CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134397	Listeria monocytogenes strain NCTC7973 genome assembly, chromosome: 1	3 crisprs	DinG,cas3,WYL,casR,DEDDh,csa3,csn2,cas2,cas1,cas9	4	31	5	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134397_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134397_2

523845-524389

Orphan

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRT
TTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder

8 spacers

The CRISPR arrays of LR134397_2

>merge|LR134397|2|523845-524389|PILER-CR,CRT,CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAATTCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACCGTTTTAGTTACTTATTGTGAAATGTAAATTGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGCGTTTTAGTTACTTATTGTGAAATGTAAATGCGATTTTTGTCAAAGGGACAGCGATGGGTTACAAGTTTTAGTTACTTATTGTGAAATGTAAATTTACCACCAAAGTCCCTACACTCAATACCACCAAAGCGTTTTAGTTACTTATTGTGAAATGTAAATTTTTCTACTCCTGCTTCTAAAATGTCGTTTATAAGTTTTAGTTACTTATTGTGAAATGTAAATCTAAAACATCCTTCACTGTATCAACTCCTTTCTATATTTTAGTTACTTATTGTGAAATGTAAATAAAATAGGAGGAAATAAATTATGACTATCAAATTAAGTTTTAGTTACTTATTGTGAAATGTAAATTTTGTTGAATCAACGGATATAGATTTTACAATTTCGTTTTAGTTACTTATTATGAAATGTAAAT

>LR134397|2|1|523845-524389|PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC
GTTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT
ATTTTAGTTACTTATTGTGAAATGTAAAT	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTGTTGAATCAACGGATATAGATTTTACAATTTC
GTTTTAGTTACTTATTATGAAATGTAAAT

>LR134397|2|1|523845-524389|CRT
GTTTTAGTTACTTATTGTGAAATGTAAAT	TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC
GTTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT
ATTTTAGTTACTTATTGTGAAATGTAAAT	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTTGTTGAATCAACGGATATAGATTTTACAATTTC
GTTTTAGTTACTTATTATGAAATGTAAAT

>LR134397|2|2|523846-524389|CRISPRCasFinder
TTTTAGTTACTTATTGTGAAATGTAAAT	TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACCG
TTTTAGTTACTTATTGTGAAATGTAAAT	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGCG
TTTTAGTTACTTATTGTGAAATGTAAAT	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	TTACCACCAAAGTCCCTACACTCAATACCACCAAAGCG
TTTTAGTTACTTATTGTGAAATGTAAAT	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	CTAAAACATCCTTCACTGTATCAACTCCTTTCTATA
TTTTAGTTACTTATTGTGAAATGTAAAT	AAAATAGGAGGAAATAAATTATGACTATCAAATTAAG
TTTTAGTTACTTATTGTGAAATGTAAAT	TTTGTTGAATCAACGGATATAGATTTTACAATTTCG
TTTTAGTTACTTATTATGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134397.1\|VEH57913.1\|515655_517716_+\|Mannitol-specific-cryptic-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|226234
LR134397.1\|VEH57918.1\|519889_520936_+\|Sorbitol-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
LR134397.1\|VEH57914.1\|517719_518322_+\|Arabinose-5-phosphate-isomerase-GutQ	unknown	unknown	gnl\|CDD\|223865
LR134397.1\|VEH57923.1\|525466_526147_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
LR134397.1\|VEH57930.1\|532438_532807_-\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|226282
LR134397.1\|VEH57931.1\|532953_534369_+\|Multidrug-resistance-protein-B	unknown	unknown	gnl\|CDD\|129794
LR134397.1\|VEH57915.1\|518349_518817_+\|EIIABC-Fru	unknown	unknown	gnl\|CDD\|238129
LR134397.1\|VEH57924.1\|526171_526534_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|131113
LR134397.1\|VEH57926.1\|527377_529213_+\|LPXTG-cell-wall-anchor-domain	unknown	unknown	gnl\|CDD\|380190
LR134397.1\|VEH57921.1\|522670_523606_+\|Ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
LR134397.1\|VEH57928.1\|529791_531222_-\|Bacterial-capsule-synthesis-protein-PGA_cap	unknown	unknown	gnl\|CDD\|225399
LR134397.1\|VEH57920.1\|521259_522531_+\|PTS-system-galactitol-specific-EIIC-component	unknown	unknown	gnl\|CDD\|226298
LR134397.1\|VEH57925.1\|526537_526996_-\|MarR-family	unknown	unknown	gnl\|CDD\|378956
LR134397.1\|VEH57922.1\|524780_525359_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134397.1\|VEH57917.1\|519242_519893_+\|Ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
LR134397.1\|VEH57916.1\|518833_519232_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134397.1\|VEH57927.1\|529310_529745_+\|Putative-universal-stress-protein-SAV1710	unknown	unknown	gnl\|CDD\|366180
LR134397.1\|VEH57929.1\|531342_532158_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|223483
LR134397.1\|VEH57912.1\|514896_515547_+\|Transaldolase	unknown	unknown	gnl\|CDD\|223254
LR134397.1\|VEH57919.1\|520951_521245_+\|Galactitol-specific-phosphotransferase-enzyme-IIB-component	unknown	unknown	gnl\|CDD\|99908

Protein	Function_ID	Function_description	E-value
LR134397.1\|VEH57913.1\|515655_517716_+\|Mannitol-specific-cryptic-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.55419e-80
LR134397.1\|VEH57918.1\|519889_520936_+\|Sorbitol-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
LR134397.1\|VEH57914.1\|517719_518322_+\|Arabinose-5-phosphate-isomerase-GutQ	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75
LR134397.1\|VEH57923.1\|525466_526147_+\|glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
LR134397.1\|VEH57931.1\|532953_534369_+\|Multidrug-resistance-protein-B	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.34585e-79
LR134397.1\|VEH57915.1\|518349_518817_+\|EIIABC-Fru	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37
LR134397.1\|VEH57924.1\|526171_526534_-\|Uncharacterised-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	8.55421e-67
LR134397.1\|VEH57926.1\|527377_529213_+\|LPXTG-cell-wall-anchor-domain	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	7.10028e-119
LR134397.1\|VEH57921.1\|522670_523606_+\|Ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	6.72103e-154
LR134397.1\|VEH57920.1\|521259_522531_+\|PTS-system-galactitol-specific-EIIC-component	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	2.71123e-177
LR134397.1\|VEH57925.1\|526537_526996_-\|MarR-family	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	8.31646e-13
LR134397.1\|VEH57930.1\|532438_532807_-\|Predicted-membrane-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	8.73125e-42
LR134397.1\|VEH57928.1\|529791_531222_-\|Bacterial-capsule-synthesis-protein-PGA_cap	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	9.64038e-100
LR134397.1\|VEH57917.1\|519242_519893_+\|Ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	3.07191e-108
LR134397.1\|VEH57927.1\|529310_529745_+\|Putative-universal-stress-protein-SAV1710	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	2.92726e-27
LR134397.1\|VEH57929.1\|531342_532158_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	3.00317e-49
LR134397.1\|VEH57912.1\|514896_515547_+\|Transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	2.47908e-62
LR134397.1\|VEH57919.1\|520951_521245_+\|Galactitol-specific-phosphotransferase-enzyme-IIB-component	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27

>LR134397.1|VEH57921.1|522670_523606_+|Ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGADRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>LR134397.1|VEH57920.1|521259_522531_+|PTS-system-galactitol-specific-EIIC-component
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAILSSIINMAIIFKIADWTQKDVENVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFVLPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>LR134397.1|VEH57919.1|520951_521245_+|Galactitol-specific-phosphotransferase-enzyme-IIB-component
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>LR134397.1|VEH57918.1|519889_520936_+|Sorbitol-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEQPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>LR134397.1|VEH57917.1|519242_519893_+|Ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNDELAKECTLAGADLIVVGSYLFEGDIEANLEKLSKGVLTE
>LR134397.1|VEH57916.1|518833_519232_+|Uncharacterised-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>LR134397.1|VEH57915.1|518349_518817_+|EIIABC-Fru
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>LR134397.1|VEH57914.1|517719_518322_+|Arabinose-5-phosphate-isomerase-GutQ
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>LR134397.1|VEH57913.1|515655_517716_+|Mannitol-specific-cryptic-phosphotransferase-enzyme-IIA-component
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLINTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>LR134397.1|VEH57912.1|514896_515547_+|Transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPSILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALAGADFVAPYVNRMSAANIDPFKEITQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>LR134397.1|VEH57922.1|524780_525359_+|Uncharacterised-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFIAENTEEVKNYQLIKEQVAGKYK
>LR134397.1|VEH57923.1|525466_526147_+|glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>LR134397.1|VEH57924.1|526171_526534_-|Uncharacterised-protein
MMEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>LR134397.1|VEH57925.1|526537_526996_-|MarR-family
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGDAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>LR134397.1|VEH57926.1|527377_529213_+|LPXTG-cell-wall-anchor-domain
MKKALKLFLAMICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSINNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYDETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLMADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPEIKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>LR134397.1|VEH57927.1|529310_529745_+|Putative-universal-stress-protein-SAV1710
MMEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>LR134397.1|VEH57928.1|529791_531222_-|Bacterial-capsule-synthesis-protein-PGA_cap
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>LR134397.1|VEH57929.1|531342_532158_-|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDQRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGISPKDFADSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>LR134397.1|VEH57930.1|532438_532807_-|Predicted-membrane-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVAVLLV
>LR134397.1|VEH57931.1|532953_534369_+|Multidrug-resistance-protein-B
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFRYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK

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Crispr_ID: LR134397_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134397_3

2642785-2644869

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR

31 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LR134397_3

>merge|LR134397|3|2642785-2644869|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR
TATGTGTTGGTATTCAGAATAATGTATCTCTAAAACCAAGTTAAAGATATCAACTACATTCAGACAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGCTTGCGTTTAGAGGACGAAGAAAAACTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGTAATCTCCTTTTCCAAGGACCATCACGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGATAGATAGTGTTAGAAGGGAAATTTAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTCAGACTATGTTTTCAACAAAGGGATGCTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGCCTGTTTGGGCTGTGAACCGAGCTGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGCTTGCGTTTAGAGGACGAAGAAAAACTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGTAATCTCCTTTTCCAAGGACCATCACGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGATAGATAGTGTTAGAAGGGAAATTTAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTCAGACTATGTTTTCAACAAAGGGATGCTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGCCTGTTTGGGCTGTGAACCGAGCTGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCATAGTCTGTTGGAACATCTGCATGAACTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTCCCAGCCGTAATAGATACTAAATTACCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTGTTTCTTTCCCACCTTCTGGTTCAACGCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCTGCCTCGCTTTACTCTTCGTTATCTCCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAACACACCGAGCAATAGAAATACACTGTTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGAATAATCCGTACAGCCTTATCATTATCAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGAAAAAGTTGTCGATCTTACAAAAAAATTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACACCAACGGCGCGCAAAAGAAAATCATTAAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGCGCACGCCAGTCTACACTTAGACTTGGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCTATAGAGATCCATTTAACCGTTTCATACGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGCGTCAGAGCCCTCTTCTTCCACACGTGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCGCTTCCCATCGATTTAAACGCATTTACAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCTTTGGAGGAACTGAATTTACTGGCACTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCCTTGCTTGACCCAACTAGTGACTTCTTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGTTGTCGTCGGGTAGTTCGCCCATATCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATTCGTGAATGCCGACAATCGTTCATTTCCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGTGAGGTAAATCAATATAAAGATGCATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGTCCACTCTAGTAGCATCTAGGTCTAGGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTCATTTTTAATAGTTTCAATTGCTGATAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCAAAAGCGCGCATGAGGAAGAAATCACGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>LR134397|3|3|2642785-2644869|CRISPRCasFinder
TATGTGTTGGTATTCAGAATAATGTATCTCTAAAAC	CAAGTTAAAGATATCAACTACATTCAGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCTTGCGTTTAGAGGACGAAGAAAAACTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTAATCTCCTTTTCCAAGGACCATCACGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGATAGATAGTGTTAGAAGGGAAATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCAGACTATGTTTTCAACAAAGGGATGCTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCCTGTTTGGGCTGTGAACCGAGCTGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCTTGCGTTTAGAGGACGAAGAAAAACTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTAATCTCCTTTTCCAAGGACCATCACGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGATAGATAGTGTTAGAAGGGAAATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCAGACTATGTTTTCAACAAAGGGATGCTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCCTGTTTGGGCTGTGAACCGAGCTGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATAGTCTGTTGGAACATCTGCATGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCCCAGCCGTAATAGATACTAAATTACCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTGTTTCTTTCCCACCTTCTGGTTCAACGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTGCCTCGCTTTACTCTTCGTTATCTCCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACACACCGAGCAATAGAAATACACTGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAATAATCCGTACAGCCTTATCATTATCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAAAAAGTTGTCGATCTTACAAAAAAATTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCAACGGCGCGCAAAAGAAAATCATTAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGCGCACGCCAGTCTACACTTAGACTTGGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTATAGAGATCCATTTAACCGTTTCATAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCGTCAGAGCCCTCTTCTTCCACACGTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTTCCCATCGATTTAAACGCATTTACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCTTTGGAGGAACTGAATTTACTGGCACTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCCTTGCTTGACCCAACTAGTGACTTCTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTGTCGTCGGGTAGTTCGCCCATATCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTCGTGAATGCCGACAATCGTTCATTTCCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGTGAGGTAAATCAATATAAAGATGCATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGTCCACTCTAGTAGCATCTAGGTCTAGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTCATTTTTAATAGTTTCAATTGCTGATAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCAAAAGCGCGCATGAGGAAGAAATCACGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>LR134397|3|2|2642785-2644869|CRT
TATGTGTTGGTATTCAGAATAATGTATCTCTAAAAC	CAAGTTAAAGATATCAACTACATTCAGACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCTTGCGTTTAGAGGACGAAGAAAAACTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTAATCTCCTTTTCCAAGGACCATCACGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGATAGATAGTGTTAGAAGGGAAATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCAGACTATGTTTTCAACAAAGGGATGCTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCCTGTTTGGGCTGTGAACCGAGCTGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCTTGCGTTTAGAGGACGAAGAAAAACTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTAATCTCCTTTTCCAAGGACCATCACGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGATAGATAGTGTTAGAAGGGAAATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCAGACTATGTTTTCAACAAAGGGATGCTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCCTGTTTGGGCTGTGAACCGAGCTGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATAGTCTGTTGGAACATCTGCATGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCCCAGCCGTAATAGATACTAAATTACCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTGTTTCTTTCCCACCTTCTGGTTCAACGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTGCCTCGCTTTACTCTTCGTTATCTCCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACACACCGAGCAATAGAAATACACTGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAATAATCCGTACAGCCTTATCATTATCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAAAAAGTTGTCGATCTTACAAAAAAATTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCAACGGCGCGCAAAAGAAAATCATTAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGCGCACGCCAGTCTACACTTAGACTTGGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTATAGAGATCCATTTAACCGTTTCATAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCGTCAGAGCCCTCTTCTTCCACACGTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTTCCCATCGATTTAAACGCATTTACA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CCTTTGGAGGAACTGAATTTACTGGCACTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCCTTGCTTGACCCAACTAGTGACTTCTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTGTCGTCGGGTAGTTCGCCCATATCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTCGTGAATGCCGACAATCGTTCATTTCCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGTGAGGTAAATCAATATAAAGATGCATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGTCCACTCTAGTAGCATCTAGGTCTAGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTCATTTTTAATAGTTTCAATTGCTGATAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCAAAAGCGCGCATGAGGAAGAAATCACGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>LR134397|3|2|2642850-2643151|PILER-CR
AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCTTGCGTTTAGAGGACGAAGAAAAACT
AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTAATCTCCTTTTCCAAGGACCATCACG
TGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGATAGATAGTGTTAGAAGGGAAATTTA
AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCAGACTATGTTTTCAACAAAGGGATGCT
AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGCCTGTTTGGGCTGTGAACCGAGCTGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGCTTGCGTTTAGAGGACGAAGAAAAACTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTAATCTCCTTTTCCAAGGACCATCACGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGATAGATAGTGTTAGAAGGGAAATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCAGACTATGTTTTCAACAAAGGGATGCTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCCTGTTTGGGCTGTGAACCGAGCTGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATAGTCTGTTGGAACATCTGCATGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCCCAGCCGTAATAGATACTAAATTACCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTGTTTCTTTCCCACCTTCTGGTTCAACGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTGCCTCGCTTTACTCTTCGTTATCTCCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACACACCGAGCAATAGAAATACACTGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAATAATCCGTACAGCCTTATCATTATCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAAAAAGTTGTCGATCTTACAAAAAAATTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCAACGGCGCGCAAAAGAAAATCATTAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGCGCACGCCAGTCTACACTTAGACTTGGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTATAGAGATCCATTTAACCGTTTCATAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCGTCAGAGCCCTCTTCTTCCACACGTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTTCCCATCGATTTAAACGCATTTACAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCTTTGGAGGAACTGAATTTACTGGCACTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCCTTGCTTGACCCAACTAGTGACTTCTTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGTTGTCGTCGGGTAGTTCGCCCATATCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATTCGTGAATGCCGACAATCGTTCATTTCCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGTGAGGTAAATCAATATAAAGATGCATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGTCCACTCTAGTAGCATCTAGGTCTAGGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTCATTTTTAATAGTTTCAATTGCTGATAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCAAAAGCGCGCATGAGGAAGAAATCACGA
	CCTTTGGAGGAACTGAATTTACTGGCACTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCCTTGCTTGACCCAACTAGTGACTTCTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTGTCGTCGGGTAGTTCGCCCATATCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTCGTGAATGCCGACAATCGTTCATTTCCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGTGAGGTAAATCAATATAAAGATGCATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGTCCACTCTAGTAGCATCTAGGTCTAGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTCATTTTTAATAGTTTCAATTGCTGATAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCAAAAGCGCGCATGAGGAAGAAATCACGA


