CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134406	Pseudopropionibacterium propionicum strain NCTC12967 genome assembly, chromosome: 1	11 crisprs	csa3,csm3gr7,cas10,cas6,csx10gr5,RT,cas3,cas2,cas1,cas8u1,csb2gr5,csb1gr7,DEDDh,DinG,PD-DExK,WYL,cas7	1	14	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134406_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134406_2

378893-379069

TypeIII

Consensus_repeat	Method
GATCGTCTGAAACCACCGCGAACCTTAAAGCGGATTGAAACA	PILER-CR

2 spacers

csm3gr7,csx10gr5,cas10,cas6,RT

The CRISPR arrays of LR134406_2

>merge|LR134406|2|378893-379069|PILER-CR
GTCTGGAACCACCGCGAATCTTAAAGCGGATTGAAACAGATCCAGTAGATTGACAGCTCGCTTGTGGCTCGTCTGAAACCACCGTGAACCTTAAAGCGGATTGAAACATGACCGCCTGCATGAGGCGGGCCCATCGATCGTCTGAAACCACCGCGAACCTTAAAGCGGATTGAAAAA

>LR134406|2|1|378893-379069|PILER-CR
GTCTGGAACCACCGCGAATCTTAAAGCGGATTGAAACAGATC	CAGTAGATTGACAGCTCGCTTGTGGCTC
GTCTGAAACCACCGTGAACCTTAAAGCGGATTGAAACATGAC	CGCCTGCATGAGGCGGGCCCATCGATC
GTCTGAAACCACCGCGAACCTTAAAGCGGATTGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134406.1\|VEH69077.1\|374752_375379_+\|RAMP-superfamily	csm3gr7	cls000184_csm3gr7_CAS-III-D	gnl\|CDD\|187857
LR134406.1\|VEH69072.1\|366162_367530_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69084.1\|383102_383564_+\|putative-endoribonuclease-L-PSP	unknown	unknown	gnl\|CDD\|100006
LR134406.1\|VEH69078.1\|375375_376572_+\|CRISPR-associated-RAMP-protein,-Csx10-family	csx10gr5	cls000715_csx10gr5_CAS-III-D	gnl\|CDD\|187879
LR134406.1\|VEH69090.1\|388131_390156_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|378373
LR134406.1\|VEH69083.1\|382941_383106_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379366
LR134406.1\|VEH69075.1\|370728_373230_+\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
LR134406.1\|VEH69088.1\|385973_386786_+\|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component	unknown	unknown	gnl\|CDD\|378925
LR134406.1\|VEH69076.1\|373241_374756_+\|CRISPR-associated-protein-Cas10/Cmr2,-subtype-III-B	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|187810
LR134406.1\|VEH69071.1\|364768_366166_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69073.1\|367965_369780_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380122
LR134406.1\|VEH69080.1\|377882_378326_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69089.1\|386872_388132_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69081.1\|379203_381057_+\|Group-II-intron-encoded-protein-ltrA	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
LR134406.1\|VEH69082.1\|382288_382573_+\|Transcription-factor-WhiB	unknown	unknown	gnl\|CDD\|376791
LR134406.1\|VEH69087.1\|385188_385956_+\|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA	unknown	unknown	gnl\|CDD\|224054
LR134406.1\|VEH69074.1\|369782_370736_+\|Uncharacterized-conserved-protein-(DUF2276)	cas6	pfam10040_cas6_CAS-III:CAS-IV	unknown
LR134406.1\|VEH69086.1\|384156_384780_+\|putative-NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239518
LR134406.1\|VEH69085.1\|383560_384178_+\|UV-endonuclease	unknown	unknown	gnl\|CDD\|223255
LR134406.1\|VEH69079.1\|376573_377890_+\|CRISPR-associated-RAMP-protein,-SSO1426-family	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187814

Protein	Function_ID	Function_description	E-value
LR134406.1\|VEH69077.1\|374752_375379_+\|RAMP-superfamily	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	1.00025e-13
LR134406.1\|VEH69084.1\|383102_383564_+\|putative-endoribonuclease-L-PSP	gnl\|CDD\|100006	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	9.13867e-58
LR134406.1\|VEH69090.1\|388131_390156_-\|Uncharacterised-protein	gnl\|CDD\|378373	pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00213993
LR134406.1\|VEH69078.1\|375375_376572_+\|CRISPR-associated-RAMP-protein,-Csx10-family	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	5.16411e-06
LR134406.1\|VEH69083.1\|382941_383106_+\|Uncharacterised-protein	gnl\|CDD\|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	0.000471589
LR134406.1\|VEH69082.1\|382288_382573_+\|Transcription-factor-WhiB	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	2.6144e-22
LR134406.1\|VEH69088.1\|385973_386786_+\|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.34468e-07
LR134406.1\|VEH69073.1\|367965_369780_+\|Uncharacterised-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	2.38977e-05
LR134406.1\|VEH69079.1\|376573_377890_+\|CRISPR-associated-RAMP-protein,-SSO1426-family	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.12595e-08
LR134406.1\|VEH69076.1\|373241_374756_+\|CRISPR-associated-protein-Cas10/Cmr2,-subtype-III-B	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	9.18583e-10
LR134406.1\|VEH69081.1\|379203_381057_+\|Group-II-intron-encoded-protein-ltrA	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	4.92381e-53
LR134406.1\|VEH69087.1\|385188_385956_+\|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.21723e-78
LR134406.1\|VEH69086.1\|384156_384780_+\|putative-NUDIX-hydrolase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	1.26947e-47
LR134406.1\|VEH69085.1\|383560_384178_+\|UV-endonuclease	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	6.23649e-100
LR134406.1\|VEH69075.1\|370728_373230_+\|CRISPR-associated-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.41592e-46

>LR134406.1|VEH69080.1|377882_378326_+|Uncharacterised-protein
MPEQKRTTETRYLSGQGEVEWSQLRKEAGELTCAWADYEGFHIGPCPDEAPPYSHIWGWSRDGEVLLRGRIDAGRVIAGWLRKTPGGGKKEKEVPTVTRQVITWKPDHERLKINFTGEKANWPEKMQSVEVLGENPVTFIKEEKERS
>LR134406.1|VEH69079.1|376573_377890_+|CRISPR-associated-RAMP-protein,-SSO1426-family
MILTYIRVTIRPLGPWRVGAVGQDQAALETLRDNAGRPALPPSSLAGSFRAGIDEAARELLMGQEKMKDGKPDFRASTLWFLGTRLTGGEDGQPEIRRRTATAVDRNRRAARNYGSHDVEEVYDTETIQLYLRHEGDPAKALQLLGRWQVTIGGGISTGLGRAKVTAISYRTLDLSQPADLLARVSLRDAGPDALDELLQGGAKHKVTAEESPTLLKATIRIDGLNLPTQNLKDQLRPEDHWFHGTRWKGILRGRVEYIGRSLGLDVCGAEDQQWRGCGRCSVCEVFGSGETGVGRWSFHFTPLKPDHPAGRTRNAIDRFTGGVAEKKLFPERTVTSRARLVIGQLSGVETHHAWVLKALLLALRDLQEGYLGIGGRTSTGLGSVRFEKLRLGEEFQRFGMAATTPEAVEGITEAEIELERTHRSLKEKEEKEEMQHA
>LR134406.1|VEH69078.1|375375_376572_+|CRISPR-associated-RAMP-protein,-Csx10-family
MSWWRVTVTSEQAIVVGTGATRAFHTPSLGYIPGSTLRGALATAWRIRYGDPDPAFRKTFDHSVRFGPLLAVTGDVASQSVLRRKYAPGDGEYVDCAFEDAGDAVGEHLKGDVIWGDKNALKVVTTTAIDPEKRTALDGNLFSREAHRRRQTYHGLIHGDENLVGRLVELESASIGGRRSVMGRARIRIEPTPPPELPASGDVVLRTLSPTIRLNEAGAPTLEWKGMKTFEGFEVVDAWGGRVAGEGISGWHMASGTPKPGDIAIAPGAVVKLREPDRDKVLELLERGLGTRRAEGFGWLEQVTKPWRPPGGKPGEEQTGEVATPDLDAMLGWPLEDRRAVAGWLQELREGDDTKTLEGRRAWLNLTEGRRAAARRVIRDTPQAQRNVWASRLREGRN
>LR134406.1|VEH69077.1|374752_375379_+|RAMP-superfamily
MTTTKTTIELDIRFNTAFRISQGYGQGEVDDVIDEENPLPATSLKGVMRDAARMVLPGKRQGDKYVDHHLVDAVFGKRGSDSSPWNFSDGKLDHTDDPRERIRVRSRVAIDEQRRARAGALLFAEELHADRATATISLTQPLPPEELDTHVALLHVAARLVDGIGADRRRGLGWVSITTDADDIEAMVDRIERARNGQAGNEQVRSES
>LR134406.1|VEH69076.1|373241_374756_+|CRISPR-associated-protein-Cas10/Cmr2,-subtype-III-B
MTCFASIGVKQIQGYLARSRRLWGRRGASDMLAYLTDTTGAADRIEERSFETAGEILQGFPGVTVNDDAVDVDSVLNIRGEDPGEVRKATEALALNIKLHLPAAHVHTTFRKAAGYGDVIRAEDEDIPAETRQYPPSMIEFPLAHHCDECSSGMAAEETSVGEETTRLCGDCASRAPRSGRNRLLNWSLLGGVQQGFMVEQVMLRELRKQEKFGNLTQVEHFKELAQLGDLGSEGSRTHTSNHVATIFADGNGFGKLFRELRVAAADSEGGLQELRRVSKAVKDATKQALRKAIEEITDDRVAASNRMPAVPHILGGDDVLVTVPATKAWPFLIAFLKHLEQESGSDTFGLGAGKVSFSAGMVICKLAYPIGDQVELATALLRTAKEAVRGNDWSFAWLDVTNEGPKPPRRFLTLDDWGRIEELRDLARRLGDDERGNAARATLRQELRIRDEKDRTLHLRHRAGRLPGVADLLNAVFGRNWERATNQGAEELLTVLNIMRWYA
>LR134406.1|VEH69075.1|370728_373230_+|CRISPR-associated-protein
MNEYAYVEEIDEDHVRVWPLTDSELTWNGEKVLTRKDGFTLEIEMCLGYEKGNPGYYLVETDELPEVCMLESPISGTSVGSKRSKTWRKELWIPEGSGGLEGALRDKAYSHDFDLLEVEPKRLCWGGEGLGRWIETAKEEVERKAARKKAGEIREKLKEFHDGGKAFINPYTFVPLPDKVKRDKPHGHARAVEGGLTGYLDVEFAFRSPLMMPVDWNTPGETTVTGTRIEERVTVPGSSVRGAVRSLFEVISSSCLSILDPDYRPAHRASLEMRPDKRLAVVDEVDSDGKVISVLPTSKVVWIRAEALWHLFGGAAGLRSGVRISLDENAIYERSFGGDKGKPVKREQLKPEGEPTLKKGGDWVVHVADAGTKGDHPADHIYVAVGKLETTPIRLGEMTWEDYRELCRYSVDVTGGGLAPSAPAWDAEEWSGVAVMVKHTDRSRGNRETAIGKRRKSDGALAPGDSVWITTRSEGGERVVTGLTMSSSWRELGKGPIRNRLPDESLLPCRDPDELCPACATFGFIEARAEGQRRDQAEHNAYASHLRFGAFETDAPVPLRLVLPPPTRSPRPSAGAFYLEHLTAEGENREAGVAELGKPASRWGGQLDSSGMRRIAGRKFYWHGQEPKDTTLTPRQVRRAHYPKEGAPDCQETMRWITEGTPVLKGRIHFENIDARQLGLLMLALEPRELAKRAGITVNGELATHLGGGKGLGFGTAVGRITATCIQDAAGRYRAGAGKVEVDPWGAAMQVIDPDVPWITGLVKALGTESVPADRIWYPTMGNFTQRDSDVQQKKFDKSFEYYARFSGGKDKKTRMRTLPRIDDPIQYMSNEN
>LR134406.1|VEH69074.1|369782_370736_+|Uncharacterized-conserved-protein-(DUF2276)
MESPRSLPAVRVRIWQVLLRAETGERHLTPTPSGIHAMVSSWLHRSPGGGDGEPHSEEHRYAVRWRQVSEFAVLVELRLFDDFLTPLLVDRVAFGNRERLGMVTLRVEGIQEVASVNLAGIAGRPSKGWRLRFPEGVTFKRGDVFMPWPDPYLLLGSIQRRLALICGRDRDEQRLPREVMASVFPTQVELQSVRWTEGDPSRASLRDVRVVLGEVDWLCTGDAASSSLIDRLLQVGELTGIGARTAWGAGVLEIADRVPMRAIATGNKRRSRRVPSRPSGIGRTGRTPFPRFAGESGEWGFGDERPGGSLDRRFGSE
>LR134406.1|VEH69073.1|367965_369780_+|Uncharacterised-protein
MTSSRPPGRGNGPVFISYHQKSGTADAEFIETYLRAGGIVPWRDIRDLEAGTVERNITQAFEEGLSGGVLLLSDGISESSFVPKTEAPLLVGAHKADPEGFQLHIINTFRKPGSLDECDFKAPGKQLGTKYPEAEQLNDHLQRRLLHSDDKGGKPVSELNLVLRDLLRNRLKVRRPQLDDGEIEIGLQTRPEPNHLPADGRTLPEADLHIRLRQDNATQIPEELDYRCLQQALPVLIDELHAARIRRVLFRGGCHPSLAWALGAALPHAREIEHFTWRDTYGKDWVSADEPEEHSTSIHLETLNPDGSRRALGFAPGEIPSGAELRRVLWGDAPAKNAVVLLAADDLRPQPLLALAEKLEDPAVLVINLHTPSADGAKKWIDHTEGAGLARRAGEILRRLRDLAKLHLAVSAPAAMAALTARWCNTLTIDFYELGNTGMGAREYIRVLRTESGNKSPITGVFPQGVPQVDEVRKLINLTPHDVTYYPEAGEPFTWAAPEGPDQWVRRQEQSEELPSLRVQGREIPVTRIRQGAIAPEPDPMPGVGYIVPRISAETARRPDFFFPHGEVRGQGGGIIGCRRLGCFEAVSNRVRPYLELLDPVPQD
>LR134406.1|VEH69072.1|366162_367530_+|Uncharacterised-protein
MSETDKQIVIEALGGGPVQVGTGGPAPAGNVTLPLRTVVVVVNPAEPEEAPCCLVADVDESQEELADLYGGATAGLASRAAEWDGPGRVGKLPLAPDDEDMAGAVARLGVVRWLQEWSPLPLDWRLLRLEELTLVASLTGRLADEPDRLPELAELCRYFHDHIDEEEFAPLTGLLGDALEQVANRFPLSGESGDWARQLLATWPPGEETTSPGRLDVELIGRFTPELALAAGPERWGKLAESATVDWEQLPRGWVATGENNARWVLDLDVEGKIHCAVAVDGPQEVRWFGGVSWGRELNEDDRLGFDLFSGDVPEPVLSGELGYDPRTRGWAGSVTGTAVQTARLKQGREAGAGRSLRVRRDTTLRETFAPVAAAARRWSVRGVSALRLLTAADDRDLRAGAVAALTEAASCWDAAGWKRDAEACRGLLRKVGSGEWKDWVGLTVAEQWLLHPRS
>LR134406.1|VEH69071.1|364768_366166_+|Uncharacterised-protein
MSKSFAQWCGQWLERLPKWERYAPKGFGVTVNLVVKRLLHPGVTAGPEWAGVERGERIGDERGRELLTWLDGRRDVVEKLLTLLRTGVDDAMARARQQGLDVTVSRVAEALAVAIGSKWKQAVVLTDMEVESVWETFLRNSVPLGRRMGRREFAGYQGLFDRIWEDKGRASLDAEPYGRYGLGENERPPLVVEERENVFLGLQRSVFSRFSFAAREPYVRGSADEIARREVSRTCARLGLIDESARIALRSLHAGLMNGPSGPGWKPPGATPGKRAWNDDLLPLGEETDPQGDPALEWEGIHAGLAALAQAMIATFTGRTLQGQYLKLAEKMEEAHQDAMRRAWHECFRLDMTGRPVTEAKASKIVKQAIYGGIPSGQKQRRDPRRLTGGHKDEIPPEDAGGSAEADRLALFERALEWLRADEERARAVVRGDEDATAEYERAAAELGLPSIDEVCHHMDQDWKQ
>LR134406.1|VEH69081.1|379203_381057_+|Group-II-intron-encoded-protein-ltrA
MTTDNLLLEEEKVVECFTLPALRCAWERVLKKDAQDGDISDSVERFAEGVQERLEELTEELRAGTFWPSDLTRVVIPKKNGERFLDIPSVRDRIVERAILEHINPAIDPLFGATAFGYRPGLGVADAAQEVVRLREEGYTHVLRTDMHDCFPSLPVALLRRQLEFLIAEPEILVVVDLLLDRCTRFPGKGRGVFPGLPQGSPLSPLLANLALIPLDEALVDAGFPVVRYADDLVIALEEPGDAPEALRTATKVLKELGMELGAEKTAVASFFEGFAFLGEDFGPRYPPAEGEGRIREPDKKILYVAKQGSRIQVRKGRVQVIQDDHELLSVPVSDISRMVCFGSVGVTAGARNWALQNGVDVLLASRGGGLHRTIETTPKRCTERRPIVPVHDSPRRMRDRLAGHRTGPGHGCPARRPRHPPQPGPRPDGGVPPTRGGPRRGDGGPQTRSHRVARPGGGGQGRDFPHRGGTGTDAGRLRTQNTHMRGRGVGRLPLHQTRPPVPTGPAATRSHHGPRTEMDGTGMAMMHLAAYDVHEDQRRAQFSALLQAYGDRIQYSVFLLGITPEELVEIQSRAAGIIDENTDSLWIVRQCAACWEEARTLGQAHPPARVLHYTVM
>LR134406.1|VEH69082.1|382288_382573_+|Transcription-factor-WhiB
MSLGELGEWTLRAKCRDMEDVLFPESKDQRRVRNICMSCPVRMECLAEALDNRVQWGVWGGMTERERRRLLRSRPDITSWREVLLTYGRLEEAS
>LR134406.1|VEH69083.1|382941_383106_+|Uncharacterised-protein
MTKWEYLTAPILSHVSQQILNNFGAEGWELVTVAPGPTPETMVGYFKRPLEEGR
>LR134406.1|VEH69084.1|383102_383564_+|putative-endoribonuclease-L-PSP
MSTPTQRLAELGLTLPPVAKPLAAYTPAITVGNQVWVSGQLPLRDGKLVATGRLGDAVEPAEGAEAAKVAALNALAAVADQAGGLDNVARILKAVVFVASTTDFTAQPQVANGASELLGEVFGTPHVRSAVGVAVLPIDAPVEVELVAELAAR
>LR134406.1|VEH69085.1|383560_384178_+|UV-endonuclease
MTAALIGSRLAAAYPDARCDLDHRSPFELLVAVVLSAQTTDARVNQVTPELFARYPDAEHLAGAEQDDVEEIISSLGLYRSKARSLTGLARALVADHDGRVPDSLDELVKLPGVGRKTANVVLGDAFGIPGITPDTHVIRVSNRLGWVHSTKPDDVERAVGALFPPGEWVVLCHRIIWHGRRCCRARTPACTACPVEDLCPSSQA
>LR134406.1|VEH69086.1|384156_384780_+|putative-NUDIX-hydrolase
MSQLSGLTAALRDGAAGPLGQFGRAPDYARPAAVLILLTDEPDPAVLFTERAGGLRAHAGQISFPGGGAETGETPVATALREACEEVGLDAGLVTVLGQLPTAWVPASGYEVTPVVARWSEPLPLAPVDPGEVANVLQLRISQLSDPATRVTATVPGGYRGPGFQLGDLFIWGMTAHLLDVTLRVAGWEQSWDRDREVPVPGRFLRD
>LR134406.1|VEH69087.1|385188_385956_+|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA
MTTAISFQNVTKDYATSKGIVRALRGLDLEIPQGVIYGLLGPNGAGKTTALEIAVGLREATGGLARTMGLDPVRENAEVRNRISIQPQNATGFDLLTGEELLDIWSALYPNPRPAEELIRLLDMSGYIDRQLRRLSGGQRQRVNLALALICGVNVTVLDEPSTGLDPMARADLWDALRHLKQEGMTIILSTHDMEEAEVLCDHLAIIDAGAVVAEGSPSELIADAERRHQGPDRFRGLTDVFFQAAGRSFHQQNK
>LR134406.1|VEH69088.1|385973_386786_+|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component
MSTLSITRPLTAANQEIAMPTASVTRKLFKLHWLELTRNRAQFIFAMVFPLFMGGMFFLISTVMPSSTAANFGAMILPMSGYLALSGVALNLTAGPLVQYREQGTFRVLGTTPLSRTRFLLTHLFLRVVFAMALCAALYLLGAAIGLADWAAIPALTAASLPALLMFLAIGYWLGGVMTSSQATSSVSAFLQVGFLFISGAGIPMWLLPETFQQVISWLPPALSVDPLFWAANSPFQRHDPWLTSGITIVLAALVMLAAIRTFRWEVRSR
>LR134406.1|VEH69089.1|386872_388132_-|Uncharacterised-protein
MKTWNTVLRLSAALFLVLLPLGSCAPAGNRDNSPAPPFSLNLKDAGNSYSPFTASTVKGSGWNLGASVSIDNSRSVHSTPFGIIIVLNTYYPLDTSSKNDDSQATKILCLDPANGSLKWARILEPASSEIGRSDTGTAQDLFRRDSSPGNPGPVVTSPNGHHLAIMVKPYLVSGSSSDVSDQRMRIVVIDTETGDATRTFEVSGLVLGQVLTNDSLVVETSQHFYPAGTGTLNVFSLTEAQAGPTSFRTDRWLVGATSDSLLVSSQNLRKYDRLPTTLTRISTSGEELGTVAGVTAVRDGSWVFRYQDPEAATAAIKAGSKDVLPKELFNIDSGAAFDITDLDVVSAGLSTGPGFLLRRLVPGENDEQKPFYVPVSWLPAAPDSRELRTDDVAWFDEGDYKKQEGRYIMRAVRMGEKPG
>LR134406.1|VEH69090.1|388131_390156_-|Uncharacterised-protein
MAPTPDDAVTTADPPPRFVPGLRDLRLAGLGVVAASALLVIPFWGDVTLLLPTVTPHLLVLAAFPVFWLLAAWLGSRRIIPAVIVTVGSIAAAGFHCRRWWVVHEQSSIRLGLLLVMAVVSLGLGLFAVSDLLLRGIRDGMDPRPETPDDPARFRPLPRDPAPPSAVIRRLASILCPAIALVVAVLLVHTLANPTSQVTASPPSGDLPARPTRIGTTPAWEKDVPGLLEMAAGAAGPVLFTGEGLTALNPADGSVLWSYRRDKASYIRLPPLDYENPQGPRFTTSPTGRHIAFRIRSAKDLADQHRDSADKTPVYDAVTITLDTLTGQVTGEHPSNTAWRIQLSDSALLDGDTAYNLADGQRRWSIERPRRSTLEPASKSTDYSGPAGHNSFILHYARNGLLGLHSDNVLYGNLVIVSDTDPTKVSDAVSIAVDGRHPAPVVAGGWVAQFTEPIDVQDSEPDKSGQTHEIIAKGIETQAVTLDSLAGLEPKSPVALGRTTGINSFASSATGTLAAYPDYSPDTLPISDIHNRYNKPKVGAVFDPVTRTTTQASQYPGLAAAKAGIAVTTDDGSGTGAIIMQPGDGSQATTIPITPGTTTMSPEALGARSPDALPQLATPDEEKDDSTIFMTAPGLTLVAFDPEAGVGYKTYIKEKEVGYVHRHVHRLYGLTGES

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Crispr_ID: LR134406_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134406_3

381348-381672

TypeIII

Consensus_repeat	Method
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	PILER-CR
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	CRISPRCasFinder
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	CRT

4 spacers

RT,csm3gr7,csx10gr5,cas10,cas6

The CRISPR arrays of LR134406_3

>merge|LR134406|3|381348-381672|PILER-CR,CRISPRCasFinder,CRT
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAACAGAAACTCTTGATGCCACTGATACCTCATTCCCACGTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAACTCCACCAGCACCGGGTAGCTGGCCAACAGTGCGGTGAGTCTGAAGCCACCGCGAACCTCAAAGCGGATTGAAACCCCCAATTAGGCCCAGCCCTACTACCAGGGCAAGTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAACGTCCTGTGTCTACCAGGTAAGCCGCATACACAGGCGTCTGAAACCACCGCGAACCCCAAAGCGAATTGGGTA

>LR134406|3|2|381348-381600|PILER-CR
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	AGAAACTCTTGATGCCACTGATACCTCATTCCCAC
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	TCCACCAGCACCGGGTAGCTGGCCAACAGTGCGGTGA
GTCTGAAGCCACCGCGAACCTCAAAGCGGATTGAAAC	CCCCAATTAGGCCCAGCCCTACTACCAGGGCAA
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC

>LR134406|3|2|381348-381672|CRISPRCasFinder
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	AGAAACTCTTGATGCCACTGATACCTCATTCCCAC
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	TCCACCAGCACCGGGTAGCTGGCCAACAGTGCGGTGA
GTCTGAAGCCACCGCGAACCTCAAAGCGGATTGAAAC	CCCCAATTAGGCCCAGCCCTACTACCAGGGCAA
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	GTCCTGTGTCTACCAGGTAAGCCGCATACACAGGC
GTCTGAAACCACCGCGAACCCCAAAGCGAATTGGGTA

>LR134406|3|1|381348-381672|CRT
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	AGAAACTCTTGATGCCACTGATACCTCATTCCCAC
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	TCCACCAGCACCGGGTAGCTGGCCAACAGTGCGGTGA
GTCTGAAGCCACCGCGAACCTCAAAGCGGATTGAAAC	CCCCAATTAGGCCCAGCCCTACTACCAGGGCAA
GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC	GTCCTGTGTCTACCAGGTAAGCCGCATACACAGGC
GTCTGAAACCACCGCGAACCCCAAAGCGAATTGGGTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134406.1\|VEH69077.1\|374752_375379_+\|RAMP-superfamily	csm3gr7	cls000184_csm3gr7_CAS-III-D	gnl\|CDD\|187857
LR134406.1\|VEH69072.1\|366162_367530_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69084.1\|383102_383564_+\|putative-endoribonuclease-L-PSP	unknown	unknown	gnl\|CDD\|100006
LR134406.1\|VEH69078.1\|375375_376572_+\|CRISPR-associated-RAMP-protein,-Csx10-family	csx10gr5	cls000715_csx10gr5_CAS-III-D	gnl\|CDD\|187879
LR134406.1\|VEH69090.1\|388131_390156_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|378373
LR134406.1\|VEH69083.1\|382941_383106_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379366
LR134406.1\|VEH69082.1\|382288_382573_+\|Transcription-factor-WhiB	unknown	unknown	gnl\|CDD\|376791
LR134406.1\|VEH69088.1\|385973_386786_+\|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component	unknown	unknown	gnl\|CDD\|378925
LR134406.1\|VEH69076.1\|373241_374756_+\|CRISPR-associated-protein-Cas10/Cmr2,-subtype-III-B	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|187810
LR134406.1\|VEH69079.1\|376573_377890_+\|CRISPR-associated-RAMP-protein,-SSO1426-family	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187814
LR134406.1\|VEH69073.1\|367965_369780_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380122
LR134406.1\|VEH69080.1\|377882_378326_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69089.1\|386872_388132_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69081.1\|379203_381057_+\|Group-II-intron-encoded-protein-ltrA	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
LR134406.1\|VEH69087.1\|385188_385956_+\|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA	unknown	unknown	gnl\|CDD\|224054
LR134406.1\|VEH69091.1\|390531_391761_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69074.1\|369782_370736_+\|Uncharacterized-conserved-protein-(DUF2276)	cas6	pfam10040_cas6_CAS-III:CAS-IV	unknown
LR134406.1\|VEH69086.1\|384156_384780_+\|putative-NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239518
LR134406.1\|VEH69085.1\|383560_384178_+\|UV-endonuclease	unknown	unknown	gnl\|CDD\|223255
LR134406.1\|VEH69075.1\|370728_373230_+\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902

Protein	Function_ID	Function_description	E-value
LR134406.1\|VEH69077.1\|374752_375379_+\|RAMP-superfamily	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	1.00025e-13
LR134406.1\|VEH69084.1\|383102_383564_+\|putative-endoribonuclease-L-PSP	gnl\|CDD\|100006	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	9.13867e-58
LR134406.1\|VEH69090.1\|388131_390156_-\|Uncharacterised-protein	gnl\|CDD\|378373	pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00213993
LR134406.1\|VEH69078.1\|375375_376572_+\|CRISPR-associated-RAMP-protein,-Csx10-family	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	5.16411e-06
LR134406.1\|VEH69083.1\|382941_383106_+\|Uncharacterised-protein	gnl\|CDD\|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	0.000471589
LR134406.1\|VEH69082.1\|382288_382573_+\|Transcription-factor-WhiB	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	2.6144e-22
LR134406.1\|VEH69088.1\|385973_386786_+\|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.34468e-07
LR134406.1\|VEH69073.1\|367965_369780_+\|Uncharacterised-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	2.38977e-05
LR134406.1\|VEH69079.1\|376573_377890_+\|CRISPR-associated-RAMP-protein,-SSO1426-family	gnl\|CDD\|187814	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.12595e-08
LR134406.1\|VEH69076.1\|373241_374756_+\|CRISPR-associated-protein-Cas10/Cmr2,-subtype-III-B	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	9.18583e-10
LR134406.1\|VEH69081.1\|379203_381057_+\|Group-II-intron-encoded-protein-ltrA	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	4.92381e-53
LR134406.1\|VEH69087.1\|385188_385956_+\|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.21723e-78
LR134406.1\|VEH69086.1\|384156_384780_+\|putative-NUDIX-hydrolase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	1.26947e-47
LR134406.1\|VEH69085.1\|383560_384178_+\|UV-endonuclease	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	6.23649e-100
LR134406.1\|VEH69075.1\|370728_373230_+\|CRISPR-associated-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.41592e-46

