTCATGAAGGCCCTGGACGCCGCGATGGCGGGCCGCGACGTGCGCTTCGAGTGGGTCAAGGGCCACGCCGGCCACGAGCTCAACGAGGCCGCCGACGTCCGTGCCCGGGCCGTGGCCACCGCGTTCCAGACCGGTCGCCCCGCGCCCGAGGGACCCGGGTTCGACGGCGCCGCCCGGCACCCGGACGGAGCGGGCATCCGGACCTCGGCCCGGGAGCTGCTGGACGCCCCGGAGCCGGTGGACGCCGCGCCGCTGGTGGAGGCCCCAGGGCCGGGGGAGGACACGGATCCCGGCGCGTTCGAGGACCGGCACGACCCCGATCTGCTGAGCGAGCTGCTCGCCCACGAGGAGGAGCTCGCCCGCGGCCGCACGGCGGGGGAGACCGTCCAGGAACTCGAGCGGGACCTGCTCCGCCCGGAGGTCAGGGCGGACCCGGGCCGGCTGGGCCAGCTGCTGCACGAGGCCTTCGCCGAGGTCGGTGCCTCGGGGTCGTGGCGCTCCCGGGCGGACGTCCTCGACCGGCTGCCCCGCGAACCCGGGCTCGGCGCGGTGGACGTGCACGTGCTGGAGGCCACCGAGCTCGGCCCCGCGGCCGTGCACCTTGTCTACCGGCTCACGGCGGGGGACCGCACGAGCCTGCGCAGCTCCCTGTGGGTCCGGGAGGACTCCCGCAACGAGCTGGGGCCCTGGCAGCTGCGCTTCCACCAGGGCACCTACGAGTCCTGACGGGCCCGCTCACACCTCCGGGGCGTCGTCGGCGGGCTCGATGCCCGGCACGCGCACGGTCATCGTCGCCCCGCCGCCGGGGGTCTCGGTGAGCCGCACCGTGCCGTCGTGCTGCTGGACGATCGCGGCCACGATGGACAGCCCCAGCCCCGTCCCGCCGGTCTCGCGCGTGCGGGAGGAGTCGGCCCGGTAGAAGCGCTCGAAGACGCGCTCCGCGTCCTCGCCCTGGATGCCCGGGCCGTGGTCGCGCACCTGCAGGACGGCGTTGAAGGAGTCGTCGACCGAGCGCTCCACGCCCACCGCGATCTCGATCGGCGTGCCCTCCGGGGTGTAGCGCAGGGCGTTGGTCACGAGGTTCGCCACGACCTGGCGCAGCCGGAACTCGTCGCCGTGCACCCATGCCGAGACCGGGCCCCCGCCCCCCAGGCCGCCGACCTCGATCCGCCGGTCGGGGGCGGAGGCGCGGGCGTCCCCGGCCGCGTCGAACGCGAGGTGGAGCAGGTCCACGTCGACGTTCTCCGCGGGCCGCCGCTCGTCGAGGCGCGCGAGCATCAGCAGGTCCTCCACGAGCTGCGTCATCCGCTTCGCCTCCGACTCGATCCGGGACATCGCCCCGGCCACGTCCTCGGGCTCCTGCAGGGCGCCGTGCCGGTAGAGCTCCGAGTAGCCCCGGATGGTCACCAGGGGCGTGCGCAGCTCGTGGGAGGCATCGGCCACGAACCGCCGGAGCTTGGTCTCGGACCGCGTGCGGGCGTCGAAGGCGTCCTCGATGTGGCCGAGCATCGCGTTGAGCGACGCCGAGAGCTGGCCGATCTCGGTCTGCCGGTTGTAGCCCTCCATGCGCTGGGAGAGGTCGCCCTCGGCGATCCGGGCGGCGGTCTGCTCCACCCGGTGCAGGGGCGCGAACGCCCGGGTGACCAGGATCCAGCCGACCGCCATGGCCGCGAACAGGGTCGCCACCCCGAAGCTCAGCGTCAGGAGGGTCACCGCGCTGAGCATCGCGTTCATGTCGTCGAGCGGCTCGGCGACCGCCACCACGAGGTTCAGCCGTTCCGTCTCGGCCGCGACCACCCGCCACCGGCGGTCCGGGGCGTCCACGGAGCCCACGGTCGTCGGCTCGAAGGGGTTCTCCCGCACGTGCTCGAGGTCGACCTGCGACAGGTCCGGCCGCCGCTCGAGCACGCCCTCCGGGGTGTGCACCGCCTCGGCGAGGGTCTCGCCGTCGGCGTCGAGCAGGAACCCGGCGTGCGGCACCTGGACGCCCTGCGCTCCGCCCATGTCGGCGACCAGCACCGTGGAGACCGGCCGGACGGAGTCCCGCAGCCCGCGGTCGATGTCGTTCAGGAGCGAGGTGCGCAGCACCGAGATCGCCACGAAGCTCGTCACCAGGATGGACAGCGCCAGGAGCAGGCCCGTGAGCACCATGAGCTGCGAGCGCAGCGATGCCGAGCGCCACCGGGAGGACAGGGTGTGCATCCCGGGACCGGGTCAGTGGTTCTTGTGCTGGGAGCGCAGGAGGTAGCCGACGCCGCGCTTGGTGTGGATCAGCGGGGGCAGCTCGGGGTCGTTGTCGATCTTGCGGCGCAGGTAGGAGATGTAGGACTCCACGATCGAGGCGTCCCCGTTGAAGTCGTACTCCCACACGTGGTCGAGGATCTGCGCCTTGGACAGCACCCGGTTCGGGTTGAGCATGAGGTAGCGCAGCAGCTTGAACTCGGTGGGGGACAGGTCGATCTCCCGCTCGCCCCGGAACACCTCGTGCGCGTCGTCGTCGAGGACCAGGTCGTCCACGCGCAGCCGGGAGTCGTCCTCCTCGGCGGGCTGCGTGCGGCGCAGGACCGCGCGGATGCGGGCGACGACCTCGTCGAGGCTGAAGGGCTTGGTGACGTAGTCGTCGCCGCCCACGGTCAGACCGGTGACCTTGTCCTCGGTCTCGTCCTTCGCCGTGAGGAAGAGGATGGGGAAGTGCTGCCCGGACGCGCGCAGCTTGCGGGTCACGGTGAAGCCGTCCATGTCCGGGAGCATGACGTCGAGCACCGCGAGGTCCGGGTTCTCGGACTCCGCCTTGGCCAGGGCGTCACGGCCGTTGGCGGCGGTGACCACCTCGAAGCCGGCGAAGCGCAGGGACGTGGCCAGCAGCTCGAGGATGTTGGGCTCGTCGTCGACGACGAGCAGTTTCGCTTCGGGGTTGTCGTTCTTCACGCCGCCCAT

Protein sequences of DBSCAN-SWA_1

>LR134391|1409714:1417069|1413051_1413759_+|VEH42314.1|DBSCAN-SWA
MDVVVWDAVPVQVALVLIAFGLTSLVGLERRLRRKSAGLRTHALVGTGSAVFTLVSAYGFGVLPGIDAGPDPSRVAAQIITGIGFLGAGVIFTNRDVVHGLTTAASIWLSAAIGMACGAGLVPLAVVATGLHFVSAILLTPLSRRLPGMVAPQGLRLRYEDGHGVLREVLTVVDELQLSASVVSSRTVEGSEGTEVELLLRLEGKTDLRTAAVQVSRVAGVRDVAQQQLEQEPGD
>LR134391|1409714:1417069|1410073_1410292_+|VEH42311.1|DBSCAN-SWA
MTQYPHDEFDDVPEDGPRQGAHRGVRPTVRVGARELTTIVLAGVLTLGVGVFSFLNAPGEAAPAPGATSTGS
>LR134391|1409714:1417069|1416346_1417069_-|VEH42317.1|DBSCAN-SWA
MGGVKNDNPEAKLLVVDDEPNILELLATSLRFAGFEVVTAANGRDALAKAESENPDLAVLDVMLPDMDGFTVTRKLRASGQHFPILFLTAKDETEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQPAEEDDSRLRVDDLVLDDDAHEVFRGEREIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVWEYDFNGDASIVESYISYLRRKIDNDPELPPLIHTKRGVGYLLRSQHKNH
>LR134391|1409714:1417069|1414867_1416334_-|VEH42316.1|DBSCAN-SWA
MHTLSSRWRSASLRSQLMVLTGLLLALSILVTSFVAISVLRTSLLNDIDRGLRDSVRPVSTVLVADMGGAQGVQVPHAGFLLDADGETLAEAVHTPEGVLERRPDLSQVDLEHVRENPFEPTTVGSVDAPDRRWRVVAAETERLNLVVAVAEPLDDMNAMLSAVTLLTLSFGVATLFAAMAVGWILVTRAFAPLHRVEQTAARIAEGDLSQRMEGYNRQTEIGQLSASLNAMLGHIEDAFDARTRSETKLRRFVADASHELRTPLVTIRGYSELYRHGALQEPEDVAGAMSRIESEAKRMTQLVEDLLMLARLDERRPAENVDVDLLHLAFDAAGDARASAPDRRIEVGGLGGGGPVSAWVHGDEFRLRQVVANLVTNALRYTPEGTPIEIAVGVERSVDDSFNAVLQVRDHGPGIQGEDAERVFERFYRADSSRTRETGGTGLGLSIVAAIVQQHDGTVRLTETPGGGATMTVRVPGIEPADDAPEV
>LR134391|1409714:1417069|1410419_1411019_+|VEH42312.1|DBSCAN-SWA