>LR134397|3|3|2643248-2644869|PILER-CR
	AGCTTGCGTTTAGAGGACGAAGAAAAACT
AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTAATCTCCTTTTCCAAGGACCATCACG
TGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGATAGATAGTGTTAGAAGGGAAATTTA
AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCAGACTATGTTTTCAACAAAGGGATGCT
AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGCCTGTTTGGGCTGTGAACCGAGCTGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGCTTGCGTTTAGAGGACGAAGAAAAACTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTAATCTCCTTTTCCAAGGACCATCACGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGATAGATAGTGTTAGAAGGGAAATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCAGACTATGTTTTCAACAAAGGGATGCTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCCTGTTTGGGCTGTGAACCGAGCTGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATAGTCTGTTGGAACATCTGCATGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCCCAGCCGTAATAGATACTAAATTACCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTGTTTCTTTCCCACCTTCTGGTTCAACGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTGCCTCGCTTTACTCTTCGTTATCTCCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACACACCGAGCAATAGAAATACACTGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAATAATCCGTACAGCCTTATCATTATCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAAAAAGTTGTCGATCTTACAAAAAAATTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCAACGGCGCGCAAAAGAAAATCATTAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGCGCACGCCAGTCTACACTTAGACTTGGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTATAGAGATCCATTTAACCGTTTCATAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCGTCAGAGCCCTCTTCTTCCACACGTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTTCCCATCGATTTAAACGCATTTACAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCTTTGGAGGAACTGAATTTACTGGCACTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCCTTGCTTGACCCAACTAGTGACTTCTTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGTTGTCGTCGGGTAGTTCGCCCATATCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATTCGTGAATGCCGACAATCGTTCATTTCCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGTGAGGTAAATCAATATAAAGATGCATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGTCCACTCTAGTAGCATCTAGGTCTAGGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTCATTTTTAATAGTTTCAATTGCTGATAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCAAAAGCGCGCATGAGGAAGAAATCACGA
	CCTTTGGAGGAACTGAATTTACTGGCACTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCCTTGCTTGACCCAACTAGTGACTTCTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTGTCGTCGGGTAGTTCGCCCATATCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTCGTGAATGCCGACAATCGTTCATTTCCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGTGAGGTAAATCAATATAAAGATGCATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGTCCACTCTAGTAGCATCTAGGTCTAGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTCATTTTTAATAGTTTCAATTGCTGATAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCAAAAGCGCGCATGAGGAAGAAATCACGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>LR134397|3|4|2644305-2644869|PILER-CR
	AGCTTGCGTTTAGAGGACGAAGAAAAACT
AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTAATCTCCTTTTCCAAGGACCATCACG
TGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGATAGATAGTGTTAGAAGGGAAATTTA
AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCAGACTATGTTTTCAACAAAGGGATGCT
AGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGCCTGTTTGGGCTGTGAACCGAGCTGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGCTTGCGTTTAGAGGACGAAGAAAAACTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGTAATCTCCTTTTCCAAGGACCATCACGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGATAGATAGTGTTAGAAGGGAAATTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCAGACTATGTTTTCAACAAAGGGATGCTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGCCTGTTTGGGCTGTGAACCGAGCTGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCATAGTCTGTTGGAACATCTGCATGAACT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTCCCAGCCGTAATAGATACTAAATTACCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTGTTTCTTTCCCACCTTCTGGTTCAACGC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTGCCTCGCTTTACTCTTCGTTATCTCCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AACACACCGAGCAATAGAAATACACTGTTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAATAATCCGTACAGCCTTATCATTATCAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GAAAAAGTTGTCGATCTTACAAAAAAATTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ACCAACGGCGCGCAAAAGAAAATCATTAAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGCGCACGCCAGTCTACACTTAGACTTGGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCTATAGAGATCCATTTAACCGTTTCATAC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCGTCAGAGCCCTCTTCTTCCACACGTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTTCCCATCGATTTAAACGCATTTACAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCCTTTGGAGGAACTGAATTTACTGGCACTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCCTTGCTTGACCCAACTAGTGACTTCTTCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGTTGTCGTCGGGTAGTTCGCCCATATCTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACATTCGTGAATGCCGACAATCGTTCATTTCCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGGTGAGGTAAATCAATATAAAGATGCATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCGTCCACTCTAGTAGCATCTAGGTCTAGGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTCATTTTTAATAGTTTCAATTGCTGATAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCAAAAGCGCGCATGAGGAAGAAATCACGA
	CCTTTGGAGGAACTGAATTTACTGGCACTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCCTTGCTTGACCCAACTAGTGACTTCTTC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTTGTCGTCGGGTAGTTCGCCCATATCT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	ATTCGTGAATGCCGACAATCGTTCATTTCCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GGTGAGGTAAATCAATATAAAGATGCATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCGTCCACTCTAGTAGCATCTAGGTCTAGG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTCATTTTTAATAGTTTCAATTGCTGATAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCAAAAGCGCGCATGAGGAAGAAATCACGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134397.1\|VEH61094.1\|2640460_2641312_-\|Glyoxal-reductase	unknown	unknown	gnl\|CDD\|381359
LR134397.1\|VEH61105.1\|2646854_2650868_-\|Uncharacterized-protein-conserved-in-bacteria	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134397.1\|VEH61115.1\|2653870_2654668_-\|Energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
LR134397.1\|VEH61080.1\|2624482_2624959_-\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|225283
LR134397.1\|VEH61088.1\|2630916_2631804_-\|HTH-type-transcriptional-repressor-nemR	unknown	unknown	gnl\|CDD\|224228
LR134397.1\|VEH61104.1\|2645987_2646854_-\|CRISPR-associated-endonuclease-Cas1,-subtype-II/NMENI	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LR134397.1\|VEH61092.1\|2638892_2640419_+\|Exo-glucosaminidase-lytG-precursor	unknown	unknown	gnl\|CDD\|224619
LR134397.1\|VEH61100.1\|2644997_2645693_-\|CRISPR-type-II-A/NMEMI-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LR134397.1\|VEH61107.1\|2651368_2651848_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134397.1\|VEH61102.1\|2645649_2645991_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134397.1\|VEH61109.1\|2652072_2652465_-\|BS10	unknown	unknown	gnl\|CDD\|178888
LR134397.1\|VEH61111.1\|2652486_2652924_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
LR134397.1\|VEH61082.1\|2624958_2627946_-\|Putative-formate-dehydrogenase-SA2102	unknown	unknown	gnl\|CDD\|225918
LR134397.1\|VEH61096.1\|2641333_2641756_-\|HTH-type-transcriptional-regulator-AdhR	unknown	unknown	gnl\|CDD\|133384
LR134397.1\|VEH61117.1\|2654670_2655537_-\|Energy-coupling-factor-transporter-ATP-binding-protein-EcfA2	unknown	unknown	gnl\|CDD\|237454
LR134397.1\|VEH61098.1\|2641877_2642237_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134397.1\|VEH61086.1\|2629334_2630816_-\|Multidrug-resistance-protein-B	unknown	unknown	gnl\|CDD\|129794
LR134397.1\|VEH61090.1\|2637595_2638624_-\|antiporter-inner-membrane-protein	unknown	unknown	gnl\|CDD\|378455
LR134397.1\|VEH61113.1\|2653118_2653865_-\|tRNA-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|234577
LR134397.1\|VEH61084.1\|2628444_2629287_+\|S-adenosyl-l-methionine-hydroxide-adenosyltransferase	unknown	unknown	gnl\|CDD\|224824

Protein	Function_ID	Function_description	E-value
LR134397.1\|VEH61094.1\|2640460_2641312_-\|Glyoxal-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	5.13526e-171
LR134397.1\|VEH61105.1\|2646854_2650868_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LR134397.1\|VEH61115.1\|2653870_2654668_-\|Energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	5.34175e-53
LR134397.1\|VEH61080.1\|2624482_2624959_-\|Uncharacterized-conserved-protein	gnl\|CDD\|225283	COG2427, COG2427, Uncharacterized conserved protein [Function unknown].	1.89012e-27
LR134397.1\|VEH61088.1\|2630916_2631804_-\|HTH-type-transcriptional-repressor-nemR	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.35403e-15
LR134397.1\|VEH61104.1\|2645987_2646854_-\|CRISPR-associated-endonuclease-Cas1,-subtype-II/NMENI	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.276e-135
LR134397.1\|VEH61092.1\|2638892_2640419_+\|Exo-glucosaminidase-lytG-precursor	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	7.69416e-69
LR134397.1\|VEH61100.1\|2644997_2645693_-\|CRISPR-type-II-A/NMEMI-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.20094e-115
LR134397.1\|VEH61102.1\|2645649_2645991_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.60762e-45
LR134397.1\|VEH61109.1\|2652072_2652465_-\|BS10	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	4.44953e-85
LR134397.1\|VEH61111.1\|2652486_2652924_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
LR134397.1\|VEH61082.1\|2624958_2627946_-\|Putative-formate-dehydrogenase-SA2102	gnl\|CDD\|225918	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only].	0
LR134397.1\|VEH61096.1\|2641333_2641756_-\|HTH-type-transcriptional-regulator-AdhR	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	5.12858e-42
LR134397.1\|VEH61117.1\|2654670_2655537_-\|Energy-coupling-factor-transporter-ATP-binding-protein-EcfA2	gnl\|CDD\|237454	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
LR134397.1\|VEH61113.1\|2653118_2653865_-\|tRNA-pseudouridine-synthase-A	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.82266e-128
LR134397.1\|VEH61086.1\|2629334_2630816_-\|Multidrug-resistance-protein-B	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.21007e-108
LR134397.1\|VEH61090.1\|2637595_2638624_-\|antiporter-inner-membrane-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	3.84035e-115
LR134397.1\|VEH61084.1\|2628444_2629287_+\|S-adenosyl-l-methionine-hydroxide-adenosyltransferase	gnl\|CDD\|224824	COG1912, COG1912, Uncharacterized conserved protein [Function unknown].	4.67495e-126

>LR134397.1|VEH61098.1|2641877_2642237_-|Uncharacterised-protein
MKKTSIIFILCALLSITACSNTENETQATEATGTIEQVETDAILINNFKEKKDKYNPEAAIRFDIVDKYYDETGNKIKITDLNKNDDVKIILTNDFPIRETNPAQIDPKYVQKIIRLNK
>LR134397.1|VEH61096.1|2641333_2641756_-|HTH-type-transcriptional-regulator-AdhR
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKKVRELLVYKIDSYDSHIAQFKAGELNADNVEKLWERDKF
>LR134397.1|VEH61094.1|2640460_2641312_-|Glyoxal-reductase
MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKTGYRHIDTAQSYMNEEAVGRGIAASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYVDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQTANLAILRKEGVAIEAWAPFAEGKNDVFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKEEIAGLNQGESQFFSHADPEMVKWMASRKLNV
>LR134397.1|VEH61092.1|2638892_2640419_+|Exo-glucosaminidase-lytG-precursor
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIDSNQSLAAIGTVAENKKQEVIWSAPYNTENANKIGTLENYSGRNLEISWEAKTEKGLWYFIREKNKDIGWINSNALKISYHQKEDENVHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALEADKKITRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYDNEKLELVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDSQNSLGWIKAIDINS
>LR134397.1|VEH61090.1|2637595_2638624_-|antiporter-inner-membrane-protein
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIALADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPHKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLAEKIIPYLS
>LR134397.1|VEH61088.1|2630916_2631804_-|HTH-type-transcriptional-repressor-nemR
MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYFTSKEELAIVIFKQEYSVLHQRLEYTMGLDGTKKDNFTECLKIIIHFYTENGEILNITFSQTMIDDDFNAFLQNVRLKNMEWVKYQLLEVYGEETKPYINDITMLLSGMAAMYVFASGSKNVNTGLIERAIPYVVRRLDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAKLREALEELNVGIENADIADSDKWQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHVPASLTKEVNKLEACVNGLL
>LR134397.1|VEH61086.1|2629334_2630816_-|Multidrug-resistance-protein-B
MNSTAVEQPVDVNGKSYSRSLLVVTMIIGAFVAILNQTLLATALPMIMDDLHITAATGQWLTTAFLLTNGIMIPITALLIEKISSKTLFITAMTVFTIGTIIASVAGSFPILLTGRIVQAAGAGIMMPLLQTIFLLIFPREKRGAAMGLMGLVIAFAPAIGPTLSGWIVDSYDWRVLFLILIPIAVIDIILAFFGMKKVVKLTDTKIDFLSIVMSSIGFGALLYGFSSAGNDGWGDTTVITMLIVGVVVIALFVWRQLVIDNPMLELHVFKYPVFSLSVILGSIVTMAMIGAEIVLPLYIQTIRGESALQSGLLLLPGAIIMGIMSPITGIIFDKIGAKWLTITGVTILTIGTIPFMFLTMDTPLWYIVVFYAVRFFGISMAMMPVSTAGMNALPNHLINHGSAVNNTIRQIAGSIGTAVLITVLTNVTKDNMPGKALMATDPASFAQKAQDASLDGMRAAFMVAAIFAAIGMILSLFLKTKKQEPIVKEYTK
>LR134397.1|VEH61084.1|2628444_2629287_+|S-adenosyl-l-methionine-hydroxide-adenosyltransferase
MTKQLLVLQSDFGISDGAVSAMYGVINSVSIDLQIYDLTHQIPQFNIWEASYRLLQTVTYWPEDTIFVSIVDPGVGSKRRSVAVLTEDGHYIITPDNGTLTHIAHYGTIKAVRLIDEEKNRLPKSGASHTFHGRDIFAYTAARLAAGVINFEDIGPAANPDSIVSLSLSDSYLEGDQAFGTIDIIDRPFGNLWTNIRRTDFFELGANYGDSIEVLIKHHDRIVYKNFVTYSRSFADLRIGEALIYVNSLDNLGLGINQGSFVDAYSVGTGTSWKVTLKKV
>LR134397.1|VEH61082.1|2624958_2627946_-|Putative-formate-dehydrogenase-SA2102
MGAKVSVQINGVARDVVEGTRILDYLNAEGIQHPHICYSEQIGPIQSCDTCMCEVDGELVRACSTNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDDRPANLSSCVSCGLCATVCPCNALMEKSMLGQAGFMTGLDEDMLEPMIDMVKKVEPNYQTVFAVSEMEAAMRETRTKKTKTVCTFCGVGCTFEVWTKDRKILKVEPTGEGPVNKFATCVKGKFGWDFVNSEKRITTPLIREGNEFVPASWEDAIHLVATKLREIQAKYGNDSLGFISSSKTTNEENYLMQKLARQVFETNNIDNCSRYCQAPASDGLTRTVGIGADSGTVEDIESAGLVIIVGASPADGHPVLASRIKRAQKTRGQKLIVSDLRKHEMAERSDLFIHPKQGTDFVWLTAVAKYMIDQGWHDEVFMENRISNVADYLAFLEPFTLEYAEKETGLSVETLKKVAQMVHEADGTAVCWGMGVTQNIAGSHTSSAIANLLLVTGNFGRHGAGAYPLRGHNNVQGACDMGSLPNVLPGIQPLGNDEVRARFEEAYGVSISSEPGLKNNEMLDAIEAGTLHSMYVIGEEMAWVDSNSNHVQEILASLDFFVVQDVFLSKTAQFADVVFPAAPSLEKEGTFTNTERRVQRLYEVLEPLGDSKPDWWIIQEVARACGRTDWNYDHPSEIMDEIASLAPFFAGVRYDRMQGFNSLVWPVSADGKDMPLLYEERFNFPDGKAQFSTLPYIAPITFPEEYNLTLNNGRLLEQFHEGNLTDKSKGLDYKLPEVFVEVSHELAKERDLESGSLVRLSSPYGRIKLRAVVTDRMKGNEVYVPMHSVSSETAVNLLTSSAGDVRTKTPAYKQTKVNLTVLEKTGKNPLPDHNPRNRKRFPQNGAEVARKWSREDYQPISKVNCACGGNCGCGGKGRNH
>LR134397.1|VEH61080.1|2624482_2624959_-|Uncharacterized-conserved-protein
MAEPISTIRDTKKTPEELEKERLEQMKADIAEQDSGFIEILETVKLLQESGALEALNSAIKARGDITKTFLNEWRKEPMTNAINNMMISSKLLTDTKPEQTEEMIANLKNAAKKAEESAKNDEIMGMLAMMKALKDPDINRALRYGATFLKEVGQTLK
>LR134397.1|VEH61100.1|2644997_2645693_-|CRISPR-type-II-A/NMEMI-associated-protein-Csn2
MQGLFSWEMMRMNFNFKLLDDPIQIEDSTIFVIEDVRVFANVTRFFYQYEEIEELTIFDAKHQPLKSSELMLITDVLGHDINSAATLKLIYADLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYISLYQVKVLFIEPRKIKGSPQVTLDSDYFLHVENSV
>LR134397.1|VEH61102.1|2645649_2645991_-|CRISPR-associated-endoribonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSIGNSDARLVFLGDDADEF
>LR134397.1|VEH61104.1|2645987_2646854_-|CRISPR-associated-endonuclease-Cas1,-subtype-II/NMENI
MGWRTVVVNSHSKLSYKNQHLVFKSAYQQEMIHLSEIDVLILETTDITLTTMLINCLVAENILILFCDDKRLPIGKVLPFYGRHDSSLQLTKQLEWDAELKAAVWTEIISQKILNQSTYLSMLNYDEKASSLINLHETLAVFDPTNREGHAARIYFNQLFGNDFTREQENDINSGLNYGYTLLLSIFARELVKSGCMTQFGLKHANQFNDFNLASDLMEPFRPLVDQIVYEKRNEDFQVIKRSLFELFTKQFDYNDQHMFLTNIASDYTKKIVKVLNEEREGVPEFRI
>LR134397.1|VEH61105.1|2646854_2650868_-|Uncharacterized-protein-conserved-in-bacteria
MKNMKNPYTIGLDIGTNSVGWAVLTNQYDLVKRKMKVAGNSDKKQIKKNFWGVRLFDDGQTAVDRRMNRTARRRIERRRNRISYLQEIFAVEMANIDANFFCRLNDSFYVDSEKRNSRHPFFATIEEEVAYHKNYRTIYHLREELVNSSEKADLRLVYLALAHIIKYRGNFLIEGALDTKNTSVDGVYEQFIQTYNQVFMSNIEEGTLAKVEENIEVANILAGKFTRREKFERILQLYPGEKSTGMFAQFISLIVGSKGNFQKVFDLIEKTDIECAKDSYEEDLEALLAIIGDEYAELFVAAKNTYNAVVLSSIITVTATETNAKLSASMIERFDAHEKDLGELKAFIKLHLPKQYQEIFNNAAIDGYAGYIDGKTKQVDFYKYLKTILENIEGADYFIAKIEEENFLRKQRTFDNGAIPHQLHLEELEAIIHQQAKYYPFLREDYEKIKSLVTFRIPYFVGPLAKGQSEFAWLTRKADGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKVRYIDDQGKTNYFSGQEKQQIFNDLFKQKRKVKKKDLELFLRNINHIESPTIEGLEDSFNASYATYHDLLKVGMKQEILDNPLNTEMLEDIVKILTVFEDKPMIKEQLQQFSDVLDGGVLKKLERRHYTGWGRLSAKLLVGIREKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTTDKDLQSIVADLAGSPAIKKGILQSLKIVDELVSIMGYPPQTIVVEMARENQTTGKGKNNSKPRYKSLEKAIKEFGSKILKEHPTDNQELKNNRLYLYYLQNGKDMYTGQELDIHNLSNYDIDHIVPQSFITDNSIDNLVLTSSAGNREKGGDVPPLEIVRKRKVFWEKLYQGNLMSKRKFDYLTKAERGGLTDADKARFIHRQLVETRQITKNVANILHQRFNNETDNHGNTMEQVRIVTLKSALVSQFRKQFQLYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFGQKERIIDENGEILWDKKYLETIKKVLDYRQMNIVKKTEIQKGEFSKATIKPKGNSSKLIPRKENWDPMKYGGLDSPNMAYAVIIEHAKGKKKLIFEKKIIRITIMERKMFEKDEEAFLEEKGYRHPKVLTKLPKYTLYECEKGRRRMLASANEAQKGNQLVLSNHLVSLLYHAKNCEASDGKSLKYIEAHRETFSELLAQVSEFATRYTLADANLSKINNLFEQNKEGDIQAIAQSFVDLMAFNAMGAPASFKFFEATIDRKRYTNLKELLSSTIIYQSITGLYESRKRLDD
>LR134397.1|VEH61107.1|2651368_2651848_-|Uncharacterised-protein
MKGLIINKMHSGYFTNMSEVFNLLPEEELNCMWLVSSYECNIYPFEQIPFEEEYVWMKGTELKEILNQEEVMFIWGNFTSYPSNTKLKDILKYPIPFADGNSDLWKKDVHLSNPLSNTELISWDSSIFLALSKNTNLIEGLKDNYPDSEDLSTYNSDID
>LR134397.1|VEH61109.1|2652072_2652465_-|BS10
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR
>LR134397.1|VEH61111.1|2652486_2652924_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>LR134397.1|VEH61113.1|2653118_2653865_-|tRNA-pseudouridine-synthase-A
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>LR134397.1|VEH61115.1|2653870_2654668_-|Energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFVYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLANGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRLLRWRFADTFLLISLAVLSGLLFWLRS
>LR134397.1|VEH61117.1|2654670_2655537_-|Energy-coupling-factor-transporter-ATP-binding-protein-EcfA2
MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLQIGTPREIFAKPDELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELTTEMAPYLAKGGA

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Crispr_ID: LR134397_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134397_4

2747516-2747626

Orphan

Consensus_repeat	Method
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134397_4

>merge|LR134397|4|2747516-2747626|CRISPRCasFinder
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAATGTACTTTATTTTGATTTAGTTCTTCAATATAAATCTGAGCAAAGCGATGATTTAATCCTTCCCAGAAGTTTCAAAA

>LR134397|4|4|2747516-2747626|CRISPRCasFinder
AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	TGTACTTTATTTTGATTTAGTTCTTCAATATAAATCTGAGCAA
AGCGATGATTTAATCCTTCCCAGAAGTTTCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134397.1\|VEH61322.1\|2745662_2747402_-\|DNA-polymerase-III-subunit-tau	unknown	unknown	gnl\|CDD\|235505
LR134397.1\|VEH61314.1\|2742502_2743342_+\|Phosphatase-YidA	unknown	unknown	gnl\|CDD\|319818
LR134397.1\|VEH61326.1\|2748210_2748399_-\|Protein-of-uncharacterised-function-(DUF3188)	unknown	unknown	gnl\|CDD\|371501
LR134397.1\|VEH61330.1\|2748751_2750116_-\|PTS-system-oligo-beta-mannoside-specific-EIIC-component	unknown	unknown	gnl\|CDD\|224372
LR134397.1\|VEH61334.1\|2750746_2751388_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134397.1\|VEH61324.1\|2747728_2748193_-\|Domain-of-uncharacterised-function-(DUF3284)	unknown	unknown	gnl\|CDD\|378692
LR134397.1\|VEH61332.1\|2750558_2750714_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134397.1\|VEH61309.1\|2739441_2740431_+\|PTS-dependent-dihydroxyacetone-kinase,-dihydroxyacetone-binding-subunit-dhaK	unknown	unknown	gnl\|CDD\|237724
LR134397.1\|VEH61311.1\|2740452_2741049_+\|PTS-dependent-dihydroxyacetone-kinase,-ADP-binding-subunit-dhaL	unknown	unknown	gnl\|CDD\|274099
LR134397.1\|VEH61312.1\|2741052_2741427_+\|PTS-dependent-dihydroxyacetone-kinase,-phosphotransferase-subunit-dhaM	unknown	unknown	gnl\|CDD\|184702
LR134397.1\|VEH61340.1\|2753714_2754653_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|226309
LR134397.1\|VEH61336.1\|2751932_2752028_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134397.1\|VEH61317.1\|2744350_2744596_-\|Protein-of-uncharacterised-function-(DUF2508)	unknown	unknown	gnl\|CDD\|378478
LR134397.1\|VEH61320.1\|2745315_2745633_-\|DNA-binding-protein,-YbaB/EbfC-family	unknown	unknown	gnl\|CDD\|234669
LR134397.1\|VEH61338.1\|2752085_2753579_-\|Xylulose-kinase	unknown	unknown	gnl\|CDD\|212659
LR134397.1\|VEH61328.1\|2748395_2748617_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134397.1\|VEH61313.1\|2741532_2742384_+\|MurPQ-operon-repressor	unknown	unknown	gnl\|CDD\|224651
LR134397.1\|VEH61318.1\|2744610_2745207_-\|Recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
LR134397.1\|VEH61342.1\|2754695_2755643_-\|Predicted-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273478
LR134397.1\|VEH61316.1\|2743462_2744305_+\|Glyoxal-reductase	unknown	unknown	gnl\|CDD\|223729

Protein	Function_ID	Function_description	E-value
LR134397.1\|VEH61322.1\|2745662_2747402_-\|DNA-polymerase-III-subunit-tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
LR134397.1\|VEH61314.1\|2742502_2743342_+\|Phosphatase-YidA	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.80739e-85
LR134397.1\|VEH61326.1\|2748210_2748399_-\|Protein-of-uncharacterised-function-(DUF3188)	gnl\|CDD\|371501	pfam11384, DUF3188, Protein of unknown function (DUF3188). This bacterial family of proteins has no known function.	9.45314e-12
LR134397.1\|VEH61330.1\|2748751_2750116_-\|PTS-system-oligo-beta-mannoside-specific-EIIC-component	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	3.47828e-162
LR134397.1\|VEH61324.1\|2747728_2748193_-\|Domain-of-uncharacterised-function-(DUF3284)	gnl\|CDD\|378692	pfam11687, DUF3284, Domain of unknown function (DUF3284). This family of proteins with unknown function appears to be restricted to Firmicutes.	5.35099e-31
LR134397.1\|VEH61342.1\|2754695_2755643_-\|Predicted-outer-membrane-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.13667e-05
LR134397.1\|VEH61309.1\|2739441_2740431_+\|PTS-dependent-dihydroxyacetone-kinase,-dihydroxyacetone-binding-subunit-dhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
LR134397.1\|VEH61311.1\|2740452_2741049_+\|PTS-dependent-dihydroxyacetone-kinase,-ADP-binding-subunit-dhaL	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	1.69543e-82
LR134397.1\|VEH61312.1\|2741052_2741427_+\|PTS-dependent-dihydroxyacetone-kinase,-phosphotransferase-subunit-dhaM	gnl\|CDD\|184702	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional.	7.24481e-50
LR134397.1\|VEH61340.1\|2753714_2754653_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	3.04876e-98
LR134397.1\|VEH61317.1\|2744350_2744596_-\|Protein-of-uncharacterised-function-(DUF2508)	gnl\|CDD\|378478	pfam10704, DUF2508, Protein of unknown function (DUF2508). This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.	2.68189e-15
LR134397.1\|VEH61320.1\|2745315_2745633_-\|DNA-binding-protein,-YbaB/EbfC-family	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.53269e-41
LR134397.1\|VEH61338.1\|2752085_2753579_-\|Xylulose-kinase	gnl\|CDD\|212659	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain.	0
LR134397.1\|VEH61313.1\|2741532_2742384_+\|MurPQ-operon-repressor	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.27215e-62
LR134397.1\|VEH61318.1\|2744610_2745207_-\|Recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	7.77001e-132
LR134397.1\|VEH61316.1\|2743462_2744305_+\|Glyoxal-reductase	gnl\|CDD\|223729	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only].	3.11817e-130

>LR134397.1|VEH61322.1|2745662_2747402_-|DNA-polymerase-III-subunit-tau
MAYQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSVAGGGNVPADAASGSDVSDLKRQMEQMHQEIQTLKKQIASGAGAAPADKPTQNRGGSKKAINNGKQFKAPIGKINHVLGEAKKENLQLIRGCWGELLSMLMASQAALLNDAEPVAASQDTFVLKFKHEIHCQMAMDNPNFVETITSSIARLTQVNYTFIGIPEDQWADVRENFLHSHGSDADAEDGANPEAKKPAEDPFVAEAAKLVGEDLLEIKD
>LR134397.1|VEH61320.1|2745315_2745633_-|DNA-binding-protein,-YbaB/EbfC-family
MRGMGNMQGMMKQMQKMQKEMAKAQADLEAQEFTGTAGGGMVTVKATGKRVITDVVINEEVVDPEDIEMLQDLVLAATNDVLKQIEDTTSQTMGKFTQGLNIPGM
>LR134397.1|VEH61318.1|2744610_2745207_-|Recombination-protein-RecR
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLLKPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV
>LR134397.1|VEH61317.1|2744350_2744596_-|Protein-of-uncharacterised-function-(DUF2508)
MESRSNKFGRKKNKKIGKLHKSYDAYLMELIEVTQENWHKQKVLMRKSFEYDPNLEYEEKKAEARYFYLFKEARTRQLKNK
>LR134397.1|VEH61316.1|2743462_2744305_+|Glyoxal-reductase
MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVGYRLFDTASFYHNEKELGDFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQLDQIDLYLVHWPKQNTFFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPVVDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRGGVLQEQILIDLAEKHGKSPAQIVLRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYVRSEI
>LR134397.1|VEH61314.1|2742502_2743342_+|Phosphatase-YidA
MTTQAIILDIDGTLLNDDKKISPETKKALITAQENGVKLILASGRPTTGMHAYAEQLEMEKHHGLLVSYNGAKVVDCARSEELFNQALTVEEGKAVLEHMKQFKVKVMIDKEDYMYTNDVYDCYVPYRGEEINIIQYESRGGNFKLCEKDDLAAFLDYRLSKILTAGDPAYMQKNYQAMMAPFKDTLNCVFTADFYFEFTAQGIDKAKALDTVLTPMGIHAENIIAFGDGHNDITMVEYAGTGIAMQNAVAELKAAASSVTLSNNEDGIAHVLNSLIPS
>LR134397.1|VEH61313.1|2741532_2742384_+|MurPQ-operon-repressor
MNILIKIRELTNLTNSEKELANYILANPKKTLQFKPKELAAAAFVSAATIYRLINKLGLNGIGELKIEIASSLRETNAEKDINYDYPILESDTPYQIMTNLNQIYKGTIDETLNNADPEELVKIGEKLINAKTIDVYAASANLFFAQNFKFQMQEIGVLVNVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVSSFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE
>LR134397.1|VEH61312.1|2741052_2741427_+|PTS-dependent-dihydroxyacetone-kinase,-phosphotransferase-subunit-dhaM
MTKPYGVVIVSHSKDVAKGVHDIIKEIAPDVSITHAGGTEDGRIGTSFDAVNEAIESNEADKVYTFYDLGSAKMNIETVEEISEKEIILFNAPILEGAYATAAQVQMDEKPEVIAANLKTIEIK
>LR134397.1|VEH61311.1|2740452_2741049_+|PTS-dependent-dihydroxyacetone-kinase,-ADP-binding-subunit-dhaL
MTYDKDWALRWLNDFGERVQENKQLLSDLDQAIGDGDHGINMARGLSELKKVFTEKEPADLKDVFKTAGMTMVSKVGGASGPLYGTAFLNMSKAVDADTIDAVGLTKVIEAGLEGIEKRGKSHAGEKTMIDVWEPVVHALHQEDLTDDVVDAALQKTKDLKATKGRASYLGERSIGHLDPGAYSSALLFHAMLQTEVS
>LR134397.1|VEH61309.1|2739441_2740431_+|PTS-dependent-dihydroxyacetone-kinase,-dihydroxyacetone-binding-subunit-dhaK
MKKILNGTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKIIGAAAEAGASLDELKALGEKVIASVKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKIMPSASLAKQLYERISNESKLLAGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVQVAKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIAW
>LR134397.1|VEH61324.1|2747728_2748193_-|Domain-of-uncharacterised-function-(DUF3284)
MNVTQKLYISQKECFDTLVSSAIYDVKNATGKTLQVRKLEGYKYQRTMSNGALATTKIVKVQPNELYQFETSSRVNTHTTTYTIKSTSETTCEVTYNELIETEKALNKMNNIIVGFMFGFFRKKRVKNLLKSIELSVINESKQKQEKLAAKSEQ
>LR134397.1|VEH61326.1|2748210_2748399_-|Protein-of-uncharacterised-function-(DUF3188)
MKMKIVNALFLISIGLIIIMFSPSYGKDGMASVPLLVTGLAVVLIGCVFIVLKIRKDKKEKN
>LR134397.1|VEH61328.1|2748395_2748617_-|Uncharacterised-protein
MIILNCPMKRDYITELLETYDKDGVTFKKIDEKGMKLTFETNIEDEEKAAKIAKETIKATEIGSVLYFQVSVG
>LR134397.1|VEH61330.1|2748751_2750116_-|PTS-system-oligo-beta-mannoside-specific-EIIC-component
MNGLTAFLEKYFVPVAAKIGSQKHLVALRDAFISTMPITMAGSIAVLLNAFFRDFPTDWGWTGFVEAMQPLIGINGYVYNGTLAIVSIIFAFSLGYNLSKAYEVDRLAGGLVSLAAFVMNLTVTVSLDAVKAAIAASNANFDVATLPKEFAGIYGFFSLSQVNGTGLFTAMIFGFISTIIYAKLMRRNIIIKMPDSVPPAVSKAFAAIIPALVALYVVGIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHGPNVLAPVLESLWGTAQLQNISAAQEGAKLPFEWVRGSFDAYVWMGGSGGTLVLIIALLMFSKRADARTVAKLSLAPGIFNINEPIMFGLPIVLNTIYLIPFLIAPMVMVTIAYFATTLGIVGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFVITANRVGVPEEEMKA
>LR134397.1|VEH61332.1|2750558_2750714_+|Uncharacterised-protein
MAVKRDMPEESKNSKVVKKEHFSIVFPDDIKEPKNASEQKKQDVEKKTDDN
>LR134397.1|VEH61334.1|2750746_2751388_-|Uncharacterised-protein
MQQLKSKKKWLPALIVAVFVGIIVILAIMFGFFQRQEVFDKYEVAYEIDGKLYEVFPISATDIGVDKKSKDKNLYFRVNSYYNIDYLFRLAYKQYEINEPSTNKYYSGLIDYSVADNAYVTQKDVYITNNESYATYDFFDKNGKKIYSYNPEETSNDDYIVRIKPTILQGYEKSDIGSYDDYLNITALFKDKLGMDVNVRIDEDKEMVIFSIK
>LR134397.1|VEH61336.1|2751932_2752028_-|Uncharacterised-protein
MNKKIVWIALTLVGICVVGTIIAAIMSVYLR
>LR134397.1|VEH61338.1|2752085_2753579_-|Xylulose-kinase
MGVDIGTSSTKAVLFNQRGEVIFRQATHYELITDETGKAEESPTEIFDAVLTSIQAVMKNINTEELAGISFSSAMHSLIMVGSNGELLTECITWADGRSSETLEKVKRDNYLFQLYEATGTPIHPMSPFAKICWLKEEKPTLFKRTEKFVDIKSYILYRLFGVWVMDESLASGTGLYNIMEHDWEFEAMEIVKLTPDFLPKVVPETYQLAGVKKEYAELMGIPENLPFIIGGSDGALANIGIQATGQNDVTITVGTSGAVRKLTDQFQIDSRGRTFCYGAGDGYFIAGGAVNNGGKVVEWGLQQFGSEAEISRRDFASFIAKIEEVPPGAAGLLFQPYLLGERAPFWTNDIRGGFVGLTINHTKAHFIRAILEGVAFNLAEVYEVVSAPDDIIYVTGGISAHDAWCKLLADILNREIRVPHTIEGSSLGAAIIGMRSLGILKDLNLKHTMPIKAVYHPSENVLKYAELRLIFKQVTTQLMSSYSQLNSWQKKFDINS
>LR134397.1|VEH61340.1|2753714_2754653_-|Uncharacterized-protein-conserved-in-bacteria
MKKLLSGLIVVLMVSLLGHSFNAEAASYEKIIYDKAVNLKGVVNQSKRNDGINSKMYKTSSSVKYLGSAKKYDKKTLIITREGKTARAKWYYCKLGNTTIGWIDSRAFTNIGKPTIADAVPALWNSKKAIITTKPKSTTATTYFFQKNSAGNWYEVRHFTSHIGKWGFDPKFSEKSSGTPVGVYRTGIAFGQKGNPGTKLTFRAITNRSYWISNSNDKAYNTWQERNSSSSADEKMKIPQYKYGMEVKYNAKRVKGKGSAVFYHVDSPKYNYTLGCVAQSEANTKEVLKFADKNTLIVLGEESRIKTFYGIN
>LR134397.1|VEH61342.1|2754695_2755643_-|Predicted-outer-membrane-protein
MKKFHGLILTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTDTTENIITEEKTEPAEPTKDTTVTPPQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTATLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDNEDGKTTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQITAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134397_2	2.7\|524261\|36\|LR134397\|PILER-CR,CRT	524261-524296	36	LR134397.1	1249549-1249584	1	0.972
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	LR134397.1	1254316-1254345	1	0.967
LR134397_3	3.29\|2644672\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644672-2644701	30	LR134397.1	1253589-1253618	1	0.967
LR134397_3	3.27\|2644539\|31\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644539-2644569	31	LR134397.1	1248064-1248094	2	0.935