>LR134406.1|VEH69081.1|379203_381057_+|Group-II-intron-encoded-protein-ltrA
MTTDNLLLEEEKVVECFTLPALRCAWERVLKKDAQDGDISDSVERFAEGVQERLEELTEELRAGTFWPSDLTRVVIPKKNGERFLDIPSVRDRIVERAILEHINPAIDPLFGATAFGYRPGLGVADAAQEVVRLREEGYTHVLRTDMHDCFPSLPVALLRRQLEFLIAEPEILVVVDLLLDRCTRFPGKGRGVFPGLPQGSPLSPLLANLALIPLDEALVDAGFPVVRYADDLVIALEEPGDAPEALRTATKVLKELGMELGAEKTAVASFFEGFAFLGEDFGPRYPPAEGEGRIREPDKKILYVAKQGSRIQVRKGRVQVIQDDHELLSVPVSDISRMVCFGSVGVTAGARNWALQNGVDVLLASRGGGLHRTIETTPKRCTERRPIVPVHDSPRRMRDRLAGHRTGPGHGCPARRPRHPPQPGPRPDGGVPPTRGGPRRGDGGPQTRSHRVARPGGGGQGRDFPHRGGTGTDAGRLRTQNTHMRGRGVGRLPLHQTRPPVPTGPAATRSHHGPRTEMDGTGMAMMHLAAYDVHEDQRRAQFSALLQAYGDRIQYSVFLLGITPEELVEIQSRAAGIIDENTDSLWIVRQCAACWEEARTLGQAHPPARVLHYTVM
>LR134406.1|VEH69080.1|377882_378326_+|Uncharacterised-protein
MPEQKRTTETRYLSGQGEVEWSQLRKEAGELTCAWADYEGFHIGPCPDEAPPYSHIWGWSRDGEVLLRGRIDAGRVIAGWLRKTPGGGKKEKEVPTVTRQVITWKPDHERLKINFTGEKANWPEKMQSVEVLGENPVTFIKEEKERS
>LR134406.1|VEH69079.1|376573_377890_+|CRISPR-associated-RAMP-protein,-SSO1426-family
MILTYIRVTIRPLGPWRVGAVGQDQAALETLRDNAGRPALPPSSLAGSFRAGIDEAARELLMGQEKMKDGKPDFRASTLWFLGTRLTGGEDGQPEIRRRTATAVDRNRRAARNYGSHDVEEVYDTETIQLYLRHEGDPAKALQLLGRWQVTIGGGISTGLGRAKVTAISYRTLDLSQPADLLARVSLRDAGPDALDELLQGGAKHKVTAEESPTLLKATIRIDGLNLPTQNLKDQLRPEDHWFHGTRWKGILRGRVEYIGRSLGLDVCGAEDQQWRGCGRCSVCEVFGSGETGVGRWSFHFTPLKPDHPAGRTRNAIDRFTGGVAEKKLFPERTVTSRARLVIGQLSGVETHHAWVLKALLLALRDLQEGYLGIGGRTSTGLGSVRFEKLRLGEEFQRFGMAATTPEAVEGITEAEIELERTHRSLKEKEEKEEMQHA
>LR134406.1|VEH69078.1|375375_376572_+|CRISPR-associated-RAMP-protein,-Csx10-family
MSWWRVTVTSEQAIVVGTGATRAFHTPSLGYIPGSTLRGALATAWRIRYGDPDPAFRKTFDHSVRFGPLLAVTGDVASQSVLRRKYAPGDGEYVDCAFEDAGDAVGEHLKGDVIWGDKNALKVVTTTAIDPEKRTALDGNLFSREAHRRRQTYHGLIHGDENLVGRLVELESASIGGRRSVMGRARIRIEPTPPPELPASGDVVLRTLSPTIRLNEAGAPTLEWKGMKTFEGFEVVDAWGGRVAGEGISGWHMASGTPKPGDIAIAPGAVVKLREPDRDKVLELLERGLGTRRAEGFGWLEQVTKPWRPPGGKPGEEQTGEVATPDLDAMLGWPLEDRRAVAGWLQELREGDDTKTLEGRRAWLNLTEGRRAAARRVIRDTPQAQRNVWASRLREGRN
>LR134406.1|VEH69077.1|374752_375379_+|RAMP-superfamily
MTTTKTTIELDIRFNTAFRISQGYGQGEVDDVIDEENPLPATSLKGVMRDAARMVLPGKRQGDKYVDHHLVDAVFGKRGSDSSPWNFSDGKLDHTDDPRERIRVRSRVAIDEQRRARAGALLFAEELHADRATATISLTQPLPPEELDTHVALLHVAARLVDGIGADRRRGLGWVSITTDADDIEAMVDRIERARNGQAGNEQVRSES
>LR134406.1|VEH69076.1|373241_374756_+|CRISPR-associated-protein-Cas10/Cmr2,-subtype-III-B
MTCFASIGVKQIQGYLARSRRLWGRRGASDMLAYLTDTTGAADRIEERSFETAGEILQGFPGVTVNDDAVDVDSVLNIRGEDPGEVRKATEALALNIKLHLPAAHVHTTFRKAAGYGDVIRAEDEDIPAETRQYPPSMIEFPLAHHCDECSSGMAAEETSVGEETTRLCGDCASRAPRSGRNRLLNWSLLGGVQQGFMVEQVMLRELRKQEKFGNLTQVEHFKELAQLGDLGSEGSRTHTSNHVATIFADGNGFGKLFRELRVAAADSEGGLQELRRVSKAVKDATKQALRKAIEEITDDRVAASNRMPAVPHILGGDDVLVTVPATKAWPFLIAFLKHLEQESGSDTFGLGAGKVSFSAGMVICKLAYPIGDQVELATALLRTAKEAVRGNDWSFAWLDVTNEGPKPPRRFLTLDDWGRIEELRDLARRLGDDERGNAARATLRQELRIRDEKDRTLHLRHRAGRLPGVADLLNAVFGRNWERATNQGAEELLTVLNIMRWYA
>LR134406.1|VEH69075.1|370728_373230_+|CRISPR-associated-protein
MNEYAYVEEIDEDHVRVWPLTDSELTWNGEKVLTRKDGFTLEIEMCLGYEKGNPGYYLVETDELPEVCMLESPISGTSVGSKRSKTWRKELWIPEGSGGLEGALRDKAYSHDFDLLEVEPKRLCWGGEGLGRWIETAKEEVERKAARKKAGEIREKLKEFHDGGKAFINPYTFVPLPDKVKRDKPHGHARAVEGGLTGYLDVEFAFRSPLMMPVDWNTPGETTVTGTRIEERVTVPGSSVRGAVRSLFEVISSSCLSILDPDYRPAHRASLEMRPDKRLAVVDEVDSDGKVISVLPTSKVVWIRAEALWHLFGGAAGLRSGVRISLDENAIYERSFGGDKGKPVKREQLKPEGEPTLKKGGDWVVHVADAGTKGDHPADHIYVAVGKLETTPIRLGEMTWEDYRELCRYSVDVTGGGLAPSAPAWDAEEWSGVAVMVKHTDRSRGNRETAIGKRRKSDGALAPGDSVWITTRSEGGERVVTGLTMSSSWRELGKGPIRNRLPDESLLPCRDPDELCPACATFGFIEARAEGQRRDQAEHNAYASHLRFGAFETDAPVPLRLVLPPPTRSPRPSAGAFYLEHLTAEGENREAGVAELGKPASRWGGQLDSSGMRRIAGRKFYWHGQEPKDTTLTPRQVRRAHYPKEGAPDCQETMRWITEGTPVLKGRIHFENIDARQLGLLMLALEPRELAKRAGITVNGELATHLGGGKGLGFGTAVGRITATCIQDAAGRYRAGAGKVEVDPWGAAMQVIDPDVPWITGLVKALGTESVPADRIWYPTMGNFTQRDSDVQQKKFDKSFEYYARFSGGKDKKTRMRTLPRIDDPIQYMSNEN
>LR134406.1|VEH69074.1|369782_370736_+|Uncharacterized-conserved-protein-(DUF2276)
MESPRSLPAVRVRIWQVLLRAETGERHLTPTPSGIHAMVSSWLHRSPGGGDGEPHSEEHRYAVRWRQVSEFAVLVELRLFDDFLTPLLVDRVAFGNRERLGMVTLRVEGIQEVASVNLAGIAGRPSKGWRLRFPEGVTFKRGDVFMPWPDPYLLLGSIQRRLALICGRDRDEQRLPREVMASVFPTQVELQSVRWTEGDPSRASLRDVRVVLGEVDWLCTGDAASSSLIDRLLQVGELTGIGARTAWGAGVLEIADRVPMRAIATGNKRRSRRVPSRPSGIGRTGRTPFPRFAGESGEWGFGDERPGGSLDRRFGSE
>LR134406.1|VEH69073.1|367965_369780_+|Uncharacterised-protein
MTSSRPPGRGNGPVFISYHQKSGTADAEFIETYLRAGGIVPWRDIRDLEAGTVERNITQAFEEGLSGGVLLLSDGISESSFVPKTEAPLLVGAHKADPEGFQLHIINTFRKPGSLDECDFKAPGKQLGTKYPEAEQLNDHLQRRLLHSDDKGGKPVSELNLVLRDLLRNRLKVRRPQLDDGEIEIGLQTRPEPNHLPADGRTLPEADLHIRLRQDNATQIPEELDYRCLQQALPVLIDELHAARIRRVLFRGGCHPSLAWALGAALPHAREIEHFTWRDTYGKDWVSADEPEEHSTSIHLETLNPDGSRRALGFAPGEIPSGAELRRVLWGDAPAKNAVVLLAADDLRPQPLLALAEKLEDPAVLVINLHTPSADGAKKWIDHTEGAGLARRAGEILRRLRDLAKLHLAVSAPAAMAALTARWCNTLTIDFYELGNTGMGAREYIRVLRTESGNKSPITGVFPQGVPQVDEVRKLINLTPHDVTYYPEAGEPFTWAAPEGPDQWVRRQEQSEELPSLRVQGREIPVTRIRQGAIAPEPDPMPGVGYIVPRISAETARRPDFFFPHGEVRGQGGGIIGCRRLGCFEAVSNRVRPYLELLDPVPQD
>LR134406.1|VEH69072.1|366162_367530_+|Uncharacterised-protein
MSETDKQIVIEALGGGPVQVGTGGPAPAGNVTLPLRTVVVVVNPAEPEEAPCCLVADVDESQEELADLYGGATAGLASRAAEWDGPGRVGKLPLAPDDEDMAGAVARLGVVRWLQEWSPLPLDWRLLRLEELTLVASLTGRLADEPDRLPELAELCRYFHDHIDEEEFAPLTGLLGDALEQVANRFPLSGESGDWARQLLATWPPGEETTSPGRLDVELIGRFTPELALAAGPERWGKLAESATVDWEQLPRGWVATGENNARWVLDLDVEGKIHCAVAVDGPQEVRWFGGVSWGRELNEDDRLGFDLFSGDVPEPVLSGELGYDPRTRGWAGSVTGTAVQTARLKQGREAGAGRSLRVRRDTTLRETFAPVAAAARRWSVRGVSALRLLTAADDRDLRAGAVAALTEAASCWDAAGWKRDAEACRGLLRKVGSGEWKDWVGLTVAEQWLLHPRS
>LR134406.1|VEH69082.1|382288_382573_+|Transcription-factor-WhiB
MSLGELGEWTLRAKCRDMEDVLFPESKDQRRVRNICMSCPVRMECLAEALDNRVQWGVWGGMTERERRRLLRSRPDITSWREVLLTYGRLEEAS
>LR134406.1|VEH69083.1|382941_383106_+|Uncharacterised-protein
MTKWEYLTAPILSHVSQQILNNFGAEGWELVTVAPGPTPETMVGYFKRPLEEGR
>LR134406.1|VEH69084.1|383102_383564_+|putative-endoribonuclease-L-PSP
MSTPTQRLAELGLTLPPVAKPLAAYTPAITVGNQVWVSGQLPLRDGKLVATGRLGDAVEPAEGAEAAKVAALNALAAVADQAGGLDNVARILKAVVFVASTTDFTAQPQVANGASELLGEVFGTPHVRSAVGVAVLPIDAPVEVELVAELAAR
>LR134406.1|VEH69085.1|383560_384178_+|UV-endonuclease
MTAALIGSRLAAAYPDARCDLDHRSPFELLVAVVLSAQTTDARVNQVTPELFARYPDAEHLAGAEQDDVEEIISSLGLYRSKARSLTGLARALVADHDGRVPDSLDELVKLPGVGRKTANVVLGDAFGIPGITPDTHVIRVSNRLGWVHSTKPDDVERAVGALFPPGEWVVLCHRIIWHGRRCCRARTPACTACPVEDLCPSSQA
>LR134406.1|VEH69086.1|384156_384780_+|putative-NUDIX-hydrolase
MSQLSGLTAALRDGAAGPLGQFGRAPDYARPAAVLILLTDEPDPAVLFTERAGGLRAHAGQISFPGGGAETGETPVATALREACEEVGLDAGLVTVLGQLPTAWVPASGYEVTPVVARWSEPLPLAPVDPGEVANVLQLRISQLSDPATRVTATVPGGYRGPGFQLGDLFIWGMTAHLLDVTLRVAGWEQSWDRDREVPVPGRFLRD
>LR134406.1|VEH69087.1|385188_385956_+|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA
MTTAISFQNVTKDYATSKGIVRALRGLDLEIPQGVIYGLLGPNGAGKTTALEIAVGLREATGGLARTMGLDPVRENAEVRNRISIQPQNATGFDLLTGEELLDIWSALYPNPRPAEELIRLLDMSGYIDRQLRRLSGGQRQRVNLALALICGVNVTVLDEPSTGLDPMARADLWDALRHLKQEGMTIILSTHDMEEAEVLCDHLAIIDAGAVVAEGSPSELIADAERRHQGPDRFRGLTDVFFQAAGRSFHQQNK
>LR134406.1|VEH69088.1|385973_386786_+|ABC-type-transport-system-involved-in-multi-copper-enzyme-maturation,-permease-component
MSTLSITRPLTAANQEIAMPTASVTRKLFKLHWLELTRNRAQFIFAMVFPLFMGGMFFLISTVMPSSTAANFGAMILPMSGYLALSGVALNLTAGPLVQYREQGTFRVLGTTPLSRTRFLLTHLFLRVVFAMALCAALYLLGAAIGLADWAAIPALTAASLPALLMFLAIGYWLGGVMTSSQATSSVSAFLQVGFLFISGAGIPMWLLPETFQQVISWLPPALSVDPLFWAANSPFQRHDPWLTSGITIVLAALVMLAAIRTFRWEVRSR
>LR134406.1|VEH69089.1|386872_388132_-|Uncharacterised-protein
MKTWNTVLRLSAALFLVLLPLGSCAPAGNRDNSPAPPFSLNLKDAGNSYSPFTASTVKGSGWNLGASVSIDNSRSVHSTPFGIIIVLNTYYPLDTSSKNDDSQATKILCLDPANGSLKWARILEPASSEIGRSDTGTAQDLFRRDSSPGNPGPVVTSPNGHHLAIMVKPYLVSGSSSDVSDQRMRIVVIDTETGDATRTFEVSGLVLGQVLTNDSLVVETSQHFYPAGTGTLNVFSLTEAQAGPTSFRTDRWLVGATSDSLLVSSQNLRKYDRLPTTLTRISTSGEELGTVAGVTAVRDGSWVFRYQDPEAATAAIKAGSKDVLPKELFNIDSGAAFDITDLDVVSAGLSTGPGFLLRRLVPGENDEQKPFYVPVSWLPAAPDSRELRTDDVAWFDEGDYKKQEGRYIMRAVRMGEKPG
>LR134406.1|VEH69090.1|388131_390156_-|Uncharacterised-protein
MAPTPDDAVTTADPPPRFVPGLRDLRLAGLGVVAASALLVIPFWGDVTLLLPTVTPHLLVLAAFPVFWLLAAWLGSRRIIPAVIVTVGSIAAAGFHCRRWWVVHEQSSIRLGLLLVMAVVSLGLGLFAVSDLLLRGIRDGMDPRPETPDDPARFRPLPRDPAPPSAVIRRLASILCPAIALVVAVLLVHTLANPTSQVTASPPSGDLPARPTRIGTTPAWEKDVPGLLEMAAGAAGPVLFTGEGLTALNPADGSVLWSYRRDKASYIRLPPLDYENPQGPRFTTSPTGRHIAFRIRSAKDLADQHRDSADKTPVYDAVTITLDTLTGQVTGEHPSNTAWRIQLSDSALLDGDTAYNLADGQRRWSIERPRRSTLEPASKSTDYSGPAGHNSFILHYARNGLLGLHSDNVLYGNLVIVSDTDPTKVSDAVSIAVDGRHPAPVVAGGWVAQFTEPIDVQDSEPDKSGQTHEIIAKGIETQAVTLDSLAGLEPKSPVALGRTTGINSFASSATGTLAAYPDYSPDTLPISDIHNRYNKPKVGAVFDPVTRTTTQASQYPGLAAAKAGIAVTTDDGSGTGAIIMQPGDGSQATTIPITPGTTTMSPEALGARSPDALPQLATPDEEKDDSTIFMTAPGLTLVAFDPEAGVGYKTYIKEKEVGYVHRHVHRLYGLTGES
>LR134406.1|VEH69091.1|390531_391761_-|Uncharacterised-protein
MKLTHLLLGALLTLPLSASTQPPSGAELPVSIAEANPSTLVEAPTPTRNGWEVVVLGHRRLSSDTVSKILAATSSGPVLSIDTSPRGNNDSKDRKTHPATMLVALKPEDGSVRWARIIEPATKDFSESELPLTPQVAYEQGRRSVGNSIVASPDGTRLAVPLLSHMRPADSTKISDQRTKVVVLDAATGNEVRTVEVAGMVLGHALTGDCLVVETAENYYPAGTGTLNVFPLGEPAAEPVTFRTDLWLAGATANSLLMSPQFDKEKTSFRPTGRSRTFTRISTSGEELGTVTGVSDLHPGGWLERFKDPDAAQALIAQNLDELSLAEQLEKLPRELVNADSGAVVDLTGASPRDVVTSSGWGIFLKPAIQPIEREAVPWLNTTAGDQTPRKEFLNYFKEEGYAVHYAPI

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Crispr_ID: LR134406_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134406_5

467301-467380

Orphan

Consensus_repeat	Method
GAGCAGCCCGTGTCGAAACCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134406_5

>merge|LR134406|5|467301-467380|CRISPRCasFinder
GAGCAGCCCGTGTCGAAACCATCCTGCACCAGCTGGTTGAGCCGGGCTGCGATGAAGGAGCAGCCCGTGTCGAAGCCATC

>LR134406|5|4|467301-467380|CRISPRCasFinder
GAGCAGCCCGTGTCGAAACCATC	CTGCACCAGCTGGTTGAGCCGGGCTGCGATGAAG
GAGCAGCCCGTGTCGAAGCCATC

Protein	Signature genes	Signature genes Name	Protein_function
LR134406.1\|VEH69153.1\|461342_461666_+\|Lsr2	unknown	unknown	gnl\|CDD\|378714
LR134406.1\|VEH69161.1\|471457_472267_+\|fructoselysine-3-epimerase	unknown	unknown	gnl\|CDD\|224007
LR134406.1\|VEH69160.1\|470666_471398_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379203
LR134406.1\|VEH69165.1\|475612_476632_+\|Aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
LR134406.1\|VEH69159.1\|469028_470432_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
LR134406.1\|VEH69156.1\|466522_466990_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69155.1\|465380_466442_-\|DNA-integrity-scanning-protein-DisA	unknown	unknown	gnl\|CDD\|237395
LR134406.1\|VEH69167.1\|477861_479442_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|376850
LR134406.1\|VEH69149.1\|458803_459172_+\|Probable-dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
LR134406.1\|VEH69162.1\|472266_473175_+\|Proline-dehydrogenase-1	unknown	unknown	gnl\|CDD\|376577
LR134406.1\|VEH69158.1\|467834_468863_+\|Transposase-and-inactivated-derivatives,-IS30-family	unknown	unknown	gnl\|CDD\|225382
LR134406.1\|VEH69150.1\|459152_459716_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase	unknown	unknown	gnl\|CDD\|223872
LR134406.1\|VEH69157.1\|466986_467274_+\|Helix-turn-helix-domain	unknown	unknown	gnl\|CDD\|316153
LR134406.1\|VEH69152.1\|460306_460966_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
LR134406.1\|VEH69164.1\|474752_475523_+\|CAAX-amino-terminal-protease-self--immunity	unknown	unknown	gnl\|CDD\|376806
LR134406.1\|VEH69166.1\|476628_477411_+\|Pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
LR134406.1\|VEH69151.1\|459712_460210_+\|Protein-of-uncharacterised-function-(DUF3180)	unknown	unknown	gnl\|CDD\|378650
LR134406.1\|VEH69154.1\|462519_465015_+\|Probable-ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|214361
LR134406.1\|VEH69163.1\|473287_474646_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69148.1\|457929_458730_+\|Dihydropteroate-synthase-1	unknown	unknown	gnl\|CDD\|238380

Protein	Function_ID	Function_description	E-value
LR134406.1\|VEH69153.1\|461342_461666_+\|Lsr2	gnl\|CDD\|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	5.89755e-45
LR134406.1\|VEH69161.1\|471457_472267_+\|fructoselysine-3-epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.15333e-25
LR134406.1\|VEH69160.1\|470666_471398_-\|Uncharacterised-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	3.24824e-32
LR134406.1\|VEH69165.1\|475612_476632_+\|Aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
LR134406.1\|VEH69154.1\|462519_465015_+\|Probable-ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|214361	CHL00095, clpC, Clp protease ATP binding subunit.	0
LR134406.1\|VEH69155.1\|465380_466442_-\|DNA-integrity-scanning-protein-DisA	gnl\|CDD\|237395	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional.	1.81e-133
LR134406.1\|VEH69167.1\|477861_479442_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|376850	pfam02602, HEM4, Uroporphyrinogen-III synthase HemD. This family consists of uroporphyrinogen-III synthase HemD EC:4.2.1.75 also known as Hydroxymethylbilane hydrolyase (cyclizing) from eukaryotes, bacteria and archaea. This enzyme catalyzes the reaction: Hydroxymethylbilane <=> uroporphyrinogen-III + H(2)O. Some members of this family are multi-functional proteins possessing other enzyme activities related to porphyrin biosynthesis, such as HemD with pfam00590, however the aligned region corresponds with the uroporphyrinogen-III synthase EC:4.2.1.75 activity only. Uroporphyrinogen-III synthase is the fourth enzyme in the heme pathway. Mutant forms of the Uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria in humans a recessive inborn error of metabolism also known as Gunther disease.	3.01685e-52
LR134406.1\|VEH69149.1\|458803_459172_+\|Probable-dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	2.81276e-42
LR134406.1\|VEH69162.1\|472266_473175_+\|Proline-dehydrogenase-1	gnl\|CDD\|376577	pfam01619, Pro_dh, Proline dehydrogenase.	8.32412e-14
LR134406.1\|VEH69158.1\|467834_468863_+\|Transposase-and-inactivated-derivatives,-IS30-family	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	5.73355e-97
LR134406.1\|VEH69150.1\|459152_459716_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	5.35764e-52
LR134406.1\|VEH69157.1\|466986_467274_+\|Helix-turn-helix-domain	gnl\|CDD\|316153	pfam13601, HTH_34, Winged helix DNA-binding domain.	1.05795e-17
LR134406.1\|VEH69152.1\|460306_460966_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.90217e-05
LR134406.1\|VEH69164.1\|474752_475523_+\|CAAX-amino-terminal-protease-self--immunity	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	9.38956e-15
LR134406.1\|VEH69166.1\|476628_477411_+\|Pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.85656e-98
LR134406.1\|VEH69151.1\|459712_460210_+\|Protein-of-uncharacterised-function-(DUF3180)	gnl\|CDD\|378650	pfam11377, DUF3180, Protein of unknown function (DUF3180). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	2.20731e-14
LR134406.1\|VEH69159.1\|469028_470432_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
LR134406.1\|VEH69148.1\|457929_458730_+\|Dihydropteroate-synthase-1	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	5.14763e-111

>LR134406.1|VEH69157.1|466986_467274_+|Helix-turn-helix-domain
MSNFDETIHSPNRLRICAALSAARQVEFATLEQGLGVSKSLLSKQLKVLIDAGYVTLERKPQPFGRPRTWVGLTPAGRKAYRNHVAALRKIIEEN
>LR134406.1|VEH69156.1|466522_466990_+|Uncharacterised-protein
MVEHMETNSPDRESAAHLLELADDARAATMHAAALPWWLFALEGVCAGICCGALVAQAWVVAALGIGGMLVGVLLLHWRTRARGQHLGSFWVASTVILMSGFVPGLLREAAVSQPWISVGYGVFSSVVFYVVLLLDERRRNRRFAEGRFEEYDIW
>LR134406.1|VEH69155.1|465380_466442_-|DNA-integrity-scanning-protein-DisA
MKRDRLRQYQRRLAPGTPLRAGLDRILHGRTGALVVLGNNPKVQQVSTGGFRLDVEFTPQALRELAKLDGAIILSNDLSRIIAAGVHLVPAGDLPTAETGTRHRSADRTAQASGVPVVTVSASMSTISLFMDGDRHVVETSGQMISRANQTLATLSRFVDRLGSILHQFNALEVGEQVTIRDLVLVAQRFEMTRRLSAEAQFHIDTLGVEGRLIALQHAELVGEFTGLDEQLRTDYAHNLADPSLFTLEPLHNFSAEELLSSQLVAERIGFGESPYLETPIHTRGARLLISVGRLSEGMTTKLINRFSLQELFSVSVSELQQLEGIGSARARLIRDALLRITEAAYARPQTPV
>LR134406.1|VEH69154.1|462519_465015_+|Probable-ATP-dependent-Clp-protease-ATP-binding-subunit
MFERFTDRARRVIVLAQDEAKLLNHNYIGTEHLLLGLIHEGEGVAAKALEQMGISLQAAREQVVEIMGQGQQVPSGHIPFSPRAKRVLELSLREALQMNHNYIGTEHILLGLVREGEGVAAQVLLKLGADLGRVRSTVIQLLAGYQGKEASMAGAPEAGPEKSSSQVLDQFGRNLTQAARENRLDPVIGRVSEIERVMTVLSRRTKNNPVLIGEPGVGKTAVVEGLSQAIVRGDVPETLRDKQIYTLDLGALVAGSRYRGDFEERLKKVLKEIKTRGDIMLFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKHIEKDAALERRFQPIQVAEPSVALTIDILKGLRDRYEAHHRITITDEALTAAATMADRYIQDRFLPDKAIDLIDEAGARLRIQRMTAPPDLREFDEQIAKLKMEKDAAIDAQDFETAARLRDDVTRIQAQRAEKEEAWKQGDSDIPAVVGEEEIAVVLSSSTGIPVFKLTEEESARLLRMEQELGKRYIGQEDAVKALARSIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELTKALTEFLFGDEDALITLDMSEYSEKHTASRMFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHPDIFNSLLQILDEGRLTDAQGRVVDFKNTVIVMTTNLGSRDISKGVNLGFSRAGDEASSYEKMKAKVSDELKQHFRPEFLNRVDEIVVFHQLTQSDIERIVDLMVAQIESRLADRDMGIELTPAAKTLVAKRGFDPVLGARPLRRALQRDIEDVLAEKILFGELVAGQIVQVDVAEEGAELPFKFTGISKTPPALPAEAGPVE
>LR134406.1|VEH69153.1|461342_461666_+|Lsr2
MAREVQIFLKDDIDGSVADRNVTFALDGVEYEIDLSEANITKLVQALEPWTGSARRVRKSSKRNTQRRSNDGPSTNDVRNWARAQGHEVSDRGRIPTAIMAAYEAAH
>LR134406.1|VEH69152.1|460306_460966_+|chromosome-segregation-protein-SMC
MSGRHVAKSSSERSIAIGILSVGSLVVLGSLFGGIWVVRAGAVVALLMAVAAVSVAWMELKRERAEHREEIKRQVAIRVEQAERHHAESVAMIDRFNERAQNLKSMIAKLRRQLGAANSELSTMRGNSAWLRGEVAERQSRIDALEAKIAELEERLVAEEEARQEIEESSNIVELPRYAKGEEAIELWISDDEHPTMVDLAKLNMAHYDEPLLPVRKEA
>LR134406.1|VEH69151.1|459712_460210_+|Protein-of-uncharacterised-function-(DUF3180)
MTRKPELTPTTGRQVVVATLAGAVVGWMILSIFDLLNVFPPVAPWSLSVLLVLLGVAAIVYARALPKRLEQRRVPALEAVRAMVMAKSLIATGALLAGGHAVYVGRWVALMAAELPATRVWHGLATIVAAAFCAWGGWVLERACMIDGDGSDAESGEDQEASEAA
>LR134406.1|VEH69150.1|459152_459716_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase
MSNGPFDIDVDTLGNMRPISKVVFSFGSNQGDSPAILTRAVEVLAETPDLIVVDVSPVYQTPFQGDGPEQDDYLNLVVLAESTLEPMTLLDRAFAIEESFGRERTVPNGPRTLDIDIIMVGKRTSEEDIELPHPRAHERAFVLVPWLDIDPTGEIAGAGPIAELVKHVDRTGVIRRDDIVIANPGRR
>LR134406.1|VEH69149.1|458803_459172_+|Probable-dihydroneopterin-aldolase
MDAISITGLTATGFHGVFPEERLNGQRFVVDVELGLHVETRSDELSDTVDYAGIADLIRAEIEGEPCRLIETLAGRIADRCLSNSLVQQVRVTVHKPQAPVPHELSDLSVTITRSSHEQRSL
>LR134406.1|VEH69148.1|457929_458730_+|Dihydropteroate-synthase-1
MTIVMGVLNVTPDSFSDGGRHDDAETAVAHGRLLASQGAGIVDVGGESTRPGAARVPEAEEMARVIPVIAALAAHGITCSVDTMRASVARAAVAAGARIVNDVSGGLADPGMLGAVADLGVDYVAMHWRGHSEVMQQHTDYTDVVADVAAELAARRDAALAAGIAAERIILDPGIGFAKTSEQNWQLLRGLDVLQAMGHRLLVGVSRKRFLGELLDGRPATDRDAATAAVTTWCSLHGIWAVRTHEVPAQRDAARVGWRLGARAAG
>LR134406.1|VEH69158.1|467834_468863_+|Transposase-and-inactivated-derivatives,-IS30-family
MLEVGEPAQWRDGQGRLTLAGRILIEVRVGDRVPPSQIAAELGVHRSTVSREMKRCPGRYRAQPAQRLADWSRRRPKDRKLVLGTPLWDEVVTRLNNKHSPQQIAHRLRQDFPEDPTMWVSHETIYQALYVQAAGGLRHELTVEKALRSGRTTRGPRSRLSGRGSRSWIGEATITNRPAEVEDRAVPGHWEGDLIIGKGGTSALVTLNERTTRYTMIQRVTSRDSTTVTDALIQMARRLPATLMTTLTWDQGIEMAQHARFTLASGCQAYFCDPHSPWQRPTNENSNGLIRDFFPKGTDFTHITDTQVQHAEDLLNTRPRRVLDWATPAEKMEQLLNVAHTT
>LR134406.1|VEH69159.1|469028_470432_+|DNA-repair-protein-RadA
MAKQDSFQCTECGWTTARWVGRCGECQAWGSVVERGAPKLAKVAAAAPSRSAQRISQVPTDDARRKRTGIEELDRVLGDGLVPGAVVLLAGEPGVGKSTLLIDVAAKWAGTGETTLYISGEESASQVKLRAARTGAVHDDLFLASENDLATVLGHVEEVSPSLLIVDSVQTISATGADGTPGGPAQVREVTAALARVAKNRNMAVLIVGHVTKDGSIAGPRTMEHLVDVVLSFEGDRHSGFRMVRATKNRFGPADEVGCFEMSETGIVEVPDPSGLFTTVRSAPVPGTCVTVTLQGRRPLLAEVQALVAPTPGNSPKRATHGLDSSRIAMVLAVLERKARLPLSQSDVYTSTVGGAKVTDPSVDLAVAVAVASAALDRQHPQRLLALGEVGLAGDLRRVPGTERRLAEAARLGFELALVPRGSRDVTVKVPRLAGLKVVEVDTLADALGILDLRRPASVPPRDEETT
>LR134406.1|VEH69160.1|470666_471398_-|Uncharacterised-protein
MLRAFTHCTPALERITSPGWDMTHRKRQNESMHVDHVIFASGPRGIKADVAHLAGRLGADFKEGGFHPRFGTRNYIIPLADSRYLEVVEVLDHPAAAKAPFGQAVRARSEMGGGWLGWAVSVDDIAPFEERLERSAVPGSRQFPDGRHLEWRQLGIKGLMADPQLPFFLQWVSNKQLRPSFLTSDLRLSGIQISGSANRLSEWLGVPVNDSLDGIHLDLIAPNGHPGITQVTFESPTKGIVVI
>LR134406.1|VEH69161.1|471457_472267_+|fructoselysine-3-epimerase
MSDPAILLSTTSVYPDSTASAFDFAAEVGFDGVELMVGVDQVSLDEEAISELSDRYRVPVRSLHAPTLLITQRAWGSDPWGKLRRSAEAARRLGADIVVVHPPFRWQRDYGEGFAQGIRELNRASGVTFAVENMYPWRTPAGSFAAYLPGWDPTDLDYDHLTLDLSHASTAQQRSLDLVERWGDRLAHVHLTDGKGSFKDDHLLPGEGDQDAWAVVRELGRRGFEGHIVLEASTRRARTGGERAELLRSALENTRENLRLGAGKAVRRD
>LR134406.1|VEH69162.1|472266_473175_+|Proline-dehydrogenase-1
MRRSGDWVRWLVLGSWVARRAARDPGVRELASNYVAGQEVGDAIKVASRLRRQGLRLGFSYLSADHDPEDTRMVMDELLERLQGASDGSEVAVKPSSLGLKESAGRAGEVLGELCATAERRGAHVTLEMQWPADYDDVMDLYRRVREDHPMLGITLPANLLRVETECRRLGAEGARVRLCVGSYPAGRAVSHVTEHDKALALVRCLRILMESRAYPMLATHDPRIIELAQELALRNGRGPESFEYQMFHGVRPLEQRRLADIGLRCRTYIPFGPGWYGYLATRMAARPRILFSYARALLDKR
>LR134406.1|VEH69163.1|473287_474646_+|Uncharacterised-protein
MRMGSGNAGGGGGGVDGRPRFSWPFFLAALGVGAVLVGMVLALSQPPGTGGKPESSTASGCSATPDVVAPSGGSAQWQQEWSFEAGEGKWGGEPGQDRANFWNAYAHGDCLIVISGWKPGEKTRLTGYRIAEDGPKRLWSIEEEQIFAPDANVWWGGKLVLGNRLLDPTTGALGDGPWSGVPAALSNDFALVCKLSLRTVCSGWDWNGGAPTKRWTQEYDGRLSVLTHKGLAGNTDKGAALAELSTDPSAKKAPIVAVSLADGSLLAEWPAVANNQKDQYIPADDGWIHVAPESAEASAVSLTGERTSFPLTGSNAALLVAEKGKPTIEQFRAAYETGDVSWARVVIDCPSSRQCSLNGNPFLLPKHMAYRGVPGRAGYQLAWSMSSDGRNLFMRPHGLDIRRAVCLVDIPGGKDIPLTEGSVTNRGTVAPLMRDDLVIAIEGSSLVGYRPR
>LR134406.1|VEH69164.1|474752_475523_+|CAAX-amino-terminal-protease-self--immunity
MNPGPEVRRRLHLEMLVVLGISLGQSAVYALLSLINKLTQEVALNRQTTSINASKTPDRPWLDLAYQVANLVFPLVPVALVLYLLWVYQRPHGGPLRSMGFDLRRPGFDLGVGSAVFVGIGAGGLVLYYAFRELGYNTSVSPANLAAAWWTVPMLLLLAVKNAVLEEVVMVGYLFTRWRQSGGGILAVLAGSALIRGAYHLYQGFGGFVGNVVMGLLFGWLYLRTRRVMPLVVVHSLLDIFAFVGYALLKPHIPWL
>LR134406.1|VEH69165.1|475612_476632_+|Aspartate-semialdehyde-dehydrogenase
MRVGVFGATGQVGGVMRKLLAERNYPVDEIRYFASERSAGKVLPWGDREVVVEDIAKADFHGIDVALFSAGGGTSKQWAPEVARAGATVIDNSSAWRMDPRVPLIVSQVNPEDVDKAELGIIANPNCTTMAAMPVMKPLHDAAGLEAMQITTFQAVSGSGISGVRTLAEQIRQIDDPQVLAHDGSVLAPSDLGPYVKPIAFNALPQAGSFVDDGEGETDEEKKLRNESRKILHIPGLLVAGTCVRVPVFTGHSLSIHARFSRPITPDEARSLLTGAPGVELSEIPTPLEAAGKDPSYVGRIRRDQSVEDGTGLVLFVSNDNLRKGAALNAIQVAELLVR
>LR134406.1|VEH69166.1|476628_477411_+|Pyrroline-5-carboxylate-reductase
MISVIGAGAMGEALMAGWIAAGTSPDEIVAVDQDTDRLARLRERRGVRSVEVSGVSVAEVVVVAVKPHHVATALTDIAPHLGPEAVVVSVAAGVTLARLTEVLPEGQPVIRVMPNTPALVGRGVAGLAAGPTVTPEQIARVVAMMEAVGICVELPESQFDALTAISGSGPAYLFLIAEAMIEAGVHQGLGRDVATRLVNGTFAGAAAMLEGVDASATELRERVTSPAGTTAAALRVLDERAVRAAFLAAVEACARRSSEL
>LR134406.1|VEH69167.1|477861_479442_+|uroporphyrinogen-III-synthase
MIHTEEPEPTGTPMGVVTFVGFGPGDPGLITWAGSREVTGADLLVVDSPTMVEELASVGIEPLGEVVQVEADEVAQLVAAVSDGRSVVRLVEGDFFTEAGHVDVLRRLLEGKRIRTHLIPGITTWNAALTYGAVAPTSVMGFCDASVELPGKDGWPKRGTVVIRATDESISRVVAEARAVYGETAEVLELTGLGGTSQKTRLTTWGDLGSEPCGGPRFLLFGPGIGDVARARVDWFESKPLFDWSVLVPRTKDEVTELTDHLARFGASTEVVATMSIEPPRTEQAMEKAVRGIVDGRFLWVVFTSQHAVRAIVDRLAEYGLDSRALSGIQLAAVGRGTVEALGRVGLTPDLTPSEGDTAHDLALEFPAYDDLIDPMARVLVPTADVSVADLVQGLTNLGWEVEEVTAYRTVRAAPPPAEIRDRIKTGLFDAVVFTSSSAVRNMIGIAGKPHTTSIIAAIGQATASTCEMHGLRVDVVADSPNFESVAVGLARFADERRADRLAQGLPDTKPSQRRRRRRRDPNRGA

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Crispr_ID: LR134406_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134406_6

658631-660770

Unclear

Consensus_repeat	Method
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	PILER-CR
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CRISPRCasFinder
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CRT

29 spacers

cas2,cas1,cas8u1,cas3,csb2gr5,csb1gr7

The CRISPR arrays of LR134406_6

>merge|LR134406|6|658631-660770|PILER-CR,CRISPRCasFinder,CRT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAACCCTTCCAACCCGGCGCCGTCCTCGAGGCCGCCCACCTGTCGCAATGGAGCCTGACCTTTGAGGTCAGGGAAAGATTGACGCGATTCGGTACGGTCAATCGGGGTAGCGTGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGTGATTTCGCATCGCGTTGAGTGAGGGCCTCCAGCAGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGTCCGACCATTCAATCCGTATCCACCGCCTAGAAACCGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGCGCCCTCCGTCACCCCGGAGGGTCGCTACTGGTGGCTGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGCATCATCGGGGAACTCGACCTGGTCAAAGTCGACGGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGTACTCGGCTACCCCCGAGCGCCGAAAGGCCCGCGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGTTGAGCTGTTGCGGGAATGGACTCGTGGCTGTTACGCGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGCCTACTCCCGCCCCCTGCGGTACCTGCTCAACTAGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGAAGGCGGGGGCCGCGAGGGAGCGGTGGTCGAGCCCGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGAGGTAATGACAATGTGGAAACAGGCCTGAACTGGATTCTGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGCACATCGCCTGTCCAAACTTCCGCCGGAAGGGGCTCCGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGGCCTTGATGCTGCGCACGTCGGACAGCAGGTCCCGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGGTCGGCGGACATACCCATTCCCTGGGCAGTCTTGATGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGCTCACTGGTCCCCCTTGGGGGCGTCGAGGTAGTCGGGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGGGAGTAGTAGGCGAGCAGGGCGTCGGTGACCTCCGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGGGTCGGGACGTCGCGGAGTTGCTTGATCCTGAGCAGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGGACGACGGCACCAAAGCGCATCTGATCCTCGACATGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGGCGGGCCATCACCGCACTCCAAGAAAGGAACACCGCATGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGCCGACGGGTCGCTGGAAGGTAGGGCGGGTCGAGGTAGTCGCAATGGAGCCTGGCCTTTGAGGTCAGGAAAAGGGAAGGAAATGGGCACCACCCTGCCCGGGCAGCTCGAGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGGTGTTGTCGGTCGGCAACTGGTACTTGCCGACGATGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGCAGCACCATGGTTCACCGCCGGGCGGAGGGGCCCACTGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGTTCCTCGGTGCTGCCATGACTCTCATCATCCTTCCCAGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGTGGAGGCTGAAACGATGAAGGAGGTGGGTCTGAAGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGCCACGCCCCATTGTATCTCACCCCAAGGAGTCCCCATGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGGGCGCACGTCAGGATCTCGCCGGGAACCAGTAGCAGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAGCTCCGGCCTGTGGTCCCGCTGGGCCAGCGTGGACTTGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAACATCAGCAGCGATGTGACATACACGGCACCAGCAGGTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG

>LR134406|6|3|658631-660769|PILER-CR
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	CCCTTCCAACCCGGCGCCGTCCTCGAGGCCGCCCACCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGGAAA	GATTGACGCGATTCGGTACGGTCAATCGGGGTAGCGTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GTGATTTCGCATCGCGTTGAGTGAGGGCCTCCAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGTCCGACCATTCAATCCGTATCCACCGCCTAGAAACC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GCGCCCTCCGTCACCCCGGAGGGTCGCTACTGGTGGCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GCATCATCGGGGAACTCGACCTGGTCAAAGTCGACGG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GTACTCGGCTACCCCCGAGCGCCGAAAGGCCCGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GTTGAGCTGTTGCGGGAATGGACTCGTGGCTGTTACGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGCCTACTCCCGCCCCCTGCGGTACCTGCTCAACTA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GAAGGCGGGGGCCGCGAGGGAGCGGTGGTCGAGCCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GAGGTAATGACAATGTGGAAACAGGCCTGAACTGGATTCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GCACATCGCCTGTCCAAACTTCCGCCGGAAGGGGCTCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGGCCTTGATGCTGCGCACGTCGGACAGCAGGTCCCG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGGTCGGCGGACATACCCATTCCCTGGGCAGTCTTGAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGCTCACTGGTCCCCCTTGGGGGCGTCGAGGTAGTCGGG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGGGAGTAGTAGGCGAGCAGGGCGTCGGTGACCTCCG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGGGTCGGGACGTCGCGGAGTTGCTTGATCCTGAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGGACGACGGCACCAAAGCGCATCTGATCCTCGACATG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGGCGGGCCATCACCGCACTCCAAGAAAGGAACACCGCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GCCGACGGGTCGCTGGAAGGTAGGGCGGGTCGAGGTA
GTCGCAATGGAGCCTGGCCTTTGAGGTCAGGAAAA	GGGAAGGAAATGGGCACCACCCTGCCCGGGCAGCTCGA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGGTGTTGTCGGTCGGCAACTGGTACTTGCCGACGAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGCAGCACCATGGTTCACCGCCGGGCGGAGGGGCCCACTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGTTCCTCGGTGCTGCCATGACTCTCATCATCCTTCCCA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGTGGAGGCTGAAACGATGAAGGAGGTGGGTCTGAA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GCCACGCCCCATTGTATCTCACCCCAAGGAGTCCCCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GGGCGCACGTCAGGATCTCGCCGGGAACCAGTAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	GCTCCGGCCTGTGGTCCCGCTGGGCCAGCGTGGACTT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA	CATCAGCAGCGATGTGACATACACGGCACCAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAA

>LR134406|6|5|658631-660770|CRISPRCasFinder
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAC	CCTTCCAACCCGGCGCCGTCCTCGAGGCCGCCCACCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGGAAAG	ATTGACGCGATTCGGTACGGTCAATCGGGGTAGCGTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TGATTTCGCATCGCGTTGAGTGAGGGCCTCCAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTCCGACCATTCAATCCGTATCCACCGCCTAGAAACC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CGCCCTCCGTCACCCCGGAGGGTCGCTACTGGTGGCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CATCATCGGGGAACTCGACCTGGTCAAAGTCGACGG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TACTCGGCTACCCCCGAGCGCCGAAAGGCCCGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TTGAGCTGTTGCGGGAATGGACTCGTGGCTGTTACGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCCTACTCCCGCCCCCTGCGGTACCTGCTCAACTA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	AAGGCGGGGGCCGCGAGGGAGCGGTGGTCGAGCCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	AGGTAATGACAATGTGGAAACAGGCCTGAACTGGATTCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CACATCGCCTGTCCAAACTTCCGCCGGAAGGGGCTCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCCTTGATGCTGCGCACGTCGGACAGCAGGTCCCG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGTCGGCGGACATACCCATTCCCTGGGCAGTCTTGAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCTCACTGGTCCCCCTTGGGGGCGTCGAGGTAGTCGGG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGGAGTAGTAGGCGAGCAGGGCGTCGGTGACCTCCG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGGTCGGGACGTCGCGGAGTTGCTTGATCCTGAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGACGACGGCACCAAAGCGCATCTGATCCTCGACATG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCGGGCCATCACCGCACTCCAAGAAAGGAACACCGCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CCGACGGGTCGCTGGAAGGTAGGGCGGGTCGAGGTA
GTCGCAATGGAGCCTGGCCTTTGAGGTCAGGAAAAG	GGAAGGAAATGGGCACCACCCTGCCCGGGCAGCTCGA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGTGTTGTCGGTCGGCAACTGGTACTTGCCGACGAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCAGCACCATGGTTCACCGCCGGGCGGAGGGGCCCACTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTTCCTCGGTGCTGCCATGACTCTCATCATCCTTCCCA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTGGAGGCTGAAACGATGAAGGAGGTGGGTCTGAA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CCACGCCCCATTGTATCTCACCCCAAGGAGTCCCCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCGCACGTCAGGATCTCGCCGGGAACCAGTAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CTCCGGCCTGTGGTCCCGCTGGGCCAGCGTGGACTT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAC	ATCAGCAGCGATGTGACATACACGGCACCAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG

>LR134406|6|2|658631-660770|CRT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAC	CCTTCCAACCCGGCGCCGTCCTCGAGGCCGCCCACCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGGAAAG	ATTGACGCGATTCGGTACGGTCAATCGGGGTAGCGTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TGATTTCGCATCGCGTTGAGTGAGGGCCTCCAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTCCGACCATTCAATCCGTATCCACCGCCTAGAAACC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CGCCCTCCGTCACCCCGGAGGGTCGCTACTGGTGGCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CATCATCGGGGAACTCGACCTGGTCAAAGTCGACGG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TACTCGGCTACCCCCGAGCGCCGAAAGGCCCGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	TTGAGCTGTTGCGGGAATGGACTCGTGGCTGTTACGC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCCTACTCCCGCCCCCTGCGGTACCTGCTCAACTA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	AAGGCGGGGGCCGCGAGGGAGCGGTGGTCGAGCCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	AGGTAATGACAATGTGGAAACAGGCCTGAACTGGATTCT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CACATCGCCTGTCCAAACTTCCGCCGGAAGGGGCTCC
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCCTTGATGCTGCGCACGTCGGACAGCAGGTCCCG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGTCGGCGGACATACCCATTCCCTGGGCAGTCTTGAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCTCACTGGTCCCCCTTGGGGGCGTCGAGGTAGTCGGG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGGAGTAGTAGGCGAGCAGGGCGTCGGTGACCTCCG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGGTCGGGACGTCGCGGAGTTGCTTGATCCTGAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGACGACGGCACCAAAGCGCATCTGATCCTCGACATG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCGGGCCATCACCGCACTCCAAGAAAGGAACACCGCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CCGACGGGTCGCTGGAAGGTAGGGCGGGTCGAGGTA
GTCGCAATGGAGCCTGGCCTTTGAGGTCAGGAAAAG	GGAAGGAAATGGGCACCACCCTGCCCGGGCAGCTCGA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGTGTTGTCGGTCGGCAACTGGTACTTGCCGACGAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GCAGCACCATGGTTCACCGCCGGGCGGAGGGGCCCACTG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTTCCTCGGTGCTGCCATGACTCTCATCATCCTTCCCA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GTGGAGGCTGAAACGATGAAGGAGGTGGGTCTGAA
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CCACGCCCCATTGTATCTCACCCCAAGGAGTCCCCAT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	GGCGCACGTCAGGATCTCGCCGGGAACCAGTAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG	CTCCGGCCTGTGGTCCCGCTGGGCCAGCGTGGACTT
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAC	ATCAGCAGCGATGTGACATACACGGCACCAGCAG
GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134406.1\|VEH69338.1\|663886_666754_-\|helicase-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
LR134406.1\|VEH69335.1\|660943_661234_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
LR134406.1\|VEH69336.1\|661230_662907_-\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LR134406.1\|VEH69341.1\|669497_669953_-\|homoprotocatechuate-degradation-operon-regulator,-HpaR	unknown	unknown	gnl\|CDD\|197670
LR134406.1\|VEH69326.1\|653829_654384_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69329.1\|656296_657160_-\|Arginine-transport-system-permease-protein-ArtQ	unknown	unknown	gnl\|CDD\|223836
LR134406.1\|VEH69324.1\|652201_652897_+\|Staphylococcal-respiratory-response-protein-A	unknown	unknown	gnl\|CDD\|223816
LR134406.1\|VEH69321.1\|649606_650656_-\|Lipoate-protein-ligase-LplJ	unknown	unknown	gnl\|CDD\|223173
LR134406.1\|VEH69337.1\|662903_663890_-\|Uncharacterised-protein	cas8u1	mkCas0114_cas8u1_CAS-I-U	unknown
LR134406.1\|VEH69343.1\|672149_672833_+\|Calcium-transporting-ATPase	unknown	unknown	gnl\|CDD\|376368
LR134406.1\|VEH69344.1\|672849_673779_-\|Glutamyl-endopeptidase-precursor	unknown	unknown	gnl\|CDD\|226119
LR134406.1\|VEH69327.1\|654743_655370_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69342.1\|670039_672181_+\|Calcium-transporting-ATPase	unknown	unknown	gnl\|CDD\|319781
LR134406.1\|VEH69340.1\|668179_669325_-\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
LR134406.1\|VEH69330.1\|657163_658021_-\|Sulfate-starvation-induced-protein-7	unknown	unknown	gnl\|CDD\|270248
LR134406.1\|VEH69339.1\|666750_668178_-\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
LR134406.1\|VEH69325.1\|652893_653763_+\|Sensor-histidine-kinase-YycG	unknown	unknown	gnl\|CDD\|223715
LR134406.1\|VEH69322.1\|650816_651491_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69323.1\|651632_652205_+\|Protein-of-uncharacterised-function-(DUF3060)	unknown	unknown	gnl\|CDD\|371435
LR134406.1\|VEH69328.1\|655526_656297_-\|Arginine-transport-ATP-binding-protein-ArtM	unknown	unknown	gnl\|CDD\|224051

Protein	Function_ID	Function_description	E-value
LR134406.1\|VEH69338.1\|663886_666754_-\|helicase-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	7.8096e-104
LR134406.1\|VEH69335.1\|660943_661234_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	2.22369e-17
LR134406.1\|VEH69336.1\|661230_662907_-\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	4.42051e-109
LR134406.1\|VEH69341.1\|669497_669953_-\|homoprotocatechuate-degradation-operon-regulator,-HpaR	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.63527e-16
LR134406.1\|VEH69324.1\|652201_652897_+\|Staphylococcal-respiratory-response-protein-A	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.25522e-73
LR134406.1\|VEH69329.1\|656296_657160_-\|Arginine-transport-system-permease-protein-ArtQ	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.92488e-52
LR134406.1\|VEH69321.1\|649606_650656_-\|Lipoate-protein-ligase-LplJ	gnl\|CDD\|223173	COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism].	1.45771e-59
LR134406.1\|VEH69343.1\|672149_672833_+\|Calcium-transporting-ATPase	gnl\|CDD\|376368	pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus. Members of this families are involved in Na+/K+, H+/K+, Ca++ and Mg++ transport. This family represents 5 transmembrane helices.	5.77281e-51
LR134406.1\|VEH69344.1\|672849_673779_-\|Glutamyl-endopeptidase-precursor	gnl\|CDD\|226119	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism].	1.87857e-22
LR134406.1\|VEH69340.1\|668179_669325_-\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	1.42192e-56
LR134406.1\|VEH69342.1\|670039_672181_+\|Calcium-transporting-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
LR134406.1\|VEH69330.1\|657163_658021_-\|Sulfate-starvation-induced-protein-7	gnl\|CDD\|270248	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold. This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1, but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	7.04168e-50
LR134406.1\|VEH69339.1\|666750_668178_-\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.35454e-63
LR134406.1\|VEH69325.1\|652893_653763_+\|Sensor-histidine-kinase-YycG	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.72202e-36
LR134406.1\|VEH69323.1\|651632_652205_+\|Protein-of-uncharacterised-function-(DUF3060)	gnl\|CDD\|371435	pfam11259, DUF3060, Protein of unknown function (DUF3060). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed.	4.40741e-06
LR134406.1\|VEH69328.1\|655526_656297_-\|Arginine-transport-ATP-binding-protein-ArtM	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.33293e-120

>LR134406.1|VEH69330.1|657163_658021_-|Sulfate-starvation-induced-protein-7
MALPLSRRAALFALGSTVLLGSCTIASDGKNTPNSASASEGALKTVTPGKLTIATGEPAYSPWVENNDPASGKGFEAAVAYAVAGKLGFANADVVWVRSTFDAAVAPGAKDWDFNLQQFSITEERRNAVDFSSPYYTTAQAVVTLKGSPVSGATTVAELKSALLGAQTGTTSHRMLTETVAPTTAPSVFNNSQDTVQALKGGQVDAIVVDLPTALYLVAAELDGGVVVGQFADTSGGDQFGLVLPKGSPLTAAVTGAVDALRADGTLDSLTKTWLSETVNVPVLS
>LR134406.1|VEH69329.1|656296_657160_-|Arginine-transport-system-permease-protein-ArtQ
MNETVDDFEVVSDIELGRRRYRRRQTIRSVLISAVSTVVFAVVIWLVLENSPGWQVTRETFFSAHYFAATLPEVAVGLWLNVQILFFAVIGVAVLAVILAVLRSLRGPVFFPLRFFAAAYTDLFRGMPFLIVLYLIGFGIPALNPTTRIPAALLGTVALVLTYSSYVAEVLRAGLEAVHPSQRFAARSLGLSHGQTLRYVVIPQAIRKVTPALMNDFISMQKDVGLISVLGAVDAIRAAQIQQATTYNFTSYVVAGLLFVAFSWPFIRLSDWYTARLREREQTGGTV
>LR134406.1|VEH69328.1|655526_656297_-|Arginine-transport-ATP-binding-protein-ArtM
MAGLKPTRADDHAGPVLEMQGVVKRFGRNVVLRGLDLSVGSREVVVLLGASGSGKSTLLRTANLLERVDDGRIFLAGTDITDPRIDVDSVRARIGVVFQHYNLFPHLSVLDNITLAARKVHGVERGAAEARGRELLERIGLSDKARAFPDRLSGGQQQRVAIVRAIATNPELLLLDEITSALDPVLVGEVLDLVLDLKRADSTILMATHEIGFARSAADRVVFLERGQIIEQGPPERVIDDPQESATKDFLARVLR
>LR134406.1|VEH69327.1|654743_655370_-|Uncharacterised-protein
MKHHFGGAAAVAVAVVLLFSSCGGQQPRSGSSGSESWGTAPQQPPRTTTPHSSSPVPSLSKPQPSETFTPEQLEAANVLIEFIRIRNEVFSNPDSDPQPLKDITIGQSQEIQMDTLAEYRRKGQVQTGEAVVRITGASEPVEFDGVRSVDVQMCTDAGKVDVIDSATGKSVVPIDRPRYLQWNVNVVKTEAGWKFGDATNENALRCPE
>LR134406.1|VEH69326.1|653829_654384_-|Uncharacterised-protein
MERMDLHAPNIGLWPHPLEELPNGYNYIGWNNWMWIKNPTPNTWGPITKTVTQSGHSITATAAVTHLTWEMGNGDTKTCDKGIEHPEHNTRNEKSPSCGYIYHQTGNYTITATAHWVIVWTGLGQQGTIEMDLTTQAHTKVVEVSAVNIPNNKHGTPTTPSLPVPTSTPTKEAPCPTNHNKHGC
>LR134406.1|VEH69325.1|652893_653763_+|Sensor-histidine-kinase-YycG
MRKPVWVWAVAVVGALAAAGMRIAGETQMFKVGVELWALPLLAGLLVPAVVMLAGWRRGRNARAVKEAVEGVKAEAREAHRTFVGRLDHELKNPLMALRVGLGEVRDPVLAESMRVQVDRLASLVAELRKISEIDSYPVADEPVDVSEVVSEVIETVVPGDREMVVAFPRAPRPLPPVRGDRDLVFLAIYNVVSNAVKYSSPGATLEVRGMEERGYVVVDVSDTGRGIPASEVDQVWGELARSKEVRHIPGNGLGLPMVAAVLRRLGGSCELSSIQGRGTTVRMRLPLL
>LR134406.1|VEH69324.1|652201_652897_+|Staphylococcal-respiratory-response-protein-A
MSSVLVVDDDPMIRDHLARTLERAGFVAFTAADGVAALDVVGKQHPDLIVLDVLMPRADGREVLARLRRGGDWTPVILLTGVGQSGTRADALEKGADDYLNKPFDPAELVARIRAVLRRGQLGRTLTHASRIRGGGLELDRLAKTVTARGQAVQLTPKALALLEYLMVHHGETFSRDHLLEQVWGVEFAITTRAVDHRVAELRKVLGARGLEVIDTVQGVGYRFHPEVRAA
>LR134406.1|VEH69323.1|651632_652205_+|Protein-of-uncharacterised-function-(DUF3060)
MKTNLIRIALAAAAVTALGLSACSAGAENKPAGNTQAVSTTQDANKNTPSPGNVATASNGGDANTTASSDGSGNKSGSKDKGDSDDKPCVGNPNVSSSNGVVTLSGHCDTINITGSGNQVTFESADKVILSGGSNVVVGQELDDVEITSSGNSVTVADDLDEVTVSGSGNTVSSQGVEKKKDTGSGNTIS
>LR134406.1|VEH69322.1|650816_651491_+|Uncharacterised-protein
MKTILTRTAIAALAIASFGFAACAAGVEAKPQDAPGNAGSSQQAPAQTDSPTPQQTKSEDSSSSETKNGSGGVTAPGVTVGPGGVKAPGVTVGPGGVKAPGVTAGSSGVTASAGSVRSADCEKDSVVEETGAVVRFSGHCESIVIKSTGAVVEYDQVDKMVIEGTGIAVKGGDIKSLKITGDGAGVVSSGDVGEVTISGTGNAVTVSGTVGKVKDTGIGNAVNS
>LR134406.1|VEH69321.1|649606_650656_-|Lipoate-protein-ligase-LplJ
MHGEYKVPDGKLVAVDLDVVDGKLSQVVVSGDFFLEPDESLDDIVRALTGLPHTSSVADLAAAINSCLPKDARLLGFSPEAVGIAVRRALGHATNWDDHTFDVIGPVTLDPRLHVALDEVLAARMARGEIGPSLRIWDWDQPLVVIGSFQSYRNEIDEEGRERHGINVVRRITGGGAMFMEPGNCVTYSLLVPGSLVEGLSFERSYEFLDQWVMGALAELGVMARYVPLNDIASDKGKIAGAAQRRLTSGVVLHHVTMAYDIDADKMLQVLRIGREKLSDKGTKSANKRVDPLRSQTQLPRDQIIDSFLKHFESRYSTRRRNYTDDELAAAAELVEKKFATPEWTRRIP
>LR134406.1|VEH69335.1|660943_661234_-|CRISPR-associated-endoribonuclease-Cas2
MKTRRRRYLVAYDIREPGRLRRICKLMEAHGERLQYSVFICDLNRSELIHLRAAGEKIMNLAVDSVVIVDLGEIGEDRFIFVGHHEDLPTRGPQIV
>LR134406.1|VEH69336.1|661230_662907_-|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO
MTVRPDIPGLPETVPARMLNEFVYCPRLFHLEWVQSRFTTSDDVEEGRYLHRVVDEESGDLPDKSEAWGGRTARSVSLSSPGLGLVAKLDLVEDGGNGSVVPVDYKKGHPDKTGAPWPNDRTQLLIQALLLKEAGYVVERAEIWYAETRRRVVIRIDETALSEITETLKDAWRVAADPKPPPPLRNSPKCPRCSLVGICLPDELTSLKIPPRERRPLKRLMAPILEGRPVYVTMQGSTVGIRNDRLEVRLDGELQASYRLIDVSQLCVFGNVTVSSQAVRELMSNDLPILWFTYGGWFAGMAEGLPGKNVDLRIAQFGASEQKRLEAARNMISGKIRNSRTLMRRNSRTEAERIGNQLKELAIQATKAASPGQLLGIEGTAARLYFASFPAMIGDNTRIDVSDFHENGRSRRPPPDPLNALLSFCYALLVKDLTVALASVGFDPYLGMFHKPRFGRPALALDLAEEFRPLVAESVVVQVLNNREVGPHDFRTRAGGCMLKPSGRKAVLRAYERRLDQEITHPQFGYKATYRRIMDIQARVLGAFLTGELDQYTAMVTR
>LR134406.1|VEH69337.1|662903_663890_-|Uncharacterised-protein
MMNHVTLPALLGDSPLAILAAIGTLRLIHDFTDNNARLHWNTTDHRPVLTSSLATVDEVAEALVDIVRTMPEGVSVPGGPMGFPPPGEAPDKLRVPQGKLHSFAENLFPEISETESATMFSWLTSLITDLAATSEKSDSGSKNQKSNSQKRCSVSQFIASSGKQSIATMLKKPLEHVQKHPEYLHEALTGWVRVPGVTGEYLDHRAAWKAIDDGRGRTGRMRGVPGATWLALMSYPIWTTTAAGKKPRTSGWHLVGKGRRSIQELRLPLWVEPLGPLAIKALVEHPELDGDLDVPLNQKIRLLGIFHVCRARRAPSEHSAGLLIPAQR
>LR134406.1|VEH69338.1|663886_666754_-|helicase-Cas3
MIAGDFDLFMEELHGHRPFPWQSDVVADMLRAGTWPSLVDVPTGLGKTSMLDAAVFVLAMCAGGEAASGLGRRRIFLVVDRRIVVDQAELHGKRIAEALETASPGSVSEEVARRLRGLSGSSDGPVLPVVKMRGGATWDAAWLPLPDLPAIVTGTVDQVGSRLFFRGYGVSARRRPIDAALVGTDSVIMIDEAHLAQALTASLEATSSLDSSQVLGLPRTSVVQLSATSTGRPEGWTTSFDEDAHLDDPTARARLAAAKTLTFVDTTKQQVVRDIAAHAAEAVTGTDSRVLVVCNTVDRAREVHNRLLRSKGLPSGTEVLLLMGRSRPVDREAITAKVTELFGADREEKPGSAVLVATQTVEVGIDLDATALITETAPWDALVQRIGRVNRRGVLPAADVVVVEDNDPKPPVYGNVKVRTTEFLRSRIKETGAVDVSPLALRHMDVPAELTAAAPLLPLLLPAQLDAWARTSPAPSVDPPLDPYLHGIDTSVAPVTVAWRDGLRNAWNETLPADEVGGAIDSLPVRAEECVAIPLGALRRWLCDAKPLPVGDTEDYDDFDDIPFGDDSESTVLRRVDGGSGPSTWAWVSGESLRPGDVVVVPTDSGGLDQFGWAPTSTDKVSDVSELATCRRGRAALRLDPGLPDRLGIPASTDFQDLVRDWRNCDDPDDREEFSSGIVSAVLAWLARHPDPESSSAWTSDDLATLRAQLAGNIVLTQTTEASSPILRVVSPETSWLNADDGNSDETSHLNRRVALATHMEAVGARADGVARRLGLPEPVRQTVTDAARWHDLGKVDQRFQAMLFGGDPIRAELADEPLAKSGMPPGDRQQYRRARQLSGLPQGARHEAWSEVLVAEYLAGLTEPYPGDPELLHHLVASHHGHARPFLPPVLDTGEHTLEAVVDGIQVVSALPTSVRLSDAERFSRLNARYGRWGLALLEAIVRCADMTVSSEGS
>LR134406.1|VEH69339.1|666750_668178_-|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MPVCLDICLMSERYEAGDGEDPRAPEWPPHPARVFSALRSVAESDEIAPLYEFEQLPPPLIHASAFAPCSISRSFVVTNARFNGEKTKSGKIKTGNQNHPARTSDLMKRIRSFPPDPRIQFVWPDDRDLSDEALAGLDALARRVPYLGRSTSPVMLAFRRVADFRPLPGLSTFEPTDHDRAECNIRVPFPGYLDELNALHELDQSSWQASRSHARQPYRLVRDESDAVAPTVVESPYPDLVILRFVDHRPPGNLVGLFTAALRAKVMSQTKNPLPPALHGHGFDGHPHVAYLGLPFAGFPHADGHLRALAVAIPGLDRAERRRILRGILGTDPDRIVDLQVPGFRRVFGLRYSPDEPLPASATAARWTRPARSWVSVTPLVLDRYPKKGDLAPAVVRSIQQAGLPAPVTVELSTQPLTPGAAHLTPKELPLRTRGRLYRHVRMTFEHPVTGPVLAGAGRYFGVGLFAPEREGADG
>LR134406.1|VEH69340.1|668179_669325_-|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system
MTTLSLGSLQDKIRDPEFALARINATYQPGGGPGSRLFPPTFPTSRSDDSPYLMEERTCDGSSRRAVVLDQVPSQANRCEEALKTARQAGKIRLPLLRLTHDGAAKAVITGLDAPHRAFDAYWRDSLLDGEKFDRTPVGKALQATSLEDATALLQYDPATLVYGGWNSHRKGRQAKFPRFYSSEVVGWDPVVGTRKASRMDPLNLTGARNGDGDEWTYSPAAAKNAKARLSEIGHGNIAPNPAHGGVTVTEVTRFSTLSLTAVRRIRFGSLGVNTQFAASTLLVALALLGDRLAFGGAGIWLRSGCDLVVEAETLEWIGRGGVVEPFSLSIGEAVSLYDEALEAAIESGVPMHLETIELTPSKALAAAIDFTVTKAESSGE
>LR134406.1|VEH69341.1|669497_669953_-|homoprotocatechuate-degradation-operon-regulator,-HpaR
MSTDADETVADLHRLFSGLSRLASRMRLRNAMHPGIRNLAQTDAWLLSHLAATGPARMSALAEWQAVDRSTMTAQVKRLERAGLARRHTDPTDRRASIVTLTEDGEAACSEIRREASAFFADILSDWTPEQRRELIESMTRLSTALEEHLN
>LR134406.1|VEH69342.1|670039_672181_+|Calcium-transporting-ATPase
MTTSPALQTADEALSAAGVDPGTGLSSVEAASRLVSHGPNELRSQPREAAWRRFLKQFADPLVYLLFGAMAISLAAWLLEGAGGLPIDVVVILLIVLANAVIGFVQENRAADAVAALADMTAARATVLRDGKLATIPAADLVPGDVLVLGEGDAVAADARLISASSLQVQEASLTGESEAVTKTVTPLAELGSLGDRHNMVFKGTAVARGVGRAVVTGTGMDTEMGRIATLLDETADEPSPLQREIAQISRTLGVLVIGIAVVVMIVVAAVNGVSSFHEAVDILLLGVSLAVAAVPEGLPAILSLVLAIGVQAMARRNAVMKDLHSVETLGSVSVIASDKTGTLTKNEMTIREIVTPSGRVELTGTGYEPVGAAVITGDEARTRAEAERTLAAGALANNAQLAKVNGTWEVQGDPTEAAFLVAQHKLEGVSERIGAWERIGEVPFTSERKMMSVLGRRTTDEHVRLFAKGAPDVLLERCTAELVGDDVVPLSDERRGRIEADIERLSAEGYRTLGVARRRALEQDPATFTEDAEHDLVHLGVVAIIDPPRPEAVEAIAEAHRAGIRTVMITGDPPRHGRAHRRRPRHHGRGLPGADRPRDRIHGRGGTGPGGPGRRRLRPCLPGTQATDRRRAAGRRAGCLHDRRRRQRRPRPEIRRHRDRDGHHRHRGDQGGRGDDSRRRQLLHHRRRRPAGPRNLRQHQEVHALPAQLQHG
>LR134406.1|VEH69343.1|672149_672833_+|Calcium-transporting-ATPase
MRYLLSSNMGEVATVFLAVLLGGLIGLADPANSAAAVVPLLATQILWINLVTDSGPALAMGVDPETDDVMGRGPRKLTDRIIDTHMWQRIIGVGLVMGLLTLLIYDLTLPGGLVGGLEDLATPDSQFVVARTTVFTALVFMQLFNALNSRSDTGSAFTHMLSNAWLWGSVALVTVLQVLVVEVPFLQSAFGTAPLDWIHWAVAVGAGAAVLLYEEVVKLLRRTFGAP
>LR134406.1|VEH69344.1|672849_673779_-|Glutamyl-endopeptidase-precursor
MKKIRNSITSAAGAALLAAALLATSSPALQAAADDDPAPNPAEVSPVGIDSSGQSLTWQPDDAPASSGDSVPGYKPDSIESAPSSIIGEDERVRLTDTTAYPNSAIVYISKGGKPYCTGWMISADTLVTAGHCVYSYERQEWTSGLEFSPGANGPERPFETATATQKWTDVAWVKNNDPRLDWGLVKLDKPLGDRTGWFGLTWRSEDYKDIGVELRGYPYDKAPGELWGMGGTVTESRGNQLCYLMDTFPAQSGSPLYMSDGAFAIGIHAYGTVRGQQQPGRECPQEYNAGTRITKGLYELFVDLKSRR

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Crispr_ID: LR134406_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134406_7

699349-699459

Orphan

Consensus_repeat	Method
CTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134406_7

>merge|LR134406|7|699349-699459|CRISPRCasFinder
CTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCAGGTCGAGACCGCCATCAAGGTGGCCCGCAAGTGGGGGCTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCAGG

>LR134406|7|6|699349-699459|CRISPRCasFinder
CTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCAGG	TCGAGACCGCCATCAAGGTGGCCCGCAAGTGGGGG
CTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCAGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134406.1\|VEH69360.1\|694477_694711_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69353.1\|683951_684704_+\|HTH-type-transcriptional-repressor-glcR	unknown	unknown	gnl\|CDD\|224268
LR134406.1\|VEH69366.1\|704153_705290_-\|VanZ-like-family	unknown	unknown	gnl\|CDD\|377417
LR134406.1\|VEH69363.1\|699495_701196_-\|PTS-dependent-dihydroxyacetone-kinase,-dihydroxyacetone-binding-subunit-dhaK	unknown	unknown	gnl\|CDD\|237723
LR134406.1\|VEH69371.1\|710075_710543_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|370773
LR134406.1\|VEH69361.1\|695039_698849_-\|NACHT-domain	unknown	unknown	gnl\|CDD\|227922
LR134406.1\|VEH69357.1\|690311_691616_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|213993
LR134406.1\|VEH69359.1\|692668_694270_+\|D-xylulose-reductase	unknown	unknown	gnl\|CDD\|176200
LR134406.1\|VEH69367.1\|705477_706860_+\|Gamma-aminobutyrate-permease	unknown	unknown	gnl\|CDD\|224038
LR134406.1\|VEH69364.1\|701351_702398_+\|Sorbitol-dehydrogenase	unknown	unknown	gnl\|CDD\|176197
LR134406.1\|VEH69368.1\|707070_708294_+\|Ornithine-aminotransferase	unknown	unknown	gnl\|CDD\|179736
LR134406.1\|VEH69362.1\|699081_699183_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH69354.1\|684714_686070_+\|Dihydrolipoyllysine-residue-acetyltransferase-component-of-pyruvate-dehydrogenase-complex	unknown	unknown	gnl\|CDD\|237001
LR134406.1\|VEH69369.1\|708314_708692_+\|Predicted-methylated-DNA-protein-cysteine-methyltransferase	unknown	unknown	gnl\|CDD\|119438
LR134406.1\|VEH69370.1\|708674_709991_-\|beta-hexosaminidase	unknown	unknown	gnl\|CDD\|224389
LR134406.1\|VEH69365.1\|702506_703862_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|199838
LR134406.1\|VEH69358.1\|691638_692643_+\|Sorbitol-6-phosphate-2-dehydrogenase	unknown	unknown	gnl\|CDD\|183489
LR134406.1\|VEH69372.1\|710687_711530_+\|alpha/beta-hydrolase-fold	unknown	unknown	gnl\|CDD\|223730
LR134406.1\|VEH69356.1\|687476_689936_+\|Acetoin:2,6-dichlorophenolindophenol-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
LR134406.1\|VEH69355.1\|686081_687449_+\|Dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568

Protein	Function_ID	Function_description	E-value
LR134406.1\|VEH69353.1\|683951_684704_+\|HTH-type-transcriptional-repressor-glcR	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.9239e-81
LR134406.1\|VEH69366.1\|704153_705290_-\|VanZ-like-family	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	5.06357e-19
LR134406.1\|VEH69363.1\|699495_701196_-\|PTS-dependent-dihydroxyacetone-kinase,-dihydroxyacetone-binding-subunit-dhaK	gnl\|CDD\|237723	PRK14479, PRK14479, dihydroxyacetone kinase; Provisional.	0
LR134406.1\|VEH69371.1\|710075_710543_-\|Uncharacterised-protein	gnl\|CDD\|370773	pfam09991, DUF2232, Predicted membrane protein (DUF2232). This family of bacterial proteins are multi-pass membrane proteins with up to 10 (2 x 4/5) transmembrane regions. The exact function of this potential pore molecule is not known, but in many instances it is associated with ABC-transporter-like domains, implying that it is part of a secretion system that uses energy.	0.00176058
LR134406.1\|VEH69357.1\|690311_691616_+\|Uncharacterised-protein	gnl\|CDD\|213993	cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound. The PHP domain of this HisPPase family has an unknown function. It has a second domain inserted in the middle that binds adenosine 5-monophosphate (AMP). The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to give histidinol. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to the other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.	2.20704e-05
LR134406.1\|VEH69356.1\|687476_689936_+\|Acetoin:2,6-dichlorophenolindophenol-oxidoreductase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	4.12997e-103
LR134406.1\|VEH69367.1\|705477_706860_+\|Gamma-aminobutyrate-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	1.81092e-125
LR134406.1\|VEH69364.1\|701351_702398_+\|Sorbitol-dehydrogenase	gnl\|CDD\|176197	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	2.13749e-131
LR134406.1\|VEH69368.1\|707070_708294_+\|Ornithine-aminotransferase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	4.27993e-174
LR134406.1\|VEH69361.1\|695039_698849_-\|NACHT-domain	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	7.32162e-10
LR134406.1\|VEH69354.1\|684714_686070_+\|Dihydrolipoyllysine-residue-acetyltransferase-component-of-pyruvate-dehydrogenase-complex	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	1.86258e-126
LR134406.1\|VEH69369.1\|708314_708692_+\|Predicted-methylated-DNA-protein-cysteine-methyltransferase	gnl\|CDD\|119438	cd06445, ATase, The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of the C-terminal domain, suggesting an important structural role for the N-terminal domain in orienting the C-terminal domain for proper catalysis. Some ATase C-terminal domain homologs are either single-domain proteins that lack an N-terminal domain, or have a tryptophan substituted in place of the acceptor cysteine (i.e. the motif PCHR is replaced by PWHR). ATase null mutant mice are viable, fertile, and have a normal lifespan.	9.29721e-16
LR134406.1\|VEH69370.1\|708674_709991_-\|beta-hexosaminidase	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	5.381e-60
LR134406.1\|VEH69365.1\|702506_703862_-\|Uncharacterised-protein	gnl\|CDD\|199838	cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent glucose dehydrogenase. This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.	5.73484e-05
LR134406.1\|VEH69358.1\|691638_692643_+\|Sorbitol-6-phosphate-2-dehydrogenase	gnl\|CDD\|183489	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional.	1.30724e-73
LR134406.1\|VEH69372.1\|710687_711530_+\|alpha/beta-hydrolase-fold	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	9.84142e-26
LR134406.1\|VEH69359.1\|692668_694270_+\|D-xylulose-reductase	gnl\|CDD\|176200	cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	8.7197e-31
LR134406.1\|VEH69355.1\|686081_687449_+\|Dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	1.60353e-174