MQIEGIRVRVRDWTEEDLVDYEAWIMPPAGGGEHEWQRTDGPFYPNFTAEGAQRWLGTLREHVTAGDWPDPRETMVIADAADDRFIGQVSWYWSEKPTEDPGDGTHLLPLRSLGITVYSPEHWSGGYGTEAMRLWIDYLFAHSDSHRLDLETWSGNAGMCRVAVKLGFTEEARIRRARRVGGEYYDRMVYGVLREEWQG
>LR134391|1409714:1417069|1409714_1410077_+|VEH42310.1|DBSCAN-SWA
MTGEDAVPADAVPDDAVPADARADDAAVPGAEPVPDGEAAPGREEPGEGAGLDAVDREILSLENLQWKYQGAKEMEIRRRLNLSPTHYYQRLNVLIDTRAALEHDPMLVARLRRQRGDHG
>LR134391|1409714:1417069|1413835_1414858_+|VEH42315.1|DBSCAN-SWA
MTITAAADGSALGNPGPAGWAWYIDDNTWRAGGWPHGTNNMGELKAVLDLLEATAHRPDEPLRVLCDSQYVINSITKWMPGWKKKGWKKRDGKPVLNVELMKALDAAMAGRDVRFEWVKGHAGHELNEAADVRARAVATAFQTGRPAPEGPGFDGAARHPDGAGIRTSARELLDAPEPVDAAPLVEAPGPGEDTDPGAFEDRHDPDLLSELLAHEEELARGRTAGETVQELERDLLRPEVRADPGRLGQLLHEAFAEVGASGSWRSRADVLDRLPREPGLGAVDVHVLEATELGPAAVHLVYRLTAGDRTSLRSSLWVREDSRNELGPWQLRFHQGTYES
>LR134391|1409714:1417069|1411269_1412901_+|VEH42313.1|DBSCAN-SWA
MAKMIAFDEEARRGLERGLNTLADAVKVTLGPRGRNVVLEKAWGAPTITNDGVSIAKEIELDEPFEKIGAELVKEVAKKTDDIAGDGTTTATVLAQALVKEGLRNVAAGADPLSLKRGIEKAVAAVTEELLASAKEVETEEQIAATASISAGDPEIGRLIAQAMEKVGKEGVITVEESNTFGLDLELTEGMRFDKGYLSGYFVTDADRQEAVLEDPYILVVNSKISAVKDLVPVLEKVMQAGKPLLIIAEDVEGEALALLVLNKMRGSIKSVAVKAPGFGDRRKAQLADIAILTGGQVITEEVGLSLETATVDLLGQARKVVVTKDETTIVDGAGTAEEIEGRVAQIRAEINNSDSDYDREKLQERLAKLAGGVAVLKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALIQAGQKAFDKLQLTGDEATGANIVKVAIDAPLKQIAINSGLEAGVVVDKVRGLAQGHGLNAATGEYEDLMAAGINDPVKVTRSALQNAASIAGLFLTTEAVVADKPEPAGAGAGADDGMGGMGGMM

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH42310.1|1409714_1410077_+	Protein of uncharacterised function (DUF3263)	A0A0A7RXU7	Mycobacterium_phage	1.2e-09	55.7
VEH42311.1|1410073_1410292_+	Uncharacterised protein	NA	NA	NA	NA
VEH42312.1|1410419_1411019_+	Uncharacterised protein	NA	NA	NA	NA
VEH42313.1|1411269_1412901_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.2e-146	53.6
VEH42314.1|1413051_1413759_+	putative Mg(2+) transport ATPase	G3MA03	Bacillus_virus	1.1e-16	41.0
VEH42315.1|1413835_1414858_+	Ribonuclease HI	J9Q745	Salmonella_phage	7.2e-20	42.7
VEH42316.1|1414867_1416334_-	Probable sensor histidine kinase TcrY	W8CYF6	Bacillus_phage	6.2e-25	29.2
VEH42317.1|1416346_1417069_-	Probable transcriptional regulatory protein TcrX	W8CYM9	Bacillus_phage	8.6e-36	38.7