1. spacer 2.7|524261|36|LR134397|PILER-CR,CRT matches to position: 1249549-1249584, mismatch: 1, identity: 0.972

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaatagattatgactatcaaattaa	Protospacer
****************.*******************

2. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to position: 1254316-1254345, mismatch: 1, identity: 0.967

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
ggcgaggtaaatcaatataaagatgcatta	Protospacer
**.***************************

3. spacer 3.29|2644672|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to position: 1253589-1253618, mismatch: 1, identity: 0.967

tcgtccactctagtagcatctaggtctagg	CRISPR spacer
tcgtccactctagtagcatctagatctagg	Protospacer
***********************.******

4. spacer 3.27|2644539|31|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to position: 1248064-1248094, mismatch: 2, identity: 0.935

attcgtgaatgccgacaatcgttcatttcca	CRISPR spacer
atccgtgaatgctgacaatcgttcatttcca	Protospacer
**.*********.******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134397_2	2.7\|524261\|36\|LR134397\|PILER-CR,CRT	524261-524296	36	MT500540	Listeria phage LP-HM00113468, complete genome	683-718	0	1.0
LR134397_2	2.7\|524261\|36\|LR134397\|PILER-CR,CRT	524261-524296	36	NC_009812	Listeria phage B025, complete genome	3896-3931	0	1.0
LR134397_2	2.7\|524261\|36\|LR134397\|PILER-CR,CRT	524261-524296	36	KJ094023	Listeria phage LP-101, complete genome	3936-3971	0	1.0
LR134397_2	2.8\|524326\|35\|LR134397\|PILER-CR,CRT	524326-524360	35	DQ003642	Listeria phage A006, complete genome	15712-15746	0	1.0
LR134397_3	3.2\|2642887\|30\|LR134397\|CRISPRCasFinder,CRT	2642887-2642916	30	DQ003637	Listeria phage A500, complete genome	30242-30271	0	1.0
LR134397_3	3.7\|2643218\|30\|LR134397\|CRISPRCasFinder,CRT	2643218-2643247	30	DQ003637	Listeria phage A500, complete genome	30242-30271	0	1.0
LR134397_3	3.14\|2643681\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643681-2643710	30	NC_009813	Listeria phage B054, complete genome	2110-2139	0	1.0
LR134397_3	3.15\|2643747\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643747-2643776	30	KP399678	Listeria phage vB_LmoS_293, complete genome	38838-38867	0	1.0
LR134397_3	3.23\|2644275\|30\|LR134397\|CRISPRCasFinder,CRT	2644275-2644304	30	KJ094022	Listeria phage LP-030-3, complete genome	18116-18145	0	1.0
LR134397_3	3.25\|2644407\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644407-2644436	30	MH299806	Listeria phage LP-KV022, complete genome	20588-20617	0	1.0
LR134397_3	3.25\|2644407\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644407-2644436	30	JB137888	Sequence 7 from Patent WO2012159774	33043-33072	0	1.0
LR134397_3	3.25\|2644407\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644407-2644436	30	KJ094025	Listeria phage LP-032 contig 2, partial genome	22432-22461	0	1.0
LR134397_3	3.25\|2644407\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644407-2644436	30	MN114083	Listeria phage LP-013, complete genome	15094-15123	0	1.0
LR134397_3	3.25\|2644407\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644407-2644436	30	NC_021785	Listeria phage LP-110, complete genome	43434-43463	0	1.0
LR134397_3	3.25\|2644407\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644407-2644436	30	MN128593	Listeria phage LP-031, complete genome	15073-15102	0	1.0
LR134397_3	3.25\|2644407\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644407-2644436	30	MN904502	Listeria phage LP-018, complete genome	15094-15123	0	1.0
LR134397_3	3.25\|2644407\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644407-2644436	30	JX442241	Listeria phage P70, complete genome	20591-20620	0	1.0
LR134397_3	3.25\|2644407\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644407-2644436	30	KJ094020	Listeria phage LP-026, complete genome	64637-64666	0	1.0
LR134397_3	3.25\|2644407\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644407-2644436	30	MN114082	Listeria phage LP-010, complete genome	15095-15124	0	1.0
LR134397_3	3.27\|2644539\|31\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644539-2644569	31	KJ094023	Listeria phage LP-101, complete genome	2451-2481	0	1.0
LR134397_3	3.29\|2644672\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644672-2644701	30	NC_009812	Listeria phage B025, complete genome	7937-7966	0	1.0
LR134397_3	3.29\|2644672\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644672-2644701	30	MT500540	Listeria phage LP-HM00113468, complete genome	36945-36974	0	1.0
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	MH341452	Listeria phage PSU-VKH-LP040, complete genome	37120-37149	0	1.0
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	DQ003637	Listeria phage A500, complete genome	36223-36252	0	1.0
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	KP399677	Listeria phage vB_LmoS_188, complete genome	36255-36284	0	1.0
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	KJ094022	Listeria phage LP-030-3, complete genome	5778-5807	0	1.0
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	KP399678	Listeria phage vB_LmoS_293, complete genome	38539-38568	0	1.0
LR134397_3	3.31\|2644804\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644804-2644833	30	MH341451	Listeria phage PSU-VKH-LP019, complete genome	4931-4960	0	1.0
LR134397_3	3.31\|2644804\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644804-2644833	30	KP399677	Listeria phage vB_LmoS_188, complete genome	4940-4969	0	1.0
LR134397_3	3.31\|2644804\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644804-2644833	30	DQ003642	Listeria phage A006, complete genome	4940-4969	0	1.0
LR134397_3	3.32\|2642887\|29\|LR134397\|PILER-CR	2642887-2642915	29	DQ003637	Listeria phage A500, complete genome	30242-30270	0	1.0
LR134397_2	2.3\|524004\|35\|LR134397\|PILER-CR,CRT	524004-524038	35	MH341453	Listeria phage PSU-VKH-LP041, complete genome	10139-10173	1	0.971
LR134397_2	2.6\|524197\|35\|LR134397\|PILER-CR,CRT	524197-524231	35	NC_021539	Listeria phage LP-030-2, complete genome	18926-18960	1	0.971
LR134397_2	2.6\|524197\|35\|LR134397\|PILER-CR,CRT	524197-524231	35	KJ094023	Listeria phage LP-101, complete genome	22882-22916	1	0.971
LR134397_2	2.7\|524261\|36\|LR134397\|PILER-CR,CRT	524261-524296	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	213463-213498	1	0.972
LR134397_2	2.11\|524004\|36\|LR134397\|CRISPRCasFinder	524004-524039	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	10139-10174	1	0.972
LR134397_2	2.14\|524197\|36\|LR134397\|CRISPRCasFinder	524197-524232	36	NC_021539	Listeria phage LP-030-2, complete genome	18926-18961	1	0.972
LR134397_2	2.14\|524197\|36\|LR134397\|CRISPRCasFinder	524197-524232	36	KJ094023	Listeria phage LP-101, complete genome	22882-22917	1	0.972
LR134397_2	2.15\|524261\|37\|LR134397\|CRISPRCasFinder	524261-524297	37	NC_009812	Listeria phage B025, complete genome	3896-3932	1	0.973
LR134397_2	2.15\|524261\|37\|LR134397\|CRISPRCasFinder	524261-524297	37	KJ094023	Listeria phage LP-101, complete genome	3936-3972	1	0.973
LR134397_2	2.15\|524261\|37\|LR134397\|CRISPRCasFinder	524261-524297	37	MT500540	Listeria phage LP-HM00113468, complete genome	682-718	1	0.973
LR134397_2	2.16\|524326\|36\|LR134397\|CRISPRCasFinder	524326-524361	36	DQ003642	Listeria phage A006, complete genome	15711-15746	1	0.972
LR134397_3	3.2\|2642887\|30\|LR134397\|CRISPRCasFinder,CRT	2642887-2642916	30	KJ094022	Listeria phage LP-030-3, complete genome	39811-39840	1	0.967
LR134397_3	3.7\|2643218\|30\|LR134397\|CRISPRCasFinder,CRT	2643218-2643247	30	KJ094022	Listeria phage LP-030-3, complete genome	39811-39840	1	0.967
LR134397_3	3.14\|2643681\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643681-2643710	30	MH341453	Listeria phage PSU-VKH-LP041, complete genome	2110-2139	1	0.967
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	KJ094026	Listeria phage LP-032 contig 3, partial genome	11155-11184	1	0.967
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	MH299806	Listeria phage LP-KV022, complete genome	51683-51712	1	0.967
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	MN114083	Listeria phage LP-013, complete genome	47204-47233	1	0.967
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	NC_021785	Listeria phage LP-110, complete genome	9401-9430	1	0.967
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	MN128593	Listeria phage LP-031, complete genome	46499-46528	1	0.967
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	NC_021787	Listeria phage LP-037, complete genome	3866-3895	1	0.967
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	MN904502	Listeria phage LP-018, complete genome	46656-46685	1	0.967
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	JX442241	Listeria phage P70, complete genome	53116-53145	1	0.967
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	KJ094020	Listeria phage LP-026, complete genome	30018-30047	1	0.967
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	KJ094021	Listeria phage LP-114, complete genome	37209-37238	1	0.967
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	MN114082	Listeria phage LP-010, complete genome	46489-46518	1	0.967
LR134397_3	3.27\|2644539\|31\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644539-2644569	31	NC_009812	Listeria phage B025, complete genome	2459-2489	1	0.968
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	MT500540	Listeria phage LP-HM00113468, complete genome	36219-36248	1	0.967
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	218230-218259	1	0.967
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	KJ094023	Listeria phage LP-101, complete genome	8703-8732	1	0.967
LR134397_3	3.29\|2644672\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644672-2644701	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	217503-217532	1	0.967
LR134397_3	3.29\|2644672\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644672-2644701	30	KJ094023	Listeria phage LP-101, complete genome	7976-8005	1	0.967
LR134397_3	3.32\|2642887\|29\|LR134397\|PILER-CR	2642887-2642915	29	KJ094022	Listeria phage LP-030-3, complete genome	39811-39839	1	0.966
LR134397_2	2.3\|524004\|35\|LR134397\|PILER-CR,CRT	524004-524038	35	NC_009813	Listeria phage B054, complete genome	10139-10173	2	0.943
LR134397_2	2.6\|524197\|35\|LR134397\|PILER-CR,CRT	524197-524231	35	NC_009812	Listeria phage B025, complete genome	23381-23415	2	0.943
LR134397_2	2.11\|524004\|36\|LR134397\|CRISPRCasFinder	524004-524039	36	NC_009813	Listeria phage B054, complete genome	10139-10174	2	0.944
LR134397_2	2.14\|524197\|36\|LR134397\|CRISPRCasFinder	524197-524232	36	NC_009812	Listeria phage B025, complete genome	23381-23416	2	0.944
LR134397_2	2.15\|524261\|37\|LR134397\|CRISPRCasFinder	524261-524297	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	213463-213499	2	0.946
LR134397_3	3.1\|2642821\|30\|LR134397\|CRISPRCasFinder,CRT	2642821-2642850	30	DQ003637	Listeria phage A500, complete genome	37232-37261	2	0.933
LR134397_3	3.1\|2642821\|30\|LR134397\|CRISPRCasFinder,CRT	2642821-2642850	30	KJ094022	Listeria phage LP-030-3, complete genome	6787-6816	2	0.933
LR134397_3	3.16\|2643813\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643813-2643842	30	KJ094023	Listeria phage LP-101, complete genome	18962-18991	2	0.933
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	JB137888	Sequence 7 from Patent WO2012159774	1635-1664	2	0.933
LR134397_3	3.27\|2644539\|31\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644539-2644569	31	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	211978-212008	2	0.935
LR134397_3	3.26\|2644473\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644473-2644502	30	KJ094027	Listeria phage LP-083-1 contig 1, partial genome	830-859	3	0.9
LR134397_3	3.26\|2644473\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644473-2644502	30	DQ003641	Listeria phage P35, complete genome	583-612	3	0.9
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	MN172529	Listeria phage LP-039, complete genome	1556-1585	3	0.9
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	MN172529	Listeria phage LP-039, complete genome	134582-134611	3	0.9
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	MT178766	Listeria virus P100plus, complete genome	102246-102275	3	0.9
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	MT178767	Listeria virus P200, complete genome	102247-102276	3	0.9
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	DQ004855	Listeria bacteriophage P100, complete genome	98601-98630	3	0.9
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	KJ094033	Listeria phage LP-048, complete genome	4010-4039	3	0.9
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	NC_042048	Listeria phage LMTA-34, complete genome	15567-15596	3	0.9
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	NC_024360	Listeria phage LMSP-25, complete genome	15567-15596	3	0.9
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	1787-1816	3	0.9
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	NC_047872	Listeria phage LMTA-94, complete genome	132046-132075	3	0.9
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	KJ535721	Listeria phage List-36, complete genome	128432-128461	3	0.9
LR134397_2	2.7\|524261\|36\|LR134397\|PILER-CR,CRT	524261-524296	36	JN700520	Staphylococcus phage StB12, complete genome	6832-6867	5	0.861
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	HQ632825	Prochlorococcus phage P-SSM5 genomic sequence	237944-237973	5	0.833
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	MH319731	Marine virus AG-345-E02 Ga0172268_11 genomic sequence	31346-31375	5	0.833
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	AY939844	Prochlorococcus phage P-SSM2, complete genome	101085-101114	5	0.833
LR134397_2	2.15\|524261\|37\|LR134397\|CRISPRCasFinder	524261-524297	37	JN700520	Staphylococcus phage StB12, complete genome	6832-6868	6	0.838
LR134397_3	3.5\|2643085\|31\|LR134397\|CRISPRCasFinder,CRT	2643085-2643115	31	MW057856	Providencia phage PSTCR4, complete genome	27578-27608	6	0.806
LR134397_3	3.10\|2643416\|31\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643416-2643446	31	MW057856	Providencia phage PSTCR4, complete genome	27578-27608	6	0.806
LR134397_3	3.12\|2643549\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643549-2643578	30	MF351863	Synechococcus phage Bellamy, complete genome	141517-141546	6	0.8
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	MN694096	Marine virus AFVG_250M214, complete genome	34457-34486	6	0.8
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	MN694078	Marine virus AFVG_250M213, complete genome	4053-4082	6	0.8
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	MN693931	Marine virus AFVG_250M215, complete genome	4055-4084	6	0.8
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NC_029057	Vibrio phage qdvp001, partial genome	61001-61030	6	0.8
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NC_014660	Acinetobacter phage Ac42, complete genome	66892-66921	6	0.8
LR134397_3	3.35\|2643085\|30\|LR134397\|PILER-CR	2643085-2643114	30	MW057856	Providencia phage PSTCR4, complete genome	27578-27607	6	0.8
LR134397_3	3.1\|2642821\|30\|LR134397\|CRISPRCasFinder,CRT	2642821-2642850	30	KT878766	Staphylococcus phage P1105, complete genome	32141-32170	7	0.767
LR134397_3	3.1\|2642821\|30\|LR134397\|CRISPRCasFinder,CRT	2642821-2642850	30	NC_025460	Staphylococcus phage phiSa119, complete genome	7352-7381	7	0.767
LR134397_3	3.13\|2643615\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643615-2643644	30	NZ_LR134421	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12	42588-42617	7	0.767
LR134397_3	3.14\|2643681\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643681-2643710	30	NC_048855	Phage NBEco002, complete genome	99824-99853	7	0.767
LR134397_3	3.14\|2643681\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643681-2643710	30	NC_017969	Escherichia phage bV_EcoS_AKFV33, complete genome	99958-99987	7	0.767
LR134397_3	3.14\|2643681\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643681-2643710	30	NC_024139	Escherichia phage vB_EcoS_FFH1, complete genome	99882-99911	7	0.767
LR134397_3	3.14\|2643681\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643681-2643710	30	MN022787	Salmonella virus VSe12, complete genome	101179-101208	7	0.767
LR134397_3	3.15\|2643747\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643747-2643776	30	MT521992	Rhodococcus phage NiceHouse, complete genome	18590-18619	7	0.767
LR134397_3	3.18\|2643945\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2643945-2643974	30	NZ_CP045385	Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence	374312-374341	7	0.767
LR134397_3	3.24\|2644341\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644341-2644370	30	NZ_CP029234	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence	189763-189792	7	0.767