>LR134406.1|VEH69362.1|699081_699183_+|Uncharacterised-protein
MIDTGPVSRSRNGIEHVNIVDFLLEDPLAEFNG
>LR134406.1|VEH69361.1|695039_698849_-|NACHT-domain
MAMARRSELVDALAAVAVSALSGPLGAIGVSAASELVKLLQKARGRTSEEKELQKQVREAITAWADGERLDQDVVERGLAWAIEYVQAAGCQHELIADADFDPTQAAEAVLTQAKEKDDFWGTDPEYGVAERAVHVTYNALCPKLKAEGGVVLAAIQASRHEIRGSIDQLREDLLGIADRHELIDYLEKQIRDWDYSPWTQGRKWSQNRKPSLLERTLEIEDEHKTMSPAKALEGVWLLTVLGGPGSGKTWLARRIAREAAETALEKLRDPRVDPASVEFPLVTTVAEWVKRHETGFEGLVEAALPHESQEKILRLVLHPGARVLAVADSLDEGVSVNSARTLLNSLTSSPTRRLVVTSRPEAWHSATAGLRTKQDTRVGTLTELRYPADVHGYVEAWFTENPPTAQHLIRQLERRRELRATATSPLLLTFYCMLTEQEPDQELPRRRRELYRTIIDLLLAGGWETTEEHVDTDACRAILQQWAWDAVKDAITPAGLGVWPETITTNRTPPHVSAAMERALDNVAPKQERPRSSLYDHTRVKRRFLHRTLWEYLVSEHIATTFSAAKAAKALLPHIWFDPDWHITLPMAIAAHKKRSKLVDQLWSYHTDPPTPAQEVVNIYLEALMLEVAAQTDPEDWNKANQARIRSLRENLAPHHPELIVGSAHWGGLNHIEIILTALTHATPWAVPGLIGTLLRLKPSDKERAEAHRTILTQLTSRISKNSPNIVSALLELKINKEKQKETRQAILTALPKAQPLEVPDLARALLKLKPNNKERTKARHAILTALPATYSWGVSKLVRALLELEPNHKERTEAHRKILIEFATVLTQLTYDNSQQIPDIVDALLDLKPNNEERTEIRQVILAQLIYTNPKNVPKSVHALLKLDPNDEELAEARQTILIALIYTDWWKVPDLIHVLLDLKPNYEERVEICRIILAILTNADPLSANPGTDPWKIPDLVGALPDLELNDEERAEIRRTIFTQLNPNDPWKAPNSVRALLGLEPNDEERAEIRQTILAALSCTYSWGVPDLVHALLTLKADDKEKTEARQAILAQLAHANPWKIPDLVHALSELKPNNKEQAEARQTILTQLPNTDPREVPNLIDTLLELSPNNKEQAEARQTILTQLPNTDPREVPNLIDTLLELSPNNKELKEARQTILTQLPNTDPREVPNLIDTLLELSPNNKELKEARQTILTQLPNTDPKKISRLVRMLSKLGLLPEERTEICQAILASLPEVNSETLYGLVDLLRQLTSVDDWFAALGIEST
>LR134406.1|VEH69360.1|694477_694711_-|Uncharacterised-protein
MARNTEGSHGTHAALAHVTHSEILTYLKDKGHVRIDQIPEDLGIADSTLSDHLTITKPCDCSSRANLATIKDLIVPL
>LR134406.1|VEH69359.1|692668_694270_+|D-xylulose-reductase
MSDIPATQHAIQIVGVDEFVLNPAKPVDEVGPHQMLLKVEACGICFSDTKLLHAFDSHPRKAEVISGIAPEALAEIPGYRPGGRATVPGHEPVGCIIAAGEQVTHFEVGDRVLVQADWKHLRTPKSNGAFGYNFEGALQEYVVIDERCVVSPSGEEFLIHVTDGPSAAAVGLIEPWATVEGSYAWAERNHVADGGRLLVVGDGDLGSLTSQHQPAETVLAAPQEVAGLGGETFDDIVCFCSDAEVIEACAKLLGTRGVLCVVLGGGRIDRKVSLDIGRVHYDFIRFCGTTGDDPADGYAWIPATGELRTGDKVAIIGAAGPMGQMHTMRAVTSGVPGVTVTGTDVSDDRLEHLRGVVGPVAEAREVPLKIVNTSAAPLKPGYTHLSCMVPVPALVSQAVDLAGEGAIVNAFAGIPAGTFGDFDLQGIIERRVFMLGTSGSDVSDMRTVLRKIEDGVIDTTISLDAITGMAGFADAIGSVINRTSGGKIMVFPSLHDLGLIRLAELETKLPHVAEKLKNGRWTKEAEEALLAGE
>LR134406.1|VEH69358.1|691638_692643_+|Sorbitol-6-phosphate-2-dehydrogenase
MSNAPKVRGAFLTALNRPVLVRPSDAEATIVLDAATIPADVSLPVVVRLGEETYEVTATPRGEREISGRVALVTGGAQGFGAEIAKGLVDQGCFVFIADLNGDGAAAKCAELGAELTHPIIVNVADEESVAAMAAEVERVAGGLDLVISNAGIVRAGSVLEQDTSAFRLSTDINYVAFFLVTKHLGGLLARQHEAAPGWLTDIIQINSKSGLVGSNKNAAYAGSKFGGIGLVQSFALELVEHGIKVNAVCPGNFYDGPLWSDPDRGLFVQYLNSGKVPGATTIEDVRAFYEAKVPMRRGTTGIDVLRAIYYIVEQAYETGQAVPVTGGQVMLSA
>LR134406.1|VEH69357.1|690311_691616_+|Uncharacterised-protein
MNQINDPGVPPEERLAALRVVAGQESFPDWVVESNNHIHTCYSFSPYTPSGAALGARRAGLRVVGSVDHDSIAAAAEMTEATRILGMGSVTGFECRAFFDPGGPFATRKLNNPDSAGIAYMTVQAIPAPARAEVDAWLAPRRAARLERTLAMAEAANSILTRLGLASFDPQTDMVACSQYATGGGITERHLLAAMADALIDGFGRGEALVAGLQGMGIDVPAKLAGVLGDADNPHLTYDLLGVLKSEYLASIYIQPTADECPTAEEVVTLADSVGAIATYAYLGDVSASPTGDKKAEKFEDDYLDELFDAMAERGLRAVTYMPPRNTPQQLRRIHDLATRHGMYEISGVDINQPRQSFTCPELRDPGFAALNEATWALVAHEALTAVDPSLHILGEGRPRPEWLAARIAAFAPLGRALADGADAAELAATAPRL
>LR134406.1|VEH69356.1|687476_689936_+|Acetoin:2,6-dichlorophenolindophenol-oxidoreductase-subunit-beta
MTRSLIVDPTNVRAKGVITAPEIPVNAYEPNFKAELKRHGKQGLIDILHDMIAVRSFETMLNSIKTTGAWNGVEYNHRGPAHLSIGQESAVVGQASQLGADDFVFGSHRSHGEILAKCFSASRKLDAADLEHIMKEFLDGETLSFAEQVSDDGLADVAENFILYGAVAETFARKAGFNRGLGGSMHAFFTPFGSMPNNAIVGGSADIATGAALFKRINRRAGIVIANIGDASMGCGPVWESMMLAAMDQYRTLWKDGVEGNPPIWFNFFNNFYGMGGQTSGETMGYDILARVGMGVNPEAMHAERVDGLNPLAVADAVARKRELLDAGRGPVLTDTITYRFSGHSPSDASSYRTREEVELWEKHDGLKNYAAYLIKNKVLTQADVNAIQQRFDERLTKVIALATRDEDLSPRVHMDFIDTVMYSNGNKEKLSEEEPQLLTPLAENPRVKALRNKIRTARDENGKPVSKNKAFAYRDAIFEAVAHRFATDPTLAAWGEENRDWGGAFAVYRGLTELLPYHRLFNSPISEAAIVGAGVGYALSGGRALVELMYCDFLGRAGDEIFNQAAKWQAMSAGLLEMPLVIRVSVGNKYGAQHSQDWSALCAHMPGLKVYYPATPYDAKGMMNLALRGTDPVVFFESQLLYDKAEEFQPGGVPEGYYEVPEGEPVVRREGSDLTIATLGATLYRALEASDILQSKYGLSAEVIDLRFVAPLNLDPVVESVKKTGRLLLSSDAVERGSFLQDVASKVQSIAFDHLDAPVTVVGSRNAITPAAELEKEFFPQPEWLVDAVHERILPLPGHVTISNQTTAELARRTREGL
>LR134406.1|VEH69355.1|686081_687449_+|Dihydrolipoyl-dehydrogenase
MTDHDVIVLGGGPGGYIAAERLGHAGKNVLLVEAASLGGTCLNVGCIPTKTLLGAAKTYDHARHGAQFGVKVDGAHIDWPALQKWKDKVVSTLVGGVAATEKKAGVTVVHGHGTFDGPGKVTVDGTTHTATHVILATGSVPVMPPIPGAKDNPLVIDSTGALSLPEIPERLAVIGGGVIGVEFASLYSMLGTQVTVIEMLPEIVPFADDDVAAQLRKALKDVTFKLGCRVTSIDGGKVNWTTADGAEESVEADYVLMAVGRRPAVDGWGAENTGLEYSGRGVVVDDRMRTNLPNVWAIGDVTGRSLLAHAAYRMGEVAAANILDPEAHRRGEVMRWHTVPWAVYTAPECAGIGLTEAAARKAGRDIITASVPGYMSGRFVAENGLQAPGLAKLILDAETRQVLGIHVLGSYAAEMIWGASAVLETELDLTDLRQLVFPHPTVSELIREAAWAAKA
>LR134406.1|VEH69354.1|684714_686070_+|Dihydrolipoyllysine-residue-acetyltransferase-component-of-pyruvate-dehydrogenase-complex
MATVIVMPALGNSVESCLIVSWLVKEGDTIAENGILCEVETDKASMEVPSTASGTVLKLLWAEGDDVPVKQPLLVVGEPGEDPAPVLAEVGFGAAQEETPEQATVATAEPPEQAPTGASVAGDERGSSPRARNLAAAEGIDIAAVPAGTGPGGRVIARDVAAVAETTTRAAARAGAVAGEGTGLGGRVSQADLTAPAAPAEETPTPAPAAVGGADPDFPGPSTSTPLKGIRKVISERMMHSLASSAQLTYTTTARAQGLLDMRKKLKNSDPALGLNKVTIGDLVGFAAVRTAAKHPTHNAHLEDGVLTTFERVHLGFACDTPRGLLVPTVRNASQLSLGQFSAICKDLAAQAIEGTISPDLLGGATFTVSNLGGFGIEHFTPLLNVPQTAILGVDAIFPRAYADEKGKVRVEQRIGLSLTADHRVIDGADAARFLQDLVAFLENIELAALS
>LR134406.1|VEH69353.1|683951_684704_+|HTH-type-transcriptional-repressor-glcR
MVVERTERESAILAKLADDGRLSVSGLASDFGVSEVTIRGHLRTLEQQGMLVRTRGGARPITLQGILQRQQVNVEAKEKIAQAAAELIGDDDTVMIEAGTTAALIARHLTGRRGVQIVTNSTLVFNNARTNPALNIILAGGVFRPESESLVGPLAERAIADFNTRIAFLGTDGFSPERGLTTRFVEGAQVATTMRERAEQTWLVADSSKFGQAGFVSFLPLDAITGIITDSGLPDDAVEALKEHTHVRIV
>LR134406.1|VEH69363.1|699495_701196_-|PTS-dependent-dihydroxyacetone-kinase,-dihydroxyacetone-binding-subunit-dhaK
MTRLTNDPADFPAEALKGFIAANKRYVKPVYGGVARSTFTPAGKVAVVYGGGSGHYPAFAGWVGHGFADGAVCGNIFSSPSAAQAYSVLKAVHRGAGVLMGFGNYAGDVLHFGQAIERLRAEGIEADTLVVTDDIASGDAAEPEKRRGIAGDFPVFKITSAAAEAGLGFDEVRRVFAKANAATRSFGVAFAGCTLPGAKGPLFTVPTGRMGIGLGIHGEPGVAEADLGSADDVARTLVEGLLADRPAGAGNRVVAIVNGLGASKYEELFVVTSCVVARLEAAGLECADVEAGEFVTSLDMAGVSLTLVWVDDELLGYWDAPCDAPAYRKGSVGSVERDDAKLSQAAAPVDVTTPGSTASREAAEVAAGLLDDVAGMLARAQEELGALDSVAGDGDHGIGMANGSRAAAGAAHAAVSAGGGLRTTLTAAGDAWSNRAGGTSGALWGALLTALGSALGDEKTPDGDDIAAALQAALSAVQRLGGAEVGDKTLVDALSPFVAAFVATDGDLAAKSAAAVVAAEAGTESTRALVARLGRARPLGEKSVGTPDPGAVSLTKVVTLLNSRLS
>LR134406.1|VEH69364.1|701351_702398_+|Sorbitol-dehydrogenase
MMRAAVLEEIGSLRLKQVPVPEPGPGEVLVRIEANTICGTDLRIISGAKTAGVRPGVILGHEFAGRVAAVGRGVDGVPVGAQVTCSIVVSCQRCRACLSGREQLCENLVLFGYELDGGLAEYLLVPRIAMDHGNLVVLEKEIPATTLALAEPVSCCLNGAGQVAVAPGESVVVLGTGPIGLLHIALAKLAGATTILAAGREGRLTAATDFGATCAVALTGEALTDEVRERTNGRGADVVIVAVGDLALANQALELAAIGGRVNYFAGFPKGKTASIDPNLIHYREIAVTGGSNARRADVRRAVELLSSGALDVGRLVTHRFPLAEVDAAVTAVARRDGLKVAVMPEAE
>LR134406.1|VEH69365.1|702506_703862_-|Uncharacterised-protein
MKAVTHSPNAAARPASRWRLRGAAALMGAVLLTTSCWGTGSETPSSAPTIPSSPESSPPPTPPARLTTAWEVTVTGSGPLLEAHEGLVVAPDLTAGGSKLRMLNWTDGSEVWSVDVSSDLAGFDILRKVPDTPPGQVAMWAETSQQQRTLFVYSTADGSLIGRLDEKPERYLAMAASGAIYEMDTSKEGSVRISRAPSIKEANTKQWSIDLPEEAREWFWVREHDGVTDFCVDGQAGPVHEYACYLSVHTDDGSPVVKDGVWHRSAWVGNVLVGQKNDGPLKGFDQHGKELWTAEVRGGYPLGWGDDLVYVTEGMHRSFVGLDPATGKELWRRDWDGGPWLAPVFDRTPSPQDGPLSVFVPSPSIRTGVLDPKTGQLDLVDHQITKAHNVIPTLGGALLIPTGDYYAPTWIALDPGKPGTLWSDVLKNYDTYSMLDGRLVAYKGDRIALLA
>LR134406.1|VEH69366.1|704153_705290_-|VanZ-like-family
MQDWVNNGLLAAIIGAVAFAALFLPGLVWQYRRFGRLSFARLLGLAAVCLYAAALLTYTLLPLPERSVEWCQLHARGMNLRPFAFIDDIREAAPGRSLRGLLTSFAVLQVAFNVVLFVPFGVILRRYFNRSVLVTTLLGAATSLLIELTQLTGLWFIYPCAFRAADVDDLMTNTLGTILGAVLAPVLLWWMPRAHQLVQDRLTPRPVTMWRRWIGMLIDAILVALVAGTTAVVLRVATLLFLGDVSEEWTLLIAPAAIALATITVFVWPAWNHLAASVGQTVVWLTPKWRNADGTLHDGSRLRRVVRSLVVPASWLIPMFLAPFGTSSPFIWLLPLVVPLSLVMVPFTRTHRSLSGWLTGAQMVDIRAEETDKALPVH
>LR134406.1|VEH69367.1|705477_706860_+|Gamma-aminobutyrate-permease
MSSPAGDLKVAMKPRHLVMMSLGSAIGAGLFVGSGAGIATAGPAVLLSYVISGAIVLAVMRMLGEMVADDPNPGAFSYYADKALGPAAGFAIGWLWWIEMGLVVATEATAAARYLSTLIPGFPQWGFALIIMVVFTGINLVKVGSFGEFEFWFSLIKITFVVVFLVLGAAFLLGFTPAASPGWGNLLGNDFMPHGIKGVASALLVVIFAFGGVEIVAVAAAETADPERSIRKAVNTILWRILIFYMGAVTIMLLALPWNDPSLKDAPFVAVLNAAGLPAVAAMIGTVVVVALLSSLNANLYGGSRMIFSLAERRMGPAVMRGTNARGVPVAAVLATSFLGFVAAALNYFWAEEVLKFLLNMVGSTMIVIWLGIIASHLALHRRAAREGNHSLKGFPVALSWATLVAVAAVVALGFTVPEIAVQLSSTFALTALLAAVGGWLAKRAAVPGPESEPAAENGM
>LR134406.1|VEH69368.1|707070_708294_+|Ornithine-aminotransferase
MSENTRTAIELVDTYAAHNYSPLPVVVTEASGAWLTDVDGRRYLDCLAAYSALNFGHGNPTFIDVAKRQLDRLTLTSRAAHSDWLGPFAQKLARLAGKDMVLPMNTGAEAVETAIKVARKWGHQVKGLPQDRGEIIAMHGNFHGRTTTIISFSDDETARADFGPYSPGFRLADFGDVESLRQAITPETVAVLLEPIQGEAGIIVPPAGYLREVRELTRRNNVLLICDEVQTGMGRTGTTFRFQAEDIDPDIITVGKALGAGIVPLSAVIADREILGLLRPGEHGSTFGGNPLACAIGSAVCDVLATGEYQRRSTGLGERLHAGLEALVGHGVTAARGAGLWAGVDIDPAIGTAKDVSLDLLDHGILVKDTHGQTLRFAPPLVITEDEIDLIVREFRAVLEQRLTRHA
>LR134406.1|VEH69369.1|708314_708692_+|Predicted-methylated-DNA-protein-cysteine-methyltransferase
MPDAAAELTIERVLCAVECIPIGRVVSYGDLAELVGTSARRVGAIMASAGPGVPWWRVVNASGRLPGHLVAEASRRWADEGTPAVDGRCVMSQARADLPRLAADHEARLAEWASPARDLTSSAVQ
>LR134406.1|VEH69370.1|708674_709991_-|beta-hexosaminidase
MQLLKSSYRDPLPEASGSAGAFPGGATNRLRTSKPTGGDFGSLRRFAAAAACASVLTGCAAGPAAPPTEPATAAGTPSTSTPETPPSPAPTPAAVRCRAKADSLTTEQQAGQLFMIGVSTSGLDSATRKAIASGSVGSVVLLGDNNAGAGQISGITSELGTMRSAGIPLLVAVDQEGGRVQRLKGPGFSDIPNAVEQGSLADGQLRNRAQAWGGELAAAGIHYDLAPVADVVPRNKQSSNAPIGKLNRNFGNNVTAVSRSVVEFTQGMQDAGIVTSLKHFPGLGEVTVNTDHGVARDGDTTADGESLEPFRKGIEAGADSVMISSAIFTRIDPDQEGVFSRKIVTDMLRGDLGFQGVAISDDLGEAAAVGNVKPGDRAVRFFAAGGDLLINADPSLMDEMLKATITWAAENPGNADRLAESAGRVLALKESAGLLNCG
>LR134406.1|VEH69371.1|710075_710543_-|Uncharacterised-protein
MLYDYDEDEQSRNGAKNPKGYSPMPKQNDTASAPAARPRLIQRLRGSGPSELHPLVFLEALLVGVFVCISTADVYHLGRDAAITVGIIVGILLIVMLFIPFLGPLIGIAFSLLWGFLGYALGSSFARGIGPVNSMIIGGVAALIGFSVSLKAHLS
>LR134406.1|VEH69372.1|710687_711530_+|alpha/beta-hydrolase-fold
MMRMRHFTVDLNRERSATLEAVLFDAPSPEEQPTPLEHPRPAVIIAPGGGYMMLSQRESDPVAVAFLRRGFNVFVLRYSLREHAAYPNPAIDAAQAVRWIRAHAGEVGVDPRQVNLLGFSAGGHVAALLGTHWNRDDLVAAERAEYEATGRGDLLRHGSRPDALVICYGALSVDWVDGDEEILRTAARVDCISAVTGETPPAFVWTTGQDEVVPPSQSLRFVTALAEAGVPFEYHHFQWGCHGLSTADELCDADRESLPVNVASWVDLAANWLRKIGEEK

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Crispr_ID: LR134406_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134406_8

2401723-2401826

Orphan

Consensus_repeat	Method
AACATCCTGACAGCAGCATTCCCCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134406_8

>merge|LR134406|8|2401723-2401826|CRISPRCasFinder
AACATCCTGACAGCAGCATTCCCCAAACCAGCCGCGTCAACACAAGCAGCTGCCACAAGCAAAATCGATCAGGTCAAGAACATCCTGACAGCAGCGTTCCCCAA

>LR134406|8|7|2401723-2401826|CRISPRCasFinder
AACATCCTGACAGCAGCATTCCCCAA	ACCAGCCGCGTCAACACAAGCAGCTGCCACAAGCAAAATCGATCAGGTCAAG
AACATCCTGACAGCAGCGTTCCCCAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134406.1\|VEH70878.1\|2412514_2414320_+\|Conjugal-transfer-protein-traG	unknown	unknown	gnl\|CDD\|367119
LR134406.1\|VEH70863.1\|2398222_2398843_-\|50S-ribosomal-protein-L5	unknown	unknown	gnl\|CDD\|178791
LR134406.1\|VEH70866.1\|2399982_2400687_+\|GAD-like-domain	unknown	unknown	gnl\|CDD\|370173
LR134406.1\|VEH70873.1\|2406513_2406783_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH70869.1\|2402146_2402473_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372577
LR134406.1\|VEH70875.1\|2407704_2409537_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|237537
LR134406.1\|VEH70872.1\|2405338_2406517_+\|Flp-pilus-assembly-protein,-ATPase-CpaE	unknown	unknown	gnl\|CDD\|223531
LR134406.1\|VEH70860.1\|2396959_2397502_-\|50S-ribosomal-protein-L6	unknown	unknown	gnl\|CDD\|235495
LR134406.1\|VEH70865.1\|2399215_2399584_-\|50S-ribosomal-protein-L14	unknown	unknown	gnl\|CDD\|180117
LR134406.1\|VEH70871.1\|2403118_2404747_-\|Peptidoglycan-endopeptidase-RipA-precursor	unknown	unknown	gnl\|CDD\|366703
LR134406.1\|VEH70877.1\|2410984_2412502_+\|Type-IV-secretory-pathway,-VirB4-components	unknown	unknown	gnl\|CDD\|273346
LR134406.1\|VEH70861.1\|2397530_2397935_-\|30S-ribosomal-protein-S8	unknown	unknown	gnl\|CDD\|234658
LR134406.1\|VEH70876.1\|2409533_2410988_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH70859.1\|2396576_2396960_-\|BL22	unknown	unknown	gnl\|CDD\|235524
LR134406.1\|VEH70870.1\|2402469_2402859_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372649
LR134406.1\|VEH70864.1\|2398842_2399214_-\|50S-ribosomal-protein-L24	unknown	unknown	gnl\|CDD\|234566
LR134406.1\|VEH70868.1\|2401182_2401581_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH70874.1\|2406805_2407708_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH70862.1\|2398027_2398213_-\|BS21	unknown	unknown	gnl\|CDD\|181216
LR134406.1\|VEH70867.1\|2400528_2400939_-\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134406.1\|VEH70878.1\|2412514_2414320_+\|Conjugal-transfer-protein-traG	gnl\|CDD\|367119	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.	4.29334e-43
LR134406.1\|VEH70863.1\|2398222_2398843_-\|50S-ribosomal-protein-L5	gnl\|CDD\|178791	PRK00010, rplE, 50S ribosomal protein L5; Validated.	1.00625e-128
LR134406.1\|VEH70866.1\|2399982_2400687_+\|GAD-like-domain	gnl\|CDD\|370173	pfam08887, GAD-like, GAD-like domain. This domain is functionally uncharacterized, but it appears to be distantly related to the GAD domain pfam02938.	4.39419e-31
LR134406.1\|VEH70869.1\|2402146_2402473_-\|Uncharacterised-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	6.8383e-09
LR134406.1\|VEH70875.1\|2407704_2409537_+\|Uncharacterised-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	2.70801e-08
LR134406.1\|VEH70872.1\|2405338_2406517_+\|Flp-pilus-assembly-protein,-ATPase-CpaE	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	4.84456e-10
LR134406.1\|VEH70860.1\|2396959_2397502_-\|50S-ribosomal-protein-L6	gnl\|CDD\|235495	PRK05498, rplF, 50S ribosomal protein L6; Validated.	1.72522e-106
LR134406.1\|VEH70865.1\|2399215_2399584_-\|50S-ribosomal-protein-L14	gnl\|CDD\|180117	PRK05483, rplN, 50S ribosomal protein L14; Validated.	1.82754e-83
LR134406.1\|VEH70871.1\|2403118_2404747_-\|Peptidoglycan-endopeptidase-RipA-precursor	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	8.61332e-39
LR134406.1\|VEH70877.1\|2410984_2412502_+\|Type-IV-secretory-pathway,-VirB4-components	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	1.13414e-08
LR134406.1\|VEH70861.1\|2397530_2397935_-\|30S-ribosomal-protein-S8	gnl\|CDD\|234658	PRK00136, rpsH, 30S ribosomal protein S8; Validated.	9.01363e-79
LR134406.1\|VEH70870.1\|2402469_2402859_-\|Uncharacterised-protein	gnl\|CDD\|372649	pfam13613, HTH_Tnp_4, Helix-turn-helix of DDE superfamily endonuclease. This domain is the probable DNA-binding region of transposase enzymes, necessary for efficient DNA transposition. Most of the members derive from the IS superfamily IS5 and rather fewer from IS4.	3.28405e-08
LR134406.1\|VEH70864.1\|2398842_2399214_-\|50S-ribosomal-protein-L24	gnl\|CDD\|234566	PRK00004, rplX, 50S ribosomal protein L24; Reviewed.	6.25491e-34
LR134406.1\|VEH70859.1\|2396576_2396960_-\|BL22	gnl\|CDD\|235524	PRK05593, rplR, 50S ribosomal protein L18; Reviewed.	1.89085e-55
LR134406.1\|VEH70862.1\|2398027_2398213_-\|BS21	gnl\|CDD\|181216	PRK08061, rpsN, type Z 30S ribosomal protein S14.	1.82276e-33

>LR134406.1|VEH70868.1|2401182_2401581_-|Uncharacterised-protein
MFLVFYRIDDDMCFLVSDTGSEPRIATENHSHIQVMLSFPGLLSGAGFLVEESNSWFVLTADGRIDRPVTPHDLPGGELVGALERLIGLMQRRQRLHRLSSLLLSLVRIKPVLSDKPDDDLLLKAGAVCFDC
>LR134406.1|VEH70867.1|2400528_2400939_-|Uncharacterised-protein
MAGCRDQLAFLWGGGVPHQNLVPITGESRAETISGHQTRTGSMYHGCCGRAGSCNSKPYWFLLLILCLCLFWFVCVRVRHDGFLSLPRAVRGLVVLGDDLFDERVTKGGHQIGSYFWFGVLSQKRHMRYSGFLGKK
>LR134406.1|VEH70866.1|2399982_2400687_+|GAD-like-domain
MGAYFKHRGGPLGVGEAASREVLERFEGVFPASILQIWRTVGFDGIANGRHWITNPLEWAPAVESWLEGLELPFPEQQWWCIARTPLGSMQLWGETSGPALNIVSVFGFLYPDSDSHRSMLDPVMRERSGCVSLLTPLKDAARDDVSRRRLVDEGFKKFGSLGPDEVFALVPAYCLTGRLDASLLAKEPAVAHVAFLGQNTEPEIRPDLMASFGDALVEQIVTQDNQPPNSSGQ
>LR134406.1|VEH70865.1|2399215_2399584_-|50S-ribosomal-protein-L14
MIQQESRLKVADNTGAKELLCIRVLGGSKRRYAYLGDIIVATVKDAIPGGNVKKGEIVKAVVVRTAKERRRGDGSYIKFDDNAAVILKSDGEPRGTRIFGPVARELREKKFTRIASLATEVI
>LR134406.1|VEH70864.1|2398842_2399214_-|50S-ribosomal-protein-L24
MNSLHVKKGDRVKVIAGKDKGKTGEIIAVDPRAQKVTVEGVNVVKRHKRESQGANGRRIEGGIISFEAPIHVSNVQLVTKIDGKEVVTRVGYQRVDVTKRRSDGSEYQAQRSVRIAQKTGKEI
>LR134406.1|VEH70863.1|2398222_2398843_-|50S-ribosomal-protein-L5
MSNDIEIPRLKKKYREQIVPALREEFKYANVMQIPGLTKIVVNMGVGEAARDSKIIDGAVRDLTVITGQKPTITRARKSIAQFKLREGMPIGCHVTLRGNRMWEFADRLLTLALPRIRDFRGLNGRQFDGKGNYTFGLNEQVMFLEIDQDKIDRVRGMDITFVTSATNDQEGRALLKHLGFPFKAVDDPKPVKGGRGPAFQPRKKK
>LR134406.1|VEH70862.1|2398027_2398213_-|BS21
MAKTALKVKQSRKPKFGVRAYTRCKRCGRPKSVYRKFGLCRVCLRDLAHAGQLPGVTKSSW
>LR134406.1|VEH70861.1|2397530_2397935_-|30S-ribosomal-protein-S8
MTMTDPIADMLTRLRNANQAYQESTSMPSSKIKVGIAEILKAEGYISNFELTEVEGQVGKVLKVTLKYGDSRERSIAGLRRISKPGLRVYAKANALPKVLGGLGIAIISTSQGLLTDKQANAKSVGGEVLAYVW
>LR134406.1|VEH70860.1|2396959_2397502_-|50S-ribosomal-protein-L6
MSRIGRLPIAVPSNVEVKIDGQDVAVKGPKGELKFTVREPITIAKNEQGELQVSRPDDERLSRSLHGLTRTLVSNMVTGVTQGYEKKLEIVGVGYRVVAKGPTQLEFALGFSHPVVVNAPEGITFTVETQTKFTVHGIDKQLVGETAANIRKIRKPEPYKGKGVRYAGEHVRRKAGKAGK
>LR134406.1|VEH70859.1|2396576_2396960_-|BL22
MAISLGIRKGLAAKTASRARRQLRGRKKINGTAERPRMVVTRSARHLYVQVIDDTAGRTLVSASTMEADLRAAEGDKSAKARKVGEIIAQRAKEAGIENIVFDRAGNKYHGRIAALADAAREAGLGF
>LR134406.1|VEH70869.1|2402146_2402473_-|Uncharacterised-protein
MKAINLCGWQDLLDSSDATWIADTAYIATTAIAPIKKLPNQSRTSHDKDFNTAIARIRVNVEHCIAQLKTWRILSHGYHGRLKELPGIIHLVTNLKILRTYTHNQPRE
>LR134406.1|VEH70870.1|2402469_2402859_-|Uncharacterised-protein
MDLSRCRIPLRDQVVACLLILRQNLPRMVVADLLGVSQPTISRIWRRITVLLEAVLLFLPGGLAEAIQQGHLILIDGTHAPYREPPSQRATATTTPGNARSSASMSRSPPPTAVTSSPSLTWCRDPDMT
>LR134406.1|VEH70871.1|2403118_2404747_-|Peptidoglycan-endopeptidase-RipA-precursor
MRLVKIFGMCLLLMFVMPLMTAVLGSVSPSERRNQEKNCSPSDGAASSAWSVPMGAAYRVTAQFGPRVSPITGAPDMHTGIDLASPAGDAPVLAATAGEVVRIENLGNRSYGLWVEINHGGGTTTRYAHLSSVSVRVGDRVNTGQQIAVEGKSGGVTGPHLHFEIRHDGEAVDPAKELMERFGFSFDGVPGITFNGSRAITADDVAAFLPNPQGVDQSGSLTEEQIANATAIVETGQKLGLPPKAWAIALMTALQESTLGADKSTTTPNSDVDVGIFQQRAKVGWYADGLSVEQNTAILNDVRYAAATFYQGHDMSLIAYGLNPEGAAGPPGYHLPGLIDIKDWMNRKDLGEIAQAVQKSDFPRHYTKHEATVAALLPRINTGIGSYECAPAAEGIPSNGTAGEQVAAYAMTQIGVPYSWGGGDETGPTKGFCCSPGGKDGSAIVGFDCSGLVLWAWSKLGVKLPHESSAQQRMTAPVAKENIQAGDLLFFPGHVGIADGKGGMIEAPRPGLAVRVTPDVLNDPHYGPLFTGAGRPSLPNKP
>LR134406.1|VEH70872.1|2405338_2406517_+|Flp-pilus-assembly-protein,-ATPase-CpaE
MSDASVPRGGGRGPGLTALRAPAPHQVEQDQFEARQPLSLPVDPPDGQTMVSAEPELEEEPISASSVSLEPDLPPGPEPTKAPNLVLSKSFSASASALSSSLRALGDMAPPAGWRRWLRLGPSKKALEAAARKAKLLATFDETLTIAVASPKGSAGKTPTARGIAAAFGAARGGGVVAVDLNELRGTLGQRSVITHDRHIGHLVEAADYLLGHRARTVEIERCMNRQPDSFEWVLTSDPTTTEPMSDEDFTKIHTVLKRFYPILVIDTGNAELASSWRSAAAVADLIVVPMKWRADHIAPASRMLEGMLARGEQVGGRVVIVGTNGVKEADPLARAKALEHFHGLPIVEIPVDPALNGQIIRWNSLSDSTKVAFETLGATLSDLAQAQGVTR
>LR134406.1|VEH70873.1|2406513_2406783_+|Uncharacterised-protein
MKDLFKDLSPSFGPFAKVFDSWVSTTLALVWACGFVFAAYHLIIAVGAIASARRHHRADGEATVGRLVWPGLSLIALALVPTIYAALVS
>LR134406.1|VEH70874.1|2406805_2407708_+|Uncharacterised-protein
MVRVVTDNRPDPAAMKRRRPFVFLLAAVMALLLVFAFWLGTRTGQNPSAGGSAPATASESSTPTPPRYMTVDGEVVPGLWRGTATVGSGNSKAIYGIPYGWPRTIDGAVGAAMNIEAAFYSLPAMVENTAAQLFPKLYTGAALEEVLKGKSYVWFRKKGREMAGMNDDGVVLDLNGKPSKEKRFYGGGIPQYGAYIVRSCEKDSTGQPSRVEVAVLIPMYGGTGTDDDMSNVHLQFKQINNSLVWVDGDWRSETSGSVENVWKKKVSNQGWEHLKSLVGEGWAVPADATQEPFEGAVLTQ
>LR134406.1|VEH70875.1|2407704_2409537_+|Uncharacterised-protein
MRKLLVTAFGILLAAFILGNISAHADQGQGEKKSCIPWWAEISGEICPPDRDDPPMMPVDPTPTAAPTATEPPPSASVEPPTPPPSEAPSPPPPSASSNPSPTTAAEEWAEEAAKSAGELASRVGIGAGSRDGDWGSGIGETFGVTFSIGLVIFAVVMIMMLARASRGHYSPEARSEFADALPKIAIYVPLMLSTPTAVHWVSTLGKDLSESFANEIGNSFGDMMRAMGGSMLRGGVFGFIGGAVLALIILFVLLIAMLVWFIEDCVAEYALYILTILIPISTALSLWPSNKRLRWRLIGAIAGCALVPAVSRFAYWIMSKFMVTNVFSGTLDMATMVKAIVVIAMSTSMPIILGYIMPALSPYGAPGSDGAAGPWQSHVKESPQNVQEGGRKTQQGVDRLMQRFRDGKNTTTGTGGSTSSGSMAGGSSGAATGASGSLAGGNATGASGGAATGAGSGAAAGGTAATGAAVGLGAAAGVVAGVVIAAKVGADAAKGAARESALRMNAAVGIGYATDPDTSGPSSPRRHQETPQQQNAGSSGSVEGEPEPSSHDDGAGEEPSHKYGPKFSNYEEDIPRRQEPSASPPFSRTSPKPAGPPPGNRPPDSWRTP
>LR134406.1|VEH70876.1|2409533_2410988_+|Uncharacterised-protein
MSIGNTFRLGGVTPVPWLSKGKIAILLFLIGIGVILLIVVIRTSNLFVVLGLAITVGAFVLVWRRKASDGSTWVLGVGEQIRYWIGKRARWDDFDPVREAQPFLLMDPLRLLAVPASDGSELAVLDYPEAMVCVLEISGHRTGVQPADDLAREQRKMNAVHKTLADPKVAIDQVDWLTLVRPENPEEIAMGVQVADDLPETIKAAAEELSWMIASHTETMYSYLVIRFNKDLLYERVAKPPFSEFSGAEAAYDAVSIVARKLETNGIFVKGALGPAEVSALIRAIVVPHRSPYDLEGCEEGIFASCPSWIRQDTMLFSSCDDRSWWHASASFGLFDWPLSPVRGRWLEPLVFGVGLGPRTVVSQVKIIRRHKAREFAKDQLTTAASERLKNDESGKVDAGEAWSQETVATEVAQDIVLNGQVGIIPAVRIMISANSPRGVKNAMADVASIADDSMNAEGITMDDTRPGVGLLHCLPLGMEVPSR
>LR134406.1|VEH70877.1|2410984_2412502_+|Type-IV-secretory-pathway,-VirB4-components
MTTTLTPSSSTAKLEMTSSKKRRFRRQKKTTKTVPSKPISKLFSRAGDSFGIWWRRIWYRFGRGSAMRLLVKTFGWHYPAVKGTFASSKQTPALMTVLTNTDLDYHGDPLGVNLWTNQAILESAWTLYSDGWINSPNQCILGALGTAKSTYVKTILLRSMMHGGRAVVFDRKRQAQNGRTQGEYVKLADTIGGTTIRFHQARDQGTRINILDPAIVQMTTAGSDSLLGQDRLLIMVAEAALETKLTSEQRHALKVAHQSALDAADLKRRVPVLADVIHALQNPCTTGVKGVDLDRLREWGLPVVLGLMRYIDGDLAGLIDGETTGPGGEPVDFASRLLVFDTSALEYGSTALGLMMTVTTAFLLSVWVNMPGEKSLVIEEAYSADGIGVVPAMLRDLAKRTRGVGASMISVFHHVSDVPVDSPLRSLITESELVSIFRQDKGADVDAAVELLSLDPSTRQLIQELPRGVHLRKRGPKLPLVVAELTRTNLDRYITFTDDAYVVNN
>LR134406.1|VEH70878.1|2412514_2414320_+|Conjugal-transfer-protein-traG
MFPFGLSLTTLLLIMGGILLGVVALGVLLGVLLPSFGVPRAAAKNLDEQRTKSANWARYKDVKKDLASPSEPDPRRLPLCRLNGKSLSNRPYRSIQVIAPSGAGKTPRVVVPAVLGHFGPAVITSIKGDVLELTRAARAAQGKIWVFDPSCSLGPTARWSPLGHIRTWADALDAARWIQESSKANSGTGGIQDHAFWDAQARFLLAPLMYMTALAGNTMGDVADLVVGGQETEDFITKQLQNFPESGPRTYWARFMGLENKTKSSVLITAATVLECWTHPKIAEAVNVPVGDRNILNLDDFLAGNNTLYLVAPATAQAQFTPIYESLINAITMRVEQEYSRRGSIALNPPLLLALDEAANIAPLRRLDYLASAGAGQGIMVLSIWQDEGQQIEIYGQAKARTISANHYAKIYLSGIQDHQTLSNLSEQIGRAVMQQTSTSRYRDGTSTTTSYQELAVAPPSWIRQLALGKAIIILGHYPPILGEVTAWYEDKNMRNLIPDEVAERFDRAFGTFPKKKLKKSLTSNASPGTQVSFPSVQSSSMGNDSSPGVMPTYGNFGPRKKGVNAGLSDPANSPKLPTQQQRDESAQGWFVNDYRKNLNG

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Crispr_ID: LR134406_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134406_9

2649347-2649437

Orphan

Consensus_repeat	Method
CCAGATCCCTCACCCGCGCGGGGCGAACAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134406_9

>merge|LR134406|9|2649347-2649437|CRISPRCasFinder
CCAGATCCCTCACCCGCGCGGGGCGAACATCGTTGCAAATGGTGGTGGAACACCACCGCTGCCAGATCCCTCACCCGCGCGGGGCGAACAT

>LR134406|9|8|2649347-2649437|CRISPRCasFinder
CCAGATCCCTCACCCGCGCGGGGCGAACAT	CGTTGCAAATGGTGGTGGAACACCACCGCTG
CCAGATCCCTCACCCGCGCGGGGCGAACAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134406.1\|VEH71097.1\|2652312_2652963_+\|Nitrogen-regulation-protein-C	unknown	unknown	gnl\|CDD\|225107
LR134406.1\|VEH71095.1\|2650858_2650984_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71096.1\|2651111_2652302_+\|Sensor-histidine-kinase-desK	unknown	unknown	gnl\|CDD\|226951
LR134406.1\|VEH71094.1\|2649862_2650852_+\|UDP-glucose-4-epimerase	unknown	unknown	gnl\|CDD\|224012
LR134406.1\|VEH71086.1\|2643986_2644589_+\|HTH-type-transcriptional-repressor-KstR2	unknown	unknown	gnl\|CDD\|224228
LR134406.1\|VEH71102.1\|2659452_2661666_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71099.1\|2655291_2655975_-\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|213222
LR134406.1\|VEH71087.1\|2644629_2645760_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71084.1\|2641033_2643682_-\|Putative-membrane-protein-ydgH	unknown	unknown	gnl\|CDD\|225272
LR134406.1\|VEH71090.1\|2646728_2647331_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|293792
LR134406.1\|VEH71091.1\|2647324_2647951_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71103.1\|2661880_2662243_-\|Excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
LR134406.1\|VEH71083.1\|2638394_2641037_-\|X-X-X-Leu-X-X-Gly-heptad-repeats	unknown	unknown	gnl\|CDD\|224428
LR134406.1\|VEH71092.1\|2648062_2649235_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71098.1\|2653458_2655171_-\|Aerobic-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223651
LR134406.1\|VEH71100.1\|2655971_2656838_-\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|213222
LR134406.1\|VEH71085.1\|2643741_2643936_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71101.1\|2656834_2659456_-\|FtsX-like-permease-family	unknown	unknown	gnl\|CDD\|223650
LR134406.1\|VEH71088.1\|2645940_2646348_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71089.1\|2646344_2646674_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|316153

Protein	Function_ID	Function_description	E-value
LR134406.1\|VEH71097.1\|2652312_2652963_+\|Nitrogen-regulation-protein-C	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.10544e-65
LR134406.1\|VEH71096.1\|2651111_2652302_+\|Sensor-histidine-kinase-desK	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	9.36569e-39
LR134406.1\|VEH71094.1\|2649862_2650852_+\|UDP-glucose-4-epimerase	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	2.54707e-131
LR134406.1\|VEH71086.1\|2643986_2644589_+\|HTH-type-transcriptional-repressor-KstR2	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.42154e-12
LR134406.1\|VEH71099.1\|2655291_2655975_-\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.09033e-97
LR134406.1\|VEH71103.1\|2661880_2662243_-\|Excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	7.68559e-20
LR134406.1\|VEH71084.1\|2641033_2643682_-\|Putative-membrane-protein-ydgH	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	2.01282e-108
LR134406.1\|VEH71090.1\|2646728_2647331_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	8.81723e-49
LR134406.1\|VEH71083.1\|2638394_2641037_-\|X-X-X-Leu-X-X-Gly-heptad-repeats	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	9.45683e-45
LR134406.1\|VEH71089.1\|2646344_2646674_+\|Uncharacterised-protein	gnl\|CDD\|316153	pfam13601, HTH_34, Winged helix DNA-binding domain.	1.88373e-26
LR134406.1\|VEH71100.1\|2655971_2656838_-\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.46754e-88
LR134406.1\|VEH71101.1\|2656834_2659456_-\|FtsX-like-permease-family	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	4.54457e-06
LR134406.1\|VEH71098.1\|2653458_2655171_-\|Aerobic-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	7.23632e-160

>LR134406.1|VEH71092.1|2648062_2649235_-|Uncharacterised-protein
MTPEELIRIVSLHPAVVEVPQPQPERFVELGVVYFRMNDGRGLGINPDIFPAGGTGIPEQELVSQVHQHLEEAWQQSINRPPLDLANVVPIVRDASYFMDRGGARVALVGKLTDFIGIGLVIDEPSSMRVITEDELPQPRTDVEDLQFLSRAFENFGALAHDILVQDMGYDSDVIAVKNPPAYEVSWFAQAAYVAKALAYYSWKTGTPWVAIPAFRKDLWLVNSTTRHWGELMDLLEPNIDARERVHPVPHVVVDGRWQEYVPQLEPATRRRLQTLKFNAENVVHRACRDALQRHGETRVDLMSDFLGTFAGDDVVTFSEVPLDLEATSIPRVDLVDFMDGGNTIHRVWFERLVAELPHLVRPHPQSYPPRFIIGRPGPEDRARLAAIQL
>LR134406.1|VEH71091.1|2647324_2647951_+|Uncharacterised-protein
MVRPVAWPRPIPEGHSWRALVGDGWPAHVRVLHPASRRIDGVEHPVRWQEIAPEGVSIATAGWSEVSGIGLHEGAAGPGWDHEPDIGPSPLILSVLLRQMLPGVPEGRVWTGEWDGWGNRKRPAGSRPLTVPGRRYHVTAMSPRKLLTELNPDRLPDVVWDEAGTFIILADIDLPSTVVGCQKGIAERLLRNPGLEAVRVDGAAPVVT
>LR134406.1|VEH71090.1|2646728_2647331_+|hydroxyacylglutathione-hydrolase
MNIEKLITEAPGQPDFTNNAWIVGDDREVIVIDPAHQPDRIALAVGDRKVRAVLLTHGHWDHVTAAPAFAALMGDPPVHLNPADEFLWRETHPHEAFRPIADGDEFTVAGVTLRAVVTPGHTPGATCFVTDGVVFTGDTLFEGGPGATRWDYSDFDRIIASIRERLFILPDDTVVNTGHGPSTTIGKERPHLDEWIARGW
>LR134406.1|VEH71089.1|2646344_2646674_+|Uncharacterised-protein
MSTEHPRHKLVDEFTNPVRFSLVAGLAGVEQIDFATLRNHLQVSDSVLSRQASQLEGLGIVAVRKGYIGKRPRTWFSLTPKGRKLWKSHLAALRAIAEDSVLAASGDGS
>LR134406.1|VEH71088.1|2645940_2646348_+|Uncharacterised-protein
MTEHPSPTSEEAANLLRQAETTLTHTRGNAGWPTITAQMSMGAATSVYLLASRDTQFDAVSFIGMMVWVLAPLILVVAFAKVAKNGFGIRWGLYMAVWALCWSISMFFPTAAVRVPLAAVIAVASFVGALVEARR
>LR134406.1|VEH71087.1|2644629_2645760_-|Uncharacterised-protein
MTHPAVVEVLDAPQPGEPDSGMLMLRLEDEQVIGIDPRLAEPAHTDEPEAARIARVHRAVDVMSASGEAGEKDLETVVPLVRSADYFVAQGQLAPAAVGWLTEFIGFGLAIDEPTTLRVVSESDLPGDRIAEYDIELQGRAIGNLRLMEEAMAFSEMGLGPDVLTLTTPPGNEAAWFADAAAMEELLGRLGERTGTAWAVIPARRNDVFLVNVATDRWDDLLDDLEEAVVARDGIHPLPHVVANRRWQLSLPPRTSQLGQRLQRLRQRAEGRTYNVLKDAIRKDYDHYVSDYEDLYALDDELFSMAFVPEGVPGASIPVVDVIAFECGHSVLDVPYTEVVGQLPHLVKPHPGTHPPRVIVAHPSEEDYARLGSLTL
>LR134406.1|VEH71086.1|2643986_2644589_+|HTH-type-transcriptional-repressor-KstR2
MTDLTPRREATVGRLVEAAITQFAARGIDATSVEQLCDAAGFTRGAFYSNFTSKDDLCTAVIERYRDNVLASLSETIAELPPEADVKTVASTTLEHFLKVLAPSREMKVTLTEIRLRALRSPGLAAQLEQLSEETRPALVGFIESLAARMDVKFVLPTEHILTVFDALYSYEIQGYNKDSVRQLLTPLAISLISASGKPQ
>LR134406.1|VEH71085.1|2643741_2643936_-|Uncharacterised-protein
MNRTARSSFFPGTPRPAGLVSDIPSRPYWGPGRAGTIAGIVVRFVVFLVRGAAVFRADSGFSRI
>LR134406.1|VEH71084.1|2641033_2643682_-|Putative-membrane-protein-ydgH
MSAQLYALGRWCFRHAKLVLASWLVIVLAVGGAALAFGGGFADVFKIPGSPSQVALDKLKMTFPQGAMTQAAAIFVAPEGGRVEDFRGVIEDTISELEAIDFVDSATSPWNERISGMVSDDGRAAIVAILIDVKGAPSNEQLAQLTAVAERMAQRLPQGATLDMGGQAFNIELPRLSVTEIAGLGVALVVLTLVLGSLVASGLPLLTAVTGVGVTMAVMLLIARLASINSTTPMLAVMLGLAVGIDYALFILSRHRNQLGEGMTAEESTARAVGTAGSAVVFAGLTVFIALLGLGVSGIPFLTVMGAFAALAIVLAVFIALTMLPALMGLLGERLRPRPKKPRRRRKPRGGGAFAWWGRVTTGHPVVVLLVVVVCLGALTIPGLGLRTALPNSGQHTEGAPDRVTYDLISQHFGVGRNGPLVLTADVISSKDPLKLVADLKEEVEAIDGVAAVPLATPNQNAEVAMLQVVPTTGPDDPATADLVQTLRDRHDQWLERYGVETAVTGMTAMQIDVNSRLVGALLPFGMLVVGLSLVLLAAVFRSVWVPVKATLGFLLSVGAAFGATKLVFNDGHLTQMVNLERGMPVISFLPILLMGILFGLAMDYEVFLVSRIREEYVHGKKPVDAIRDGMAASGPVVVAAAVIMFSVFAFFVPEGISSIKQIAFALAVGVAIDAFCVRMTLVPAVMALLGKRAWWLPRWLDKALPTFDVEGEVLTEKLKLARWPGGDHLLYAEEVAVEGLLPPTSLVLEAGNVIGVAGPVSSRTGLALALSGRLSITSGRARVAGELLPGAATAVHRRTRYADLANDPAALSALRPIPGSVAFVDSVETLDVGDERLAGLIDRFRGDGTSALVLCASSESILETLPVDGVFVVDQPVRSIR
>LR134406.1|VEH71083.1|2638394_2641037_-|X-X-X-Leu-X-X-Gly-heptad-repeats
MRPESIHSGHRLGWPGLVVLALVPLLAVGTLLGLVRGSNNQGIRAAVVNHDKAVTVDGRIVPLGRQLASEMVAREGTNISWTIADAEDAEAGLNDGRYSAVVTIPEGFSEAATSFSSNDAAIAKQATISVVVSKNAPFADAALAHDIAGLATDTINATLTKAYLENIYIGFNRVGEQFKQIVDGAGKLNEAGSQLADGATTAANNSEKLAGGLGELSAQGKQLGSAANTLAEGSQKLSGAAGTLAGGAGNLANGTRSFAGGIAQLNAQAPRLADGVNQLTDGATPLLEGVSGYTSGTVGVLDGVSELRNGLAQLEAGLNSQLDPEAMKEAQAALGQLVPTLREAQQALKQYFPGASNITIEEVRSKLAAFDAQLNKLDSTLAGYASGETPPPSELKEFAQRLVANWKCPIEDAETCKLLREAYQQGVGDALNKGFQQGAKAALGVLQQTDPKTGKTLLETARGFSRMGLGMTESVIKLRDALAKVVPAGTDPLTALEQLPSKITEQAQKLTGGVAKLREGADTILTKAEPLRTNAEQLGTGATQLLGGLRQLRNQTSALPAATARLAEGANQLASGSSQLADGAGQLSSGVGQLSSGAGQLADGTGKYVTGVGQAADGATQLAAGLLRLGAGSRELSQGLGAFHDKLSEAGSKLPNYSDSDRDTLSQVVASPVLKDGKVYEAMMVPLAALLAVAALWLGSLLSWSFARPVPSDLIASSRTSATLWLRTLWPPAALGAVQGLLFGVAVGMALELTPGRTIGAAALLTMVGVSFAVVNHALTGWFGNVGRGISVLALVVTVALGLTSTTPGWVQGVAGISPLHNGLLLVRTFLVSGSGLVALGGAALLFGVIAVGLSYLAIASRRHLTADQFRSRVVGVAGV
>LR134406.1|VEH71094.1|2649862_2650852_+|UDP-glucose-4-epimerase
MKVLITGGAGYIGSTVASACEDAGHDVVILDDFSTGRREFIGERPLYEGDIADDSLLDRLFGEQRIDAVVHCAAKIIVPESVSEPLAYYENNVAKTVTLLAALQRNGVERFLFSSSASIYAPDENFVVTEDSPLQPGSPYARTKFMVELILEDFTRASDVRVASLRYFNPIGTDPKLRSGQQLEKPSHVLAKLLEAWVNKETFTVTGVDWPTRDGSGIRDFIHVWDLARAHVAALEHFDEATATNPYQVFNIGTGNGVTVKELAASFEKITGDPLKVRFGDPRPGDVAGVYTVSTKAKDVLGWEAELTETDAVRDAIAWLPVRKESLGY
>LR134406.1|VEH71095.1|2650858_2650984_-|Uncharacterised-protein
MIRKLFWAILLLAGICVATSLLDRRRAKQRRQLWTEATDPS
>LR134406.1|VEH71096.1|2651111_2652302_+|Sensor-histidine-kinase-desK
MMADLSETHRRLLLDAGTALGTFLLLVLPLVALGIPEEAAVIGWSTLMVASLAFRRVNPLLAVVVCAVAGTGMVLQVPSPVPAMLVVLVIVFSAARHLSATAGLVVIPLGIAASILGPLSWLGRIPEGQRFLAGGLLSLLCLSLMINAYLLGRRVAVQNHVTRLDEALAEERFLAGARSAQDATELAEDRARTEVARELHDVVAHSLSVIVVQAEGAKALATKKPEAAVEALNVIARTGRSSIGEMRRIVSLLRGESDASFGPSPSLPQIPEMVAKAGPRITLEMPEELPPVPESLGLTAFRVVQESVTNFLKHAGPTARATATITCELEAIDIRVTDDGVGVQAPTEGRGAGVRGMRERVAAMGGTFKAGPRTGGGYEVRARLPLPSQLGRGWLK
>LR134406.1|VEH71097.1|2652312_2652963_+|Nitrogen-regulation-protein-C
MIRVLLADDQSLVRSGFRMLIDSADDMETVGEVSNGADAVMVVKSQPVDVVLMDIRMPIMDGTEATRQITELGGETKVLVLTTFDLDEYVFAALRNGASGFLLKDALPDDLLGAIRTVAGGGAVVAPTATRRLLDHVAPKLPAGKPRDDSRLDGLTEREREVLMEVARGANNTEIGSRLYMAEGTVKTHIGRLLAKLQARDRVGLVLIAHECGLLD
>LR134406.1|VEH71098.1|2653458_2655171_-|Aerobic-glycerol-3-phosphate-dehydrogenase
MTVLSQEQRATSLEAMTSQKFDVLVIGGGVTGAGIALDAAARGLSTAVVDAQDWAAGTSSRSSRLVHGGLRYLYNLDFKLVAEALRERGRLLTTIAPHLVEAQPFLWPLKTPVIERAYSAVGVGMYDALARIGSKGRKTVPIQRHLSKAGAMRRFPEIKRNALVGAIEFYDARVDDARLVITLIRTAVKYGAAAASRVKVTEVLKDGRGRACGVKAVDLENGNEFTIEADRIINATGVWTEQTQELAGGTGGLKVLTSKGIHIVIPRERLKATTGLFLRTEKSVLFIIPWQHYWVIGTTDTAWHEQLKHPVPTSEDIDYVLDHANEVLDPPLTRDDIIGTYAGLRPLLQPKVLDESKSTKVSREHTVTEVIPGMVAIAGGKLTTYRVMAEDAVNFALGQSLAKARPSVTAQLPLLGAEGFDAVENQARRLGVKYGFDADRLHHLVRRYGSELPDLFAAIDEDPSLGKPLEAAPQFLRAEVHRACAVEGALHLEDILVSRVRLNSEARDRGGAAVDEVAEIAAAVLGWDEARLEQEKSNYRERIAAELAAEEQPTDATASAARMVAEDIVG
>LR134406.1|VEH71099.1|2655291_2655975_-|Lipoprotein-releasing-system-ATP-binding-protein-LolD
MSVLRGVGLGRRYGSGQTAVEALAGVDVEVRAGRLTVVRGPSGSGKTTLLNLLGGLDRPTSGRVLLGDDVLSELSEAELAAARRDRIGYVFQNFGLIPVLSAAENVEVPLRLRRMERGQRDERVAEVLELVGLTRHAGQRPGELSGGQQQRVGMARALVARPEVLIADEPTGQLDSETAERIMDLILEVTRIRGTATVVATHDPLLISRADEVLELRDGRVVAGHPG
>LR134406.1|VEH71100.1|2655971_2656838_-|Lipoprotein-releasing-system-ATP-binding-protein-LolD
MNVPQIWCEDLVRIYSTDGIEVQALQGLNLSIDEGDVVALVGASGSGKSTLLGILSGNDRPTGGRARVAGVELTTMNRAQRVDYQRHVAGFVRQRTSSNLLPYLSAAENVALPMVIAGRRERDKRVRELLGLLGVSGCADRRPAQLSGGQQQRVAIAAALANDPRVLLADEPTGELDQENSAQVLEVMRRAAENLGTTVLIVTHDRGVSSHVRRTVAIRDGRTSTEVIRRRITGPDGRESTLAEEYTVIDRAGRIQIPQEHVIRLGLKDRVRILGEEDHITVRRGEGR
>LR134406.1|VEH71101.1|2656834_2659456_-|FtsX-like-permease-family
MKLSRLARRMFIADIWAPLLLALFVAVVSGLVTLAPRALAQADAEYLASRVGEVSAVRGDLRARWDTEVAVGGSGTDDPWGVWFDSLNRLRAAQPEPLRGLLGSPQILAHLGAQSVFVPQGTEFYQVRVTLTANPEMTSQFELVSGRWPQPGVSPQTGNVEVVLPDDVAARIGKRAGDALGEGIALVGTVRIADPAAPRWRFDPSLQLEQEVDPNSGTAAAVAAFMAPEDLLNVAAESGTRVGFFVWYPLDAASLAAGRVSLPELRTQLVGFQSDVREVVPADALEPALKRQEARFDTGLTEVLDGIVKQQCTTASLVAVVVAGPVGVAVALMLVAVRMVLQRHRATLVITRSRGASPRQLRVWAAGWGLLAGMPAALLGHLAATLLVPFDIGAWQWLPTIVAGLLPAAMLALGVEATTPTGRKDLSVSGGGRWRIAAEVAVLAGAALACWQLFTRDAGSDAGIDWLATLTPLALAAAGCVAALRFYPLPLTGLVRWFRRGPGLTGFLGTTRALRAPTAGGVPAMAVVLGAAVAVAGVGLFGTVSHGARAAVWQDVGAAVKLSGPRITDDLLAKVRAIDGVVAAGRLFFTGNQRDLKGHDVRLWLAEPELARVWTQGIDTQPPREFWEDGEPKMLTSEGIGRDTASLAELGRARLVGSLPALPGAGETGDWALARTDQWRASPGSPTILLVATGPGVDPAAIAAQLQELEPYAQVLTAADGLAAVAAHPALSLLQRIFAVSGALAGVFAVAAVLLVQVMGGPDRLRLLAVLRTMGATGEQARGVTAWELGPLVGVALSLGVGLGLGTGWLLVSCLDLSGLTTGNHRPAWHPDLVALAAVVAALVCGAAAAVVVSARAAGRASLSRVLRIGEEG
>LR134406.1|VEH71102.1|2659452_2661666_-|Uncharacterised-protein
MGLLAVLLALSAVVAGVLSGVLGRAAFEEGTAARRALTVDGTAGAEIVTRRAADPAVQDETVRRIIGSCFGDVPVEVTRDVVADPAVIAGASEAEPFARWTIRPEPARIAAEHLDPLARGATALRQQLRSSEVGVRGVQVLGDLEKTATSAARNLAVARALSWIPSGLLAIVAALAVSRVTRLLAITRETETLQLLGRGATGGQVLFANLVEAGVVALAGSLAGSGLAWAVLTLFGGVPVAPVLAGGAATLVLVLGCVALAGIGRLRGPGRDETSRLRAGRLRTAVAATSLVLIAGGAGLASAQLLRVGSTIRWDRERPVPDWLATAAPALLLLLAALVAVALLGPLARLAEVVLLRGRGLTGALAAAQVARNLGAFAVAAVATVLAVGTTLLAAGYDGTAPPLQQRLRNLAAGAPVVADLREADAEVGRLASQPSTPVWRYPEASIGPVALTAIAADIPGLAAVSGQNLPEGLGTQPPGPRLPVAITPRLAEETGLAVGDEFQIQLFSRHLLAVVAANVEAVPGTTRSNALLADAGSLRRALESRGAELPAPSQLWLSPVGEEAREAADRLRGMPGVSAVTVTPTEAAPDDPSRLVASRFRSAALGSVVLAVLGIGAVAFTQAGMRRGQVAVLHALGADAGSQVRGRVLELLGVVVFAAAFGAGASWLLCRALMAGLASGVVAPGTVSLPVEPRIESAWPGALLAVFVFLIAATTWALGRVIRGQIRDGHLREETP
>LR134406.1|VEH71103.1|2661880_2662243_-|Excinuclease-ABC-subunit-A
MAGNPPSVPIAISVFGARVHNLKNIDLKNIDVEVPLGKFVAVAGVSGSGKTTLVLEALVPALRSLAEDTPLPAPVTSIDARDARRVVIATGTPTQVSADTGPAGSATGRYLAAHLAHHPR

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Crispr_ID: LR134406_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134406_10

2897234-2898080

TypeI-A

Consensus_repeat	Method
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CRISPRCasFinder
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CRT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	PILER-CR

11 spacers

csa3,cas2,cas1,csb2gr5

The CRISPR arrays of LR134406_10

>merge|LR134406|10|2897234-2898080|CRISPRCasFinder,CRT,PILER-CR
GCCTCAATGGAGTCCGACCCAGAAGGCCGGAACAATGCTGTGTCTGCTGAGCAGGCGCAAGCCAAAACCGTCCGTCTCAATGAAGTCCGACCTAGAAGGCCGGAACAATTCTACGGCGACAAGTACCTTGACGGCTACATTGCTGCGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATTTGCCCCGGTTGGGTTCAGGTTGTGATCCAGTACTTTGGCGTCTCAATGAAGTCCGGCTTAGAAGGCCGGAACAATGCAGTCGGCAATCCACCATACTTCCGGAACCGTTGATAGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATGCCGGCGTACATGCCCCCCAGCCCTCAGGACATTGTCCGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCTGCCGTGGAAGCACTTCGTGGCCTGTCGCTCCCCTGTGGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATGCCGTCGCTCGGGACGTCGAGAAGGGCTTCATCGTAGGGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCCAGTAAGTACGCTGACTATGAGGAGGTGCGGGGGTGACGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCAAGCAAGCCTATGACTGGTACAAAGAGTACGTGGACGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATACGCATATGTGGCGGCACAGGGATGCTGCGCTGGTTGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCGGCTGGGAGGCCCTCAACATCCCAGCCCAGTGCGAGTCTCAATGAAGTCCGGCCTAGTGGCGTGGCGTTTA

>LR134406|10|9|2897234-2898009|CRISPRCasFinder
GCCTCAATGGAGTCCGACCCAGAAGGCCGGAACAAT	GCTGTGTCTGCTGAGCAGGCGCAAGCCAAAACCGTCC
GTCTCAATGAAGTCCGACCTAGAAGGCCGGAACAAT	TCTACGGCGACAAGTACCTTGACGGCTACATTGCTGC
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	TTGCCCCGGTTGGGTTCAGGTTGTGATCCAGTACTTTGGC
GTCTCAATGAAGTCCGGCTTAGAAGGCCGGAACAAT	GCAGTCGGCAATCCACCATACTTCCGGAACCGTTGATA
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	GCCGGCGTACATGCCCCCCAGCCCTCAGGACATTGTCC
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CTGCCGTGGAAGCACTTCGTGGCCTGTCGCTCCCCTGTG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	GCCGTCGCTCGGGACGTCGAGAAGGGCTTCATCGTAGG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CCAGTAAGTACGCTGACTATGAGGAGGTGCGGGGGTGAC
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CAAGCAAGCCTATGACTGGTACAAAGAGTACGTGGAC
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	ACGCATATGTGGCGGCACAGGGATGCTGCGCTGGTT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATC

>LR134406|10|3|2897234-2898080|CRT
GCCTCAATGGAGTCCGACCCAGAAGGCCGGAACAAT	GCTGTGTCTGCTGAGCAGGCGCAAGCCAAAACCGTCC
GTCTCAATGAAGTCCGACCTAGAAGGCCGGAACAAT	TCTACGGCGACAAGTACCTTGACGGCTACATTGCTGC
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	TTGCCCCGGTTGGGTTCAGGTTGTGATCCAGTACTTTGGC
GTCTCAATGAAGTCCGGCTTAGAAGGCCGGAACAAT	GCAGTCGGCAATCCACCATACTTCCGGAACCGTTGATA
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	GCCGGCGTACATGCCCCCCAGCCCTCAGGACATTGTCC
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CTGCCGTGGAAGCACTTCGTGGCCTGTCGCTCCCCTGTG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	GCCGTCGCTCGGGACGTCGAGAAGGGCTTCATCGTAGG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CCAGTAAGTACGCTGACTATGAGGAGGTGCGGGGGTGAC
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CAAGCAAGCCTATGACTGGTACAAAGAGTACGTGGAC
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	ACGCATATGTGGCGGCACAGGGATGCTGCGCTGGTT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CGGCTGGGAGGCCCTCAACATCCCAGCCCAGTGCGA
GTCTCAATGAAGTCCGGCCTAGTGGCGTGGCGTTTA

>LR134406|10|4|2897236-2898008|PILER-CR
CTCAATGGAGTCCGACCCAGAAGGCCGGAACAATGC	TGTGTCTGCTGAGCAGGCGCAAGCCAAAACCGTCCGT
CTCAATGAAGTCCGACCTAGAAGGCCGGAACAATTC	TACGGCGACAAGTACCTTGACGGCTACATTGCTGCGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATTT	GCCCCGGTTGGGTTCAGGTTGTGATCCAGTACTTTGGCGT
CTCAATGAAGTCCGGCTTAGAAGGCCGGAACAATGC	AGTCGGCAATCCACCATACTTCCGGAACCGTTGATAGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATGC	CGGCGTACATGCCCCCCAGCCCTCAGGACATTGTCCGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCT	GCCGTGGAAGCACTTCGTGGCCTGTCGCTCCCCTGTGGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATGC	CGTCGCTCGGGACGTCGAGAAGGGCTTCATCGTAGGGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCC	AGTAAGTACGCTGACTATGAGGAGGTGCGGGGGTGACGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCA	AGCAAGCCTATGACTGGTACAAAGAGTACGTGGACGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATAC	GCATATGTGGCGGCACAGGGATGCTGCGCTGGTTGT
CTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134406.1\|VEH71317.1\|2894031_2894502_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71325.1\|2902823_2902946_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71329.1\|2905069_2906734_-\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LR134406.1\|VEH71313.1\|2890951_2891248_+\|putative-septation-inhibitor-protein	unknown	unknown	gnl\|CDD\|377706
LR134406.1\|VEH71311.1\|2889469_2889787_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71322.1\|2901213_2901303_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71321.1\|2898112_2899192_+\|Transcriptional-regulators	unknown	unknown	gnl\|CDD\|315923
LR134406.1\|VEH71320.1\|2895835_2896840_+\|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
LR134406.1\|VEH71330.1\|2906736_2908233_-\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
LR134406.1\|VEH71318.1\|2894622_2895387_-\|Domain-of-uncharacterised-function-(DUF364)	unknown	unknown	gnl\|CDD\|377194
LR134406.1\|VEH71319.1\|2895494_2895839_+\|HTH-type-transcriptional-regulator-CmtR	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
LR134406.1\|VEH71326.1\|2904142_2904274_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71324.1\|2902692_2902839_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71312.1\|2890094_2890862_-\|Bacterial-protein-of-uncharacterised-function-(DUF881)	unknown	unknown	gnl\|CDD\|377575
LR134406.1\|VEH71323.1\|2902037_2902199_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71314.1\|2891251_2891929_+\|Phosphatase-YfbT	unknown	unknown	gnl\|CDD\|319829
LR134406.1\|VEH71327.1\|2904361_2904523_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71315.1\|2891970_2893491_+\|Lysylphosphatidylglycerol-biosynthesis-bifunctional-protein-LysX	unknown	unknown	gnl\|CDD\|234778
LR134406.1\|VEH71328.1\|2904781_2905066_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
LR134406.1\|VEH71316.1\|2893504_2893969_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|235668

Protein	Function_ID	Function_description	E-value
LR134406.1\|VEH71328.1\|2904781_2905066_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.09011e-19
LR134406.1\|VEH71320.1\|2895835_2896840_+\|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	4.37132e-87
LR134406.1\|VEH71313.1\|2890951_2891248_+\|putative-septation-inhibitor-protein	gnl\|CDD\|377706	pfam06781, CrgA, Cell division protein CrgA. CrgA is a trans-membrane (TM) protein, first described in Streptomyces as being required for sporulation through the coordination of several aspects of reproductive growth. In Mtb (Mycobacterium tuberculosis ) CrgA is a central component of the divisome, and consists of 93 residues with two predicted TM helices (TM1: residues 29-51; and TM2: residues 66-88). CrgA facilitates the recruitment of the proteins essential for peptidoglycan synthesis to the divisome and also stabilizes the divisome. Reduced production of CrgA results in elongated cells and reduced growth rate, and loss of CrgA impairs peptidoglycan synthesis. CrgA has homologs in other actinomycetes.	1.52893e-28
LR134406.1\|VEH71329.1\|2905069_2906734_-\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	7.13698e-105
LR134406.1\|VEH71330.1\|2906736_2908233_-\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	3.15991e-27
LR134406.1\|VEH71318.1\|2894622_2895387_-\|Domain-of-uncharacterised-function-(DUF364)	gnl\|CDD\|377194	pfam04016, DUF364, Putative heavy-metal chelation. This domain of unknown function has a PLP-dependent transferase-like fold. Its genomic context suggests that it may have a role in anaerobic vitamin B12 biosynthesis. This domain is often found at the C-terminus of proteins containing DUF4213, pfam13938. The structure of UnioProtKB:B8FUJ5, Structure 3l5o, suggests that the protein has an enolase N-terminal-like fold and this Rossmann-like C-terminal domain. Structural and bioinformatic analyses reveal partial similarities to Rossmann-like methyltransferases, with residues from the enolase-like fold combining to form a unique active site that is likely to be involved in the condensation or hydrolysis of molecules implicated in the synthesis of flavins, pterins or other siderophores. The protein may be playing a role in heavy-metal chelation.	1.18018e-35
LR134406.1\|VEH71312.1\|2890094_2890862_-\|Bacterial-protein-of-uncharacterised-function-(DUF881)	gnl\|CDD\|377575	pfam05949, DUF881, Bacterial protein of unknown function (DUF881). This family consists of a series of hypothetical bacterial proteins. One of the family members YlxW from Bacillus subtilis is thought to be involved in cell division and sporulation.	6.98095e-52
LR134406.1\|VEH71321.1\|2898112_2899192_+\|Transcriptional-regulators	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.84281e-16
LR134406.1\|VEH71316.1\|2893504_2893969_-\|Uncharacterised-protein	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	0.00160491
LR134406.1\|VEH71319.1\|2895494_2895839_+\|HTH-type-transcriptional-regulator-CmtR	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.94629e-15
LR134406.1\|VEH71314.1\|2891251_2891929_+\|Phosphatase-YfbT	gnl\|CDD\|319829	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). This subfamily includes Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). GPP1p and GPP2p are involved in glycerol biosynthesis, GPP1 is induced in response to both anaerobic and hyperosmotic stress, GPP2 is induced in response to hyperosmotic or oxidative stress, and during diauxic shift; overexpression of DOG1 or DOG2 confers 2-deoxyglucose resistance. These belong to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.09939e-44
LR134406.1\|VEH71315.1\|2891970_2893491_+\|Lysylphosphatidylglycerol-biosynthesis-bifunctional-protein-LysX	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0

>LR134406.1|VEH71320.1|2895835_2896840_+|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MSEHHDHDTHNHEHHDESHDHDHHGHGHGHGHSHNHAHGSTNRKRLGIALGITGLIFAAEVIGAIVTDSLALLVDAGHMLTDSLGLVVALIAATLMKRPPSERHTWGWQRAEVLSAGAQSAILLCVGGYAIYEGVLRLFAPPEVEAGGVAVIGVVGLLGNVASLLVLMGGKDSNLNMRAAFLEVLNDALGSVAVIVSAVVIALTGWTRADTIAGLLVAALIVPRALKLLRESGSILLEATPTELDLTKVRQHLLERPHVKEVHDLHASVVSTELPVLTAHVVLADECFTDGHSQEILADIQECLIKHHEIRIEHCTLQLESEKVAEKHKEHLHA
>LR134406.1|VEH71319.1|2895494_2895839_+|HTH-type-transcriptional-regulator-CmtR
MTMKETETPDTEMAATLFRSLADPNRLAIVKHLMLSEHRVADLVGHLGLAQSTVSAHVRGLRDSGLLTARVRGRATFYSLAEPELTTNLLAAADDLLVATGEVPVICEPEVEAP
>LR134406.1|VEH71318.1|2894622_2895387_-|Domain-of-uncharacterised-function-(DUF364)
MPNPWEIYDALTDAIPEEVTLTTVNVGAQWTRVINSAGGIGMAWTMNVKTRPDIFPGVTLDGIPLREAAGLIRSWNLAESSIGQAAINSWHSRPETAEANGFVSTGQGINWSMVFDPYATDVAGKKVAVVGHFPFAQKALEAAGEYICLERNPQPGDYPDSACEYLLPECDYVFISGSSFVNKTAPRLIELSRNAHTVLVGPSVPLNPLLFDHGVDTITGFVSPNPQQLDRALAGVNMKGMFAAGYRVHQHRPA
>LR134406.1|VEH71317.1|2894031_2894502_-|Uncharacterised-protein
MIVYKGWGVLGILLPLLGVGLMCGIASLFNPSNAVYLKFALIGVVVGSVGTWFVGQWLNQKRPRVKLARWMEERRKELCSLVDQGQFQLAPGVPLPASAEEGYAQVEQKVQQEASEVLPKMTNQHSLYWVPLHWEGIWTGSAALIYFVASFFMSWP
>LR134406.1|VEH71316.1|2893504_2893969_-|Uncharacterised-protein
MIIFRGWGLLGAAFPALTAFALGALPASMYGSKSAITNIVAALGALVGGALGFLCGRWLNVIRPRAKVAEWQEQRRAELRARVDAGQFQMAPGLQAPSSREEGYAQVEQLITNESPDVLRQLKNIHTLFFIPMQWFAIGVGVVIFFGALSTALR
>LR134406.1|VEH71315.1|2891970_2893491_+|Lysylphosphatidylglycerol-biosynthesis-bifunctional-protein-LysX
MTEARTQATEPIDSEQTTVRKEKRARLLAAGSDPYPADLVRSHTLLQVREGWGHLEAGEETDDVVQAGGRVVFIRNTGKLAFATLQDGFTPGDNGERLQVMLSLAEVGAEALAAWKSDVDLGDHVWVEGRVISSKRGELSVMAKRWRMASKALRPLPVLHKELSEESRVRRRYVDLIAREDARAMVRNRAAITHAIRDTLYRQGYMEVETPQLQLVHGGAAARPFTTHLNAFDIDMSLRIALELHLKRTMVGGADRVYEMGRVFRNEGIDSSHSAEFTMLEAYQSWGDQRTIAQLIQDIIVAAADAVGSRQVETDRGTIDLDGQWRWLPFFDGLSEAVGREITVETSLEELRAVADEHEVEYDPKWNAGKLSLELFGDLVEPGLIQPTFVHDYPSLAQPLARPHRSEPGKIEAWDLIIGGMERGTGFTELIDPVIQRDVLVRQSLAAAAGDPEAMQLDEDFLEALEYGAPPMGGLGLGIDRLVMLLNPGAGIRETILYPLLRPSAG
>LR134406.1|VEH71314.1|2891251_2891929_+|Phosphatase-YfbT
MGWERAGGEAVGLFDAVILDHDGTIVDSRDAMVRAYTRWAGEYGVNLNEMPKYMGMPSRALAEALVLDAKHWDEAAERIEELEVSDTAGVIPMPGAVDAFRVLPGDAVAVATSCTQTLLDARLNAAGLPHPRVVVTRDQVERGKPAPDSFLLAAKRLGVEPSRALVAEDALAGIAAARAGGFPTLGILSTHTADALRADVHVTDLSQVTWDVSDEGIRVIVHDAR
>LR134406.1|VEH71313.1|2890951_2891248_+|putative-septation-inhibitor-protein
MPESKVRKEAKSKARKKQSEELEKARKERRDRKRLAANTERRWVPWVFIPVGLLGVLWMVTWNLAGNYIGFMRALTEWNILIALGLIIACFSLMTLWK
>LR134406.1|VEH71312.1|2890094_2890862_-|Bacterial-protein-of-uncharacterised-function-(DUF881)
MSETRLTRLLRRIRGPRSDENPRSLRGRVGTGIICVLAGTMLTASALAARGTDLRSDRNTDLRGLVATQAQRNEQLRKEVAEVRSEVEELGHKQGASPELERQQRAVAEQAAAVPVTGPGMRVTLTDAPTDVKPAGVDDDALVVHQQDIQAVVNALWKGGAEAVSIQGQRIITTSGIKCVGNSVVLHGIPYAPPYVIEAIGDAGRMAAALKESRALTIYRQYADAYGLGYKETKESSLSLPAFQGALGITHAKPK
>LR134406.1|VEH71311.1|2889469_2889787_-|Uncharacterised-protein
MAAENLLGLTLKEGSESGYRRPLGKPEFTEVRRVFSLGDDDRQEVFDRAVAFAKESGWKKDFESGLPPNMVWNGQKNNPRRECGVFISDNDAADLMIRLRVFDEP
>LR134406.1|VEH71321.1|2898112_2899192_+|Transcriptional-regulators
MANKPAPALPLRDGDQAILEKVVRSSATTAGAAQRARIVLLASQGVANALISELVGVSRPTVNLWRGRYLEHGLEGLVDIPRPGRPKVVDDAAIITATLRPPPKRLGVTHWSSRLLAPRLGVHKSTVTKAWKKYGIRPWKADTFKFSTDPELEAKVTDIVGMYLNPPANAIVLCVDEKSQIQALNRTQKVLPMQPGHNEQRSHDYVRHGTTTLFAALEIATGKVTGLCKDRHRHQEFLGFLKHVARAYPEQELHLVMDNYAAHKRVEVRNWLTANPRIKVHFTPTSGSWLNLVEVWFGIIERQAIRRGTFVSVRELIGKIREFINSWNNRKHPFIWTKTPDEILAKINRKRKLTSTPRH
>LR134406.1|VEH71322.1|2901213_2901303_+|Uncharacterised-protein
MESGLDGRNNDAELLYVRALQYASQWSPA
>LR134406.1|VEH71323.1|2902037_2902199_+|Uncharacterised-protein
MAGTMLGNKIRKPGVRKVSMESGLDGRNNGLCDVDKDVTPEVSMESGLDGRNN
>LR134406.1|VEH71324.1|2902692_2902839_+|Uncharacterised-protein
MAGTMDIEAAFDALSTAVSMESGLDGRNNGTTVASSFPITEGSQWSPA
>LR134406.1|VEH71325.1|2902823_2902946_+|Uncharacterised-protein
MESGLDGRNNIVKNPYLCLVVIVSMESGLDGRNNMIFTRS
>LR134406.1|VEH71326.1|2904142_2904274_+|Uncharacterised-protein
MESGLDGRNNLWASLQEATEFRVSMESGLDGRNNPRQTSSLNG
>LR134406.1|VEH71327.1|2904361_2904523_+|Uncharacterised-protein
MESGLDGRNNEPHIMADRGDKNGLNGVRPRWPEQSKYQGATNAQIIKSQWSPA
>LR134406.1|VEH71328.1|2904781_2905066_-|CRISPR-associated-endoribonuclease-Cas2
MARRRYLISYDISDPKRLRATFNLMKGYGKWLQYSVFVCDLSKAELAMWERDIRDVIALAYDSVVVIDLGAPQDADIRMLGVPRRLPDEGPVVV
>LR134406.1|VEH71329.1|2905069_2906734_-|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO
MPAQGEYSAEPQLVPARMLNELVYCQRLFHLEWVDGRWAHNDDTIQGSVAHDATDRRSGRMPAPDEEEKPFTSIQVALSDPDLGVTAVIDRVDHEDGSSSPVDMKKGSGPREGGMWPADRVQVLTQAVLLRRAGYSVNRADISYLGSHHRASIEVGQDAETEVRELVALARKVAAQELPPPPLLNDPRCLRCSLAPLCMPDETNYLLERSGEQPRRIIVKNPDARPVYVNTQGASVKVSGGRLLVAVKGETVAERRLLDVSQVCVVGNVQITTQALRALWRRGAMVIWLSYGGWLDGWSQGPMNGHVTLRRRQVLASVHGLRFAQQMIRGKIHNQRVLLRRNAKVSLDDSVLEQLKELEAKTESAASLETLLGIEGTAARLYFGQFHKLLSPRLEVAAEFQAHGRARRPPPDPVNAVLGFCYSLLTKDLVAVLTGVGLDPFLGVLHQPRYGRPALALDLAEEFRALVAESVALQCLNNGEINEKSFMRGHLGVALTADGRRSVIQAHERRLEMELKHPLFGYQVSYRRVLDLQARVLAASFTGELDSYTPLMTR
>LR134406.1|VEH71330.1|2906736_2908233_-|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MDRWGEVTVPTQVALRFVTGKYHANGWDHALNEGISEWPPSPWRLLRALISVWHTRCDDIPEEMIDDLLTGLATEPPEYLLPAARPSQTRHYMPNPDFLEGVKHSTSLQLDPRLNLDGEAEVVIRWPNLTLPAGQRDALERLLRKLPYLGRAESRCEAWLLSDEHSQQEKGWVRPSETGNTQVLVPEPGVTRKQLETSSLEMRKARLRYPSGSRWVRYELPGEALSAPAHCEVNDLLRPTTVRWRLEPTAPFRVEDGILAAHGLRGRILGTKKENTDLREQGSGVEALAGHHGVFDDGPQHRHSHWLWLPTLGAGGELTGQVEDLVLWVPDGIPADTLSRLAGARYLPRWSNAPKGYRSGAELHLQLMGPVDTVMHEYTSADATTWVSVTPFLTDRFPKQNKPREEFAQKLVERELGFRHPGGTPPVRVKLLADWENRDVVRFRRYRWNESMARRRRGMLLRLDFDEPLPKGLGERPEPLVLGSLSHFGFGLFRPVER

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Crispr_ID: LR134406_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134406_11

2899244-2904609

TypeI-A

Consensus_repeat	Method
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	PILER-CR
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CRISPRCasFinder
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CRT