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NC_015223	Nitrosomonas sp. AL212 plasmid pNAL21201, complete sequence	3346-3375	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP041263	Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R2	64871-64900	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_LR135332	Enterococcus faecium isolate E7471 plasmid 2	55763-55792	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_LR135332	Enterococcus faecium isolate E7471 plasmid 2	106757-106786	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_LR135245	Enterococcus faecium isolate E6988 plasmid 3	65650-65679	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_LR135245	Enterococcus faecium isolate E6988 plasmid 3	112906-112935	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_LR135256	Enterococcus faecium isolate E7098 plasmid 3	72035-72064	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP038997	Enterococcus faecium strain SRR24 plasmid pSRR24	81179-81208	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP019989	Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence	68971-69000	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_LR134107	Enterococcus faecium isolate E6043 plasmid 3	4258-4287	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_LR134107	Enterococcus faecium isolate E6043 plasmid 3	51514-51543	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP045014	Enterococcus faecium strain LAC7.2 plasmid pII, complete sequence	57284-57313	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	MN831413	Enterococcus faecium strain M17/0314 plasmid pM17/0314, complete sequence	79900-79929	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP035656	Enterococcus faecium strain UAMSEF_09 plasmid unnamed2	56176-56205	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP039730	Enterococcus faecium strain ZY2 plasmid pZY2	71282-71311	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP019971	Enterococcus faecium isolate 2014-VREF-114 plasmid p114-1 sequence	81700-81729	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP040238	Enterococcus faecium strain VB3025 plasmid unnamed2, complete sequence	119199-119228	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP012462	Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p2	53039-53068	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_MG640601	Enterococcus faecium strain SRR6 plasmid pEMSRR6, complete sequence	77050-77079	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	743688-743717	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_LT598665	Enterococcus faecium isolate Ef_aus00233 plasmid 3	60226-60255	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP025427	Enterococcus faecium strain SC4 plasmid p2, complete sequence	34475-34504	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP027511	Enterococcus faecium strain AUSMDU00004055 plasmid unnamed5, complete sequence	32645-32674	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP044266	Enterococcus faecium strain V1836 plasmid pHVH-V1836-2, complete sequence	69553-69582	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NC_010371	Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence	179399-179428	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP040742	Enterococcus faecium strain VRE1 plasmid pVRE1-VanA, complete sequence	22676-22705	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_AP022343	Enterococcus faecium strain KUHS13 plasmid pELF2	39056-39085	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP041272	Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S2	24902-24931	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP019994	Enterococcus faecium isolate 2014-VREF-268 plasmid p268-2	36355-36384	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP035662	Enterococcus faecium strain UAMSEF_20 plasmid unnamed2	25071-25100	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NC_019009	Staphylococcus aureus plasmid SAP078A, complete sequence	34587-34616	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP026065	Staphylococcus aureus strain FDAARGOS_19 plasmid unnamed	14932-14961	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NC_014535	Gloeothece verrucosa PCC 7822 plasmid Cy782206, complete sequence	2899-2928	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP010104	Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence	22583-22612	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP010104	Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence	25706-25735	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	MT028491	Ochrobactrum phage vB_OspM_OC, complete genome	202813-202842	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	MN694607	Marine virus AFVG_250M465, complete genome	20845-20874	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	MN508817	Yersinia phage JC221, partial genome	44268-44297	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NC_018965	Staphylococcus aureus plasmid SAP077A, complete sequence	14324-14353	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NC_013340	Staphylococcus aureus plasmid SAP076A, complete sequence	9218-9247	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP028469	Staphylococcus aureus strain IT1-S plasmid pIT1-S, complete sequence	8210-8239	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	MN694237	Marine virus AFVG_250M414, complete genome	17908-17937	7	0.767
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	MN694635	Marine virus AFVG_250M372, complete genome	17897-17926	7	0.767
LR134397_3	3.31\|2644804\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644804-2644833	30	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	575781-575810	7	0.767
LR134397_3	3.31\|2644804\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644804-2644833	30	NZ_CP039899	Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence	322320-322349	7	0.767
LR134397_3	3.31\|2644804\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644804-2644833	30	NZ_CP039890	Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence	322320-322349	7	0.767
LR134397_2	2.7\|524261\|36\|LR134397\|PILER-CR,CRT	524261-524296	36	MW084976	Bacillus phage Kirov, complete genome	27565-27600	8	0.778
LR134397_3	3.1\|2642821\|30\|LR134397\|CRISPRCasFinder,CRT	2642821-2642850	30	JN638751	Bacillus phage G, complete genome	221970-221999	8	0.733
LR134397_3	3.23\|2644275\|30\|LR134397\|CRISPRCasFinder,CRT	2644275-2644304	30	NZ_CP013462	Burkholderia ubonensis strain MSMB1471WGS plasmid pMSMB1471, complete sequence	10086-10115	8	0.733
LR134397_3	3.26\|2644473\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644473-2644502	30	AP018399	Xanthomonas phage XacN1 DNA, complete genome	59853-59882	8	0.733
LR134397_3	3.26\|2644473\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644473-2644502	30	AP018399	Xanthomonas phage XacN1 DNA, complete genome	378648-378677	8	0.733
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	139099-139128	8	0.733
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	MN692983	Marine virus AFVG_117M11, complete genome	3682-3711	8	0.733
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	96171-96200	8	0.733
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP035115	Lactobacillus plantarum strain SRCM103295 plasmid unnamed2	39839-39868	8	0.733
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP035567	Lactobacillus plantarum strain SRCM103300 plasmid unnamed1	73108-73137	8	0.733
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NC_021519	Lactobacillus plantarum 16 plasmid Lp16H, complete sequence	8495-8524	8	0.733
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP046662	Lactobacillus plantarum strain 83-18 plasmid p83-18.2, complete sequence	14284-14313	8	0.733
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP050809	Lactobacillus plantarum strain SPC-SNU 72-2 plasmid pLBP443, complete sequence	3751-3780	8	0.733
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP011490	Staphylococcus pseudintermedius strain 222 plasmid p222, complete sequence	5522-5551	8	0.733
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP035176	Lactobacillus plantarum strain SRCM103426 plasmid unnamed2	15623-15652	8	0.733
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP025417	Lactobacillus plantarum strain X7021 plasmid unnamed5, complete sequence	18402-18431	8	0.733
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP046661	Lactobacillus plantarum strain 83-18 plasmid p83-18.1, complete sequence	35311-35340	8	0.733
LR134397_3	3.31\|2644804\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644804-2644833	30	NZ_CP040759	Paracoccus sp. 2251 plasmid unnamed8, complete sequence	57863-57892	8	0.733
LR134397_2	2.15\|524261\|37\|LR134397\|CRISPRCasFinder	524261-524297	37	MW084976	Bacillus phage Kirov, complete genome	27565-27601	9	0.757
LR134397_3	3.23\|2644275\|30\|LR134397\|CRISPRCasFinder,CRT	2644275-2644304	30	MW057858	Providencia phage PSTCR6, complete genome	157-186	9	0.7
LR134397_3	3.26\|2644473\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644473-2644502	30	JN106164	Uncultured bacterium plasmid pAKD1, complete sequence	27224-27253	9	0.7
LR134397_3	3.27\|2644539\|31\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644539-2644569	31	CP045557	Citrobacter sp. S39 plasmid pS39-2, complete sequence	86914-86944	9	0.71
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	MF547663	Clostridioides phage LIBA2945, complete genome	113801-113830	9	0.7
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	CP011970	Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence	112607-112636	9	0.7
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	LN681537	Clostridium phage phiCD211, complete genome	121469-121498	9	0.7
LR134397_3	3.30\|2644738\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644738-2644767	30	NZ_CP020426	Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence	9364-9393	9	0.7
LR134397_3	3.19\|2644011\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644011-2644040	30	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	772909-772938	10	0.667
LR134397_3	3.19\|2644011\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644011-2644040	30	NZ_LR594667	Variovorax sp. SRS16 plasmid 2	65251-65280	10	0.667
LR134397_3	3.19\|2644011\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644011-2644040	30	NZ_LR594690	Variovorax sp. WDL1 plasmid 2	65071-65100	10	0.667
LR134397_3	3.19\|2644011\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644011-2644040	30	NZ_LR594672	Variovorax sp. PBL-E5 plasmid 2	65251-65280	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_KY940428	UNVERIFIED: Bacillus sp. (in: Bacteria) strain PUMK-07 plasmid pMK-07, complete sequence	178471-178500	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_CP016317	Bacillus cereus strain M3 plasmid pBCM301, complete sequence	169285-169314	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	107884-107913	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NC_011655	Bacillus cereus AH187 plasmid pAH187_270, complete sequence	159582-159611	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NC_010924	Bacillus cereus strain AH187 plasmid pCER270, complete sequence	215991-216020	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	CP045776	Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence	208416-208445	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	90843-90872	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NC_016792	Bacillus cereus NC7401 plasmid pNCcld, complete sequence	214860-214889	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	30806-30835	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_CP016361	Bacillus cereus strain M13 plasmid pBCM1301, complete sequence	3748-3777	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_CP009595	Bacillus cereus strain 3a plasmid pBFC_3, complete sequence	131247-131276	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NC_011973	Bacillus cereus Q1 plasmid pBc239, complete sequence	171457-171486	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_CP047086	Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence	3747-3776	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_CP009606	Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence	309960-309989	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NC_011777	Bacillus cereus AH820 plasmid pAH820_272, complete sequence	160923-160952	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_CP053994	Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence	71253-71282	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_CP033789	Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence	272077-272106	10	0.667
LR134397_3	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	NZ_CP053992	Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence	54269-54298	10	0.667
LR134397_2	2.8\|524326\|35\|LR134397\|PILER-CR,CRT	524326-524360	35	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	130632-130666	11	0.686
LR134397_2	2.8\|524326\|35\|LR134397\|PILER-CR,CRT	524326-524360	35	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	17622-17656	11	0.686
LR134397_2	2.8\|524326\|35\|LR134397\|PILER-CR,CRT	524326-524360	35	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	31860-31894	11	0.686
LR134397_2	2.8\|524326\|35\|LR134397\|PILER-CR,CRT	524326-524360	35	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	338888-338922	11	0.686

1. spacer 2.7|524261|36|LR134397|PILER-CR,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

2. spacer 2.7|524261|36|LR134397|PILER-CR,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

3. spacer 2.7|524261|36|LR134397|PILER-CR,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaa	Protospacer
************************************

4. spacer 2.8|524326|35|LR134397|PILER-CR,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
tttgttgaatcaacggatatagattttacaatttc	Protospacer
***********************************

5. spacer 3.2|2642887|30|LR134397|CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 0, identity: 1.0

agcttgcgtttagaggacgaagaaaaacta	CRISPR spacer
agcttgcgtttagaggacgaagaaaaacta	Protospacer
******************************

6. spacer 3.7|2643218|30|LR134397|CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 0, identity: 1.0

agcttgcgtttagaggacgaagaaaaacta	CRISPR spacer
agcttgcgtttagaggacgaagaaaaacta	Protospacer
******************************

7. spacer 3.14|2643681|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 0, identity: 1.0

gtgtttctttcccaccttctggttcaacgc	CRISPR spacer
gtgtttctttcccaccttctggttcaacgc	Protospacer
******************************

8. spacer 3.15|2643747|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

gctgcctcgctttactcttcgttatctcca	CRISPR spacer
gctgcctcgctttactcttcgttatctcca	Protospacer
******************************

9. spacer 3.23|2644275|30|LR134397|CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

gcgcttcccatcgatttaaacgcatttaca	CRISPR spacer
gcgcttcccatcgatttaaacgcatttaca	Protospacer
******************************

10. spacer 3.25|2644407|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 0, identity: 1.0

gccttgcttgacccaactagtgacttcttc	CRISPR spacer
gccttgcttgacccaactagtgacttcttc	Protospacer
******************************

11. spacer 3.25|2644407|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 0, identity: 1.0

gccttgcttgacccaactagtgacttcttc	CRISPR spacer
gccttgcttgacccaactagtgacttcttc	Protospacer
******************************

12. spacer 3.25|2644407|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KJ094025 (Listeria phage LP-032 contig 2, partial genome) position: , mismatch: 0, identity: 1.0

gccttgcttgacccaactagtgacttcttc	CRISPR spacer
gccttgcttgacccaactagtgacttcttc	Protospacer
******************************

13. spacer 3.25|2644407|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 0, identity: 1.0

gccttgcttgacccaactagtgacttcttc	CRISPR spacer
gccttgcttgacccaactagtgacttcttc	Protospacer
******************************

14. spacer 3.25|2644407|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 0, identity: 1.0

gccttgcttgacccaactagtgacttcttc	CRISPR spacer
gccttgcttgacccaactagtgacttcttc	Protospacer
******************************

15. spacer 3.25|2644407|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 0, identity: 1.0

gccttgcttgacccaactagtgacttcttc	CRISPR spacer
gccttgcttgacccaactagtgacttcttc	Protospacer
******************************

16. spacer 3.25|2644407|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 0, identity: 1.0

gccttgcttgacccaactagtgacttcttc	CRISPR spacer
gccttgcttgacccaactagtgacttcttc	Protospacer
******************************

17. spacer 3.25|2644407|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 0, identity: 1.0

gccttgcttgacccaactagtgacttcttc	CRISPR spacer
gccttgcttgacccaactagtgacttcttc	Protospacer
******************************

18. spacer 3.25|2644407|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 0, identity: 1.0

gccttgcttgacccaactagtgacttcttc	CRISPR spacer
gccttgcttgacccaactagtgacttcttc	Protospacer
******************************

19. spacer 3.25|2644407|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 0, identity: 1.0

gccttgcttgacccaactagtgacttcttc	CRISPR spacer
gccttgcttgacccaactagtgacttcttc	Protospacer
******************************