73 spacers

csa3,cas2,cas1,csb2gr5,cas7,cas8u1,cas3

The CRISPR arrays of LR134406_11

>merge|LR134406|11|2899244-2904609|PILER-CR,CRISPRCasFinder,CRT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCTGCTGGTTGGCGGTGTTGTACGACTTCCACAGGGGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATTGTTTCAGATCCTGTCTTGACAACTTCTCAAGGGACTGTCTCAATGAAATCCGGCCTAGAAGTCCGGAACAATGTGGTGCATGATGCGGATGCGGCTGGTGATCCAGTCGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATGTGGGTTGACGCGGAAATTATGGTCCGCGATTACGTTTTGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAATAATCCACGCGGATTCGTACCCGGAGCCATTGCCGGCGCAGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCATGATGTCCGCCATCATCGACGCCTACAGGCGCGGTGTCTCAATAAAGTCCGGCCTAGAAGGCCGGAACAATCGGCGCTAACTGCAACCCCGCATTGAAAGAAAGGATTGGGTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAATCCAATGCAACCAAACCAAAGGCACCCGCACCCTCAACGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATAGCAACCAACCGGAGCTGGACCTGTGGGGACTCCCTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATAAGCCGAGCACTGGTACAACAACCGCGAGTACGGTACGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGAACCTCCACGTTTTGGGTCCTGATAGGAATTACTATGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGAGGGGTGCATCAATCGGATTCAGGATGCACACGAGCGGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATTCAAGTTCGCCACCCACCCCTATTCTGCGTTCGAACTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATATCAGCCCTCAACGGCCTTGCGCAACTTGGCTTCACTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCGCGAAGCCCACGCCAACGGCCACACTTGGCGTTCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGGGCGCGGCAGATCTATCTGGTGTCGCGTAACACCAAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGTCTTCGGTAAAGCCTATCAGACCGAGGAAGGTATCTGGAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGGCCTTCATAATGTCAATCACCTTCACCGCGGAATTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGCGGCCCGGCATGATGACTGTCAATGATGCCAACGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCGAGGCCAAAGTCATCGTAGCCTTCCCTGTATGCGTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCCCCCATGTTGCCGACCTTCTCGCCGCCGGCGCGGGGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATATGTTCATCATATGAACCCAATGGACGTCCAGATGCTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGTACGCGAGTTTCTGGCACGTCCCTGAATGGGCGGTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATTAGCCCCAACAGCCTGGGCGACCAGACCGAAGACTGAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATATGAGGGTCGGTGGCACGCTACAGGCGCTCAATTTGCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATTGAAAGACATGCCCATCGCGTATATTCGTCGCCCGCCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATTCGTAAGGACTTTGACCTCCGCCTCGACGAAATCGAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGACGCCGAACTGCTGTACGTCCGCGCCCTGCAATACGCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCCCTCGCGGAGGCAATTCGTTTCTCCTTGTGCTCACGTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCCACGAACGTCGTGAGGAAACCCGAACGGAGACTCCAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGGGGTCCTTGCTCATGGGGCCGGTCCCGAAGGTCACAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGCCTATCGAGAAGTGTTTGGGAGGCCCATGTCAAAGTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGGTCACAGTCAAGGGCCTTGAGGCTTTGGGTGCCTGAAGCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATAGGATTGTAGCCGGTATATGTACCAATGATGTCACTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGAAGCACTGAAGGCCCATATCAAGGGCCTGAATGAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCCCTGTTCGCCGAGGGTATTTTGGTTGACCCTTATTGGGTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATATTCAATCAATAAATTGCAGGGCGGTGCAAGGGATTAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCCTCTCGTACAGCGATATTTACGACTTCTCAAGTGTCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGTTGGGCAACAAAATCAGAAAGCCCGGTGTCCGAAAGGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGGTCTTTGTGACGTTGATAAGGACGTCACGCCTGAAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATTGATTCTTGATTCGTAGTGCTCACTGACTACTTCCTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATAGAATATCGATTGGCCCGTGCCGTGAGCCAGCTTAGCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATTATCCCTCCAACTCCGCGCACCGTTATTTTTCCCGTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATTCGACATGTCATCAAACCCACAAACCCACAAATCAACGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATAAGCAACCTCGGACGGCCAAAGACGTTCCGACATGTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATACGAACCACGCGACAACCGAACGCGAACCCCCTCACGGTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATTGAGGTATTCGGTGGCGGCGAAACGAGAATTGTTCTTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGGACATTGAAGCCGCATTCGACGCCCTGTCGACAGCAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGGGACTACCGTGGCAAGCTCCTTCCCGATCACCGAAGGGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATATCGTCAAAAACCCATACCTGTGCCTTGTTGTGATTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATATGATCTTCACAAGGAGTTGAATGAAAATCCCGTGTTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATATTCCTGGCGGAACTGGCTTGTTGAACAAGGTTACGTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGAACGTGCGGGTGAAGACCGTTGACCAGGTTGCCGTCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATTCGTGTCCACCATCTACATTGATGGGGCCCGCCCCTGGGCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGGGTCCGATTTGGTTGAGTATTTTTATGACATCAATGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATATATCAGCCTGCCGGCCCGTACCCCGTACCATTGCATGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCGTACATGTACTGCCACGCCCAGAAAGTCCTCGTGTCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCCGCCACTGGATAAGAAGAAAATGGCCGGTTACACGAACGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCTGGCAAACGGACCAAGCAGACATCCCTCAGGCCATCAGGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCTGTAGAGGCCGTTGCTCGCCTGTATGGTTTCTCCGAATCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATACGCGCAGTTGCTGAATGAGTATTTTGAGTCTTTCGTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGATTCCCTTGTCGTCCTCCGTCACGGTGTGATGAACGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGAACCAGGACATGGGCGACTATTTGGTTCGTGCAAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATAGTGTCCCACTTGTCTATTGCAGCCTTTGCTTTCGTAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCCTCACCAGCGACGCCATCGGCTTCGGCGACCTTGACCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGAGGTATCAGTGGTTTCCTTGTGAGTGGGAGTCTTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATAAGTTGATCATATTGATGGAATTAAAGCAATTGAGAAAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCTGTGGGCCTCCCTACAGGAGGCCACAGAGTTCCGTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCCGAGGCAGACCTCGTCCTTGAACGGCTGATAGACCTGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATTCGTTCGGCACCGCCGACGCTATTTCTTTCAGAGACGGGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATGAACCGCACATCATGGCCGACCGTGGCGACAAGAACGGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCGAAGTATCAAGGCGCAACCAACGCCCAGATCATCAAGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAATCTTTCTCGACGAGAAGGGGCTTCTTGCAGCAGTTGCGTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT

>LR134406|11|5|2899244-2904609|PILER-CR
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CTGCTGGTTGGCGGTGTTGTACGACTTCCACAGGG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	TGTTTCAGATCCTGTCTTGACAACTTCTCAAGGGACT
GTCTCAATGAAATCCGGCCTAGAAGTCCGGAACAAT	GTGGTGCATGATGCGGATGCGGCTGGTGATCCAGTC
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	GTGGGTTGACGCGGAAATTATGGTCCGCGATTACGTTTT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAATAAT	CCACGCGGATTCGTACCCGGAGCCATTGCCGGCGCA
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CATGATGTCCGCCATCATCGACGCCTACAGGCGCGGT
GTCTCAATAAAGTCCGGCCTAGAAGGCCGGAACAAT	CGGCGCTAACTGCAACCCCGCATTGAAAGAAAGGATTGG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CCAATGCAACCAAACCAAAGGCACCCGCACCCTCAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGCAACCAACCGGAGCTGGACCTGTGGGGACTCCCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AAGCCGAGCACTGGTACAACAACCGCGAGTACGGTAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACCTCCACGTTTTGGGTCCTGATAGGAATTACTAT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAGGGGTGCATCAATCGGATTCAGGATGCACACGAGCG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCAAGTTCGCCACCCACCCCTATTCTGCGTTCGAACT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATCAGCCCTCAACGGCCTTGCGCAACTTGGCTTCACT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGCGAAGCCCACGCCAACGGCCACACTTGGCGTTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGCGCGGCAGATCTATCTGGTGTCGCGTAACACCAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GTCTTCGGTAAAGCCTATCAGACCGAGGAAGGTATCTGGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGCCTTCATAATGTCAATCACCTTCACCGCGGAATT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GCGGCCCGGCATGATGACTGTCAATGATGCCAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGAGGCCAAAGTCATCGTAGCCTTCCCTGTATGCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCCCCATGTTGCCGACCTTCTCGCCGCCGGCGCGGG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATGTTCATCATATGAACCCAATGGACGTCCAGATGCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GTACGCGAGTTTCTGGCACGTCCCTGAATGGGCGGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TAGCCCCAACAGCCTGGGCGACCAGACCGAAGACTGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATGAGGGTCGGTGGCACGCTACAGGCGCTCAATTTGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TGAAAGACATGCCCATCGCGTATATTCGTCGCCCGCC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGTAAGGACTTTGACCTCCGCCTCGACGAAATCGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GACGCCGAACTGCTGTACGTCCGCGCCCTGCAATACGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCCTCGCGGAGGCAATTCGTTTCTCCTTGTGCTCACGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCACGAACGTCGTGAGGAAACCCGAACGGAGACTCCA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGGTCCTTGCTCATGGGGCCGGTCCCGAAGGTCACA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GCCTATCGAGAAGTGTTTGGGAGGCCCATGTCAAAGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGTCACAGTCAAGGGCCTTGAGGCTTTGGGTGCCTGAAGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGGATTGTAGCCGGTATATGTACCAATGATGTCACT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAAGCACTGAAGGCCCATATCAAGGGCCTGAATGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCCTGTTCGCCGAGGGTATTTTGGTTGACCCTTATTGGGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATTCAATCAATAAATTGCAGGGCGGTGCAAGGGATTA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCTCTCGTACAGCGATATTTACGACTTCTCAAGTGTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GTTGGGCAACAAAATCAGAAAGCCCGGTGTCCGAAAG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGTCTTTGTGACGTTGATAAGGACGTCACGCCTGAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TGATTCTTGATTCGTAGTGCTCACTGACTACTTCCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGAATATCGATTGGCCCGTGCCGTGAGCCAGCTTAGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TATCCCTCCAACTCCGCGCACCGTTATTTTTCCCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGACATGTCATCAAACCCACAAACCCACAAATCAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AAGCAACCTCGGACGGCCAAAGACGTTCCGACATGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ACGAACCACGCGACAACCGAACGCGAACCCCCTCACGGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TGAGGTATTCGGTGGCGGCGAAACGAGAATTGTTCTT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGACATTGAAGCCGCATTCGACGCCCTGTCGACAGCA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGACTACCGTGGCAAGCTCCTTCCCGATCACCGAAGG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATCGTCAAAAACCCATACCTGTGCCTTGTTGTGATT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATGATCTTCACAAGGAGTTGAATGAAAATCCCGTGTT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATTCCTGGCGGAACTGGCTTGTTGAACAAGGTTACGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACGTGCGGGTGAAGACCGTTGACCAGGTTGCCGTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGTGTCCACCATCTACATTGATGGGGCCCGCCCCTGGGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGTCCGATTTGGTTGAGTATTTTTATGACATCAAT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATATCAGCCTGCCGGCCCGTACCCCGTACCATTGCAT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGTACATGTACTGCCACGCCCAGAAAGTCCTCGTGTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCGCCACTGGATAAGAAGAAAATGGCCGGTTACACGAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTGGCAAACGGACCAAGCAGACATCCCTCAGGCCATCAG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTGTAGAGGCCGTTGCTCGCCTGTATGGTTTCTCCGAATC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ACGCGCAGTTGCTGAATGAGTATTTTGAGTCTTTCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GATTCCCTTGTCGTCCTCCGTCACGGTGTGATGAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACCAGGACATGGGCGACTATTTGGTTCGTGCAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGTGTCCCACTTGTCTATTGCAGCCTTTGCTTTCGTA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCTCACCAGCGACGCCATCGGCTTCGGCGACCTTGACC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAGGTATCAGTGGTTTCCTTGTGAGTGGGAGTCTT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AAGTTGATCATATTGATGGAATTAAAGCAATTGAGAAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTGTGGGCCTCCCTACAGGAGGCCACAGAGTTCCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCGAGGCAGACCTCGTCCTTGAACGGCTGATAGACCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGTTCGGCACCGCCGACGCTATTTCTTTCAGAGACGG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACCGCACATCATGGCCGACCGTGGCGACAAGAACG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGAAGTATCAAGGCGCAACCAACGCCCAGATCATCAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTTTCTCGACGAGAAGGGGCTTCTTGCAGCAGTTGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT

>LR134406|11|10|2899244-2904609|CRISPRCasFinder
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CTGCTGGTTGGCGGTGTTGTACGACTTCCACAGGG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	TGTTTCAGATCCTGTCTTGACAACTTCTCAAGGGACT
GTCTCAATGAAATCCGGCCTAGAAGTCCGGAACAAT	GTGGTGCATGATGCGGATGCGGCTGGTGATCCAGTC
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	GTGGGTTGACGCGGAAATTATGGTCCGCGATTACGTTTT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAATAAT	CCACGCGGATTCGTACCCGGAGCCATTGCCGGCGCA
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CATGATGTCCGCCATCATCGACGCCTACAGGCGCGGT
GTCTCAATAAAGTCCGGCCTAGAAGGCCGGAACAAT	CGGCGCTAACTGCAACCCCGCATTGAAAGAAAGGATTGG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CCAATGCAACCAAACCAAAGGCACCCGCACCCTCAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGCAACCAACCGGAGCTGGACCTGTGGGGACTCCCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AAGCCGAGCACTGGTACAACAACCGCGAGTACGGTAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACCTCCACGTTTTGGGTCCTGATAGGAATTACTAT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAGGGGTGCATCAATCGGATTCAGGATGCACACGAGCG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCAAGTTCGCCACCCACCCCTATTCTGCGTTCGAACT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATCAGCCCTCAACGGCCTTGCGCAACTTGGCTTCACT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGCGAAGCCCACGCCAACGGCCACACTTGGCGTTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGCGCGGCAGATCTATCTGGTGTCGCGTAACACCAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GTCTTCGGTAAAGCCTATCAGACCGAGGAAGGTATCTGGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGCCTTCATAATGTCAATCACCTTCACCGCGGAATT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GCGGCCCGGCATGATGACTGTCAATGATGCCAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGAGGCCAAAGTCATCGTAGCCTTCCCTGTATGCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCCCCATGTTGCCGACCTTCTCGCCGCCGGCGCGGG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATGTTCATCATATGAACCCAATGGACGTCCAGATGCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GTACGCGAGTTTCTGGCACGTCCCTGAATGGGCGGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TAGCCCCAACAGCCTGGGCGACCAGACCGAAGACTGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATGAGGGTCGGTGGCACGCTACAGGCGCTCAATTTGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TGAAAGACATGCCCATCGCGTATATTCGTCGCCCGCC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGTAAGGACTTTGACCTCCGCCTCGACGAAATCGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GACGCCGAACTGCTGTACGTCCGCGCCCTGCAATACGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCCTCGCGGAGGCAATTCGTTTCTCCTTGTGCTCACGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCACGAACGTCGTGAGGAAACCCGAACGGAGACTCCA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGGTCCTTGCTCATGGGGCCGGTCCCGAAGGTCACA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GCCTATCGAGAAGTGTTTGGGAGGCCCATGTCAAAGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGTCACAGTCAAGGGCCTTGAGGCTTTGGGTGCCTGAAGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGGATTGTAGCCGGTATATGTACCAATGATGTCACT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAAGCACTGAAGGCCCATATCAAGGGCCTGAATGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCCTGTTCGCCGAGGGTATTTTGGTTGACCCTTATTGGGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATTCAATCAATAAATTGCAGGGCGGTGCAAGGGATTA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCTCTCGTACAGCGATATTTACGACTTCTCAAGTGTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GTTGGGCAACAAAATCAGAAAGCCCGGTGTCCGAAAG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGTCTTTGTGACGTTGATAAGGACGTCACGCCTGAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TGATTCTTGATTCGTAGTGCTCACTGACTACTTCCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGAATATCGATTGGCCCGTGCCGTGAGCCAGCTTAGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TATCCCTCCAACTCCGCGCACCGTTATTTTTCCCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGACATGTCATCAAACCCACAAACCCACAAATCAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AAGCAACCTCGGACGGCCAAAGACGTTCCGACATGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ACGAACCACGCGACAACCGAACGCGAACCCCCTCACGGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TGAGGTATTCGGTGGCGGCGAAACGAGAATTGTTCTT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGACATTGAAGCCGCATTCGACGCCCTGTCGACAGCA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGACTACCGTGGCAAGCTCCTTCCCGATCACCGAAGG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATCGTCAAAAACCCATACCTGTGCCTTGTTGTGATT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATGATCTTCACAAGGAGTTGAATGAAAATCCCGTGTT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATTCCTGGCGGAACTGGCTTGTTGAACAAGGTTACGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACGTGCGGGTGAAGACCGTTGACCAGGTTGCCGTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGTGTCCACCATCTACATTGATGGGGCCCGCCCCTGGGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGTCCGATTTGGTTGAGTATTTTTATGACATCAAT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATATCAGCCTGCCGGCCCGTACCCCGTACCATTGCAT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGTACATGTACTGCCACGCCCAGAAAGTCCTCGTGTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCGCCACTGGATAAGAAGAAAATGGCCGGTTACACGAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTGGCAAACGGACCAAGCAGACATCCCTCAGGCCATCAG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTGTAGAGGCCGTTGCTCGCCTGTATGGTTTCTCCGAATC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ACGCGCAGTTGCTGAATGAGTATTTTGAGTCTTTCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GATTCCCTTGTCGTCCTCCGTCACGGTGTGATGAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACCAGGACATGGGCGACTATTTGGTTCGTGCAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGTGTCCCACTTGTCTATTGCAGCCTTTGCTTTCGTA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCTCACCAGCGACGCCATCGGCTTCGGCGACCTTGACC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAGGTATCAGTGGTTTCCTTGTGAGTGGGAGTCTT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AAGTTGATCATATTGATGGAATTAAAGCAATTGAGAAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTGTGGGCCTCCCTACAGGAGGCCACAGAGTTCCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCGAGGCAGACCTCGTCCTTGAACGGCTGATAGACCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGTTCGGCACCGCCGACGCTATTTCTTTCAGAGACGG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACCGCACATCATGGCCGACCGTGGCGACAAGAACG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGAAGTATCAAGGCGCAACCAACGCCCAGATCATCAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTTTCTCGACGAGAAGGGGCTTCTTGCAGCAGTTGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT

>LR134406|11|4|2899244-2904609|CRT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CTGCTGGTTGGCGGTGTTGTACGACTTCCACAGGG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	TGTTTCAGATCCTGTCTTGACAACTTCTCAAGGGACT
GTCTCAATGAAATCCGGCCTAGAAGTCCGGAACAAT	GTGGTGCATGATGCGGATGCGGCTGGTGATCCAGTC
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	GTGGGTTGACGCGGAAATTATGGTCCGCGATTACGTTTT
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAATAAT	CCACGCGGATTCGTACCCGGAGCCATTGCCGGCGCA
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CATGATGTCCGCCATCATCGACGCCTACAGGCGCGGT
GTCTCAATAAAGTCCGGCCTAGAAGGCCGGAACAAT	CGGCGCTAACTGCAACCCCGCATTGAAAGAAAGGATTGG
GTCTCAATGAAGTCCGGCCTAGAAGGCCGGAACAAT	CCAATGCAACCAAACCAAAGGCACCCGCACCCTCAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGCAACCAACCGGAGCTGGACCTGTGGGGACTCCCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AAGCCGAGCACTGGTACAACAACCGCGAGTACGGTAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACCTCCACGTTTTGGGTCCTGATAGGAATTACTAT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAGGGGTGCATCAATCGGATTCAGGATGCACACGAGCG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCAAGTTCGCCACCCACCCCTATTCTGCGTTCGAACT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATCAGCCCTCAACGGCCTTGCGCAACTTGGCTTCACT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGCGAAGCCCACGCCAACGGCCACACTTGGCGTTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGCGCGGCAGATCTATCTGGTGTCGCGTAACACCAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GTCTTCGGTAAAGCCTATCAGACCGAGGAAGGTATCTGGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGCCTTCATAATGTCAATCACCTTCACCGCGGAATT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GCGGCCCGGCATGATGACTGTCAATGATGCCAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGAGGCCAAAGTCATCGTAGCCTTCCCTGTATGCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCCCCATGTTGCCGACCTTCTCGCCGCCGGCGCGGG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATGTTCATCATATGAACCCAATGGACGTCCAGATGCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GTACGCGAGTTTCTGGCACGTCCCTGAATGGGCGGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TAGCCCCAACAGCCTGGGCGACCAGACCGAAGACTGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATGAGGGTCGGTGGCACGCTACAGGCGCTCAATTTGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TGAAAGACATGCCCATCGCGTATATTCGTCGCCCGCC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGTAAGGACTTTGACCTCCGCCTCGACGAAATCGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GACGCCGAACTGCTGTACGTCCGCGCCCTGCAATACGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCCTCGCGGAGGCAATTCGTTTCTCCTTGTGCTCACGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCACGAACGTCGTGAGGAAACCCGAACGGAGACTCCA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGGTCCTTGCTCATGGGGCCGGTCCCGAAGGTCACA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GCCTATCGAGAAGTGTTTGGGAGGCCCATGTCAAAGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGTCACAGTCAAGGGCCTTGAGGCTTTGGGTGCCTGAAGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGGATTGTAGCCGGTATATGTACCAATGATGTCACT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAAGCACTGAAGGCCCATATCAAGGGCCTGAATGA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCCTGTTCGCCGAGGGTATTTTGGTTGACCCTTATTGGGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATTCAATCAATAAATTGCAGGGCGGTGCAAGGGATTA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCTCTCGTACAGCGATATTTACGACTTCTCAAGTGTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GTTGGGCAACAAAATCAGAAAGCCCGGTGTCCGAAAG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGTCTTTGTGACGTTGATAAGGACGTCACGCCTGAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TGATTCTTGATTCGTAGTGCTCACTGACTACTTCCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGAATATCGATTGGCCCGTGCCGTGAGCCAGCTTAGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TATCCCTCCAACTCCGCGCACCGTTATTTTTCCCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGACATGTCATCAAACCCACAAACCCACAAATCAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AAGCAACCTCGGACGGCCAAAGACGTTCCGACATGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ACGAACCACGCGACAACCGAACGCGAACCCCCTCACGGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TGAGGTATTCGGTGGCGGCGAAACGAGAATTGTTCTT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGACATTGAAGCCGCATTCGACGCCCTGTCGACAGCA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGACTACCGTGGCAAGCTCCTTCCCGATCACCGAAGG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATCGTCAAAAACCCATACCTGTGCCTTGTTGTGATT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATGATCTTCACAAGGAGTTGAATGAAAATCCCGTGTT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATTCCTGGCGGAACTGGCTTGTTGAACAAGGTTACGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACGTGCGGGTGAAGACCGTTGACCAGGTTGCCGTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGTGTCCACCATCTACATTGATGGGGCCCGCCCCTGGGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GGGTCCGATTTGGTTGAGTATTTTTATGACATCAAT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ATATCAGCCTGCCGGCCCGTACCCCGTACCATTGCAT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGTACATGTACTGCCACGCCCAGAAAGTCCTCGTGTC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCGCCACTGGATAAGAAGAAAATGGCCGGTTACACGAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTGGCAAACGGACCAAGCAGACATCCCTCAGGCCATCAG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTGTAGAGGCCGTTGCTCGCCTGTATGGTTTCTCCGAATC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	ACGCGCAGTTGCTGAATGAGTATTTTGAGTCTTTCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GATTCCCTTGTCGTCCTCCGTCACGGTGTGATGAAC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACCAGGACATGGGCGACTATTTGGTTCGTGCAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AGTGTCCCACTTGTCTATTGCAGCCTTTGCTTTCGTA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCTCACCAGCGACGCCATCGGCTTCGGCGACCTTGACC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAGGTATCAGTGGTTTCCTTGTGAGTGGGAGTCTT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	AAGTTGATCATATTGATGGAATTAAAGCAATTGAGAAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTGTGGGCCTCCCTACAGGAGGCCACAGAGTTCCGT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CCGAGGCAGACCTCGTCCTTGAACGGCTGATAGACCT
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	TCGTTCGGCACCGCCGACGCTATTTCTTTCAGAGACGG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	GAACCGCACATCATGGCCGACCGTGGCGACAAGAACG
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CGAAGTATCAAGGCGCAACCAACGCCCAGATCATCAA
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT	CTTTCTCGACGAGAAGGGGCTTCTTGCAGCAGTTGC
GTCTCAATGGAGTCCGGCCTAGATGGCCGGAACAAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134406.1\|VEH71317.1\|2894031_2894502_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71335.1\|2915546_2915984_+\|Rieske-[2Fe-2S]-domain	unknown	unknown	gnl\|CDD\|239550
LR134406.1\|VEH71328.1\|2904781_2905066_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
LR134406.1\|VEH71316.1\|2893504_2893969_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|235668
LR134406.1\|VEH71321.1\|2898112_2899192_+\|Transcriptional-regulators	unknown	unknown	gnl\|CDD\|315923
LR134406.1\|VEH71320.1\|2895835_2896840_+\|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
LR134406.1\|VEH71330.1\|2906736_2908233_-\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
LR134406.1\|VEH71318.1\|2894622_2895387_-\|Domain-of-uncharacterised-function-(DUF364)	unknown	unknown	gnl\|CDD\|377194
LR134406.1\|VEH71319.1\|2895494_2895839_+\|HTH-type-transcriptional-regulator-CmtR	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
LR134406.1\|VEH71331.1\|2908211_2909150_-\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	cas7	cd09738_cas7_CAS-I-U	gnl\|CDD\|378223
LR134406.1\|VEH71313.1\|2890951_2891248_+\|putative-septation-inhibitor-protein	unknown	unknown	gnl\|CDD\|377706
LR134406.1\|VEH71329.1\|2905069_2906734_-\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LR134406.1\|VEH71332.1\|2909146_2911342_-\|CRISPR-associated-protein-Csx17,-subtype-Dpsyc	cas8u1	cd09767_cas8u1_CAS-I-U	gnl\|CDD\|274989
LR134406.1\|VEH71312.1\|2890094_2890862_-\|Bacterial-protein-of-uncharacterised-function-(DUF881)	unknown	unknown	gnl\|CDD\|377575
LR134406.1\|VEH71334.1\|2914576_2915452_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71314.1\|2891251_2891929_+\|Phosphatase-YfbT	unknown	unknown	gnl\|CDD\|319829
LR134406.1\|VEH71333.1\|2911338_2913843_-\|helicase-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
LR134406.1\|VEH71336.1\|2915980_2916484_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|223788
LR134406.1\|VEH71315.1\|2891970_2893491_+\|Lysylphosphatidylglycerol-biosynthesis-bifunctional-protein-LysX	unknown	unknown	gnl\|CDD\|234778
LR134406.1\|VEH71337.1\|2918189_2918732_+\|Bacterial-regulatory-proteins,-tetR-family	unknown	unknown	gnl\|CDD\|366102

Protein	Function_ID	Function_description	E-value
LR134406.1\|VEH71328.1\|2904781_2905066_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.09011e-19
LR134406.1\|VEH71320.1\|2895835_2896840_+\|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	4.37132e-87
LR134406.1\|VEH71321.1\|2898112_2899192_+\|Transcriptional-regulators	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.84281e-16
LR134406.1\|VEH71329.1\|2905069_2906734_-\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	7.13698e-105
LR134406.1\|VEH71330.1\|2906736_2908233_-\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	3.15991e-27
LR134406.1\|VEH71318.1\|2894622_2895387_-\|Domain-of-uncharacterised-function-(DUF364)	gnl\|CDD\|377194	pfam04016, DUF364, Putative heavy-metal chelation. This domain of unknown function has a PLP-dependent transferase-like fold. Its genomic context suggests that it may have a role in anaerobic vitamin B12 biosynthesis. This domain is often found at the C-terminus of proteins containing DUF4213, pfam13938. The structure of UnioProtKB:B8FUJ5, Structure 3l5o, suggests that the protein has an enolase N-terminal-like fold and this Rossmann-like C-terminal domain. Structural and bioinformatic analyses reveal partial similarities to Rossmann-like methyltransferases, with residues from the enolase-like fold combining to form a unique active site that is likely to be involved in the condensation or hydrolysis of molecules implicated in the synthesis of flavins, pterins or other siderophores. The protein may be playing a role in heavy-metal chelation.	1.18018e-35
LR134406.1\|VEH71312.1\|2890094_2890862_-\|Bacterial-protein-of-uncharacterised-function-(DUF881)	gnl\|CDD\|377575	pfam05949, DUF881, Bacterial protein of unknown function (DUF881). This family consists of a series of hypothetical bacterial proteins. One of the family members YlxW from Bacillus subtilis is thought to be involved in cell division and sporulation.	6.98095e-52
LR134406.1\|VEH71331.1\|2908211_2909150_-\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	1.20459e-41
LR134406.1\|VEH71313.1\|2890951_2891248_+\|putative-septation-inhibitor-protein	gnl\|CDD\|377706	pfam06781, CrgA, Cell division protein CrgA. CrgA is a trans-membrane (TM) protein, first described in Streptomyces as being required for sporulation through the coordination of several aspects of reproductive growth. In Mtb (Mycobacterium tuberculosis ) CrgA is a central component of the divisome, and consists of 93 residues with two predicted TM helices (TM1: residues 29-51; and TM2: residues 66-88). CrgA facilitates the recruitment of the proteins essential for peptidoglycan synthesis to the divisome and also stabilizes the divisome. Reduced production of CrgA results in elongated cells and reduced growth rate, and loss of CrgA impairs peptidoglycan synthesis. CrgA has homologs in other actinomycetes.	1.52893e-28
LR134406.1\|VEH71335.1\|2915546_2915984_+\|Rieske-[2Fe-2S]-domain	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	1.96444e-13
LR134406.1\|VEH71332.1\|2909146_2911342_-\|CRISPR-associated-protein-Csx17,-subtype-Dpsyc	gnl\|CDD\|274989	TIGR04113, hypothetical_protein_AaLAA1DRAFT_1703, CRISPR-associated protein Csx17, subtype Dpsyc. Members of this protein family are found exclusively in CRISPR-associated (cas) type I system gene clusters of the Dpsyc subtype. Markers for that type include a variant form of cas3 (model TIGR02621) and the GSU0054-like protein family (model TIGR02165). This family occurs in less than half of known Dpsyc clusters.	1.51946e-113
LR134406.1\|VEH71316.1\|2893504_2893969_-\|Uncharacterised-protein	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	0.00160491
LR134406.1\|VEH71319.1\|2895494_2895839_+\|HTH-type-transcriptional-regulator-CmtR	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.94629e-15
LR134406.1\|VEH71314.1\|2891251_2891929_+\|Phosphatase-YfbT	gnl\|CDD\|319829	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). This subfamily includes Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). GPP1p and GPP2p are involved in glycerol biosynthesis, GPP1 is induced in response to both anaerobic and hyperosmotic stress, GPP2 is induced in response to hyperosmotic or oxidative stress, and during diauxic shift; overexpression of DOG1 or DOG2 confers 2-deoxyglucose resistance. These belong to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.09939e-44
LR134406.1\|VEH71333.1\|2911338_2913843_-\|helicase-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	1.18787e-35
LR134406.1\|VEH71336.1\|2915980_2916484_+\|Uncharacterised-protein	gnl\|CDD\|223788	COG0716, FldA, Flavodoxins [Energy production and conversion].	7.06825e-05
LR134406.1\|VEH71315.1\|2891970_2893491_+\|Lysylphosphatidylglycerol-biosynthesis-bifunctional-protein-LysX	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
LR134406.1\|VEH71337.1\|2918189_2918732_+\|Bacterial-regulatory-proteins,-tetR-family	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.06371e-07

>LR134406.1|VEH71321.1|2898112_2899192_+|Transcriptional-regulators
MANKPAPALPLRDGDQAILEKVVRSSATTAGAAQRARIVLLASQGVANALISELVGVSRPTVNLWRGRYLEHGLEGLVDIPRPGRPKVVDDAAIITATLRPPPKRLGVTHWSSRLLAPRLGVHKSTVTKAWKKYGIRPWKADTFKFSTDPELEAKVTDIVGMYLNPPANAIVLCVDEKSQIQALNRTQKVLPMQPGHNEQRSHDYVRHGTTTLFAALEIATGKVTGLCKDRHRHQEFLGFLKHVARAYPEQELHLVMDNYAAHKRVEVRNWLTANPRIKVHFTPTSGSWLNLVEVWFGIIERQAIRRGTFVSVRELIGKIREFINSWNNRKHPFIWTKTPDEILAKINRKRKLTSTPRH
>LR134406.1|VEH71320.1|2895835_2896840_+|Cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MSEHHDHDTHNHEHHDESHDHDHHGHGHGHGHSHNHAHGSTNRKRLGIALGITGLIFAAEVIGAIVTDSLALLVDAGHMLTDSLGLVVALIAATLMKRPPSERHTWGWQRAEVLSAGAQSAILLCVGGYAIYEGVLRLFAPPEVEAGGVAVIGVVGLLGNVASLLVLMGGKDSNLNMRAAFLEVLNDALGSVAVIVSAVVIALTGWTRADTIAGLLVAALIVPRALKLLRESGSILLEATPTELDLTKVRQHLLERPHVKEVHDLHASVVSTELPVLTAHVVLADECFTDGHSQEILADIQECLIKHHEIRIEHCTLQLESEKVAEKHKEHLHA
>LR134406.1|VEH71319.1|2895494_2895839_+|HTH-type-transcriptional-regulator-CmtR
MTMKETETPDTEMAATLFRSLADPNRLAIVKHLMLSEHRVADLVGHLGLAQSTVSAHVRGLRDSGLLTARVRGRATFYSLAEPELTTNLLAAADDLLVATGEVPVICEPEVEAP
>LR134406.1|VEH71318.1|2894622_2895387_-|Domain-of-uncharacterised-function-(DUF364)
MPNPWEIYDALTDAIPEEVTLTTVNVGAQWTRVINSAGGIGMAWTMNVKTRPDIFPGVTLDGIPLREAAGLIRSWNLAESSIGQAAINSWHSRPETAEANGFVSTGQGINWSMVFDPYATDVAGKKVAVVGHFPFAQKALEAAGEYICLERNPQPGDYPDSACEYLLPECDYVFISGSSFVNKTAPRLIELSRNAHTVLVGPSVPLNPLLFDHGVDTITGFVSPNPQQLDRALAGVNMKGMFAAGYRVHQHRPA
>LR134406.1|VEH71317.1|2894031_2894502_-|Uncharacterised-protein
MIVYKGWGVLGILLPLLGVGLMCGIASLFNPSNAVYLKFALIGVVVGSVGTWFVGQWLNQKRPRVKLARWMEERRKELCSLVDQGQFQLAPGVPLPASAEEGYAQVEQKVQQEASEVLPKMTNQHSLYWVPLHWEGIWTGSAALIYFVASFFMSWP
>LR134406.1|VEH71316.1|2893504_2893969_-|Uncharacterised-protein
MIIFRGWGLLGAAFPALTAFALGALPASMYGSKSAITNIVAALGALVGGALGFLCGRWLNVIRPRAKVAEWQEQRRAELRARVDAGQFQMAPGLQAPSSREEGYAQVEQLITNESPDVLRQLKNIHTLFFIPMQWFAIGVGVVIFFGALSTALR
>LR134406.1|VEH71315.1|2891970_2893491_+|Lysylphosphatidylglycerol-biosynthesis-bifunctional-protein-LysX
MTEARTQATEPIDSEQTTVRKEKRARLLAAGSDPYPADLVRSHTLLQVREGWGHLEAGEETDDVVQAGGRVVFIRNTGKLAFATLQDGFTPGDNGERLQVMLSLAEVGAEALAAWKSDVDLGDHVWVEGRVISSKRGELSVMAKRWRMASKALRPLPVLHKELSEESRVRRRYVDLIAREDARAMVRNRAAITHAIRDTLYRQGYMEVETPQLQLVHGGAAARPFTTHLNAFDIDMSLRIALELHLKRTMVGGADRVYEMGRVFRNEGIDSSHSAEFTMLEAYQSWGDQRTIAQLIQDIIVAAADAVGSRQVETDRGTIDLDGQWRWLPFFDGLSEAVGREITVETSLEELRAVADEHEVEYDPKWNAGKLSLELFGDLVEPGLIQPTFVHDYPSLAQPLARPHRSEPGKIEAWDLIIGGMERGTGFTELIDPVIQRDVLVRQSLAAAAGDPEAMQLDEDFLEALEYGAPPMGGLGLGIDRLVMLLNPGAGIRETILYPLLRPSAG
>LR134406.1|VEH71314.1|2891251_2891929_+|Phosphatase-YfbT
MGWERAGGEAVGLFDAVILDHDGTIVDSRDAMVRAYTRWAGEYGVNLNEMPKYMGMPSRALAEALVLDAKHWDEAAERIEELEVSDTAGVIPMPGAVDAFRVLPGDAVAVATSCTQTLLDARLNAAGLPHPRVVVTRDQVERGKPAPDSFLLAAKRLGVEPSRALVAEDALAGIAAARAGGFPTLGILSTHTADALRADVHVTDLSQVTWDVSDEGIRVIVHDAR
>LR134406.1|VEH71313.1|2890951_2891248_+|putative-septation-inhibitor-protein
MPESKVRKEAKSKARKKQSEELEKARKERRDRKRLAANTERRWVPWVFIPVGLLGVLWMVTWNLAGNYIGFMRALTEWNILIALGLIIACFSLMTLWK
>LR134406.1|VEH71312.1|2890094_2890862_-|Bacterial-protein-of-uncharacterised-function-(DUF881)
MSETRLTRLLRRIRGPRSDENPRSLRGRVGTGIICVLAGTMLTASALAARGTDLRSDRNTDLRGLVATQAQRNEQLRKEVAEVRSEVEELGHKQGASPELERQQRAVAEQAAAVPVTGPGMRVTLTDAPTDVKPAGVDDDALVVHQQDIQAVVNALWKGGAEAVSIQGQRIITTSGIKCVGNSVVLHGIPYAPPYVIEAIGDAGRMAAALKESRALTIYRQYADAYGLGYKETKESSLSLPAFQGALGITHAKPK
>LR134406.1|VEH71328.1|2904781_2905066_-|CRISPR-associated-endoribonuclease-Cas2
MARRRYLISYDISDPKRLRATFNLMKGYGKWLQYSVFVCDLSKAELAMWERDIRDVIALAYDSVVVIDLGAPQDADIRMLGVPRRLPDEGPVVV
>LR134406.1|VEH71329.1|2905069_2906734_-|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO
MPAQGEYSAEPQLVPARMLNELVYCQRLFHLEWVDGRWAHNDDTIQGSVAHDATDRRSGRMPAPDEEEKPFTSIQVALSDPDLGVTAVIDRVDHEDGSSSPVDMKKGSGPREGGMWPADRVQVLTQAVLLRRAGYSVNRADISYLGSHHRASIEVGQDAETEVRELVALARKVAAQELPPPPLLNDPRCLRCSLAPLCMPDETNYLLERSGEQPRRIIVKNPDARPVYVNTQGASVKVSGGRLLVAVKGETVAERRLLDVSQVCVVGNVQITTQALRALWRRGAMVIWLSYGGWLDGWSQGPMNGHVTLRRRQVLASVHGLRFAQQMIRGKIHNQRVLLRRNAKVSLDDSVLEQLKELEAKTESAASLETLLGIEGTAARLYFGQFHKLLSPRLEVAAEFQAHGRARRPPPDPVNAVLGFCYSLLTKDLVAVLTGVGLDPFLGVLHQPRYGRPALALDLAEEFRALVAESVALQCLNNGEINEKSFMRGHLGVALTADGRRSVIQAHERRLEMELKHPLFGYQVSYRRVLDLQARVLAASFTGELDSYTPLMTR
>LR134406.1|VEH71330.1|2906736_2908233_-|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MDRWGEVTVPTQVALRFVTGKYHANGWDHALNEGISEWPPSPWRLLRALISVWHTRCDDIPEEMIDDLLTGLATEPPEYLLPAARPSQTRHYMPNPDFLEGVKHSTSLQLDPRLNLDGEAEVVIRWPNLTLPAGQRDALERLLRKLPYLGRAESRCEAWLLSDEHSQQEKGWVRPSETGNTQVLVPEPGVTRKQLETSSLEMRKARLRYPSGSRWVRYELPGEALSAPAHCEVNDLLRPTTVRWRLEPTAPFRVEDGILAAHGLRGRILGTKKENTDLREQGSGVEALAGHHGVFDDGPQHRHSHWLWLPTLGAGGELTGQVEDLVLWVPDGIPADTLSRLAGARYLPRWSNAPKGYRSGAELHLQLMGPVDTVMHEYTSADATTWVSVTPFLTDRFPKQNKPREEFAQKLVERELGFRHPGGTPPVRVKLLADWENRDVVRFRRYRWNESMARRRRGMLLRLDFDEPLPKGLGERPEPLVLGSLSHFGFGLFRPVER
>LR134406.1|VEH71331.1|2908211_2909150_-|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system
MTSTVLNLTLRPAVGFRFQPTGFPDLGAATYQAHVSGEGWVQALHLESPQSMANRLELCTWDPAANDQAEALRGLPYVRVVDAGGGFLTSSRLEAHRLASAYLMDAKIDGGTGRVWLEDRLGLVKGRLVDHRALAKAIFDLDPVSLIHGVFFAQKQWPSQPKIARAITCFIDALDVRPAVSGGVKTDSVNPSNDEGRGAKEGYGMVPHQRVEYTARDITASVVVDHGQIKSYGLGEKSEAVLNALVDFELASLFRQDGLRLRTACHLVVDQDCEDLAKIPTLDEATAKLRQAIDQHGDLAPISELKWTGGGK
>LR134406.1|VEH71332.1|2909146_2911342_-|CRISPR-associated-protein-Csx17,-subtype-Dpsyc
MTTHVFPGLGCVPLINYLAALGVAKGVSEQADPAARFGWRAGVFRMDTEVEDITEFFVRDFVPTPVFSPWNAGSGFGEKDKTPLKYIRMLESSTTARLTSYRDTLAVIRLVLTAKSGKGWSKERLVQELRNRLPDDALPWMDASVVLTAKKTEYPPILGTGGNDGRLDFSTNVHQRLVDVLPELGAEPERSRAWMRDLLWGRSTEKLLAASVGQGDPAGAGTPGSSAFGSADAMVNPWAFILMVEGAMLFAASAAKKLGEQNSRVAIPFTVSSSPDGPIPGSANEDGRGELWAPLLESVTLAELRQVFEEARVSWDGGTANNAVAMYAAAHSFGVNRGISAFQRFGFLKRNGLAFVAVPLDHVEVRSRPEVIMAREPLRRARTFHKASGVASKTAARRFDASVTAFVRDPEWWNGIAMLRAQTELELTALRSRKNREELGHPSKLVPANAVIPVCRELFLKSPEARIAAGIASATFLPPTASQQGGGSGGQPIRRLLVGADPKNPKDPIDPEVMVPGLGVRPTVDVLADLVVWLAQHPGEGTRLARGWLPFLSHRYLVSWTDIHAWVGGLLDDDLVTHHLLAFLAVDWSGGNYMDNVTPDGECLFLDPTLAILQALASGSVRVRETAPDATGVVVGLEPSWSLQLRADRVADVHRAASGVISRGTISLPRTGETDIQVHTHSARISRPGLGPRILAALAAPSKPWALKRSAPEVENTEPYETTDLYEGALQ
>LR134406.1|VEH71333.1|2911338_2913843_-|helicase-Cas3
MMRFSNFTECFRRATRSEGTPDGCDPYRYQVRLADEGFPDALRAPTGSGKTAVVLAYVWRLLFHPDASVRAATPRRLVVLLPSRTLVEQYEETVRGWLDRLGLLDAVGVHVFMGGRDIRSSQQDWRMNLHRPSIVIGTVDMGVSRGLARGYGTFRASYPIDFALIGNGTLMVVDEVQLAPQATATLRQFAAFQRELGTAEPSQLMIMSATVDERVLDTVDNPWEGADVLEIDESSESPELLRRMSAERTIREFPLGEKPKEFAAQIVERHQPGTLTLVVVNTVDAAVDAYREIGKLTPDEPRLLIHSQFRGVERKAQLEKLRGIARDGGIVVATQAIEAGVDIDARTLITEAAPWASVVQRAGRCNRAARYPVGEAVVHWRESAKGHPYDLEQVACAVEALRRAEGMSLTSAQLHRLGDDIPPEDLELRILRRCDFRQLFDTTPDLTGNDVDISCYIRPDKDLDVQLAWIPNGSIAQGKLTTEVPGQPLRCGVSMSRAKKLLNRKDIRERRDQRAWTFSIQDDRWIPARADQLRPQQLILVEAGLGGYSIEHGFDPAEKHTVQDHVDADDLRDATTPESVTSSQDAGARGNGWVTLHQHLADTREQAEALAKVLRPAGIDDAHLHAAAVAGVLHDLGKAHYDWARALLDANEDTPPDAPEQLYAKSPGTAPLRVRRELKVGEQKNARVERRSGFRHELISVFMLRTDAGRQLLIDLGVEPELHPLVLYLIAAHHGHIRITARDPRYDGVDGLSFLGCVDKEPINAVTLPGIELPESVVDLGIFRSGPDSWTTNALALLERLGPFRLAYLETLVRMADWRASANLELPVAEGTEE
>LR134406.1|VEH71334.1|2914576_2915452_-|Uncharacterised-protein
MSRAQNNPRRRGKQSLSGGSSALGVRERLLAAGVEIVSEVGLDTGLGRLNFEEAIKRARVARATAYRQWSTKEAFGNAVLVELAKGLYLTSDFVAEVPAIIADMVGDGSALATPQGRRNLIVDLTRTLVKGDFESILQSPSWHLHTALSAASPSLTDPELRTSATAALHVSDQRRIEARAQLYGQFTAFAGYRLRAPLAGPSGFRQMSEAAGAAFTGFLIRAQYDTTVTAETMRLRAFGMSEPRQWSPQTFASTNGIFSYIEPDPGITWDQERISDLLLTDFTSLFHAPQL
>LR134406.1|VEH71335.1|2915546_2915984_+|Rieske-[2Fe-2S]-domain
MYRDGEASPHACTRRTLIHTSLGLGAGATLAVVGLPGCSVERSGDGGPQRVQKSDVPVGGGALAGWYVVTQPTAGTFHAYYAACPHAGVKVNRIEGQEIICDSHGARFSTDNGAVLKGPTKKSLTPAPFTTDGDVLVISMPKETE
>LR134406.1|VEH71336.1|2915980_2916484_+|Uncharacterised-protein
MSTLIIVESYFGNTLQIAHAIADALPNAKLQSFDEAPDAIPDDIDLLLLGAPTHETALPSPKSRHSAATRNSAGSTNRVQPPPQRGLAEWAKHATIPAGTRTITFDTSAGRFATMFGCAAKAAAKQLRTRGFQVERGPSFTVTAGDVLATGQQEQAAQWAASLLSKN
>LR134406.1|VEH71337.1|2918189_2918732_+|Bacterial-regulatory-proteins,-tetR-family
MIAATRQLILDHGPEVTTRQVAEAAKVAEGTLFRVFPTRRDLIAATIADHLSPERLADIFAAAPTTTTVDETTEVCLSTAADYVTTFGRFIPRPHRGGDQDEIRFRIMELWEARVCDIAGWMRDRLAPHEAELTIPVKDFTHLVITLAMGYAHGRSPDTSLNPATLARLALDGARRKDSL

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Crispr_ID: LR134406_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134406_12

3043750-3043837

Orphan

Consensus_repeat	Method
CAGGCCGGCTCAACCAGCTTGGGGATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134406_12

>merge|LR134406|12|3043750-3043837|CRISPRCasFinder
CAGGCCGGCTCAACCAGCTTGGGGATGAGATGGTTTCGACACGACCCACTCGCAGAGCGAACAGGCCGGCTCAACCAGCTTCGGGATG

>LR134406|12|11|3043750-3043837|CRISPRCasFinder
CAGGCCGGCTCAACCAGCTTGGGGATG	AGATGGTTTCGACACGACCCACTCGCAGAGCGAA
CAGGCCGGCTCAACCAGCTTCGGGATG

Protein	Signature genes	Signature genes Name	Protein_function
LR134406.1\|VEH71429.1\|3038740_3039739_-\|FHA-domain	unknown	unknown	gnl\|CDD\|366133
LR134406.1\|VEH71427.1\|3036493_3036724_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71433.1\|3046331_3047324_-\|1,5-anhydro-D-fructose-reductase	unknown	unknown	gnl\|CDD\|223745
LR134406.1\|VEH71423.1\|3032682_3033792_+\|Dipeptide-transport-system-permease-protein-dppB	unknown	unknown	gnl\|CDD\|223674
LR134406.1\|VEH71438.1\|3052565_3053258_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71421.1\|3030298_3031480_-\|Fructokinase	unknown	unknown	gnl\|CDD\|224851
LR134406.1\|VEH71431.1\|3043888_3045004_+\|Cystathionine-beta-lyase-PatB	unknown	unknown	gnl\|CDD\|224090
LR134406.1\|VEH71440.1\|3054153_3055155_-\|Probable-ABC-transporter-permease-protein-HI_1471	unknown	unknown	gnl\|CDD\|163581
LR134406.1\|VEH71439.1\|3053380_3054157_-\|Hemin-import-ATP-binding-protein-HmuV	unknown	unknown	gnl\|CDD\|224045
LR134406.1\|VEH71436.1\|3050571_3051846_+\|Aspartokinase	unknown	unknown	gnl\|CDD\|235843
LR134406.1\|VEH71434.1\|3047486_3049589_+\|nitrate/nitrite-sensor-protein-NarQ	unknown	unknown	gnl\|CDD\|226951
LR134406.1\|VEH71425.1\|3034702_3035701_+\|Glutathione-import-ATP-binding-protein-GsiA	unknown	unknown	gnl\|CDD\|223521
LR134406.1\|VEH71437.1\|3052280_3052553_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71422.1\|3031563_3032676_+\|Uncharacterized-oxidoreductase-ycjS	unknown	unknown	gnl\|CDD\|223745
LR134406.1\|VEH71432.1\|3045248_3046199_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|227645
LR134406.1\|VEH71430.1\|3040216_3043342_-\|Isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
LR134406.1\|VEH71435.1\|3049585_3050245_+\|Response-regulator-uvrY	unknown	unknown	gnl\|CDD\|225107
LR134406.1\|VEH71424.1\|3033791_3034706_+\|Glutathione-transport-system-permease-protein-gsiD	unknown	unknown	gnl\|CDD\|224094
LR134406.1\|VEH71428.1\|3036720_3038520_+\|Glutathione-binding-protein-gsiB-precursor	unknown	unknown	gnl\|CDD\|173874
LR134406.1\|VEH71426.1\|3035693_3036497_+\|Glutathione-import-ATP-binding-protein-GsiA	unknown	unknown	gnl\|CDD\|224048

Protein	Function_ID	Function_description	E-value
LR134406.1\|VEH71429.1\|3038740_3039739_-\|FHA-domain	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	6.52923e-08
LR134406.1\|VEH71433.1\|3046331_3047324_-\|1,5-anhydro-D-fructose-reductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.19935e-59
LR134406.1\|VEH71423.1\|3032682_3033792_+\|Dipeptide-transport-system-permease-protein-dppB	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.03916e-95
LR134406.1\|VEH71421.1\|3030298_3031480_-\|Fructokinase	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	8.8678e-47
LR134406.1\|VEH71431.1\|3043888_3045004_+\|Cystathionine-beta-lyase-PatB	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	5.87749e-115
LR134406.1\|VEH71440.1\|3054153_3055155_-\|Probable-ABC-transporter-permease-protein-HI_1471	gnl\|CDD\|163581	TIGR03869, transport_system_permease_protein, proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.	2.79346e-89
LR134406.1\|VEH71439.1\|3053380_3054157_-\|Hemin-import-ATP-binding-protein-HmuV	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.75718e-102
LR134406.1\|VEH71436.1\|3050571_3051846_+\|Aspartokinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
LR134406.1\|VEH71434.1\|3047486_3049589_+\|nitrate/nitrite-sensor-protein-NarQ	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.82367e-13
LR134406.1\|VEH71425.1\|3034702_3035701_+\|Glutathione-import-ATP-binding-protein-GsiA	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.39518e-121
LR134406.1\|VEH71422.1\|3031563_3032676_+\|Uncharacterized-oxidoreductase-ycjS	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.12954e-65
LR134406.1\|VEH71428.1\|3036720_3038520_+\|Glutathione-binding-protein-gsiB-precursor	gnl\|CDD\|173874	cd08509, PBP2_TmCBP_oligosaccharides_like, The substrate binding domain of a cellulose-binding protein from Thermotoga maritima contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of a cellulose-binding protein from the hyperthermophilic bacterium Thermotoga maritima (TmCBP) and its closest related proteins. TmCBP binds a variety of lengths of beta-1,4-linked glucose oligomers, ranging from two sugar rings (cellobiose) to five (cellopentose). TmCBP is structurally homologous to domains I and III of the ATP-binding cassette (ABC)-type oligopeptide-binding proteins and thus belongs to the type 2 periplasmic binding fold protein (PBP2) superfamily. The type 2 periplasmic binding proteins are soluble ligand-binding components of ABC or tripartite ATP-independent transporters and chemotaxis systems. Members of the PBP2 superfamily function in uptake of a variety of metabolites in bacteria such as amino acids, carbohydrate, ions, and polyamines. Ligands are then transported across the cytoplasmic membrane energized by ATP hydrolysis or electrochemical ion gradient. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	5.43749e-68
LR134406.1\|VEH71430.1\|3040216_3043342_-\|Isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
LR134406.1\|VEH71435.1\|3049585_3050245_+\|Response-regulator-uvrY	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.87028e-25
LR134406.1\|VEH71424.1\|3033791_3034706_+\|Glutathione-transport-system-permease-protein-gsiD	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.15229e-54
LR134406.1\|VEH71432.1\|3045248_3046199_+\|Uncharacterised-protein	gnl\|CDD\|227645	COG5340, COG5340, Predicted transcriptional regulator [Transcription].	1.31266e-06
LR134406.1\|VEH71426.1\|3035693_3036497_+\|Glutathione-import-ATP-binding-protein-GsiA	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	1.51085e-93

>LR134406.1|VEH71430.1|3040216_3043342_-|Isoleucine--tRNA-ligase
MSSYNAVPATVDFPALEREIIALWTERDTFAKSLESTRDGKPWTFYEGPPTANGMPGTHHIEARVFKDLFPRFKTMQGRRVDRKAGWDCHGLPVELAVEKELGFSGKPDIEAYGVEPFNAKCRESVLRHVDAFAELTRRMGYWVNLDEAYVTMTPEYVQSCWWALKKIFDKGLLQEDYRVAPYCPRCGTTLSDHELAQGYEDVTDPSVYVRFPVTSGPLAGQADLLVWTTTPWTLVSNTSVAVHPDVDYVVGTHPEQGSLVVAEPLFDAVLGEEWTRGRSFKGSEMERWDYQRPFDLVEFPAPANYIVLADYVTTSDGTGLVHQAPAFGEDDMLVCRSYDLPFVNPIRANGTFDDAVKLVGGVFFKDADAPLVANLEERGLLFRKLDYLHSYPHCWRCHTALLYYAQPSWYIRTTRIKDQLLAQNEATTWYPESIKHGRYGDWLNNNIDWALSRSRYWGTPLPIWRNVDDPTDLVCVGSLAELGELAGRDLSTLDPHRPFIDDVEIVRDGATYRRVPEVIDAWFDSGSMPFAQWGYPHVPGSAEKLEANYPADFICEAIDQTRGWFYSLMAVGTLVFDESSYRNVVCLGHILAEDGRKMSKHFGNILEPIPLMEAHGADAVRWFMACSGSPWMARRVGDATIAETVRKVLLTYWNTVAFQSLYARASGWEPGASVPAVADRHVLDRWLVSATNELIRDVTAALDDFDTQKAGALLAGFVDDLSNWYVRRSRRRFWAGEAGALATLHETLDVVTRLMAPIMPFVTERVWQDLFAATDPTGPESVHLASWPVADESLIDADLMGAMATARRIVELGRAARAESRMKVRQVLKRMLVPTAALAELTAELVAEVRAELNVQDIASFTSAGDLVDHAAKGNFRALGKRFGKLTPKVAAAIAAADATRLARELRELGRSLIDLDGESLEVSADEVLLTERPRDGWSVVNEQGETVALDLELTPELVRAGRAREVIRVIQEARKSSGLDVSDRILLRLAAGAELLEAIREHADLIADEVLAVDLQQGDVEDPTAEEPELGLKVKITKA
>LR134406.1|VEH71429.1|3038740_3039739_-|FHA-domain
MSLPLGPWRLTYTPGQWLVLAGPRLVAIMQPAPPKMSVLVNQLWTDMQGAGSLAALLEVLRGYSLDQMPDFAAFVWDGGSLHGLARGRISVVDMATGQTALDGSGALTWHEAPLGTIRGLRVDMGVLEYDALLHLPLIAGAVGASALHLTTDPDQLVRLPDTEHQLPEPVVQQPQPVSDPLEPVAMPETQEMSAAHSEDSQFQRPGMDRGYVEEPQQYGPVGIGVQVNTGEFSNVVGGLVVGRAPDAARGPMGSSLMRVPSPGNDISRSHLLIEPAGPGEARITDLRSTNGTTIQLNGEEPYLLENGESVTVPIGTVLNLGDGVSLRVEQAR
>LR134406.1|VEH71428.1|3036720_3038520_+|Glutathione-binding-protein-gsiB-precursor
MTHTTARRGLGRCIVAAVSAVVATAMLLTGCSAAGRSPTGNNAATGRNFGADQSFDLPPKGNFHTLSGVTGSIPTNLGYLNDMIMLPGGIYNWEKQQYYYLLADESSALSPDGLTFNYKVREGLKWSDGSALTAKDVYNTFVMRYAMQQPVFNYIKDIELVDDSNVKFTLNSPAPIAVYWIMRERPASSAQYSAVVEDAAALFKKKAAPDSDEAKALSARIAEVKIDQPIVSGPFTINTSTMTNSQLTLTLNNNGYRADKVGYDTITVHSGSTETITPLVLSGDVHYATDGFPVATTKQFEQQGYTILRPPTYTGPALFFNYNKLPEFKDKRVRQAFAFFLNRNEMGTISLGDSGKGVRYMTGLSDNAIEKWVTPEAASKLTAYDLDEARATQLLQEAGWTKNGNQWVTSEGKPAQYDLVFPGDYVDWAATGQSLAEQASAFGIKITPIGVDSSQQEVDVQGGNFQLAIQAWGASNPFPTDSYNATLINFNYPMLGEGKGTGFGLQVETDVLGSMNLEQEVRDSAFGTPEEQVAKTTRLAQAFNELLPVLPLVERFGNNPVVTNKVAGFPEKSDYYMNSFYSDNFVPVFFYEGMLSPVQ
>LR134406.1|VEH71427.1|3036493_3036724_+|Uncharacterised-protein
MTTGGMPRQAIAAGLTITLLAGISMLRVPAGSAAWVMSVLSLAAGALLTGCGALLLLLARRSPDRTRKTPRPREES
>LR134406.1|VEH71426.1|3035693_3036497_+|Glutathione-import-ATP-binding-protein-GsiA
MTEKLMEIRDVTQRFRSAEREVVAVSRVSVQVDAGSVTCLVGESGSGKTTLARIAAGLDKPTAGSIHYQGQDISQLRGPGFMRFRREVQYVHQDPYASLNPTRTVLSTLLSALGARRNRTRRRATELLERVELTPADLFLERYPHQLSGGQRQRVALARALATEPALIIADETTSMLDASIRGSMINLLSELRDDLGVGFLFITHDFTLARHFAWRGRTAVLYLGELVEYGPTPEVMDAPKHAYTKALIDALPMIRFDDADVPDGAP
>LR134406.1|VEH71425.1|3034702_3035701_+|Glutathione-import-ATP-binding-protein-GsiA
MMTPTTGAKPLLEISGLEITYTTNRQPSTAVRDIDLTLYPRETLVLAGESGCGKTTLALAILGLLPKGGGIASGSISFETKKGTTVKLTSLSRDAERALRWTEMSVVFQGAMNSLNPLLTVRQHFVETARAHAGSPKGEKLEAWMAELLEMVMLEPKRVLASYPHQLSGGMRQRVLIALGLLLSPRLVVLDEPTTALDVLTQKAIITILRSLQERIGFSMIFITHDLALAAEIADRVAVMYDGRIVELGTAREVFTDPGHPYTRALLETIPRWDGEPGRLRTIKESLADYDITTDEGATQQLKLQKDSEVWLSETHRVAHIPRKRSEGRADD
>LR134406.1|VEH71424.1|3033791_3034706_+|Glutathione-transport-system-permease-protein-gsiD
MSNSPLPTTDPTVLTGARTPHPGKGRWRSALGASVTGTVGGVVFLLMCVASLILPWFIAVPAANSALIYAPPSAEHFLGTDADGRDVLTMILLGGRDVIIVSIISATVSTGIAVVLGALAAYLRGWVDSLVIQFTDFMLTIPQFALLVVLAVYVRLDSPVMLALLLGGLGWPGLLRAVRAQVLSLKEREYVEAARIVGLSTPVIIGREILPNMASYLMIHFIFAMTGATYAMVGLYLLGLAPMTGINWGIMINNAWAKGALFFTNAAWSIMAPLLVVSVLQLSAIWFARTLEQLLNPRLAGKQK
>LR134406.1|VEH71423.1|3032682_3033792_+|Dipeptide-transport-system-permease-protein-dppB
MSDDVHAEEAAQLSPELARESGGPPQASLGYRIRHNYVLGRILKSLITIWAVATLSFALVRWMPGNPLQAYVQKLMTQQGLGRQEALARASSLLSYDPDAPLLDQYLTYLGGLVQGNLGQSIVAPGTSVIDYILAYLPWTLFSVGLGLLLSFLIGIALGVLIAYKRGRWIDHLITNISSALNAVPNYMWAMLVIVVFGVQLRWFNVSSLRGTLTPGVQPGFTAEFILDALTHAALPITVYVLTSVGGWILQMKSSTTQVLEDDYVIGAKARGLPGSRIHISYVGRNAILPLFTQFAVQLGFVVGGSTLVEQIFKYDGVGYYFYDAIVARDYPVVQGFILIITVSVVLANLMADLLLSRIDPRIRVEGAR
>LR134406.1|VEH71422.1|3031563_3032676_+|Uncharacterized-oxidoreductase-ycjS
MTQQRPLRFGILGAGMIAGDEDGFLPNLTTLGDKVEITTVADVVPEHAQRIAQRFGIDTVYESLDEMLRDDRVEAVANLTPISVHAETSMRILRSGRHLLSEKPLATTLEEADALIEEAERQGVVFVCAPPDTLYAQYREARRLIDEDRIGQVCFARVRSSHGGPGGAPDGWPFDPTWFYQPGGGPLFDMGVYGIHEITSLLGPARRVSAFGGITEAVRTVRGTGPFGGLRIPVTTPDNFLLMLDFGNSTFAVIDATFNVLASKAPKVEVFGRRGAMAIYHRDENPLEVFVQDLEPGVDAWMAPEDLSRANNVREQELHRAMLMEHLVDCVRSGEPPIADAYKARHALEIMTAAIESAKSGRVVELATSF
>LR134406.1|VEH71421.1|3030298_3031480_-|Fructokinase
MPTASDRLMGKGPKLIREMNQRVLFDSLLSQGPSTRPELARASGLSQPTVIAALNELVDARLVVPLGNDARDTGRPAKLYQVNPAAASVIAVDIGRVWVRVAVVDIAGDELYRHDVRNVARSATALVELISAEVSQAKAKLLLDPGRTYAVIGSPGVFAPKRGVVDYADQLPGWHRPKLINMLNDELGAQLQIENDVNLAALAESIHGQARRHESFAYFHIGTGAGLATILNGKLHRGFHGAAGELAYLLTATGVDGRARVLEDVVSARALTASARELGLVNPTPKAVLQLAAAGDPTARQVMDRFVEGISAAVIAINAVLDPECVVLGGGIGIRLQDYVAEISGAVTRRSPFHVDLEVATLRTDATLRGAVDMGLETARNAMFRLGVPDDLG
>LR134406.1|VEH71431.1|3043888_3045004_+|Cystathionine-beta-lyase-PatB
MAIFDIPLETLRRRRSIKWARFAPDVLPMFVAEMDAKPVPAVVDVLSRMVAEGDTGYPELPDYQDAFASFASDVWGWDIDPATVSLACDVMTGMREMTLATTKPGDAVVINPPIYPPFRAVCNETRRRIVEVPTTEAGRLDLDALEVAFEKEHPAAYLLCSPHNPSGVVHTAEELARVMELANTHDVAVICDEIHAPLSGAEHTPLHRVPGGERAFVVTSASKSWNLAGLKAGLIVPGAEVADVVKGLSGYVPESASYLGVVAHATALNKGRDWLAEAAAEIRENKQHFADELHRAIPELTYTPSQGTYLAWLDCSPLGLDHAGQHFFEKAKVRFGQGTDYAPSATQFVRVNLATSKEIISEAVRRMAASL
>LR134406.1|VEH71432.1|3045248_3046199_+|Uncharacterised-protein
MASNGFMTRTTLWTHEHLTTLGVTDAQLKQHLRDGTMVRLRRGVYAPTQQADVFAEHRRRIQAAAIDVHDSSVFSHTSAAVLHGLPVPIESLREVTMTRRTPGHGDHSDLLRVRRTAIHDDEVTRIAGLPVTTLSRTVTDLARTSPFEWGLAVVDAALGRGLKRGFLQDELHRHPRLHGVRQARRVLALGDGRVESPAESLSRFHMMRAGIPAPELQFEIFDANGEFVARTDFGWPEHGLVGEVDGRIKYRELLGPGQSAADVVMAEKRREQRIRACGYWIVRWGWREANDQASLTALLNAGFASASPAWTARRSS
>LR134406.1|VEH71433.1|3046331_3047324_-|1,5-anhydro-D-fructose-reductase
MESIRWGIIGAGSIADTVAGDFAFVPQAELVAVASRDPERSRRLARKHGIPVIHRDYRALIESDGVDVVHIATTHPHHRDIALAAISAGKAVLVEKAFTVTLAGTEEVVAAATEAGVFAMEAMWTRFLPAVEAAREVVAWGRIGQVLGVQGDLCAFRPYDPTNRLWDPATGGGAVLDLGVYVVSMAQGLLGAARDVHCVGRYAPNGVESAATMNISYIGGGTAALTCGFDVHGPGRMTIFGTKGWVEIQPRFHHPTTISVHRSGVLPRIIEAKQIGRGYAHELMEVSDCLLAGQTQSATMPLADTVEVMRVLESCLKQLGRPQEEAKVEI
>LR134406.1|VEH71434.1|3047486_3049589_+|nitrate/nitrite-sensor-protein-NarQ
MGLGVGLAAILQGFTPFEDMFAPGLPGPTVFGLALIALAHLLAAIGAFLDLPLAWPVALVNTIGFWLTGAGMWFGGNPVMWHSNLWVWTILIYLLFRRRDGNAPWIFMTVGGLIPMIALMPRLDWRQQVLDISFTFVAIGIMALAYSTMKAQLQDLEDSVADDARRRSVEHRARLLESTRRENIRRVHDTLLHLFQQVASGRGEITREEVLRLGEESRAGLGTSDLDLEASPLLTALEQAVTDVGCPVALRIEDEASLPSKVTRNIAEATREAVRNVAKHVPGGTAQVTVRTSGSGCTVVISDWGPGFDPSEVPRSRMGIKEGIHGRMAEVGGHATIHSDIVGGTAVTLTWNPIPHAARIGPSGRRWLSLIALPSLLGTGLLLVLKDVGPNPLLAWALFAATAVVVTLTSRVLRRRGLHIHEAILANAWGIGLLIANYAWLSLASGNSRYDLWAIGLTNALMMLTIPGRRWKEAAGLVLANVAASVAGALGLFGPVPAGTDIGSYGAIIITGVVTLVLAIGASNIGKHAHRVQEEHTEEQLAEQLRKERVAEQEAWIAALDRICGPLFTGLYTGAVDPADPAVRVEARHVESRLRDALRLWPGGIHLATALDRLRRAGWGCLLDVEQVEAFEATRFASLLNQLDPAIPGQHLTITRRQGTLVATVAEPGLTETRQAGLAGARILLTDPDFTQFSCEEDQP
>LR134406.1|VEH71435.1|3049585_3050245_+|Response-regulator-uvrY
MSIKVAVLDDHEFICRAISALGRDYPELAVVYTSTCPEEFQAWCLENHPDVAMVDLMLHGQLAGHETIRVLSQAGISCLAFTADHRRVPISMAMRAGARGLALKDESPDKHFETLREIHETGWSPSSAMAAALIEDAAELPALSAHELRCLRLASEGVPIKAIGRQFNPVISLSTVKTYLARAYEKYAAVGRPVGNTTAAATQTWEDGWFDLDGTAESN
>LR134406.1|VEH71436.1|3050571_3051846_+|Aspartokinase
MGRIVQKYGGSSVADAESIKRVARRIARTRADGHEVIIVISAMGDATDELMDLALKVSPNPKSRELDMLLTTGERQSAALLAMALADLGVEAVSYTGSQAGILTTPTHGNARIIDITPGRVVRSLEEGSVVIVAGFQGVAQTTKDVTTLGRGASDTTAVALASALGADHCEIYTDVDGVYTADPRIVPSARRITEIGYEEMMELAASGAKILHLRCVEYARRENVKVHVRSSFSDKPGTWVKPHDEVRKAGKMEEAIITGVAHDRSEAKITVIGVPDQVGAAASIFEVISDAGINIDMIVQNVSRLSDVKTDISFTLPMSDGRKGIEALEANKNKIGFEEVLYDDQIGKVSIVGVGMRSHSGVTTTFFKALAAEGVNLQMISTSEIRISVVVSTDEVDRAVRGAHAAFGLDGEEEAVVYAGTGR
>LR134406.1|VEH71437.1|3052280_3052553_+|Uncharacterised-protein
MTARSVSFAFLCEGSSGEGTRNPKEILQKALLSASETSGRRLKKEKNSFNHHRRVLLQRLDPFGAVRDLPSWQCLERDIKRALEQLENQN
>LR134406.1|VEH71438.1|3052565_3053258_+|Uncharacterised-protein
MLSNFPTWSIRKPENTRPDAVCKVGGAPIGWPRDWPACALCNLPMSFLGQFTGDPLAPRLASGQTLFLFTCEHDSGCDFWDPVNGANACVLIPHDELGAHPTPIPEETPVLLELWVSSWTSRDDALPAKPGDSPQPTPEEDLFTKAGGTPYWTDNGPGYRIDPSDQMVLQIDTWVTVSDGQEALEAQAARFPDRAYTIKNRASIANLCSDGIAFVMTHEGEPEIYLMVNR
>LR134406.1|VEH71439.1|3053380_3054157_-|Hemin-import-ATP-binding-protein-HmuV
MKIEAENLSWAAGPAIIVDGIDVPAMPGRILGLLGPNGSGKSTLLGMLARTIQPRTGVVKLDDRPYSDWAPRDIARVLSVVQQKATTDQDVTVRDVIDLGRIPHRRRWAGPSPRDREVVEAAARRTGIEHLLNRDWHTLSGGEQQRAHLARAFAQEGQVMLLDEPTNHLDISHQLDILKTLRETGLGVVVALHDLNLATTFCDEVLVLHKGRAVCLGRPADVLTEDLIREVYGVEVRILHPDGDEAPLFQFLRPVTQT
>LR134406.1|VEH71440.1|3054153_3055155_-|Probable-ABC-transporter-permease-protein-HI_1471
MTPVLLIGLVLLVGSILYAITFGPSDLSIGEVWGVVANKLGLGPDPELSSLRTATVWQLRLPRVLLAAVAGAGLSLCGVIMQSLLRNPLAEPYLLGVSSGASTGAVLVLIAGLGGGVISFSAGAFVGSLGAFALTLLLSRLAGGTTDKIVLAGIAVTQGFSALTSFIIMIGADANVTRGILYWLMGSFANVSWEEVALTAAVLGCFLVLTIGMASSMDAFMFGEKEAVSLGVSVQRTRVVLLGCAALMTAVVVSSSGSIGFVGLVLPHISRMLVGSRHRGLLPVSALLGAIFLLWADTIARTLFAPLEVPVGVITALVGVPIFATILARTRKR

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Crispr_ID: LR134406_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134406_13

3292711-3292808

Orphan

Consensus_repeat	Method
GGTTGAGCCGACCCGCGAGCGCCAGCGAGCAGGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134406_13

>merge|LR134406|13|3292711-3292808|CRISPRCasFinder
GGTTGAGCCGACCCGCGAGCGCCAGCGAGCAGGTCGCATCGAAACCATCCCACCCCAAAGCTGGTTGAGCCGACCCGCGAGCGTCAGCGAGCAGGTCG

>LR134406|13|12|3292711-3292808|CRISPRCasFinder
GGTTGAGCCGACCCGCGAGCGCCAGCGAGCAGGTCG	CATCGAAACCATCCCACCCCAAAGCT
GGTTGAGCCGACCCGCGAGCGTCAGCGAGCAGGTCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134406.1\|VEH71664.1\|3301848_3303123_-\|UDP-N-acetylmuramoylalanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|377986
LR134406.1\|VEH71658.1\|3297037_3297559_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|366659
LR134406.1\|VEH71648.1\|3284766_3286314_+\|Na+-dependent-transporters-of-the-SNF-family	unknown	unknown	gnl\|CDD\|271366
LR134406.1\|VEH71646.1\|3281450_3282671_-\|putative-glycosyl-transferase	unknown	unknown	gnl\|CDD\|340825
LR134406.1\|VEH71650.1\|3286483_3288865_+\|Penicillin-binding-protein-1A/1B	unknown	unknown	gnl\|CDD\|273955
LR134406.1\|VEH71663.1\|3301135_3301852_-\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|225974
LR134406.1\|VEH71662.1\|3300294_3301056_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71652.1\|3289796_3290249_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71665.1\|3303263_3304292_-\|Transposase-and-inactivated-derivatives,-IS30-family	unknown	unknown	gnl\|CDD\|225382
LR134406.1\|VEH71656.1\|3292965_3296211_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71654.1\|3291031_3291460_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|225557
LR134406.1\|VEH71653.1\|3290331_3290919_+\|Protein-of-uncharacterised-function-(DUF567)	unknown	unknown	gnl\|CDD\|227231
LR134406.1\|VEH71657.1\|3296460_3296931_-\|Putative-peptidoglycan-binding-domain	unknown	unknown	gnl\|CDD\|366659
LR134406.1\|VEH71659.1\|3297629_3298118_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71660.1\|3298552_3299026_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71661.1\|3299151_3299646_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134406.1\|VEH71647.1\|3282672_3284529_-\|UDP-glucose-4-epimerase	unknown	unknown	gnl\|CDD\|224011
LR134406.1\|VEH71645.1\|3280742_3281363_-\|Imidazole-glycerol-phosphate-synthase-subunit-HisH-1	unknown	unknown	gnl\|CDD\|153219
LR134406.1\|VEH71649.1\|3286310_3286445_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|293556
LR134406.1\|VEH71651.1\|3288861_3289761_+\|phosphodiesterase-YaeI	unknown	unknown	gnl\|CDD\|224326

Protein	Function_ID	Function_description	E-value
LR134406.1\|VEH71664.1\|3301848_3303123_-\|UDP-N-acetylmuramoylalanine--D-glutamate-ligase	gnl\|CDD\|377986	pfam08353, DUF1727, Domain of unknown function (DUF1727). This domain of unknown function is found at the C-terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.	1.27227e-35
LR134406.1\|VEH71658.1\|3297037_3297559_-\|Uncharacterised-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	0.00659375
LR134406.1\|VEH71648.1\|3284766_3286314_+\|Na+-dependent-transporters-of-the-SNF-family	gnl\|CDD\|271366	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.	0
LR134406.1\|VEH71646.1\|3281450_3282671_-\|putative-glycosyl-transferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.2353e-62
LR134406.1\|VEH71650.1\|3286483_3288865_+\|Penicillin-binding-protein-1A/1B	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	8.2483e-146
LR134406.1\|VEH71663.1\|3301135_3301852_-\|cobyric-acid-synthase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	7.49895e-73
LR134406.1\|VEH71665.1\|3303263_3304292_-\|Transposase-and-inactivated-derivatives,-IS30-family	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	6.659e-97
LR134406.1\|VEH71649.1\|3286310_3286445_+\|Uncharacterised-protein	gnl\|CDD\|293556	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit. MaAIMP_sms is a family of hypothetical proteins from Proteobacteria that purported to be small subunits of a methionine and alanine importer.	4.03336e-06
LR134406.1\|VEH71654.1\|3291031_3291460_+\|Uncharacterised-protein	gnl\|CDD\|225557	COG3012, COG3012, Uncharacterized protein conserved in bacteria [Function unknown].	2.73793e-40
LR134406.1\|VEH71653.1\|3290331_3290919_+\|Protein-of-uncharacterised-function-(DUF567)	gnl\|CDD\|227231	COG4894, COG4894, Uncharacterized conserved protein [Function unknown].	5.01565e-17
LR134406.1\|VEH71657.1\|3296460_3296931_-\|Putative-peptidoglycan-binding-domain	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	0.000180713
LR134406.1\|VEH71647.1\|3282672_3284529_-\|UDP-glucose-4-epimerase	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	6.63784e-180
LR134406.1\|VEH71645.1\|3280742_3281363_-\|Imidazole-glycerol-phosphate-synthase-subunit-HisH-1	gnl\|CDD\|153219	cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.	4.30044e-85
LR134406.1\|VEH71651.1\|3288861_3289761_+\|phosphodiesterase-YaeI	gnl\|CDD\|224326	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only].	2.2011e-47