20. spacer 3.27|2644539|31|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

attcgtgaatgccgacaatcgttcatttcca	CRISPR spacer
attcgtgaatgccgacaatcgttcatttcca	Protospacer
*******************************

21. spacer 3.29|2644672|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 0, identity: 1.0

tcgtccactctagtagcatctaggtctagg	CRISPR spacer
tcgtccactctagtagcatctaggtctagg	Protospacer
******************************

22. spacer 3.29|2644672|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

tcgtccactctagtagcatctaggtctagg	CRISPR spacer
tcgtccactctagtagcatctaggtctagg	Protospacer
******************************

23. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 0, identity: 1.0

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
gtcatttttaatagtttcaattgctgataa	Protospacer
******************************

24. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 0, identity: 1.0

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
gtcatttttaatagtttcaattgctgataa	Protospacer
******************************

25. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 0, identity: 1.0

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
gtcatttttaatagtttcaattgctgataa	Protospacer
******************************

26. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 0, identity: 1.0

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
gtcatttttaatagtttcaattgctgataa	Protospacer
******************************

27. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 0, identity: 1.0

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
gtcatttttaatagtttcaattgctgataa	Protospacer
******************************

28. spacer 3.31|2644804|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 0, identity: 1.0

tcaaaagcgcgcatgaggaagaaatcacga	CRISPR spacer
tcaaaagcgcgcatgaggaagaaatcacga	Protospacer
******************************

29. spacer 3.31|2644804|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 0, identity: 1.0

tcaaaagcgcgcatgaggaagaaatcacga	CRISPR spacer
tcaaaagcgcgcatgaggaagaaatcacga	Protospacer
******************************

30. spacer 3.31|2644804|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

tcaaaagcgcgcatgaggaagaaatcacga	CRISPR spacer
tcaaaagcgcgcatgaggaagaaatcacga	Protospacer
******************************

31. spacer 3.32|2642887|29|LR134397|PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 0, identity: 1.0

agcttgcgtttagaggacgaagaaaaact	CRISPR spacer
agcttgcgtttagaggacgaagaaaaact	Protospacer
*****************************

32. spacer 2.3|524004|35|LR134397|PILER-CR,CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.971

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacagcgatgggttacaa	Protospacer
*****************.*****************

33. spacer 2.6|524197|35|LR134397|PILER-CR,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.971

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctat	Protospacer
******************* ***************

34. spacer 2.6|524197|35|LR134397|PILER-CR,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.971

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctat	Protospacer
******************* ***************

35. spacer 2.7|524261|36|LR134397|PILER-CR,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.972

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaatagattatgactatcaaattaa	Protospacer
****************.*******************

36. spacer 2.11|524004|36|LR134397|CRISPRCasFinder matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.972

gcgatttttgtcaaagggacagcgatgggttacaag	CRISPR spacer
gcgatttttgtcaaaggaacagcgatgggttacaag	Protospacer
*****************.******************

37. spacer 2.14|524197|36|LR134397|CRISPRCasFinder matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctata	Protospacer
******************* ****************

38. spacer 2.14|524197|36|LR134397|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactgtctcaactcctttctata	Protospacer
******************* ****************

39. spacer 2.15|524261|37|LR134397|CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.973

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaaa	Protospacer
************************************.

40. spacer 2.15|524261|37|LR134397|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaaa	Protospacer
************************************.

41. spacer 2.15|524261|37|LR134397|CRISPRCasFinder matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 1, identity: 0.973

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaataaattatgactatcaaattaaa	Protospacer
************************************.

42. spacer 2.16|524326|36|LR134397|CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

tttgttgaatcaacggatatagattttacaatttcg	CRISPR spacer
tttgttgaatcaacggatatagattttacaatttct	Protospacer
***********************************

43. spacer 3.2|2642887|30|LR134397|CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 1, identity: 0.967

agcttgcgtttagaggacgaagaaaaacta	CRISPR spacer
agcttgcgtttggaggacgaagaaaaacta	Protospacer
***********.******************

44. spacer 3.7|2643218|30|LR134397|CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 1, identity: 0.967

agcttgcgtttagaggacgaagaaaaacta	CRISPR spacer
agcttgcgtttggaggacgaagaaaaacta	Protospacer
***********.******************

45. spacer 3.14|2643681|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.967

gtgtttctttcccaccttctggttcaacgc	CRISPR spacer
gtgtttctttcccaccttccggttcaacgc	Protospacer
*******************.**********

46. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 1, identity: 0.967

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttggaggaactgaatttactggcacta	Protospacer
* ****************************

47. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 1, identity: 0.967

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttggaggaactgaatttactggcacta	Protospacer
* ****************************

48. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 1, identity: 0.967

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttggaggaactgaatttactggcacta	Protospacer
* ****************************

49. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 1, identity: 0.967

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttggaggaactgaatttactggcacta	Protospacer
* ****************************

50. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 1, identity: 0.967

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttggaggaactgaatttactggcacta	Protospacer
* ****************************

51. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 1, identity: 0.967

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttggaggaactgaatttactggcacta	Protospacer
* ****************************

52. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 1, identity: 0.967

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttggaggaactgaatttactggcacta	Protospacer
* ****************************

53. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.967

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttggaggaactgaatttactggcacta	Protospacer
* ****************************

54. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 1, identity: 0.967

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttggaggaactgaatttactggcacta	Protospacer
* ****************************

55. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 1, identity: 0.967

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttggaggaactgaatttactggcacta	Protospacer
* ****************************

56. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 1, identity: 0.967

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttggaggaactgaatttactggcacta	Protospacer
* ****************************

57. spacer 3.27|2644539|31|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.968

attcgtgaatgccgacaatcgttcatttcca	CRISPR spacer
atccgtgaatgccgacaatcgttcatttcca	Protospacer
**.****************************

58. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 1, identity: 0.967

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
ggcgaggtaaatcaatataaagatgcatta	Protospacer
**.***************************

59. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.967

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
ggcgaggtaaatcaatataaagatgcatta	Protospacer
**.***************************

60. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.967

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
ggcgaggtaaatcaatataaagatgcatta	Protospacer
**.***************************

61. spacer 3.29|2644672|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.967

tcgtccactctagtagcatctaggtctagg	CRISPR spacer
tcgtccactctagtagcatctagatctagg	Protospacer
***********************.******

62. spacer 3.29|2644672|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.967

tcgtccactctagtagcatctaggtctagg	CRISPR spacer
tcgtccactctagtagcatctagatctagg	Protospacer
***********************.******

63. spacer 3.32|2642887|29|LR134397|PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 1, identity: 0.966

agcttgcgtttagaggacgaagaaaaact	CRISPR spacer
agcttgcgtttggaggacgaagaaaaact	Protospacer
***********.*****************

64. spacer 2.3|524004|35|LR134397|PILER-CR,CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.943

gcgatttttgtcaaagggacagcgatgggttacaa	CRISPR spacer
gcgatttttgtcaaaggaacggcgatgggttacaa	Protospacer
*****************.**.**************

65. spacer 2.6|524197|35|LR134397|PILER-CR,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.943

ctaaaacatccttcactgtatcaactcctttctat	CRISPR spacer
ctaaaacatccttcactatctcaactcctttctat	Protospacer
*****************.* ***************

66. spacer 2.11|524004|36|LR134397|CRISPRCasFinder matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.944

gcgatttttgtcaaagggacagcgatgggttacaag	CRISPR spacer
gcgatttttgtcaaaggaacggcgatgggttacaag	Protospacer
*****************.**.***************

67. spacer 2.14|524197|36|LR134397|CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.944

ctaaaacatccttcactgtatcaactcctttctata	CRISPR spacer
ctaaaacatccttcactatctcaactcctttctata	Protospacer
*****************.* ****************

68. spacer 2.15|524261|37|LR134397|CRISPRCasFinder matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.946

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
aaaataggaggaaatagattatgactatcaaattaaa	Protospacer
****************.*******************.

69. spacer 3.1|2642821|30|LR134397|CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.933

caagttaaagatatcaactacattcagaca	CRISPR spacer
caagttgaagatattaactacattcagaca	Protospacer
******.*******.***************

70. spacer 3.1|2642821|30|LR134397|CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.933

caagttaaagatatcaactacattcagaca	CRISPR spacer
caagttgaagatattaactacattcagaca	Protospacer
******.*******.***************

71. spacer 3.16|2643813|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.933

aacacaccgagcaatagaaatacactgtta	CRISPR spacer
agcacaccgagcaatagaaatatactgtta	Protospacer
*.********************.*******

72. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 2, identity: 0.933

cctttggaggaactgaatttactggcacta	CRISPR spacer
catttgggggaactgaatttactggcacta	Protospacer
* *****.**********************

73. spacer 3.27|2644539|31|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.935

attcgtgaatgccgacaatcgttcatttcca	CRISPR spacer
atccgtgaatgctgacaatcgttcatttcca	Protospacer
**.*********.******************

74. spacer 3.26|2644473|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to KJ094027 (Listeria phage LP-083-1 contig 1, partial genome) position: , mismatch: 3, identity: 0.9

ttgttgtcgtcgggtagttcgcccatatct	CRISPR spacer
ctattgtcgtcgggtagttcacccatatct	Protospacer
.*.*****************.*********

75. spacer 3.26|2644473|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 3, identity: 0.9

ttgttgtcgtcgggtagttcgcccatatct	CRISPR spacer
ctattgtcgtcgggtagttcacccatatct	Protospacer
.*.*****************.*********

76. spacer 3.35|2643085|30|LR134397|PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 3, identity: 0.9

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttcagactatgtttttaataaagggatgtt	Protospacer
***************.**.*********.*

77. spacer 3.35|2643085|30|LR134397|PILER-CR matches to MN172529 (Listeria phage LP-039, complete genome) position: , mismatch: 3, identity: 0.9

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttcagactatgtttttaataaagggatgtt	Protospacer
***************.**.*********.*

78. spacer 3.35|2643085|30|LR134397|PILER-CR matches to MT178766 (Listeria virus P100plus, complete genome) position: , mismatch: 3, identity: 0.9

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttcagactatgtatttaacaaagggatgtt	Protospacer
************ **.************.*

79. spacer 3.35|2643085|30|LR134397|PILER-CR matches to MT178767 (Listeria virus P200, complete genome) position: , mismatch: 3, identity: 0.9

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttcagactatgtatttaacaaagggatgtt	Protospacer
************ **.************.*

80. spacer 3.35|2643085|30|LR134397|PILER-CR matches to DQ004855 (Listeria bacteriophage P100, complete genome) position: , mismatch: 3, identity: 0.9

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttcagactatgtatttaacaaagggatgtt	Protospacer
************ **.************.*

81. spacer 3.35|2643085|30|LR134397|PILER-CR matches to KJ094033 (Listeria phage LP-048, complete genome) position: , mismatch: 3, identity: 0.9

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttcagactatgtttttaataaagggatgtt	Protospacer
***************.**.*********.*

82. spacer 3.35|2643085|30|LR134397|PILER-CR matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 3, identity: 0.9

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttcagactatgtatttaacaaagggatgtt	Protospacer
************ **.************.*

83. spacer 3.35|2643085|30|LR134397|PILER-CR matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 3, identity: 0.9

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttcagactatgtatttaacaaagggatgtt	Protospacer
************ **.************.*

84. spacer 3.35|2643085|30|LR134397|PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 3, identity: 0.9

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttcagactatgtatttaacaaagggatgtt	Protospacer
************ **.************.*

85. spacer 3.35|2643085|30|LR134397|PILER-CR matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 3, identity: 0.9

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttcagactatgtatttaacaaagggatgtt	Protospacer
************ **.************.*

86. spacer 3.35|2643085|30|LR134397|PILER-CR matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 3, identity: 0.9

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttcagactatgtatttaacaaagggatgtt	Protospacer
************ **.************.*

87. spacer 2.7|524261|36|LR134397|PILER-CR,CRT matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 5, identity: 0.861

aaaataggaggaaataaattatgact-atcaaattaa	CRISPR spacer
taaataggaggaagtaaataatgactaatcaaacta-	Protospacer
 ************.***** ****** ******.**

88. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to HQ632825 (Prochlorococcus phage P-SSM5 genomic sequence) position: , mismatch: 5, identity: 0.833

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
ggtggagtaaatcaatataaagatagaata	Protospacer
****..******************. * **

89. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MH319731 (Marine virus AG-345-E02 Ga0172268_11 genomic sequence) position: , mismatch: 5, identity: 0.833

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
ggtggagtaaatcaatataaagatagaata	Protospacer
****..******************. * **

90. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to AY939844 (Prochlorococcus phage P-SSM2, complete genome) position: , mismatch: 5, identity: 0.833

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
ggtggagtaaatcaatataaagatagaata	Protospacer
****..******************. * **

91. spacer 2.15|524261|37|LR134397|CRISPRCasFinder matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 6, identity: 0.838

aaaataggaggaaataaattatgact-atcaaattaag	CRISPR spacer
taaataggaggaagtaaataatgactaatcaaactat-	Protospacer
 ************.***** ****** ******.**

92. spacer 3.5|2643085|31|LR134397|CRISPRCasFinder,CRT matches to MW057856 (Providencia phage PSTCR4, complete genome) position: , mismatch: 6, identity: 0.806

ttcagactatgttttcaacaaagggatgcta	CRISPR spacer
ttctacctatgttttctacaaaaggatgcaa	Protospacer
*** . ********** *****.****** *

93. spacer 3.10|2643416|31|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MW057856 (Providencia phage PSTCR4, complete genome) position: , mismatch: 6, identity: 0.806

ttcagactatgttttcaacaaagggatgcta	CRISPR spacer
ttctacctatgttttctacaaaaggatgcaa	Protospacer
*** . ********** *****.****** *

94. spacer 3.12|2643549|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MF351863 (Synechococcus phage Bellamy, complete genome) position: , mismatch: 6, identity: 0.8

tcatagtctgttggaacatctgc---atgaact	CRISPR spacer
tcatagtctgttggaacatcttccaagtaa---	Protospacer
********************* *   .*.*

95. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN694096 (Marine virus AFVG_250M214, complete genome) position: , mismatch: 6, identity: 0.8

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
gcaaatgaaaatgaatataaagatgcatta	Protospacer
*  .* * **** *****************

96. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN694078 (Marine virus AFVG_250M213, complete genome) position: , mismatch: 6, identity: 0.8

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
gcaaatgaaaatgaatataaagatgcatta	Protospacer
*  .* * **** *****************

97. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN693931 (Marine virus AFVG_250M215, complete genome) position: , mismatch: 6, identity: 0.8

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
gcaaatgaaaatgaatataaagatgcatta	Protospacer
*  .* * **** *****************

98. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_029057 (Vibrio phage qdvp001, partial genome) position: , mismatch: 6, identity: 0.8

ggtgaggtaaatcaatataaaga-tgcatta	CRISPR spacer
gcagatgtaaatcaatataaagattgtgtt-	Protospacer
*  ** ***************** **..**

99. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_014660 (Acinetobacter phage Ac42, complete genome) position: , mismatch: 6, identity: 0.8

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
ctcctagttaataattacaattgctgataa	Protospacer
 ** *  ******.** *************

100. spacer 3.35|2643085|30|LR134397|PILER-CR matches to MW057856 (Providencia phage PSTCR4, complete genome) position: , mismatch: 6, identity: 0.8

ttcagactatgttttcaacaaagggatgct	CRISPR spacer
ttctacctatgttttctacaaaaggatgca	Protospacer
*** . ********** *****.******

101. spacer 3.1|2642821|30|LR134397|CRISPRCasFinder,CRT matches to KT878766 (Staphylococcus phage P1105, complete genome) position: , mismatch: 7, identity: 0.767

caagttaaagatatcaactacattcagaca	CRISPR spacer
caagttaaagatatgaacaacataccaatt	Protospacer
************** *** **** * .*.

102. spacer 3.1|2642821|30|LR134397|CRISPRCasFinder,CRT matches to NC_025460 (Staphylococcus phage phiSa119, complete genome) position: , mismatch: 7, identity: 0.767

caagttaaagatatcaactacattcagaca	CRISPR spacer
caagttaaagatatgaacaacataccaatt	Protospacer
************** *** **** * .*.

103. spacer 3.13|2643615|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134421 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12) position: , mismatch: 7, identity: 0.767

ttcccagccgtaatagatactaaattacca	CRISPR spacer
tcaattgccgaaatagttactaaattacca	Protospacer
*.  . **** ***** *************

104. spacer 3.14|2643681|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_048855 (Phage NBEco002, complete genome) position: , mismatch: 7, identity: 0.767

gtgtttctttcccaccttctggttcaacgc	CRISPR spacer
aagtagcttttccagcttctggttcaacga	Protospacer
. **  ****.*** **************

105. spacer 3.14|2643681|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_017969 (Escherichia phage bV_EcoS_AKFV33, complete genome) position: , mismatch: 7, identity: 0.767

gtgtttctttcccaccttctggttcaacgc	CRISPR spacer
aagtagcttttccagcttctggttcaacga	Protospacer
. **  ****.*** **************

106. spacer 3.14|2643681|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_024139 (Escherichia phage vB_EcoS_FFH1, complete genome) position: , mismatch: 7, identity: 0.767

gtgtttctttcccaccttctggttcaacgc	CRISPR spacer
aagtagcttttccagcttctggttcaacga	Protospacer
. **  ****.*** **************

107. spacer 3.14|2643681|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN022787 (Salmonella virus VSe12, complete genome) position: , mismatch: 7, identity: 0.767

gtgtttctttcccaccttctggttcaacgc	CRISPR spacer
aagtagcttttccagcttctggttcaacga	Protospacer
. **  ****.*** **************

108. spacer 3.15|2643747|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MT521992 (Rhodococcus phage NiceHouse, complete genome) position: , mismatch: 7, identity: 0.767

gctgcctcgctttactcttcgttatctcca	CRISPR spacer
aatacctctctttactcttctttatcttta	Protospacer
. *.**** *********** ******..*

109. spacer 3.18|2643945|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045385 (Ruegeria sp. THAF33 plasmid pTHAF33_a, complete sequence) position: , mismatch: 7, identity: 0.767

gaaaaagttgtcgatcttacaaaaaaattc	CRISPR spacer
aaaaaagatgtcgatcttaccaaaatctct	Protospacer
.****** ************ ****  *..

110. spacer 3.24|2644341|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029234 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence) position: , mismatch: 7, identity: 0.767

cctttggaggaactgaatttactggcacta	CRISPR spacer
tcgacgcaggaacagaatttgctggcacta	Protospacer
.*  .* ****** ******.*********

111. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_015223 (Nitrosomonas sp. AL212 plasmid pNAL21201, complete sequence) position: , mismatch: 7, identity: 0.767

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
cgttaggtaaatcaatataaaggtttcgta	Protospacer
 ** ******************.* .  **

112. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041263 (Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R2) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

113. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR135332 (Enterococcus faecium isolate E7471 plasmid 2) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

114. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR135332 (Enterococcus faecium isolate E7471 plasmid 2) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

115. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR135245 (Enterococcus faecium isolate E6988 plasmid 3) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

116. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR135245 (Enterococcus faecium isolate E6988 plasmid 3) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

117. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR135256 (Enterococcus faecium isolate E7098 plasmid 3) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

118. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038997 (Enterococcus faecium strain SRR24 plasmid pSRR24) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

119. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019989 (Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

120. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134107 (Enterococcus faecium isolate E6043 plasmid 3) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

121. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134107 (Enterococcus faecium isolate E6043 plasmid 3) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

122. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045014 (Enterococcus faecium strain LAC7.2 plasmid pII, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

123. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN831413 (Enterococcus faecium strain M17/0314 plasmid pM17/0314, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

124. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035656 (Enterococcus faecium strain UAMSEF_09 plasmid unnamed2) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

125. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039730 (Enterococcus faecium strain ZY2 plasmid pZY2) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

126. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019971 (Enterococcus faecium isolate 2014-VREF-114 plasmid p114-1 sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

127. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040238 (Enterococcus faecium strain VB3025 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

128. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012462 (Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p2) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

129. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG640601 (Enterococcus faecium strain SRR6 plasmid pEMSRR6, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

130. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
aacttttttaattgtttcaattgctgtttt	Protospacer
. * ******** ************* *

131. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT598665 (Enterococcus faecium isolate Ef_aus00233 plasmid 3) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

132. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025427 (Enterococcus faecium strain SC4 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

133. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027511 (Enterococcus faecium strain AUSMDU00004055 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

134. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044266 (Enterococcus faecium strain V1836 plasmid pHVH-V1836-2, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

135. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
tttgggtttaataaattcaattgctgataa	Protospacer
 *..  *******. ***************

136. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040742 (Enterococcus faecium strain VRE1 plasmid pVRE1-VanA, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

137. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022343 (Enterococcus faecium strain KUHS13 plasmid pELF2) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

138. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041272 (Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S2) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

139. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019994 (Enterococcus faecium isolate 2014-VREF-268 plasmid p268-2) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

140. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035662 (Enterococcus faecium strain UAMSEF_20 plasmid unnamed2) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atcgtttttaatagattcaattgcttcttg	Protospacer
.**.********** **********  * .

141. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_019009 (Staphylococcus aureus plasmid SAP078A, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
ctcatttttgatagtttcagttgcagcttt	Protospacer
 ********.*********.**** * *

142. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026065 (Staphylococcus aureus strain FDAARGOS_19 plasmid unnamed) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
ctcatttttgatagtttcagttgcagcttt	Protospacer
 ********.*********.**** * *

143. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_014535 (Gloeothece verrucosa PCC 7822 plasmid Cy782206, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
gacatttttaatagtttctaatgcttcttt	Protospacer
* **************** * ****  *

144. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010104 (Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
gctttgtttaatattatcaattgctgatag	Protospacer
*.. * ******* * *************.

145. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010104 (Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
gctttgtttaatattatcaattgctgatag	Protospacer
*.. * ******* * *************.

146. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MT028491 (Ochrobactrum phage vB_OspM_OC, complete genome) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
gccattttcaatagcttcaattgctactgt	Protospacer
*.******.*****.**********. *.

147. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN694607 (Marine virus AFVG_250M465, complete genome) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
ttcatttttaaatgtttcaattgcacctat	Protospacer
 **********  ***********   **

148. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN508817 (Yersinia phage JC221, partial genome) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
atctgttttaatagtttcatttgcttattc	Protospacer
.**  ************** ***** **

149. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_018965 (Staphylococcus aureus plasmid SAP077A, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
ctcatttttgatagtttcagttgcagcttt	Protospacer
 ********.*********.**** * *

150. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_013340 (Staphylococcus aureus plasmid SAP076A, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
ctcatttttgatagtttcagttgcagcttt	Protospacer
 ********.*********.**** * *

151. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028469 (Staphylococcus aureus strain IT1-S plasmid pIT1-S, complete sequence) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
ctcatttttgatagtttcagttgcagcttt	Protospacer
 ********.*********.**** * *

152. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN694237 (Marine virus AFVG_250M414, complete genome) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
ttcatttttaaatgtttcaattgcacctat	Protospacer
 **********  ***********   **

153. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN694635 (Marine virus AFVG_250M372, complete genome) position: , mismatch: 7, identity: 0.767

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
ttcatttttaaatgtttcaattgcacctat	Protospacer
 **********  ***********   **

154. spacer 3.31|2644804|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 7, identity: 0.767

tcaaaagcgcgcatgaggaagaaatcacga	CRISPR spacer
gcgtgagcgcgcacgaggaagaaatcccgc	Protospacer
 *. .********.************ **

155. spacer 3.31|2644804|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039899 (Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence) position: , mismatch: 7, identity: 0.767

tcaaaagcgcgcatgaggaagaaatcacga	CRISPR spacer
tgcaaagcgcgcttgaggaagaaagctggc	Protospacer
*  ********* *********** *  *

156. spacer 3.31|2644804|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039890 (Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence) position: , mismatch: 7, identity: 0.767

tcaaaagcgcgcatgaggaagaaatcacga	CRISPR spacer
tgcaaagcgcgcttgaggaagaaagctggc	Protospacer
*  ********* *********** *  *

157. spacer 2.7|524261|36|LR134397|PILER-CR,CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 8, identity: 0.778

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
ttaataggaggaaataaataatggctatcgtaagaa	Protospacer
  ***************** ***.*****. *  **

158. spacer 3.1|2642821|30|LR134397|CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 8, identity: 0.733

caagttaaagatatcaactacattcagaca	CRISPR spacer
aaagttaaaggtatcaactacaaggattta	Protospacer
 *********.***********   *  .*

159. spacer 3.23|2644275|30|LR134397|CRISPRCasFinder,CRT matches to NZ_CP013462 (Burkholderia ubonensis strain MSMB1471WGS plasmid pMSMB1471, complete sequence) position: , mismatch: 8, identity: 0.733

gcgcttcccatcgatttaaacgcatttaca	CRISPR spacer
gtcgcgtccaacgatttaaacgcatttacc	Protospacer
*.  . .*** ******************

160. spacer 3.26|2644473|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 8, identity: 0.733

ttgttgtcgtcgggtagttcgcccatatct	CRISPR spacer
ccgttgtcgtcggtcagttcgcccagcttg	Protospacer
..*********** .**********  *.

161. spacer 3.26|2644473|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to AP018399 (Xanthomonas phage XacN1 DNA, complete genome) position: , mismatch: 8, identity: 0.733

ttgttgtcgtcgggtagttcgcccatatct	CRISPR spacer
ccgttgtcgtcggtcagttcgcccagcttg	Protospacer
..*********** .**********  *.

162. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
aaacatataaatcaatataatgttgcatta	Protospacer
..  * .************* * *******

163. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MN692983 (Marine virus AFVG_117M11, complete genome) position: , mismatch: 8, identity: 0.733

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
tccaaagttaatcaatataaagatgcaatg	Protospacer
  ..*.** ****************** *.

164. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 8, identity: 0.733

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
ttcattgttaataatttcaattgctttatg	Protospacer
 ***** ******.***********    .

165. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035115 (Lactobacillus plantarum strain SRCM103295 plasmid unnamed2) position: , mismatch: 8, identity: 0.733

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
actatttttaatagttgcaattgccataaa	Protospacer
...************* *******..  **

166. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035567 (Lactobacillus plantarum strain SRCM103300 plasmid unnamed1) position: , mismatch: 8, identity: 0.733

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
actatttttaatagttgcaattgccataaa	Protospacer
...************* *******..  **

167. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_021519 (Lactobacillus plantarum 16 plasmid Lp16H, complete sequence) position: , mismatch: 8, identity: 0.733

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
actatttttaatagttgcaattgccataaa	Protospacer
...************* *******..  **

168. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046662 (Lactobacillus plantarum strain 83-18 plasmid p83-18.2, complete sequence) position: , mismatch: 8, identity: 0.733

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
actatttttaatagttgcaattgccataaa	Protospacer
...************* *******..  **

169. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050809 (Lactobacillus plantarum strain SPC-SNU 72-2 plasmid pLBP443, complete sequence) position: , mismatch: 8, identity: 0.733

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
actatttttaatagttgcaattgccataaa	Protospacer
...************* *******..  **

170. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011490 (Staphylococcus pseudintermedius strain 222 plasmid p222, complete sequence) position: , mismatch: 8, identity: 0.733

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
taaagtttttataatttcaattgctgattt	Protospacer
   * **** ***.**************

171. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035176 (Lactobacillus plantarum strain SRCM103426 plasmid unnamed2) position: , mismatch: 8, identity: 0.733

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
actatttttaatagttgcaattgccataaa	Protospacer
...************* *******..  **

172. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025417 (Lactobacillus plantarum strain X7021 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.733

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
actatttttaatagttgcaattgccataaa	Protospacer
...************* *******..  **

173. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046661 (Lactobacillus plantarum strain 83-18 plasmid p83-18.1, complete sequence) position: , mismatch: 8, identity: 0.733

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
actatttttaatagttgcaattgccataaa	Protospacer
...************* *******..  **

174. spacer 3.31|2644804|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040759 (Paracoccus sp. 2251 plasmid unnamed8, complete sequence) position: , mismatch: 8, identity: 0.733

tcaaaagcgcgcatgaggaagaaatcacga	CRISPR spacer
ccgtcggcgcccatgaggaagcaatcacgg	Protospacer
.*.  .**** ********** *******.

175. spacer 2.15|524261|37|LR134397|CRISPRCasFinder matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 9, identity: 0.757

aaaataggaggaaataaattatgactatcaaattaag	CRISPR spacer
ttaataggaggaaataaataatggctatcgtaagaaa	Protospacer
  ***************** ***.*****. *  **.

176. spacer 3.23|2644275|30|LR134397|CRISPRCasFinder,CRT matches to MW057858 (Providencia phage PSTCR6, complete genome) position: , mismatch: 9, identity: 0.7

gcgcttcccatcgatttaaacgcatttaca	CRISPR spacer
aaatgtcccatcgatttaaacgcaattctc	Protospacer
. .. ******************* ** .

177. spacer 3.26|2644473|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to JN106164 (Uncultured bacterium plasmid pAKD1, complete sequence) position: , mismatch: 9, identity: 0.7

ttgttgtcgtcgggtagttcgcccatatct	CRISPR spacer
ggcaggctgtcgggcagttcgcccatatcc	Protospacer
     *..******.**************.

178. spacer 3.27|2644539|31|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to CP045557 (Citrobacter sp. S39 plasmid pS39-2, complete sequence) position: , mismatch: 9, identity: 0.71

attcgtgaatgccgacaatcgttcatttcca	CRISPR spacer
aagcgtgaatgccgacaatagtccatcattt	Protospacer
*  **************** **.***. ..

179. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 9, identity: 0.7

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
agcatttttaatagcttctattgctctatc	Protospacer
. ************.*** ******

180. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to CP011970 (Peptoclostridium phage phiCDIF1296T strain DSM 1296, complete sequence) position: , mismatch: 9, identity: 0.7

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
agcatttttaatagcttctattgctctatc	Protospacer
. ************.*** ******

181. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to LN681537 (Clostridium phage phiCD211, complete genome) position: , mismatch: 9, identity: 0.7

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
agcatttttaatagcttctattgctctatc	Protospacer
. ************.*** ******

182. spacer 3.30|2644738|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020426 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

gtcatttttaatagtttcaattgctgataa	CRISPR spacer
agcatttttaatagcttctattgctctatc	Protospacer
. ************.*** ******

183. spacer 3.19|2644011|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594660 (Variovorax sp. PBL-H6 plasmid 2) position: , mismatch: 10, identity: 0.667

accaacggcgcgcaaaagaaaatcattaaa	CRISPR spacer
gccaagggcgcgcaaaagaaaaagcggggc	Protospacer
.**** ****************     ..

184. spacer 3.19|2644011|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594667 (Variovorax sp. SRS16 plasmid 2) position: , mismatch: 10, identity: 0.667

accaacggcgcgcaaaagaaaatcattaaa	CRISPR spacer
gccaagggcgcgcaaaagaaaaagcggggc	Protospacer
.**** ****************     ..

185. spacer 3.19|2644011|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594690 (Variovorax sp. WDL1 plasmid 2) position: , mismatch: 10, identity: 0.667

accaacggcgcgcaaaagaaaatcattaaa	CRISPR spacer
gccaagggcgcgcaaaagaaaaagcggggc	Protospacer
.**** ****************     ..

186. spacer 3.19|2644011|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594672 (Variovorax sp. PBL-E5 plasmid 2) position: , mismatch: 10, identity: 0.667

accaacggcgcgcaaaagaaaatcattaaa	CRISPR spacer
gccaagggcgcgcaaaagaaaaagcggggc	Protospacer
.**** ****************     ..

187. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY940428 (UNVERIFIED: Bacillus sp. (in: Bacteria) strain PUMK-07 plasmid pMK-07, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

188. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016317 (Bacillus cereus strain M3 plasmid pBCM301, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

189. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

190. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_011655 (Bacillus cereus AH187 plasmid pAH187_270, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

191. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_010924 (Bacillus cereus strain AH187 plasmid pCER270, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

192. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to CP045776 (Bacillus paranthracis strain CFSAN068816 plasmid p1CFSAN068816, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

193. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

194. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_016792 (Bacillus cereus NC7401 plasmid pNCcld, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

195. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

196. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016361 (Bacillus cereus strain M13 plasmid pBCM1301, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

197. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009595 (Bacillus cereus strain 3a plasmid pBFC_3, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

198. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_011973 (Bacillus cereus Q1 plasmid pBc239, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

199. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047086 (Bacillus paranthracis strain BC307 plasmid pCE1, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

200. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009606 (Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

201. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NC_011777 (Bacillus cereus AH820 plasmid pAH820_272, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

202. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053994 (Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

203. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033789 (Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

204. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053992 (Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.667

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
caaagaaaaaatctatataaagatgcattc	Protospacer
 . .... ***** ***************

205. spacer 2.8|524326|35|LR134397|PILER-CR,CRT matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
agaaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

206. spacer 2.8|524326|35|LR134397|PILER-CR,CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
aagaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

207. spacer 2.8|524326|35|LR134397|PILER-CR,CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
agaaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

208. spacer 2.8|524326|35|LR134397|PILER-CR,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.686

tttgttgaatcaacggatatagattttacaatttc	CRISPR spacer
agaaaaaaatcaaccgatatagattttaaaatctt	Protospacer
   .  .******* ************* ***.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

117145 : 123670

Listeria_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH57345.1\|117145_117607_-	Domain of uncharacterised function (DUF955)	A0A059T7S0	Listeria_phage	3.1e-31	47.9
VEH57346.1\|117603_117939_-	Predicted transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
VEH57347.1\|118155_118584_+	Uncharacterised protein	NA	NA	NA	NA
VEH57348.1\|118595_119012_+	phage transcriptional regulator, ArpU family	A8ASQ1	Listeria_phage	1.3e-20	39.3
VEH57349.1\|119289_119679_+	Uncharacterised protein	NA	NA	NA	NA
VEH57350.1\|119691_120204_+	Predicted secreted protein	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
VEH57351.1\|120251_120554_+	Uncharacterised protein	NA	NA	NA	NA
VEH57352.1\|120595_121000_+	Uncharacterised protein	NA	NA	NA	NA
VEH57353.1\|120986_122855_+	Phage-related protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
VEH57354.1\|122851_123670_+	Phage-related protein	A0A060AFE1	Staphylococcus_phage	4.2e-39	35.0

DBSCAN-SWA_2

1225543 : 1295208

Listeria_phage(89.71%)

portal,protease,tail,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH58849.1\|1225543_1226677_-	Tyrosine recombinase XerD	A8ATC7	Listeria_phage	1.3e-94	50.3
VEH58850.1\|1226803_1227418_-	Uncharacterised protein	A0A059T7Z1	Listeria_phage	1.4e-87	86.3
VEH58851.1\|1227829_1228303_-	Helix-turn-helix domain	R4IDX0	Listeria_phage	3.1e-18	45.3
VEH58852.1\|1228568_1228760_+	Helix-turn-helix domain	A0A059T5F8	Listeria_phage	6.4e-23	92.1
VEH58853.1\|1228795_1229038_+	Uncharacterised protein	A8ATD2	Listeria_phage	1.1e-24	65.0
VEH58854.1\|1229041_1229236_+	Uncharacterised protein	A0A059T7Z3	Listeria_phage	7.4e-19	73.4
VEH58855.1\|1229470_1229623_+	Uncharacterised protein	A8ATD4	Listeria_phage	1.5e-19	100.0
VEH58856.1\|1229756_1229933_+	Uncharacterised protein	NA	NA	NA	NA
VEH58857.1\|1229929_1230205_+	Uncharacterised protein	A0A059T7V3	Listeria_phage	4.3e-36	86.3
VEH58858.1\|1230201_1230648_+	Uncharacterised protein	A0A059T5F9	Listeria_phage	2.9e-74	93.9
VEH58859.1\|1230658_1230862_+	Uncharacterised protein	A8ASN5	Listeria_phage	2.7e-19	92.6
VEH58860.1\|1230919_1231483_+	Protein of uncharacterised function (DUF1642)	Q8W5X2	Listeria_phage	1.8e-36	46.3
VEH58861.1\|1231479_1231626_+	Uncharacterised protein	A8ATZ0	Listeria_phage	2.3e-20	97.9
VEH58862.1\|1231641_1231821_+	Uncharacterised protein	A0A059T5G0	Listeria_phage	1.3e-22	86.4
VEH58863.1\|1231817_1232111_+	Uncharacterised protein	A8ATM4	Listeria_phage	3.4e-31	76.3
VEH58864.1\|1232128_1232650_+	YopX protein	A8ASP1	Listeria_phage	3.1e-35	54.1
VEH58865.1\|1232649_1232919_+	Uncharacterised protein	A0A059T7S7	Listeria_phage	7.3e-41	92.9
VEH58866.1\|1232915_1233539_+	Uncharacterized conserved protein	NA	NA	NA	NA
VEH58867.1\|1233535_1233742_+	Uncharacterised protein	A0A059T6C7	Listeria_phage	3.4e-30	94.1
VEH58868.1\|1233738_1233990_+	Uncharacterised protein	NA	NA	NA	NA
VEH58869.1\|1234093_1234477_+	Uncharacterised protein	A8ATZ3	Listeria_phage	2.5e-58	93.7
VEH58870.1\|1234497_1234725_+	Domain of Uncharacterised Function with PDB structure	A0A059T7N3	Listeria_phage	4.6e-28	84.0
VEH58871.1\|1234736_1235045_+	Uncharacterised protein	A0A059T801	Listeria_phage	8.4e-49	95.1
VEH58872.1\|1235107_1235611_+	Uncharacterised protein	A0A059T8B2	Listeria_phage	9.3e-05	27.3
VEH58873.1\|1235594_1236188_+	Uncharacterised protein	A8ATS5	Listeria_phage	5.9e-59	65.2
VEH58874.1\|1236187_1236760_+	Protein of unknwon function (DUF3310)	A0A059T5J6	Listeria_phage	2.0e-75	73.7
VEH58875.1\|1236756_1236930_+	Uncharacterised protein	A0A059T5G3	Listeria_phage	4.4e-23	96.5
VEH58876.1\|1236926_1237310_+	Uncharacterised protein	A8ATE8	Listeria_phage	1.0e-51	80.3
VEH58877.1\|1237311_1237791_+	Siphovirus Gp157	Q8W5W1	Listeria_phage	5.4e-79	100.0
VEH58878.1\|1237803_1238493_+	phage nucleotide-binding protein	A0A059T7T3	Listeria_phage	2.6e-130	100.0
VEH58879.1\|1238556_1239813_+	ATP-dependent RNA helicase SrmB	Q8W5V9	Listeria_phage	4.9e-236	97.6
VEH58880.1\|1239837_1240323_+	Protein of uncharacterised function (DUF669)	Q8W5V8	Listeria_phage	1.4e-87	99.4
VEH58881.1\|1240345_1242688_+	Uncharacterized conserved protein	A0A059T6A4	Listeria_phage	1.3e-146	43.2
VEH58882.1\|1242982_1243303_+	VRR-NUC domain	Q8W5V6	Listeria_phage	9.9e-53	97.1
VEH58883.1\|1243324_1243855_+	Protein of unknwon function (DUF3310)	A0A059T7T5	Listeria_phage	2.1e-87	88.1
VEH58884.1\|1243855_1244281_+	phage transcriptional regulator, RinA family	Q8W5V4	Listeria_phage	1.0e-68	92.9
VEH58885.1\|1245228_1245528_+	Uncharacterised protein	A0A059T7Y1	Listeria_phage	1.7e-46	98.0
VEH58886.1\|1245524_1247168_+\|terminase	Phage terminase-like protein, large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	98.4
VEH58887.1\|1247177_1247567_-	Uncharacterised protein	A0A1Q1PVT8	Staphylococcus_phage	4.8e-17	39.8
VEH58888.1\|1247617_1248748_+\|portal	phage portal protein, HK97 family	A0A059T6F0	Listeria_phage	1.7e-208	95.2
VEH58889.1\|1248744_1249542_+\|protease	ATP-dependent Clp protease proteolytic subunit 1	A0A059T5F2	Listeria_phage	1.2e-142	98.5
VEH58890.1\|1249568_1250720_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A059T678	Listeria_phage	6.3e-214	100.0
VEH58891.1\|1250726_1250897_+	Uncharacterised protein	A0A059T7Y2	Listeria_phage	6.3e-22	100.0
VEH58892.1\|1250906_1251206_+	Uncharacterised protein	A0A059T7R0	Listeria_phage	5.3e-48	100.0
VEH58893.1\|1251189_1251555_+	Uncharacterised protein	A0A059T6F2	Listeria_phage	9.3e-63	98.3
VEH58894.1\|1251551_1251953_+	Uncharacterised protein	A8ATA2	Listeria_phage	1.1e-64	94.7
VEH58895.1\|1251949_1252333_+	Uncharacterised protein	A0A059T681	Listeria_phage	1.0e-64	96.1
VEH58896.1\|1252353_1252941_+\|tail	phage major tail protein, phi13 family	A0A059T7Y4	Listeria_phage	9.9e-107	99.0
VEH58897.1\|1253011_1253344_+	Uncharacterised protein	A0A059T7R2	Listeria_phage	5.1e-52	97.3
VEH58898.1\|1253394_1253544_+	Uncharacterised protein	A0A059T6F4	Listeria_phage	2.3e-20	100.0
VEH58899.1\|1253559_1258479_+	Phage-related protein	A0A059T5F4	Listeria_phage	0.0e+00	94.8
VEH58900.1\|1258475_1260125_+	Phage-related protein	A0A059T682	Listeria_phage	0.0e+00	98.9
VEH58901.1\|1260140_1262435_+	Phage-related protein	A0A059T7Y6	Listeria_phage	0.0e+00	98.7
VEH58902.1\|1262424_1263519_+	Uncharacterised protein	A0A059T7R4	Listeria_phage	5.6e-196	94.5
VEH58903.1\|1263567_1264011_+	Uncharacterised protein	A0A059T6F6	Listeria_phage	6.8e-76	100.0
VEH58904.1\|1263989_1264406_+	Uncharacterised protein	A0A059T5F5	Listeria_phage	9.3e-43	99.3
VEH58905.1\|1264426_1264690_+	Small integral membrane protein	A0A059T684	Listeria_phage	9.7e-38	93.0
VEH58906.1\|1264686_1264920_+	Uncharacterised protein	R4IBI3	Listeria_phage	4.6e-31	84.4
VEH58907.1\|1264921_1265695_+	N-acetylmuramoyl-L-alanine amidase CwlA precursor	R4ICC5	Listeria_phage	1.3e-85	88.4
VEH58908.1\|1265795_1265990_+	Ftsk gamma domain	NA	NA	NA	NA
VEH58909.1\|1266151_1266724_-	Uncharacterised protein	A0A059T7R6	Listeria_phage	9.0e-97	93.7
VEH58910.1\|1266791_1267241_-	Uncharacterised protein	Q9T196	Listeria_phage	2.1e-69	91.3
VEH58912.1\|1267245_1267596_-	Uncharacterised protein	Q9T195	Listeria_phage	4.9e-53	93.1
VEH58914.1\|1267627_1268005_-	Uncharacterised protein	A0A059T686	Listeria_phage	9.3e-66	97.6
VEH58916.1\|1268507_1268741_+	Uncharacterised protein	A8ATX0	Listeria_phage	2.3e-35	94.8
VEH58918.1\|1268737_1268920_+	Uncharacterised protein	A8ATC6	Listeria_phage	6.3e-12	60.7
VEH58920.1\|1269456_1270710_+	Protein of uncharacterised function (DUF1254)	NA	NA	NA	NA
VEH58922.1\|1270751_1271345_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEH58924.1\|1271498_1271906_-	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA
VEH58926.1\|1272070_1272670_+	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	A0A1X9IGJ2	Lactococcus_phage	1.7e-29	40.5
VEH58928.1\|1272701_1272962_-	Uncharacterised protein	NA	NA	NA	NA
VEH58930.1\|1273085_1274498_+	ATP-dependent RNA helicase dbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.3e-51	31.8
VEH58932.1\|1274522_1274786_+	Protein of uncharacterised function (DUF3116)	NA	NA	NA	NA
VEH58934.1\|1274954_1275431_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
VEH58936.1\|1275469_1275715_-	Uncharacterised protein	NA	NA	NA	NA
VEH58938.1\|1275711_1276917_-	Sulfonamide resistance protein	NA	NA	NA	NA
VEH58940.1\|1277121_1277781_+	Listeriolysin regulatory protein	NA	NA	NA	NA
VEH58942.1\|1278083_1278932_-	Uncharacterized BCR, YitT family COG1284	NA	NA	NA	NA
VEH58944.1\|1279551_1280265_+	Trehalose operon transcriptional repressor	NA	NA	NA	NA
VEH58946.1\|1280295_1281942_-	Trehalose-6-phosphate hydrolase	NA	NA	NA	NA
VEH58948.1\|1281960_1283445_-	EIIBC-Tre	NA	NA	NA	NA
VEH58950.1\|1283560_1284013_+	NUDIX domain	NA	NA	NA	NA
VEH58952.1\|1284059_1284524_-	Uncharacterised protein	NA	NA	NA	NA
VEH58954.1\|1284712_1285633_+	Phospholipase ytpA	NA	NA	NA	NA
VEH58956.1\|1285652_1286900_-	Gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.2e-106	51.8
VEH58958.1\|1286883_1287714_-	Glutamate 5-kinase 1	A0A1X9I5D0	Streptococcus_phage	4.3e-47	42.4
VEH58960.1\|1287849_1288989_-	Uncharacterised protein	NA	NA	NA	NA
VEH58962.1\|1289069_1289465_-	HTH-type transcriptional regulator immR	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
VEH58964.1\|1289615_1289831_+	Helix-turn-helix	NA	NA	NA	NA
VEH58966.1\|1289949_1290483_+	Matrixin	NA	NA	NA	NA
VEH58968.1\|1290500_1291166_+	Uncharacterised protein	NA	NA	NA	NA
VEH58970.1\|1291427_1292366_+	Uncharacterised protein	NA	NA	NA	NA
VEH58971.1\|1292480_1293764_+	Trigger factor	NA	NA	NA	NA
VEH58973.1\|1293948_1295208_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2

DBSCAN-SWA_3

1837958 : 1846244

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH59957.1\|1837958_1838525_-	Phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.3e-26	39.1
VEH59959.1\|1838521_1839571_-	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.3e-64	44.4
VEH59961.1\|1839589_1841017_-	Amidophosphoribosyltransferase precursor	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
VEH59963.1\|1841001_1843221_-	Phosphoribosylformylglycinamidine synthase 2	A6N228	Microbacterium_phage	1.0e-159	41.2
VEH59965.1\|1843213_1843897_-	Phosphoribosylformylglycinamidine synthase 1	NA	NA	NA	NA
VEH59967.1\|1843900_1844146_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
VEH59969.1\|1844157_1844871_-	Phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.7e-42	38.7
VEH59971.1\|1844951_1846244_-	Adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	5.5e-17	32.6

DBSCAN-SWA_4

2505819 : 2513663

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH60863.1\|2505819_2506791_-	Putative sporulation transcription regulator WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
VEH60865.1\|2506798_2507767_-	LPPG:FO 2-phospho-L-lactate transferase	A1IMD5	Streptococcus_phage	6.7e-68	43.3
VEH60867.1\|2507768_2508644_-	glmZ(sRNA)-inactivating NTPase	A0A0R8VB27	Thermobifida_phage	3.2e-08	29.7
VEH60869.1\|2508751_2510482_-	Phosphoglucomutase	A0A1X9I671	Streptococcus_phage	4.3e-174	53.3
VEH60871.1\|2510523_2511567_-	Aldose 1-epimerase precursor	NA	NA	NA	NA
VEH60873.1\|2511601_2512585_-	UDP-glucose 4-epimerase	A0A1V0SG19	Hokovirus	1.6e-48	37.2
VEH60875.1\|2512703_2513663_-	Thioredoxin reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

DBSCAN-SWA_5

2801123 : 2811155

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH61425.1\|2801123_2803277_-	DNA topoisomerase 3	A0A1X9I6W8	Streptococcus_phage	6.7e-44	34.1
VEH61427.1\|2803300_2805073_-	ATP-dependent DNA helicase recQ	A0A2K9L3P7	Tupanvirus	1.1e-79	37.1
VEH61429.1\|2805233_2806700_-	Inosine-5'-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.0e-97	40.0
VEH61431.1\|2806985_2807516_-	O-acetyl-ADP-ribose deacetylase	A0A0K1L687	Scale_drop_disease_virus	2.6e-29	49.3
VEH61433.1\|2807573_2809184_-	Uncharacterized ABC transporter ATP-binding protein HI_1252	A0A2K9L3Z8	Tupanvirus	7.5e-48	29.9
VEH61435.1\|2809700_2811155_+	Aryl-phospho-beta-D-glucosidase BglC	A0A0B5JD41	Pandoravirus	1.9e-50	30.3

Anti-CRISPR protein detection

Acr_ID: LR134397.1|VEH58898.1|1253394_1253544_+|Uncharacterised-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR134397.1|VEH58898.1|1253394_1253544_+|Uncharacterised-protein

1253394_1253544_+

49 aa aa

1225543-1295208

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LR134397_2	Orphan	2.7\|524261\|36\|LR134397\|PILER-CR,CRT	524261-524296	36	1249549-1249584	1
LR134397_3	TypeII	3.27\|2644539\|31\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644539-2644569	31	1248094-1248064	2
LR134397_3	TypeII	3.28\|2644606\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644606-2644635	30	1254316-1254345	1
LR134397_3	TypeII	3.29\|2644672\|30\|LR134397\|CRISPRCasFinder,CRT,PILER-CR	2644672-2644701	30	1253618-1253589	1

1. spacer 2.7|524261|36|LR134397|PILER-CR,CRT matches to LR134397 position: 1249549-1249584, mismatch: 1

aaaataggaggaaataaattatgactatcaaattaa	CRISPR spacer
aaaataggaggaaatagattatgactatcaaattaa	Protospacer
****************.*******************

2. spacer 3.27|2644539|31|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to LR134397 position: 1248094-1248064, mismatch: 2

attcgtgaatgccgacaatcgttcatttcca	CRISPR spacer
atccgtgaatgctgacaatcgttcatttcca	Protospacer
**.*********.******************

3. spacer 3.28|2644606|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to LR134397 position: 1254316-1254345, mismatch: 1

ggtgaggtaaatcaatataaagatgcatta	CRISPR spacer
ggcgaggtaaatcaatataaagatgcatta	Protospacer
**.***************************

4. spacer 3.29|2644672|30|LR134397|CRISPRCasFinder,CRT,PILER-CR matches to LR134397 position: 1253618-1253589, mismatch: 1

tcgtccactctagtagcatctaggtctagg	CRISPR spacer
tcgtccactctagtagcatctagatctagg	Protospacer
***********************.******

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134397

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information