>LR134406.1|VEH71654.1|3291031_3291460_+|Uncharacterised-protein
MSAPPDICPCDTGRPYETCCGPLHEGRRPAATAVALMRSRYSAYALGLRDYLLETWHPNTRPESIDPEPGLRWTGLTIEHSGAGKAWDEEGMVAFSATWEEGDQTGTMREVSSFLRVDGRWFYVNGIPHAAGHHTPEEHEKT
>LR134406.1|VEH71653.1|3290331_3290919_+|Protein-of-uncharacterised-function-(DUF567)
MSRQAGLLNQDLLILQQFRSGFSPEFDILDDQGRVVGMVAGTEGGARRFFLGPREFDVLDADGSRLAHLSDVRDFWRDTYEIVRGDGSMLATVARKVAFFSRRFSIALSTGEEFMVEGNFFDREFNVVNANGGGAVAQVSRERAGFAKAFLGHDRYALYYPPGTSPDRRLAILGSMISLDLMRAKDARSAANNGA
>LR134406.1|VEH71652.1|3289796_3290249_-|Uncharacterised-protein
MNPLSAEDFIAWADRLARLPWPLTLDAFRGTAIGFGWSPTDRPWEFVVDFTSGPRRMVLFGGRSGGIHNMSFPLIKPPGESAEDAAQLNELFVSYETTGTQAWGKPFYTDPSEDPTVAWRLPNHTVAEIVGGPDMILSTFFTPQGSFIYG
>LR134406.1|VEH71651.1|3288861_3289761_+|phosphodiesterase-YaeI
MTTPFRVAKGLATVAAGCFAWGLVEATRFRVRHVTVPVLPPGGSELRILHLSDIHLLPGQQLKLNFLRSLAELEPDLVINTGDNIASDTATWPLMSALGRLQEVPGGFVFGSNDYHKPEFKNPLCYVIQGRSELSGTPERLATEQLRAALTRSGAWRDLNDRRAIVEAGGYRIELRGTDDAHHDLDHYPAVVGPPSDGVDLSLGVTHAPYRRILDAMTADGVELILAGHTHGGQVCVPGHGALTTNCDLPTDRVKGLSEHRLEGHHAWLHVSAGIGTSPFAPYRFACPPEVTVLTLVAR
>LR134406.1|VEH71650.1|3286483_3288865_+|Penicillin-binding-protein-1A/1B
MKTRAPRSKGKSVAMFLAVSVLCGLLLSGLAVPFVALASGFTKAASDNMQYLPAEFETPPQSEKSKILMADGSELATFFEENRTYVALEQISPLMQKAQIAIEDHRFYEHGAIDIQGLGRAVIRTLSGSTQGASTLTQQYVKQVQIEAAKDRGDEEGVQAAQAVSIDRKIREMRYAMAVEERFSKNEILERYLNIAYYGDGAYGVEAAAHHYWNTTAKDLTLAQAAMLAGIVQNPVAFNPVKNPEKAIERRNQVLKRMASSEVGAITKEEADAAMQEGFDKSNLQTTPNGCTASQFPILCDYVVRTLTSDQMPSLGSTAEERTNRLKRGGLTIKTLIDPEAQQAAEAAVSQTVGAKDPVWGGSVLIQPSTGLITAMAQSRTKLGSGEGETWQNVNVSTQYGGIEGFQPGSTFKPFVIGAALEQGVPTSTTFDAPQTMQFKGQKFKNCEGTFTFQGSWEPKNYDKAYGVIDMLKAAQNSVNTYFIQLEAKVGICASIDMAQKLGVKLADGTDMRSMANYPSWVLGTAYVTPLSMAEAYATFANRGVHCNPIILQSVQAKDGTEIEIPSADCKKVIEPEVADGVNHVLSTVMTQGTGTRARMSDGRPQAGKTGTTDDAMSVWFAGYTPDMAGVSYIAVDNINPYYQNHRKSIDGMRLSTGTVLEGSGGKDAGGIWRAAMSAALKNVPHTSFEAPNQRVLEGEKVPIPSVAGMSYEQAKQTLEDAGFTTAKMEVFSPQPAGTYLGKISPSGSAAKFSTIRMQFSKGPQPTTAPTVGAPPVPSPGQPMPTTVPTGER
>LR134406.1|VEH71649.1|3286310_3286445_+|Uncharacterised-protein
MSAAAIVMMIVAILTLWGGLAAATVSLFRRPDLSALDDEVPQEA
>LR134406.1|VEH71648.1|3284766_3286314_+|Na+-dependent-transporters-of-the-SNF-family
MEKRAPRQESFNSRNYFILAAIGSAVGLGNIWRFPYVAFKNGGGAFILPYLIALLAVGIPLLFFDYALGHRYRGSAPLSLRRMGRWTESLGWWQVMVCFVIGIYYAAIIGWAGMYTLFSINQAWGSDPKTFLMRDFLHVADTPGVGLDFVPSLFIPILVVWAVTLITVALGVNKGLAMVNKIFMPLLVVMFLVLVVQSLFLPGAGTGLDALFTPKWGALGDPAVWAAAFGQIFYSLSVGFGIMLTYSSYLKRRTDLTGSGLVVGFANSGFELLAGIGVFAALGFMANQAGLGVSDVAGQGLTLAFVAFPTIISQAPLGSLMGVLFFASLTVAGLTSLLSIVEVVVSAVRDKLGIPKVQATLVIGIPMTILSIFLLSTTTGLYFLDITDEFVNKYGILGGALACIIATVWFVRKLPVLRDHLNRFSSFKVGRGWMALVGVASPLVLGYMLINDFIGKLGKPYENYPQHLLVIFGWGMSAALIIIAVVLTLLPWRRSIRTDFDEQNNEHEVSEEVSA
>LR134406.1|VEH71647.1|3282672_3284529_-|UDP-glucose-4-epimerase
MRTMTTRTGLLRAGLALWDGASWSVAAMALVFARYTLTLARPETQFVIQYVVAAVILQIAIGLITKLYRGRHGIASFEESALLALITLGIGLVLGIFSVFFATPGYPRVVTFTVPLAALVLMAAGRFLFRTVSRSTQHHEGGEPVLVYGAGNAGQQLGRLLAYDPDAPYEVVGYIDDDPAKSNLHVQGAKVLGKRGDMVSIARAHGINKIIVAIPTADRTFMREISELADEAGLETLVMPSTKDLVSGRVGLGDLHQLNVTDLLGRAQIKTNLGEIADYLSGKVVLVTGAGGSIGSELARQLHRFGPKELVMLDRDESGLHGTQLSIYNQGLLDTPNMVLCDIRDVEALDKVFADHRPDVVFHAAALKHLPMLEQYPLEGWKTNTIGTLNVLRASEKYGVQRLVNISTDKAADATSVLGKTKRLAEELTAFYAGKTGRTWLSVRFGNVLGSRGSMLHTFTRQIEQGGPVTVTHPEITRYFMTIPEACELTIQAGAIGRPADVLVLDMGEPVRILDVAKDLIKRSGKDIRIIFTGLRPNEKMHEVLFSDDEDRTPTTHEMISRVNVPALDPELLETVDGSDPESLSRLTHQRNAKEAARMAEEQAHSGLDGINLERPRS
>LR134406.1|VEH71646.1|3281450_3282671_-|putative-glycosyl-transferase
MRILYIDHYAGSPTLGMEYRPHAMATEWAGMGAETVLLAGTHSHLRKKNFPDAKPLEPVEIDGVEFRFIRNRAYDGNGIGRVLSMADFVGRGWLAARRIAREVRPDAVIASSTYPFDTYLAQRVAKASGALLVHEIHDLWPLTPIELGGHSPKHPLMWAMAQAEKSAYRNSDAVVSILPNAEPHVRSLGIVTPVIPIPNGIESDAPHEPAPEAFASQVEDLHERGRAVIGYAGGMTNANAMDDFVSAMALIRDEPVTALLLGDGLYRTDLEKQARDSGAHVIFAGSIPKSQVHEALKLCDALYIGSKTSPLYTFGVSANKIFDYMATGVPIINAFASEHSPMVYAGSTIRARGEDPADIARAIREAVSLPAEERARLGELSVAWVREHHAMPVLARQFLDVLGGRF
>LR134406.1|VEH71645.1|3280742_3281363_-|Imidazole-glycerol-phosphate-synthase-subunit-HisH-1
MTQAAAIGVVNHGVGNLGSVMNMLRYINAVPVLVSTPEEVAAQHHLILPGVGSYDAGIAGLRESGMADAVLDHAAAGKPLLGICLGMQMLLEGSSEGELPGLGLIPGHCEAFADHVTNRRIPHMGWRDVHSVENGGFALPDPGRFYFAHSYFAPLDEGGITWARATYGVGFSAVVGRDSVVGMQFHPEKSHRFGMAVLTEFAGWRA
>LR134406.1|VEH71656.1|3292965_3296211_-|Uncharacterised-protein
MLVRTHADDPRLPVLLNALAGKSSYHALLAVEAARALGDEDRLRELAKHPSRRVRFRAAACLPLRVKDPQVFAADYAARPIGERRRLRRRIIDEGHHELAAALLAAPLPDRERAGLLIACDSEAVADHMPELGDLVPNLAALANRHPDALLAELRRRLEGAPADRRSAIWWWVAPAARHLARHRPRELALLLAGSEASQGLPPLFRGVAGTLLAAAPEEMARLLAATPDDWAQDGDALRNQVRRHFRELNREQRALILRAERDDDRRVAALLRGLPPGERALAFSDAYEGVELRDREWSEELLDALPRELRETEAARMAALPANQGRGDQLRLAACLALGDAITVAEPCLNSSDADERGAAWRAILASALRSRDPREVVVAFARIEALAGEQDPVRNAATSALAVASGRTLDLIPIERLKKLAGILTDARDTSSATFMNLQGALWRLLVHRAQQGEPVQEQVELLTRLPGSCAAPAVLAAGRVLGVGGKLLLPIPAAAAKTLAAGFSQTLRSEADRGEYDQVNCLAVLLGRDRHDLPEITGILRRAIRSHDPRTIDRAILVWLAPVRTRGERLAGLLKLDPSFATLGHVQADICRHRPDLATILYRKIPISGRLHDETPYIGVAPGPFDGWLPEQSRPYSQALARFVDDETQDRWQRLAAVEVLGRLPWLAPDALEPDSTETVIREAQLTAAFRSPAVEWSLTDFLTVLDTDLASAAMLAATRVVDELPPAETTKALMVVATDQWRKVNVRKQAVRQVARLHRPEAAEMLVDLAMDITVHRDVRLAATAGLIELLDDEWAWEALSEAAAGGREAARVLAGIDPGRMSARHRARFGEILAKTSPEPELVEALPKWVFWTPKITGRIVELLSSEEIPVRQAAVRALSGAGSGLRWGMLLVAVAGIAAAAADEPDDSMEELPNQRLLEDVVAALLPDSPRVRMERRARLKELAAALAAFPHTAWQHWQVLLAATDWNDPLTDLTELAEVVADPLRAREILELTRQTLKELHEARLCGDFAVATEELLARGDAVTGAIALALLGHAGDEVGWDDAWRARLRTARSHPVPAVAAWAREIHVGSWTT
>LR134406.1|VEH71657.1|3296460_3296931_-|Putative-peptidoglycan-binding-domain
MTIEKPGFSRRRLLTTAAVGVPAVGLLGAVNLFNAPAAKAAPLATDGYWGFETTRVLQQLYRLNVDGWVLSQPASWAASNPGLAGGWEWVSDDGARGSSVISNLQRMLRVTADGLIGPTTIKAMQGRYGVTQDGVLDEGSLTIMRLQAELNAVNGY
>LR134406.1|VEH71658.1|3297037_3297559_-|Uncharacterised-protein
MTVEKSGFSRRRLLTTAAVGVPAVGLLGAVNLFGASAAKAQTVAVDGWWGEATTSGLWKFLRYVVFPHNSLKPNTHIVYQPASQAAANPGLGSGWDWVSDDEAEYNGGSPIIRMMQWWLGMGVSYGNDYDDGMIGPYTISALQNHYGLTADGVLDGPSPTISALQTEINKYVG
>LR134406.1|VEH71659.1|3297629_3298118_-|Uncharacterised-protein
MTIENPGISRRRLLTVAAVGVPAMGALSAVNLFGAPAAKAARLRIDGVWGTGTSLALEEFLGRVVFPGARLNEGGWIRSQAASWAAVNPGLGAGWEWVPDKQANGSATIALMQRWLGAGRDGLIGPSTIRALQAHYGKVTDGVLDDGSPTIAALQDELNRYL
>LR134406.1|VEH71660.1|3298552_3299026_-|Uncharacterised-protein
MTIERPGFSRRKLLSTAAVGVPAMGALSAVNLFGAPAAKANPYVPIDGLWGSGTTAGLQEVLGTPVDGVVSGQNEEWAGPNTALTSGWEWVPASDATGSTVISAMQSRIGVAADGLIGPETIRALAHYLKWSDDSGVLVEPSQVVGSLQGRVQDGWF
>LR134406.1|VEH71661.1|3299151_3299646_-|Uncharacterised-protein
MTMEKPGMSRRHLLRTAAVGVPAMGALSAVNLFGAPAAKAIDLEVDGYWGSATTSALQEVLGTPVDGIVSSQNESWRKYNPALTSGWEWVPGEMATGSTVIAALQSRIGANSDGLLGQSTIRLLQRWVGAPVSGFFDNPRRDRRGNEPSNGVYELQLRLQKGTI
>LR134406.1|VEH71662.1|3300294_3301056_+|Uncharacterised-protein
MDESKWETPLYVTLEEPITVGVLCRCLTNLLLGALLGFALILFSAAPGGSPSGGPAQTPPASILLGLVVPVVIGFLSHGNAAALFSAGTGTLLLVLPLSMAAPLKSMLPWMGGATFIAAGAALLLRHSSPSDDAPRPMGHLKSVAAGIFAGLLACLFLSFRVTPTAALEAGFIPCLAVVAMTLLSFGMVSNGTFLGPIALVIACTAMAVYTNIGKDSFLTAMVFGVIALSAAIPSMTEESREPRILKVPALPD
>LR134406.1|VEH71663.1|3301135_3301852_-|cobyric-acid-synthase
MIRIVQLYPRDMNLYGDWGNARVLQKRLEWRGIDAEIVDHNPGDDTDLGSGDIFLGGGGQDAGQDKIQEDLQHHIDELGRLVEDGAPMLLICGMYQLLGRTFVTGEGKTIKGAGILPLDTRAGTDRLIGNITLETPEFGEVVGYENHSGRTYVDDGHEPLGKVLRGAGNNGEDQQEGLRYRNVIGTYLHGPILPANPKVADFLITKALERRGMPTDLASLPVDEVAAKAHRTAKNRPR
>LR134406.1|VEH71664.1|3301848_3303123_-|UDP-N-acetylmuramoylalanine--D-glutamate-ligase
MPRHTISTMIGKLVKQVARLRGSGSALPGLVVERMDRGYLRRTLEPLPGGVVLVSGTNGKTTTTKVVTELLQAVGYKVFTNRTGSNFSRGVISELLPLVNWRGRLDADIAVLELDEAWAVHFVRQVKPRMSLFLNVMRDQLDRFGEIDTAAEMLAKNAEAATEAVILNRDDPRVYRIRERAKAEAVYFGTTDELLALMPTDDTLKGGQAHANHEARADVLLKAIDGRRATYEIDGTDHVVEMSLNGVYNLINAAAALTLVRRIVGDAVPTQKLLEALGNVRPAFGRGETITYKGVPMELVLVKNPSGFRLSLLSFADGKADNMIAINDNYADGRDISWLWDVDFTPLDSVALVTGTRADGMALRLAYDDVPVGEIEADLQHALDRFAALNPGKPKRIYTTYTAMTALRKLMSGLALGQDQEAVA
>LR134406.1|VEH71665.1|3303263_3304292_-|Transposase-and-inactivated-derivatives,-IS30-family
MLEVGEPAQWRDGQGRLTLAGRILIEVRVGDRVPPSQIAAELGVHRSTVSREMKRCPGRYRAQPAQRLADWSRRRPKDRKLVLGTPLWDEVVTRLNNKHSPQQIAHRLRQDFPEDPTMWVSHETIYQALYVQAAGGLRHELTVEKALRSGRTTRGPRSRLSGRGSRSWIGEATITNRPAEVEDRAVPGHWEGDLIIGKGGTSALVTLNERTTRYTMIQRVTSRDSTTVTDALIQMARRLPATLMTTLTWDQGIEMAQHARFTFASGCQAYFCDPHSPWQRPTNENSNGLIRDFFPKGTDFTHITDTQVQHAEDLLNTRPRRVLDWATPAEKMEQLLNVAHTT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134406_7	7.1\|699387\|35\|LR134406\|CRISPRCasFinder	699387-699421	35	LR134406.1	707402-707436	0	1.0

1. spacer 7.1|699387|35|LR134406|CRISPRCasFinder matches to position: 707402-707436, mismatch: 0, identity: 1.0

tcgagaccgccatcaaggtggcccgcaagtggggg	CRISPR spacer
tcgagaccgccatcaaggtggcccgcaagtggggg	Protospacer
***********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134406_2	2.2\|379005\|27\|LR134406\|PILER-CR	379005-379031	27	NC_005241	Cupriavidus necator H16 megaplasmid pHG1, complete sequence	224478-224504	4	0.852
LR134406_2	2.2\|379005\|27\|LR134406\|PILER-CR	379005-379031	27	NZ_CP039289	Cupriavidus necator H16 plasmid pHG1, complete sequence	224477-224503	4	0.852
LR134406_2	2.2\|379005\|27\|LR134406\|PILER-CR	379005-379031	27	NZ_CP021119	Streptomyces sp. CLI2509 strain CLI2905 plasmid unnamed1, complete sequence	45645-45671	5	0.815
LR134406_2	2.1\|378935\|28\|LR134406\|PILER-CR	378935-378962	28	NC_011984	Agrobacterium vitis S4 plasmid pAtS4c, complete sequence	58570-58597	6	0.786
LR134406_2	2.2\|379005\|27\|LR134406\|PILER-CR	379005-379031	27	NZ_CP041606	Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence	71435-71461	6	0.778
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	KY555147	Caulobacter phage Ccr34, complete genome	24813-24848	8	0.778
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	KY555145	Caulobacter phage Ccr29, complete genome	27460-27495	8	0.778
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	KY555143	Caulobacter phage Ccr2, complete genome	25293-25328	8	0.778
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	NC_019410	Caulobacter phage CcrKarma, complete genome	24912-24947	8	0.778
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	KY555146	Caulobacter phage Ccr32, complete genome	24814-24849	8	0.778
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	NC_019407	Caulobacter phage CcrMagneto, complete genome	24088-24123	8	0.778
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	KY555144	Caulobacter phage Ccr5, complete genome	24685-24720	8	0.778
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	JX163858	Caulobacter phage phiCbK, complete genome	183008-183043	8	0.778
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	KY555142	Caulobacter phage Ccr10, complete genome	24818-24853	8	0.778
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	NC_019411	Caulobacter phage CcrSwift, complete genome	24049-24084	8	0.778
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	962934-962969	8	0.778
LR134406_11	11.65\|2903954\|38\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2903954-2903991	38	NZ_CP013125	Pseudomonas mendocina S5.2 plasmid pPME5, complete sequence	108925-108962	8	0.789
LR134406_9	9.1\|2649377\|31\|LR134406\|CRISPRCasFinder	2649377-2649407	31	AP014367	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C79, * SEQUENCING IN PROGRESS *	12674-12704	9	0.71
LR134406_11	11.11\|2900009\|37\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900009-2900045	37	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	1084979-1085015	9	0.757
LR134406_11	11.19\|2900594\|34\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900594-2900627	34	NZ_CP028969	Aminobacter sp. MSH1 plasmid pUSP1, complete sequence	125287-125320	9	0.735
LR134406_11	11.19\|2900594\|34\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900594-2900627	34	NZ_CP026266	Aminobacter sp. MSH1 plasmid pAM01, complete sequence	122581-122614	9	0.735
LR134406_5	5.1\|467324\|34\|LR134406\|CRISPRCasFinder	467324-467357	34	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	572964-572997	10	0.706
LR134406_5	5.1\|467324\|34\|LR134406\|CRISPRCasFinder	467324-467357	34	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	573007-573040	10	0.706
LR134406_5	5.1\|467324\|34\|LR134406\|CRISPRCasFinder	467324-467357	34	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	573007-573040	10	0.706
LR134406_5	5.1\|467324\|34\|LR134406\|CRISPRCasFinder	467324-467357	34	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	572998-573031	10	0.706
LR134406_6	6.18\|659898\|38\|LR134406\|PILER-CR	659898-659935	38	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	239527-239564	10	0.737
LR134406_6	6.30\|658667\|37\|LR134406\|CRISPRCasFinder,CRT	658667-658703	37	NZ_CP018235	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed7, complete sequence	96065-96101	10	0.73
LR134406_6	6.30\|658667\|37\|LR134406\|CRISPRCasFinder,CRT	658667-658703	37	NZ_CP016290	Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence	268793-268829	10	0.73
LR134406_6	6.47\|659899\|37\|LR134406\|CRISPRCasFinder,CRT	659899-659935	37	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	239527-239563	10	0.73
LR134406_10	10.2\|2897343\|37\|LR134406\|CRISPRCasFinder,CRT	2897343-2897379	37	MH590601	Streptomyces phage Haizum, complete genome	32371-32407	10	0.73
LR134406_10	10.2\|2897343\|37\|LR134406\|CRISPRCasFinder,CRT	2897343-2897379	37	MF766046	Streptomyces phage Diane, complete genome	32256-32292	10	0.73
LR134406_10	10.2\|2897343\|37\|LR134406\|CRISPRCasFinder,CRT	2897343-2897379	37	MF766048	Streptomyces phage Tefunt, complete genome	32373-32409	10	0.73
LR134406_10	10.2\|2897343\|37\|LR134406\|CRISPRCasFinder,CRT	2897343-2897379	37	MF766044	Streptomyces phage Amethyst, complete genome	32027-32063	10	0.73
LR134406_10	10.2\|2897343\|37\|LR134406\|CRISPRCasFinder,CRT	2897343-2897379	37	JX182370	Streptomyces phage R4, complete genome	32889-32925	10	0.73
LR134406_10	10.2\|2897343\|37\|LR134406\|CRISPRCasFinder,CRT	2897343-2897379	37	MK392364	Streptomyces phage Nishikigoi, complete genome	32371-32407	10	0.73
LR134406_10	10.13\|2897345\|37\|LR134406\|PILER-CR	2897345-2897381	37	MH590601	Streptomyces phage Haizum, complete genome	32371-32407	10	0.73
LR134406_10	10.13\|2897345\|37\|LR134406\|PILER-CR	2897345-2897381	37	MF766046	Streptomyces phage Diane, complete genome	32256-32292	10	0.73
LR134406_10	10.13\|2897345\|37\|LR134406\|PILER-CR	2897345-2897381	37	MF766048	Streptomyces phage Tefunt, complete genome	32373-32409	10	0.73
LR134406_10	10.13\|2897345\|37\|LR134406\|PILER-CR	2897345-2897381	37	MF766044	Streptomyces phage Amethyst, complete genome	32027-32063	10	0.73
LR134406_10	10.13\|2897345\|37\|LR134406\|PILER-CR	2897345-2897381	37	JX182370	Streptomyces phage R4, complete genome	32889-32925	10	0.73
LR134406_10	10.13\|2897345\|37\|LR134406\|PILER-CR	2897345-2897381	37	MK392364	Streptomyces phage Nishikigoi, complete genome	32371-32407	10	0.73
LR134406_11	11.19\|2900594\|34\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900594-2900627	34	NC_011811	Erwinia phage phiEa21-4, complete genome	16427-16460	10	0.706
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	405664-405699	10	0.722
LR134406_11	11.3\|2899424\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2899424-2899459	36	NZ_CP047145	Streptomyces sp. HF10 plasmid plas1, complete sequence	64875-64910	11	0.694
LR134406_11	11.21\|2900736\|36\|LR134406\|PILER-CR,CRISPRCasFinder,CRT	2900736-2900771	36	KM083128	Mycobacterium phage Sparky, complete genome	1162-1197	12	0.667

1. spacer 2.2|379005|27|LR134406|PILER-CR matches to NC_005241 (Cupriavidus necator H16 megaplasmid pHG1, complete sequence) position: , mismatch: 4, identity: 0.852

tgaccgcctgcatgaggcgggcccatc	CRISPR spacer
taaccgcatggatgaggcgggcccagc	Protospacer
*.***** ** ************** *

2. spacer 2.2|379005|27|LR134406|PILER-CR matches to NZ_CP039289 (Cupriavidus necator H16 plasmid pHG1, complete sequence) position: , mismatch: 4, identity: 0.852

tgaccgcctgcatgaggcgggcccatc	CRISPR spacer
taaccgcatggatgaggcgggcccagc	Protospacer
*.***** ** ************** *

3. spacer 2.2|379005|27|LR134406|PILER-CR matches to NZ_CP021119 (Streptomyces sp. CLI2509 strain CLI2905 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

tgaccgcctgcatgaggcgggcccatc	CRISPR spacer
tcgccgcccgcatgaggcgggcccggc	Protospacer
* .*****.***************. *

4. spacer 2.1|378935|28|LR134406|PILER-CR matches to NC_011984 (Agrobacterium vitis S4 plasmid pAtS4c, complete sequence) position: , mismatch: 6, identity: 0.786

gatccagtagattgacagctcgcttgtg	CRISPR spacer
gttccagtagtttgacagctcgcgagat	Protospacer
* ******** ************  *

5. spacer 2.2|379005|27|LR134406|PILER-CR matches to NZ_CP041606 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence) position: , mismatch: 6, identity: 0.778

tgaccgcctgcatgaggcgggcccatc	CRISPR spacer
tgaccgcctgcatgaggccgtccacgg	Protospacer
****************** * **

6. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to KY555147 (Caulobacter phage Ccr34, complete genome) position: , mismatch: 8, identity: 0.778

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
gcagcgggttgccgacctcctcgccgccggcgaggt	Protospacer
 *  *. ***********.************* **

7. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to KY555145 (Caulobacter phage Ccr29, complete genome) position: , mismatch: 8, identity: 0.778

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
gcagcgggttgccgacctcctcgccgccggcgaggt	Protospacer
 *  *. ***********.************* **

8. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to KY555143 (Caulobacter phage Ccr2, complete genome) position: , mismatch: 8, identity: 0.778

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
gcagcgggttgccgacctcctcgccgccggcgaggt	Protospacer
 *  *. ***********.************* **

9. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to NC_019410 (Caulobacter phage CcrKarma, complete genome) position: , mismatch: 8, identity: 0.778

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
gcagcgggttgccgacctcctcgccgccggcgaggt	Protospacer
 *  *. ***********.************* **

10. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to KY555146 (Caulobacter phage Ccr32, complete genome) position: , mismatch: 8, identity: 0.778

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
gcagcgggttgccgacctcctcgccgccggcgaggt	Protospacer
 *  *. ***********.************* **

11. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to NC_019407 (Caulobacter phage CcrMagneto, complete genome) position: , mismatch: 8, identity: 0.778

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
gcagcgggttgccgacctcctcgccgccggcgaggt	Protospacer
 *  *. ***********.************* **

12. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to KY555144 (Caulobacter phage Ccr5, complete genome) position: , mismatch: 8, identity: 0.778

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
gcagcgggttgccgacctcctcgccgccggcgaggt	Protospacer
 *  *. ***********.************* **

13. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to JX163858 (Caulobacter phage phiCbK, complete genome) position: , mismatch: 8, identity: 0.778

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
gcagcgggttgccgacctcctcgccgccggcgaggt	Protospacer
 *  *. ***********.************* **

14. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to KY555142 (Caulobacter phage Ccr10, complete genome) position: , mismatch: 8, identity: 0.778

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
gcagcgggttgccgacctcctcgccgccggcgaggt	Protospacer
 *  *. ***********.************* **

15. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to NC_019411 (Caulobacter phage CcrSwift, complete genome) position: , mismatch: 8, identity: 0.778

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
gcagcgggttgccgacctcctcgccgccggcgaggt	Protospacer
 *  *. ***********.************* **

16. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.778

cccccatgttgccgaccttctcgccgccggcgcggg-	CRISPR spacer
cagccatgtcgctgaccttctcgccgcc-gcgcattc	Protospacer
*  ******.**.*************** ****.

17. spacer 11.65|2903954|38|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013125 (Pseudomonas mendocina S5.2 plasmid pPME5, complete sequence) position: , mismatch: 8, identity: 0.789

cctcaccagcgacgccatcggcttcggcgaccttgacc	CRISPR spacer
ggccatcttcgacggcatccgcttcggcgaccttgacc	Protospacer
  .**.*  ***** **** ******************

18. spacer 9.1|2649377|31|LR134406|CRISPRCasFinder matches to AP014367 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C79, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.71

cgttgcaaatggtggtggaacaccaccgctg	CRISPR spacer
aaatgcaactggtggtggaacagcacctagt	Protospacer
 . ***** ************* ****

19. spacer 11.11|2900009|37|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.757

----gaacctccacgttttgggtcctgataggaattactat	CRISPR spacer
ttttgggctt----gtttagggtcctgattggaattactat	Protospacer
    *..*.*    **** ********** ***********

20. spacer 11.19|2900594|34|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028969 (Aminobacter sp. MSH1 plasmid pUSP1, complete sequence) position: , mismatch: 9, identity: 0.735

gcggcccggcatgatgactgtcaatgatgccaac	CRISPR spacer
tcggcccggcatgatgattctcaatgccctgagc	Protospacer
 ****************.* ****** . . *.*

21. spacer 11.19|2900594|34|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026266 (Aminobacter sp. MSH1 plasmid pAM01, complete sequence) position: , mismatch: 9, identity: 0.735

gcggcccggcatgatgactgtcaatgatgccaac	CRISPR spacer
tcggcccggcatgatgattctcaatgccctgagc	Protospacer
 ****************.* ****** . . *.*

22. spacer 5.1|467324|34|LR134406|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ctgcaccagctggttgagccgggctgcgatgaag	CRISPR spacer
gcccgcgagccggttgagccgggcggcgatggcc	Protospacer
 . *.* ***.************* ******.

23. spacer 5.1|467324|34|LR134406|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ctgcaccagctggttgagccgggctgcgatgaag	CRISPR spacer
gcccgcgagccggttgagccgggcggcgatggcc	Protospacer
 . *.* ***.************* ******.

24. spacer 5.1|467324|34|LR134406|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ctgcaccagctggttgagccgggctgcgatgaag	CRISPR spacer
gcccgcgagccggttgagccgggcggcgatggcc	Protospacer
 . *.* ***.************* ******.

25. spacer 5.1|467324|34|LR134406|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ctgcaccagctggttgagccgggctgcgatgaag	CRISPR spacer
gcccgcgagccggttgagccgggcggcgatggcc	Protospacer
 . *.* ***.************* ******.

26. spacer 6.18|659898|38|LR134406|PILER-CR matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 10, identity: 0.737

gggacgacggcaccaaagcgcatctgatcctcgacatg	CRISPR spacer
gcatcagcggcaccaacgcgcacctgatcctcgaacag	Protospacer
* . *..********* *****.***********   *

27. spacer 6.30|658667|37|LR134406|CRISPRCasFinder,CRT matches to NZ_CP018235 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed7, complete sequence) position: , mismatch: 10, identity: 0.73

ccttccaacccggcgccgtcctcgaggccgcccacct	CRISPR spacer
gcctcatcaacggcgccgtcctcgatgccgccgaccg	Protospacer
 *.**     *************** ****** ***

28. spacer 6.30|658667|37|LR134406|CRISPRCasFinder,CRT matches to NZ_CP016290 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.73

ccttccaacccggcgccgtcctcgaggccgcccacct	CRISPR spacer
gcctcatcaacggcgccgtcctcgatgccgccgaccg	Protospacer
 *.**     *************** ****** ***

29. spacer 6.47|659899|37|LR134406|CRISPRCasFinder,CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 10, identity: 0.73

ggacgacggcaccaaagcgcatctgatcctcgacatg	CRISPR spacer
catcagcggcaccaacgcgcacctgatcctcgaacag	Protospacer
 . *..********* *****.***********   *

30. spacer 10.2|2897343|37|LR134406|CRISPRCasFinder,CRT matches to MH590601 (Streptomyces phage Haizum, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

31. spacer 10.2|2897343|37|LR134406|CRISPRCasFinder,CRT matches to MF766046 (Streptomyces phage Diane, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

32. spacer 10.2|2897343|37|LR134406|CRISPRCasFinder,CRT matches to MF766048 (Streptomyces phage Tefunt, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

33. spacer 10.2|2897343|37|LR134406|CRISPRCasFinder,CRT matches to MF766044 (Streptomyces phage Amethyst, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

34. spacer 10.2|2897343|37|LR134406|CRISPRCasFinder,CRT matches to JX182370 (Streptomyces phage R4, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

35. spacer 10.2|2897343|37|LR134406|CRISPRCasFinder,CRT matches to MK392364 (Streptomyces phage Nishikigoi, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

36. spacer 10.13|2897345|37|LR134406|PILER-CR matches to MH590601 (Streptomyces phage Haizum, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

37. spacer 10.13|2897345|37|LR134406|PILER-CR matches to MF766046 (Streptomyces phage Diane, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

38. spacer 10.13|2897345|37|LR134406|PILER-CR matches to MF766048 (Streptomyces phage Tefunt, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

39. spacer 10.13|2897345|37|LR134406|PILER-CR matches to MF766044 (Streptomyces phage Amethyst, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

40. spacer 10.13|2897345|37|LR134406|PILER-CR matches to JX182370 (Streptomyces phage R4, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

41. spacer 10.13|2897345|37|LR134406|PILER-CR matches to MK392364 (Streptomyces phage Nishikigoi, complete genome) position: , mismatch: 10, identity: 0.73

tctacggcgacaagtaccttgacggctac-----attgctgc	CRISPR spacer
tgaacggcgacaagtacatcgacggctacgaccagtt-----	Protospacer
*  ************** *.*********     .**

42. spacer 11.19|2900594|34|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to NC_011811 (Erwinia phage phiEa21-4, complete genome) position: , mismatch: 10, identity: 0.706

gcggcccggcatgatgactgtcaatgatgccaac	CRISPR spacer
ttaaagcggcttgatgattgtcaatgatgccatt	Protospacer
 ...  **** ******.************** .

43. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 10, identity: 0.722

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
cggtgtagctgccgaccctgtcgccgccggcgcggc	Protospacer
*  .   *.********.* ***************

44. spacer 11.3|2899424|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047145 (Streptomyces sp. HF10 plasmid plas1, complete sequence) position: , mismatch: 11, identity: 0.694

gtggtgcatgatgcggatgcggctggtgatccagtc	CRISPR spacer
cgaccggctgatgcggatgcggctgctgctccagcg	Protospacer
  . .*  ***************** ** *****.

45. spacer 11.21|2900736|36|LR134406|PILER-CR,CRISPRCasFinder,CRT matches to KM083128 (Mycobacterium phage Sparky, complete genome) position: , mismatch: 12, identity: 0.667

cccccatgttgccgaccttctcgccgccggcgcggg	CRISPR spacer
gagccacgttggcgaccttctcgccgccgttcgact	Protospacer
   ***.**** ***************** .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1711752 : 1717959

Erysipelothrix_phage(100.0%)

tail,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH70246.1\|1711752_1712568_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A2I4R671	Erysipelothrix_phage	1.4e-66	53.7
VEH70247.1\|1712567_1713257_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A2I4R671	Erysipelothrix_phage	2.5e-40	68.9
VEH70248.1\|1713272_1713560_+	Uncharacterised protein	NA	NA	NA	NA
VEH70249.1\|1713556_1714135_-	Uncharacterised protein	NA	NA	NA	NA
VEH70250.1\|1714217_1714652_+	Bacteriophage protein of uncharacterised function (DUF646)	NA	NA	NA	NA
VEH70251.1\|1714746_1714998_+	Uncharacterised protein	A0A2K5B293	Erysipelothrix_phage	1.3e-12	39.2
VEH70252.1\|1714978_1715917_-	Uncharacterised protein	NA	NA	NA	NA
VEH70253.1\|1715930_1716863_-	EcoKMrr	NA	NA	NA	NA
VEH70254.1\|1716974_1717130_+	Uncharacterised protein	A0A2K5B294	Erysipelothrix_phage	1.5e-06	68.8
VEH70255.1\|1717220_1717520_+\|tail	phage major tail protein, phi13 family	A0A2K5B294	Erysipelothrix_phage	1.3e-25	64.3
VEH70256.1\|1717593_1717959_+	Uncharacterised protein	A0A2K5B295	Erysipelothrix_phage	1.6e-22	48.6

DBSCAN-SWA_2

1933557 : 1989308

Streptococcus_phage(18.18%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH70454.1\|1933557_1934829_+\|tRNA	Glutamyl-tRNA reductase	NA	NA	NA	NA
VEH70455.1\|1934825_1935905_+	Ferrochelatase	NA	NA	NA	NA
VEH70456.1\|1935876_1936590_+	putative heme peroxidase	NA	NA	NA	NA
VEH70457.1\|1936684_1938310_-	Porphobilinogen deaminase	NA	NA	NA	NA
VEH70458.1\|1938382_1939120_-	Uncharacterised protein	NA	NA	NA	NA
VEH70459.1\|1939185_1939758_+	transcriptional regulator BetI	NA	NA	NA	NA
VEH70460.1\|1939729_1941115_-	Uncharacterised protein	NA	NA	NA	NA
VEH70461.1\|1941629_1942475_+	Uncharacterized oxidoreductase MSMEG_2408	A0A2H4PQR8	Staphylococcus_phage	9.4e-50	41.3
VEH70462.1\|1942716_1943331_-	Predicted acetyltransferase	NA	NA	NA	NA
VEH70463.1\|1943504_1945643_-	Predicted P-loop ATPase	NA	NA	NA	NA
VEH70464.1\|1945764_1949154_-	Protein of uncharacterised function (DUF499)	NA	NA	NA	NA
VEH70465.1\|1949194_1950298_-	Uncharacterized conserved protein	Q9JMP5	Wolbachia_phage	4.5e-36	33.7
VEH70466.1\|1950307_1953133_-	Protein of uncharacterised function (DUF1156)	K9MDJ7	Sulfolobus_virus	4.6e-32	24.6
VEH70467.1\|1953129_1956693_-	RNA polymerase-associated protein rapA	A0A1B1IUI1	uncultured_Mediterranean_phage	9.8e-48	27.3
VEH70468.1\|1957075_1957858_-	Uncharacterised protein	NA	NA	NA	NA
VEH70469.1\|1958208_1958811_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
VEH70470.1\|1958807_1959203_-	ribosome-associated protein	NA	NA	NA	NA
VEH70471.1\|1959189_1959858_-	Probable nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
VEH70472.1\|1959854_1959989_-	Uncharacterised protein	NA	NA	NA	NA
VEH70473.1\|1960062_1961304_-	Gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	8.2e-103	49.6
VEH70474.1\|1961492_1962560_-	Glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	8.7e-61	41.4
VEH70475.1\|1962549_1963995_-	GTP-binding protein obg	NA	NA	NA	NA
VEH70476.1\|1964106_1964364_-	50S ribosomal protein L27	NA	NA	NA	NA
VEH70477.1\|1964377_1964686_-	50S ribosomal protein L21	NA	NA	NA	NA
VEH70478.1\|1965155_1967783_-	Ribonuclease G	NA	NA	NA	NA
VEH70479.1\|1968014_1969202_+	Mannan endo-1,4-beta-mannosidase precursor	NA	NA	NA	NA
VEH70480.1\|1969322_1969937_+	GDSL-like Lipase/Acylhydrolase	NA	NA	NA	NA
VEH70481.1\|1969974_1971306_-	Folylpolyglutamate synthase	NA	NA	NA	NA
VEH70482.1\|1971335_1971893_+	Methylamine utilisation protein MauE	NA	NA	NA	NA
VEH70483.1\|1971904_1972699_+	Protein-disulfide isomerase	NA	NA	NA	NA
VEH70484.1\|1972804_1975363_+\|tRNA	Valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	5.2e-160	37.1
VEH70485.1\|1975424_1978631_-\|protease	Tricorn protease homolog 1	NA	NA	NA	NA
VEH70486.1\|1978666_1979950_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.4e-135	57.3
VEH70487.1\|1980045_1980654_-\|protease	ATP-dependent Clp protease proteolytic subunit 1	A0A248SJ97	Salicola_phage	1.1e-31	39.2
VEH70488.1\|1980650_1981283_-\|protease	ATP-dependent Clp protease proteolytic subunit 2	A0A223W000	Agrobacterium_phage	2.9e-43	48.9
VEH70489.1\|1981325_1982492_-	pheromone autoinducer 2 transporter	NA	NA	NA	NA
VEH70490.1\|1982496_1983939_-	Trigger factor	NA	NA	NA	NA
VEH70491.1\|1984009_1985491_+\|protease	ATP-dependent zinc metalloprotease FtsH	R4TQL5	Phaeocystis_globosa_virus	1.7e-33	38.5
VEH70492.1\|1985487_1986537_+	lipoprotein NlpI	NA	NA	NA	NA
VEH70493.1\|1986737_1987037_+	YCII-related domain	NA	NA	NA	NA
VEH70494.1\|1987098_1987476_+	Membrane protein of uncharacterised function	NA	NA	NA	NA
VEH70495.1\|1988555_1989308_+\|protease	CAAX amino terminal protease self- immunity	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134406

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection