CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134405	Rodentibacter pneumotropicus strain NCTC8284 genome assembly, chromosome: 1	2 crisprs	DEDDh,DinG,cas9,cas1,cas3	3	10	17	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134405_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134405_1

1601909-1602668

orTypeII

Consensus_repeat	Method
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	PILER-CR
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CRISPRCasFinder
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CRT

11 spacers

cas1,cas9

The CRISPR arrays of LR134405_1

>merge|LR134405|1|1601909-1602668|PILER-CR,CRISPRCasFinder,CRT
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAACCTGATTAATTATCTTACCCAGCTAATATTAATTATAGCACTGCGAAATGAAAAAGGGAGCTACAACTAAAGTCTTAAGTAATTTTAAGTACTGGGAATTATAGCACTGCGAAATGAAAAAGGGAGCTACAACTGCAAGGCAATAGCATTACGCGCAACATTCATTATAGCACTGCGAAATGAAAAAGGGAGCTACAACCCATCAGTACAAATCAACGCCCTTAATCAAATTATAGCACTGCGAAATGAAAAAGGGAGCTACAACATGAACATTAATGAATAGCAACTCATTGAAATTATAGCACTGCGAAATGAAAAAGGGAGCTACAACGAAAATAAAAAGAGAATGATGACCGAAAAATTATAGCACTGCGAAATGAAAAGGGAGCTACAACATGCGATTGCTGGATCTGATGGTAGCGTATATTATAGCACTGCGAAATGAAAAAGGGAGCTACAACCTCAAGTGTGAGTAAATCAATCGGCTTGTTATTATAGCACTGCGAAATGAAAAAGGGAGCTACAACCAAGTGCGCTGATTTTGCGTACTATGATTGATTATAGCACTGCGAAATGAAAAAGGGAGCTACAACGCTCACCACGGCATTATTCCGACTATGGTAATTATAGCACTGCGAAATGAAAAAGGGAGCTACAACCCTGCTCTACACCAACCCGCATATATTTCGATTATAGCACTGCGAAATGAAAAAGAGTGACAGATT

>LR134405|1|1|1601909-1602602|PILER-CR
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CTGATTAATTATCTTACCCAGCTAATATTA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	TAAAGTCTTAAGTAATTTTAAGTACTGGGA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	TGCAAGGCAATAGCATTACGCGCAACATTC
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CCATCAGTACAAATCAACGCCCTTAATCAA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	ATGAACATTAATGAATAGCAACTCATTGAA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	GAAAATAAAAAGAGAATGATGACCGAAAA
ATTATAGCACTGCGAAATGAAAAGGGAGCTACAACA	TGCGATTGCTGGATCTGATGGTAGCGTATA
TTATAGCACTGCGAAATGAAAAAGGGAGCTACAACC	TCAAGTGTGAGTAAATCAATCGGCTTGTTA
TTATAGCACTGCGAAATGAAAAAGGGAGCTACAACC	AAGTGCGCTGATTTTGCGTACTATGATTGA
TTATAGCACTGCGAAATGAAAAAGGGAGCTACAACG	CTCACCACGGCATTATTCCGACTATGGTAA
TTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC

>LR134405|1|1|1601909-1602668|CRISPRCasFinder
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CTGATTAATTATCTTACCCAGCTAATATTA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	TAAAGTCTTAAGTAATTTTAAGTACTGGGA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	TGCAAGGCAATAGCATTACGCGCAACATTC
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CCATCAGTACAAATCAACGCCCTTAATCAA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	ATGAACATTAATGAATAGCAACTCATTGAA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	GAAAATAAAAAGAGAATGATGACCGAAAA
ATTATAGCACTGCGAAATGAAAAGGGAGCTACAACA	TGCGATTGCTGGATCTGATGGTAGCGTAT
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CTCAAGTGTGAGTAAATCAATCGGCTTGTT
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CAAGTGCGCTGATTTTGCGTACTATGATTG
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	GCTCACCACGGCATTATTCCGACTATGGTA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CCTGCTCTACACCAACCCGCATATATTTCG
ATTATAGCACTGCGAAATGAAAAAGAGTGACAGATT

>LR134405|1|1|1601909-1602668|CRT
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CTGATTAATTATCTTACCCAGCTAATATTA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	TAAAGTCTTAAGTAATTTTAAGTACTGGGA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	TGCAAGGCAATAGCATTACGCGCAACATTC
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CCATCAGTACAAATCAACGCCCTTAATCAA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	ATGAACATTAATGAATAGCAACTCATTGAA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	GAAAATAAAAAGAGAATGATGACCGAAAA
ATTATAGCACTGCGAAATGAAAAGGGAGCTACAACA	TGCGATTGCTGGATCTGATGGTAGCGTAT
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CTCAAGTGTGAGTAAATCAATCGGCTTGTT
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CAAGTGCGCTGATTTTGCGTACTATGATTG
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	GCTCACCACGGCATTATTCCGACTATGGTA
ATTATAGCACTGCGAAATGAAAAAGGGAGCTACAAC	CCTGCTCTACACCAACCCGCATATATTTCG
ATTATAGCACTGCGAAATGAAAAAGAGTGACAGATT

Protein	Signature genes	Signature genes Name	Protein_function
LR134405.1\|VEH67463.1\|1601522_1601672_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|226043
LR134405.1\|VEH67462.1\|1600613_1601411_+\|CRISPR-associated-endonuclease-Cas1,-subtype-II/NMENI	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
LR134405.1\|VEH67466.1\|1603377_1604400_-\|protease-DegS	unknown	unknown	gnl\|CDD\|273939
LR134405.1\|VEH67470.1\|1606029_1608036_-\|exodeoxyribonuclease-V-gamma-subunit	unknown	unknown	gnl\|CDD\|224249
LR134405.1\|VEH67459.1\|1598767_1599040_+\|Uncharacterized-protein-conserved-in-bacteria	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134405.1\|VEH67455.1\|1596650_1596932_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134405.1\|VEH67471.1\|1608077_1608512_-\|exodeoxyribonuclease-V-gamma-subunit	unknown	unknown	gnl\|CDD\|335690
LR134405.1\|VEH67472.1\|1608660_1609422_-\|exodeoxyribonuclease-V-gamma-subunit	unknown	unknown	gnl\|CDD\|224249
LR134405.1\|VEH67467.1\|1604400_1605522_-\|riboflavin-biosynthesis-protein-RibD	unknown	unknown	gnl\|CDD\|182729
LR134405.1\|VEH67469.1\|1605652_1605973_-\|transcriptional-regulator-NrdR	unknown	unknown	gnl\|CDD\|234774
LR134405.1\|VEH67456.1\|1597401_1597716_+\|Uncharacterized-protein-conserved-in-bacteria	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134405.1\|VEH67468.1\|1605524_1605698_-\|transcriptional-regulator-NrdR	unknown	unknown	gnl\|CDD\|234774
LR134405.1\|VEH67465.1\|1603175_1603370_-\|metal-dependent-phosphohydrolase,-HD-domain-protein	unknown	unknown	gnl\|CDD\|235165
LR134405.1\|VEH67457.1\|1597983_1598403_+\|Uncharacterized-protein-conserved-in-bacteria	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134405.1\|VEH67458.1\|1598426_1598822_+\|Uncharacterized-protein-conserved-in-bacteria	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134405.1\|VEH67460.1\|1598994_1599342_+\|Uncharacterized-protein-conserved-in-bacteria	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134405.1\|VEH67473.1\|1609483_1609777_-\|membrane-protein	unknown	unknown	gnl\|CDD\|340060
LR134405.1\|VEH67454.1\|1596217_1596523_-\|Cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
LR134405.1\|VEH67461.1\|1599343_1600381_+\|Uncharacterized-protein-conserved-in-bacteria	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134405.1\|VEH67464.1\|1602777_1603170_-\|metal-dependent-phosphohydrolase,-HD-domain-protein	unknown	unknown	gnl\|CDD\|235165

Protein	Function_ID	Function_description	E-value
LR134405.1\|VEH67463.1\|1601522_1601672_+\|Uncharacterised-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.66773e-05
LR134405.1\|VEH67462.1\|1600613_1601411_+\|CRISPR-associated-endonuclease-Cas1,-subtype-II/NMENI	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	4.75855e-122
LR134405.1\|VEH67466.1\|1603377_1604400_-\|protease-DegS	gnl\|CDD\|273939	TIGR02038, Protease_degS_precursor., periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E). [Protein fate, Degradation of proteins, peptides, and glycopeptides, Regulatory functions, Protein interactions].	1.15616e-162
LR134405.1\|VEH67470.1\|1606029_1608036_-\|exodeoxyribonuclease-V-gamma-subunit	gnl\|CDD\|224249	COG1330, RecC, Exonuclease V gamma subunit [DNA replication, recombination, and repair].	0
LR134405.1\|VEH67465.1\|1603175_1603370_-\|metal-dependent-phosphohydrolase,-HD-domain-protein	gnl\|CDD\|235165	PRK03826, PRK03826, 5'-nucleotidase; Provisional.	1.13419e-24
LR134405.1\|VEH67471.1\|1608077_1608512_-\|exodeoxyribonuclease-V-gamma-subunit	gnl\|CDD\|335690	pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.	5.65303e-55
LR134405.1\|VEH67472.1\|1608660_1609422_-\|exodeoxyribonuclease-V-gamma-subunit	gnl\|CDD\|224249	COG1330, RecC, Exonuclease V gamma subunit [DNA replication, recombination, and repair].	2.82699e-77
LR134405.1\|VEH67467.1\|1604400_1605522_-\|riboflavin-biosynthesis-protein-RibD	gnl\|CDD\|182729	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD.	1.50164e-180
LR134405.1\|VEH67469.1\|1605652_1605973_-\|transcriptional-regulator-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	3.69478e-54
LR134405.1\|VEH67456.1\|1597401_1597716_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	1.72295e-34
LR134405.1\|VEH67468.1\|1605524_1605698_-\|transcriptional-regulator-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	4.73546e-28
LR134405.1\|VEH67459.1\|1598767_1599040_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	5.8066e-23
LR134405.1\|VEH67457.1\|1597983_1598403_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	3.00776e-44
LR134405.1\|VEH67458.1\|1598426_1598822_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	3.71374e-31
LR134405.1\|VEH67460.1\|1598994_1599342_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	9.35954e-39
LR134405.1\|VEH67473.1\|1609483_1609777_-\|membrane-protein	gnl\|CDD\|340060	pfam17344, DUF5374, Family of unknown function (DUF5374). This is a family of unknown function found in Pasteurellaceae.	6.54666e-13
LR134405.1\|VEH67454.1\|1596217_1596523_-\|Cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	5.96439e-12
LR134405.1\|VEH67461.1\|1599343_1600381_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	6.26495e-126
LR134405.1\|VEH67464.1\|1602777_1603170_-\|metal-dependent-phosphohydrolase,-HD-domain-protein	gnl\|CDD\|235165	PRK03826, PRK03826, 5'-nucleotidase; Provisional.	1.99253e-72

>LR134405.1|VEH67463.1|1601522_1601672_+|Uncharacterised-protein
MSENIFMRMIVLFDLPVTTKAKCEQQINSANFYLRMDIKCYNYLFTQEL
>LR134405.1|VEH67462.1|1600613_1601411_+|CRISPR-associated-endonuclease-Cas1,-subtype-II/NMENI
MTWRSILISKGGKLSLQKNQMLIQQESNEFTVPLEDIAIVVVESRETVITIPLLSAFGLYGITLLTCDEQFLPCGQWLPFNQYHRQLKTLKLQLEASLPQKKQLWQKIVQQKILNQAKVLSICTFQVASDRLFKMAEQVKSGDKDNLEAQSAVIYFQTLFGKGFKRTEDENAVNSALNYGYTVMRSAVARALVLYGWLPQIGLFHHSELNAFNLADDFIEPFRPLVDLLVIQLANEDRLSINLSPILKQRLIKVLNYQLLFKQEK
>LR134405.1|VEH67461.1|1599343_1600381_+|Uncharacterized-protein-conserved-in-bacteria
MDEKGFIERNLNDTRYVARFLCNFIADNMLLVGKGKRNVFASNGQITALLRHRWGLQKVREQNDRHHALDAVVVACSTVAMQQKITRFVRYNEGNVFSGERIDRETGEIIPLHFPSPWAFFKENVEIRIFSENPKLELENRLPDYPQYNHEWVQPLFVSRMPTRKMTGQGHMETVKSAKRLNEGLSVLKVPLTQLKLSDLERMVNRDREIALYESLKARLEQFGNDPAKAFAEPFYKKGGALVKAVRLEQTQKSGVLVRDGNGVADNASMVRVDVFTKGGKYFLVPIYTWQVAKGILPNRAATQGKDENDWDIMDEMATFQFSLCQNDLIKLVTKRKQSLDILMD
>LR134405.1|VEH67460.1|1598994_1599342_+|Uncharacterized-protein-conserved-in-bacteria
MFPHFVGEPKGKDILKMRLYELQQAKCLYSGKSLELHRLLEKGYVEVDHALPFSRTWDDSFNNKVLVLANENQNKGNLTPYEWLDGKITVSVGNILLYEYKPAVSLMLKTTHFEP
>LR134405.1|VEH67459.1|1598767_1599040_+|Uncharacterized-protein-conserved-in-bacteria
MPTIPADEIRNPVVLRTLTQARKVINAVVRLYGSPARIHIETAREVGKSYQDRKNLKNSKKIIVSNVKVRSKNLKKCFRILWGSRKVKIF
>LR134405.1|VEH67458.1|1598426_1598822_+|Uncharacterized-protein-conserved-in-bacteria
MKFYHQIRKTLGSAELKKEWNELKGNSDLLDEIGTAFSLYKTDDDICRYLEGKLPERVLNALLENLNFDKFIQLSLKALHQILPLMLQGQRYDEAVSAIYGDHYGKNRQKQPACCRLFLPMKSEILWYYAP
>LR134405.1|VEH67457.1|1597983_1598403_+|Uncharacterized-protein-conserved-in-bacteria
MDLLAEMELLFQRQAELGNSYTSTTLLENLTALLMWQKPALAGDAILKMLGKCTFEPSEYKAAKNSYSAERFVWLTKLNNLRILENGTERALNDNERFALLEQPYEKSKLTYAQVRAMLALSDNAIFKGVRYLGEDKKQ
>LR134405.1|VEH67456.1|1597401_1597716_+|Uncharacterized-protein-conserved-in-bacteria
MQNNPLNYILGLDLGIASIGWAVVEIDEESSPIRLIDVGVRTFERAEVAKTGESLALSRRLARSSRRLIKRRAERLKKAKRLLKAEKILHSIDENYPLMFGSFE
>LR134405.1|VEH67455.1|1596650_1596932_-|Uncharacterised-protein
MSSLSGSQAVFLKIAEKELADKVPSNLIRAMTPLFNDANVVLCFGNQYAPEKMWMRNVRICYSSQSNFDPKIIGQLNSLIYECKQPVHFIRNK
>LR134405.1|VEH67454.1|1596217_1596523_-|Cell-division-protein-FtsZ
MPEFDITVIASSYQAGDDKSSRAEMAAKDVMNNLMEQSSYINKQAKSCLMNIKAGVDMTFEEFTEISRILWQEIGEDTTVVVGTSLDMDLQGILVSTAVII
>LR134405.1|VEH67464.1|1602777_1603170_-|metal-dependent-phosphohydrolase,-HD-domain-protein
MYHDTSEIFTGDLPTPIKYFNPEITQAYKQIESAAELHLISLLPQELQEDFASYLDSETFSDEEKHLVKQADLICAYIKAQFELDNGNQEFKTAKTRLEALMQQWHSKEMDYFLQVFMPSFGRSLDEIAL
>LR134405.1|VEH67465.1|1603175_1603370_-|metal-dependent-phosphohydrolase,-HD-domain-protein
MEIKTSHFFACLDRLRLIQRWSLMRNIEKENLAEHSLQVAFVAQALAIIKINFLVARLIRNALL
>LR134405.1|VEH67466.1|1603377_1604400_-|protease-DegS
MLRKLFYSALWGLAAAGIILFAVPRINSSNIFTSDDIVSFKNAVRIASPAVVNVYNRSFSSASIDDNDQLQVNNLGSGVIMSKDGYILTNKHVIQNADQIVVALQNGNIYEANLIGSDNLTDLAVLKIHADNLSTIPQNANRQVHVGDVALAIGNPYNLGQSVSQGIISAVGRSAVGDSLGRQNFIQTDASINRGNSGGALINSAGELVGISTLSIGKTSTEIAEGLNFAIPMDIANDVLHKIIRDGRVIRGYFGVQSEINSSAEQGILITGVTPNSPASKAGIQVGDVILKLNNQEGISTREMMQIISNTKPNTRVTVTVMRLGRVFDLSVMVEELPSN
>LR134405.1|VEH67467.1|1604400_1605522_-|riboflavin-biosynthesis-protein-RibD
MSDQFTAQDYQFMQRALDLAAKGVYTTTPNPAVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQAGEKAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMEDPNPQVAGKGLKMLAEAGIESAVNLLKDSTEKLNKGFLKRMREGKPFVQLKLAMSLDGKTAMASGESKWITGVASRADVQKMRAKSSALLSTSATVLADNPSLNVRWEDFSNDLKKEYVKDTLRQPVRVILDSQHRIQPSHKLFETDAPVWLVSSEARDLANFPDFCEQIILPKENLLSELMIELGKRQINTLWSEAGKNLAGSLIEQKLVDELILYIAPKLLGEKARSLCSLPHLTQLADAPLWQLDKVQQIGDDIKLIYTPKGS
>LR134405.1|VEH67468.1|1605524_1605698_-|transcriptional-regulator-NrdR
MQLRATGEREVPSQLVGKLAMNELKEIDKVAYIRFASVYLSFDNINQFTKEIESLKD
>LR134405.1|VEH67469.1|1605652_1605973_-|transcriptional-regulator-NrdR
MHCPFCSTEETKVIDSRLVSDGYQVRRRRECGHCHERFTTFETAELVIPKIIKSDGSREPFNEDKLRSGIQHALEKRPVSSDDVEKAISHIICNYVLPVSVKCRAN
>LR134405.1|VEH67470.1|1606029_1608036_-|exodeoxyribonuclease-V-gamma-subunit
MLVSCYLALLRLKESAFSAEEILTFLDIPALRECFDISLSDLPLVREWISDAGIRFGLQKNQEGINFNSWQAGLERMVLGYAMREEHGIWQDCLGFDSSYGLKGLLAGKLSRFFTVLSHWHKTLQQAHPIEKWHEILTALLTDFFAQNEQTNDTLFYIQEKINEVVQQLTSIHFDLSLQVDVIADVMTTKLEESPNSLKFLAGKVNFCTLLPMRAVPFKVVCLLGMNEADYPRTQTPNSFDLMQYHHQKGDRVRRDDDRYLFLEALLAARDYCYISYIGRSIIDNQTREPSVLVSQLLDYINQRDEQRLQVQQHAMTAFSPSNFKNEGNFNRSFATKWLPMAKDGGQAEPKEFASMMEHQEKITEIELERLVGFVENPVKFFFEKQLGVYFRDEDDRIADSENFTLDGLDNYRLNNDLVYADEQQFDKYFAQATVKGVLPRAQFGRVAAENTRNIVLEFKEKIVDLGEPAHRSVDFTLNVTWQEKEQAIRLFGYMDNLFNDTQQVIEWHFASYKDRYRIRPWLYYLIQCITQKTAIPPKLITKDQVIEFPQVSYETALAQLQIYVQAYLQSQVEIQPIPTVGKISDFIIKDESAVDFDGILTTLQKLAEDEKRGNYKKKADPYWARLLAQTMKFENRENLLVLLKQTTDWFGVLFAKNDPKSLNKGMK
>LR134405.1|VEH67471.1|1608077_1608512_-|exodeoxyribonuclease-V-gamma-subunit
MQQGLVETTYHNEHLQTGNPLLAAWGKMGRDFLYTLIRDEERIPTYSVNAYEEISASTLLGQLQSHILHLENQPLNIEKNDRSLTVHACHSAMREVEVLQDYLLHLFNQEPTLTPKDVVMMVADINQYTPYIQAVFGQKMVKHL
>LR134405.1|VEH67472.1|1608660_1609422_-|exodeoxyribonuclease-V-gamma-subunit
MFIVYYSNQLEKQKDILAELFKTLPREDPFQQDIILVQSPGMAQWLQMELAKKNGVSAHLAFPMPATFIWQLYADNLPAVSLQNPFDKDSMMWRLMRLMPDFLGREEFSPLRHYLASSPHSEQYKCYQLSRKIADLFDQYLVYRPEWIFAWEKGEDEGIVTQIKTQQAHLNETLLQQILGNVAWQGVLWRALVSDIKADMGENATHRAALHEQFLALLNNKNQSKNCQAAFLFLVFRHYRLPICLFCKPCHRK
>LR134405.1|VEH67473.1|1609483_1609777_-|membrane-protein
MILKPLVNKGISLTSVMFTLTVFSTLFLVFNRWTASQRQSAVKIYHDFQALQIAENQAQRQFLGLSCEQQAKQNGIAFQIQCQGNRVVIRSPQGEFP

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Crispr_ID: LR134405_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134405_2

1752864-1753002

Orphan

Consensus_repeat	Method
ACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGCCTCGTTTCCCGCTCCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134405_2

>merge|LR134405|2|1752864-1753002|CRISPRCasFinder
ACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGCCTCGTTTCCCGCTCCAATTTCACATTCTCTGCGGGAATAGCTCAGTTGGTAGAGCACAACCTTGCCAAGGTTGGGGTCGCGAGTTCGAGCCTCGTTTCCCGCTCCAA

>LR134405|2|2|1752864-1753002|CRISPRCasFinder
ACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGCCTCGTTTCCCGCTCCAA	TTTCACATTCTCTGCGGGAATAGCTCAGTTGGTAGAGCACA
ACCTTGCCAAGGTTGGGGTCGCGAGTTCGAGCCTCGTTTCCCGCTCCAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134405.1\|VEH67704.1\|1751086_1751539_-\|ribosome-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
LR134405.1\|VEH67701.1\|1747475_1747733_-\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|182777
LR134405.1\|VEH67709.1\|1753194_1753626_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|182615
LR134405.1\|VEH67712.1\|1756798_1757734_+\|tRNA-delta(2)-isopentenylpyrophosphate-transferase	unknown	unknown	gnl\|CDD\|234626
LR134405.1\|VEH67702.1\|1747921_1750144_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|274303
LR134405.1\|VEH67699.1\|1745654_1747145_-\|phosphoenolpyruvate-protein-phosphotransferase	unknown	unknown	gnl\|CDD\|183017
LR134405.1\|VEH67708.1\|1752469_1752742_+\|oligoribonuclease	unknown	unknown	gnl\|CDD\|235429
LR134405.1\|VEH67705.1\|1751609_1752125_-\|ribosome-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
LR134405.1\|VEH67717.1\|1767227_1767773_-\|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|131433
LR134405.1\|VEH67706.1\|1752195_1752306_+\|oligoribonuclease	unknown	unknown	gnl\|CDD\|235429
LR134405.1\|VEH67716.1\|1766697_1767228_-\|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|131433
LR134405.1\|VEH67714.1\|1759198_1760050_+\|glutamate-ammonia-ligase-adenylyltransferase	unknown	unknown	gnl\|CDD\|236836
LR134405.1\|VEH67713.1\|1757738_1759214_+\|glutamate-ammonia-ligase-adenylyltransferase	unknown	unknown	gnl\|CDD\|236836
LR134405.1\|VEH67700.1\|1747213_1747375_-\|phosphoenolpyruvate-protein-phosphotransferase	unknown	unknown	gnl\|CDD\|183017
LR134405.1\|VEH67710.1\|1753792_1754818_+\|N-acetylmuramoyl-L-alanine-amidase-AmiB	unknown	unknown	gnl\|CDD\|236692
LR134405.1\|VEH67718.1\|1767862_1768270_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
LR134405.1\|VEH67711.1\|1754908_1756798_+\|DNA-mismatch-repair-protein	unknown	unknown	gnl\|CDD\|234630
LR134405.1\|VEH67715.1\|1760046_1760685_+\|glutamate-ammonia-ligase-adenylyltransferase	unknown	unknown	gnl\|CDD\|236836
LR134405.1\|VEH67703.1\|1750200_1750461_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134405.1\|VEH67707.1\|1752302_1752473_+\|oligoribonuclease	unknown	unknown	gnl\|CDD\|235429

Protein	Function_ID	Function_description	E-value
LR134405.1\|VEH67704.1\|1751086_1751539_-\|ribosome-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	1.71426e-106
LR134405.1\|VEH67701.1\|1747475_1747733_-\|phosphocarrier-protein-HPr	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	1.89569e-39
LR134405.1\|VEH67709.1\|1753194_1753626_+\|ATP-binding-protein	gnl\|CDD\|182615	PRK10646, PRK10646, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE.	1.51563e-62
LR134405.1\|VEH67712.1\|1756798_1757734_+\|tRNA-delta(2)-isopentenylpyrophosphate-transferase	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.00116e-166
LR134405.1\|VEH67702.1\|1747921_1750144_-\|Uncharacterised-protein	gnl\|CDD\|274303	TIGR02794, Protein_TolA, TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	3.45126e-05
LR134405.1\|VEH67699.1\|1745654_1747145_-\|phosphoenolpyruvate-protein-phosphotransferase	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
LR134405.1\|VEH67708.1\|1752469_1752742_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	6.30689e-64
LR134405.1\|VEH67705.1\|1751609_1752125_-\|ribosome-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	4.60547e-104
LR134405.1\|VEH67706.1\|1752195_1752306_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	1.70664e-18
LR134405.1\|VEH67716.1\|1766697_1767228_-\|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.01895e-88
LR134405.1\|VEH67714.1\|1759198_1760050_+\|glutamate-ammonia-ligase-adenylyltransferase	gnl\|CDD\|236836	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase.	1.05397e-130
LR134405.1\|VEH67713.1\|1757738_1759214_+\|glutamate-ammonia-ligase-adenylyltransferase	gnl\|CDD\|236836	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase.	0
LR134405.1\|VEH67700.1\|1747213_1747375_-\|phosphoenolpyruvate-protein-phosphotransferase	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	2.76319e-13
LR134405.1\|VEH67710.1\|1753792_1754818_+\|N-acetylmuramoyl-L-alanine-amidase-AmiB	gnl\|CDD\|236692	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional.	2.83606e-91
LR134405.1\|VEH67718.1\|1767862_1768270_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	2.26148e-100
LR134405.1\|VEH67711.1\|1754908_1756798_+\|DNA-mismatch-repair-protein	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
LR134405.1\|VEH67715.1\|1760046_1760685_+\|glutamate-ammonia-ligase-adenylyltransferase	gnl\|CDD\|236836	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase.	5.80476e-116
LR134405.1\|VEH67717.1\|1767227_1767773_-\|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	6.16863e-75
LR134405.1\|VEH67707.1\|1752302_1752473_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	4.50917e-31

>LR134405.1|VEH67708.1|1752469_1752742_+|oligoribonuclease
MKRWVPKGVSPICGNSIAQDKRFLYQYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKANTHLALDDIRESIKELAYYRDHFIQLD
>LR134405.1|VEH67707.1|1752302_1752473_+|oligoribonuclease
MNILAEGPVLAIHQSDELLGKMSEWCVKTHTANGLVDRVKASKLTERAAELQTLDF
>LR134405.1|VEH67706.1|1752195_1752306_+|oligoribonuclease
MQLDKENLIWIDLEMTGLDPEKERIIEIATIVTDKT
>LR134405.1|VEH67705.1|1751609_1752125_-|ribosome-biogenesis-GTPase-RsgA
MAKPKLTQNQARRIESNHTRTLHRHKKKEIEWQDEMLGESQEGIVVTRYSVHADVENAQGEICRCNLRRTLSSLVVGDRVIWRKGNRQLQGVSGVIEAIQPRVNEIKRPDYYDGLKPIAANIDRIIIVSAVLPTLSLNIIDRYLVVCEIASIEPIIVVNKGDLLTSEQEKK
>LR134405.1|VEH67704.1|1751086_1751539_-|ribosome-biogenesis-GTPase-RsgA
MEKLTALLSEGTSIFVGQSGVGKSSLINHIFPTVNAQVGEVSETSGLGQHTTTSSRLYHLPQGGSLIDSPGIREFGLWHLDADQITKGYREFQYVLGTCKFRDCKHLHDPGCALREAVEEGRISPIRYENYHKLIASLSEIKSQRHFSAT
>LR134405.1|VEH67703.1|1750200_1750461_-|Uncharacterised-protein
MFYENLFASSFSSTKDFGNSTPGVSYTMPVNSVTYFKVIQDAKDKVKLVHVDNAVAEQEVAQLPRENQTLSRVNVRDCNNAVYSKK
>LR134405.1|VEH67702.1|1747921_1750144_-|Uncharacterised-protein
MIANYQINQGEQLIIEARAQSNYQLVDDKTGFAPDNIITKRDGKDLKIYLNDGDMSEDIIIKDYYGDEIGETTNLLVGKHENGSIYAYIPESGLQPDAVSLLADQAVAPQALGGEELVSAFWAFNPWWLLALAPLAAGIAIAAHDGGNNSGGGDLNTQADGAAKLVEDAEVKAKALDDKIKELEADGNISAEDKATLDALKADADAAKAKADEAVKGLPADNAAKDALQGRVDAIDNRVPDVTPDQTDSSNWGVDTDGWIENDSTADNPPDTDPSDESGEDNTPQLDPTVIVTGRTVLSNPTNAVMTKIRDKNPNVPTTQIQKVGSQAQFVTGEEDNTVVVGKGDKDNISGKNSITNGLIQTNGGSDKVVITNNSINTVIDTGADNDSVDIYGNLRHTGASAPESKIDTGNGDDVLTIRGRITGLKNQLMMGDGDDTVIVAGGATGNTTAQNNMQTKTNWNAIDLGEGNDKLSMGEKGPGNIQYTDIQAGIGDDVVILKPNRGKGDLLWVNVDLGDGNDSIVVAATDIRNVYISGGAGNDTIDLSASSTQTDATRSRVISSKVDGGEGNDHIILGKIDYVDDYPVDVTGGAGDDVITFTQDYAPFLTSNRIGASISGGDGFDTVAIKGTAMISLASGTAGTQKLPEGIINFESIDMTASGGQTVKLTASDVLANSGMLYIAGDSSDTVDLGNDGSSSLGGFTKTAETTARIALDGKEHTYTAYSNGDVKVYIDDQITNII
>LR134405.1|VEH67701.1|1747475_1747733_-|phosphocarrier-protein-HPr
MFSKDVEITAPNGLHTRPAAQFVKEAKGFASDITVTSTGKSASAKSLFKLQTLGLTQGTVITISAEGEDEQQAVEHLVALIPTLE
>LR134405.1|VEH67700.1|1747213_1747375_-|phosphoenolpyruvate-protein-phosphotransferase
MISGIPASPGVVFGKALVLKEEKIVLDTTKLLMTKLTLKLRVFMKAVVRLLSS
>LR134405.1|VEH67699.1|1745654_1747145_-|phosphoenolpyruvate-protein-phosphotransferase
MILEDEELEEEIIDYLRSHKVNAGVAASKIIDQQVEMLSEIDDEYLKERAGDIRDIGNRLVKNILGMNIVDLGDINEESILVAYDLTPSETAQLNLDKVLGFITDIGGRTSHTSIMARSLELPAIVGTNNVTEKVNTGDFLILDAVNNKVYINPAQAQIDELKALEEKLVEEKAELAKLKDLPAVTLDGHKVEVVANIGTIRDCEGANRNGAEGVGLYRTEFLFMDRDQLPTEEEQFIAYKEVVEAMAGRLVVLRTMDIGGDKDLPYLDLPKEMNPFLGWRAIRIALDRREILHAQLRAVLRASAFGKLAVMFPMIISVEEIRELKSVIEALKAELRAEGKAFDENIQIGVMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMQPSVLGLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISVPRIKKLIRSVNFQEAKELADTALQKPTASEIEQLIEGFLSEKH
>LR134405.1|VEH67709.1|1753194_1753626_+|ATP-binding-protein
MLRFGKKLADTILNCHAKRAVILYLNGDLGAGKTTLTRGMVQGLGFQGKVKSPTYTLVEEYDIAGKMVYHFDLYRLSDPEELEFMGIRDYFAKDAICLIEWAEKGEGILPSADLLVNIDYYDDARNMTLVAQNALGEQILQQL
>LR134405.1|VEH67710.1|1753792_1754818_+|N-acetylmuramoyl-L-alanine-amidase-AmiB
MTLSIARELKALLDKDPNFRGVLTRNCDYYISVPERSEIARKFKANYLVSIHADSSLNPSQRGASVWVLSNRRANDEMGQWLEDDEKRSELLGGAGKVLSHNNDKYLDQTVLDLQFGHSQRTGYEIGRNILRRFSKITTLSRNTPQHASLGVLRSPDIPSVLVETGFLSNAEEEQKLNSPAYRRRIAYMIYEGLVAYRNGNLKSLIAFEDNKENDAKTDRTLSTKGEIKDSGIRHKVKNGESIGSLANKYEVKISDIITLNKLKRKELWIGETIKIPDNGKNQKMVETKKAEKTTKSADKKTIRKLIKTTRKTAKLMEKKRIFRAITPSKRSNNLRGFTGI
>LR134405.1|VEH67711.1|1754908_1756798_+|DNA-mismatch-repair-protein
MAIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQVDIENGGATLIRIRDNGSGIPKEELSLALARHATSKIADLEDLESILSLGFRGEALASISSVSRLTLTSRTAEQKEAWQVYAQGRDMETTIKPASHPVGSTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIALAKFNIAFTLTHNGKVIRQYRPASELSQQLKRVATICGEEFVKNALRIDWKHNDLHLSGWIATPNFSRAQNDLSYCYINGRMVRDKVITHAIRQAYAEHLPSENYPAFVLFIDLNPHEVDINVHPTKHEVRFHQQRLIHDFIYEGISHALESQLSVPLAYPKESAVENPQENEMREPIPTCQKGWNHKPNRAAAGQNMFAPNASMEKSAQNPPHFSAHTVPSSNQGYRDYRENYRAEQPSKTEQKLYGELLDTPKHSKKTAIFTDEIIEPTDMSENPSYLRALSLIENCALLLQQNQRYFLLSLEKLQHLQWKLALQQSQIEQQSLLIPIVFRLTENQFSEWEKKAENFAQVGFEFIANKTQLRLTLNRVPMILRTQNLQKCVMGLLNDTENSTPFLTALCSQLESKTFNVFADAVKLLSDLERLLNNPNRDEFNQLLKPINWQPLLDEL
>LR134405.1|VEH67712.1|1756798_1757734_+|tRNA-delta(2)-isopentenylpyrophosphate-transferase
MKPTAIFLMGPTASGKTDLAIQLHQQLPVEVISVDSALIYKGMDIGTAKPSKEELALAPHRLIDILDPAESYSAMNFRDDALSEMAKITAQGKIPLLVGGTMLYYKALLEGLSPLPSADETIRADIEQKAAQQGWAMLHNELTKIDPISAQRINPNDSQRINRALEVFYITGKSLTELTEQKGEALPYDIIQFAIAPEDRHILHNRIEQRFHKMIELGFQEEVEKLYARSDLTPDLPSIRCVGYRQMWDYLQGDYDHDEMVFRGICATRQLAKRQITWLRGWKTPVQWLDSLQPDQAKETVLRQIEAHIKS
>LR134405.1|VEH67713.1|1757738_1759214_+|glutamate-ammonia-ligase-adenylyltransferase
MTALSSLIEQKLTVLGTLMCQSFPDMDAHAISQQIKQYQKDKSHPIGELGYAVAMSDFVEKVLQKQPHLLAQWWKKSPTFADCEQYSARLNNQLSDIFHEAEFYKVLRVFRNIEMAKLSFCQSLNLASVEEIFIRLSQLAEGLIISALDWLYRKACTEMGTPLDEQGKPQQLYILGMGKLGGFELNFSSDIDLIFTYPAQGETHIEGSNARKPVDNAKFFTRLGQRLISALDDFTADGFVYRTDMRLRPFGESGALALSFSAMEQYYQDQGRDWERYAMIKGRILGAQTHDPNVTYLEKMLHPFVYRRYIDFSVLQSLREMKGKIEREVRRRGLKDNIKLGAGGIREVEFIAQVFQLIRGGREIALQQHSLLKILPEIAKLGIITQTQYQNLRESYIFLRRVENILQAINDQQTQTLPTNQTDQLRLIEACRHFTCLDEQNHLIECNYAIQNWQDFYRTLQQMQENVRAVFNQLIGEENNEYREENQWLDF
>LR134405.1|VEH67714.1|1759198_1760050_+|glutamate-ammonia-ligase-adenylyltransferase
MVGFLEADFDEIEQMLQESGIQSDDVDGILNKLGQFKESLNRRAIGQRGREVLTQLMPMVFSLIFKQESYRTLLPRILHLIEKISSRTTYLELLLENPQALRQVIELCGKSQLISDQLSQHPILLDELLNTESLRNPLPFTRYADELQQYLLRLPPNDEEQFINALRQFKQATLLRVAAADILGALPVMKVSDHLTYLAEAIIQSVVNLAWKQVSARFGIPQHLQNGEKNFLVVGYGKLGGLELGYKSDLDLVFLYEAVEGQTVGGKKSLIVISFTLNLPKKS
>LR134405.1|VEH67715.1|1760046_1760685_+|glutamate-ammonia-ligase-adenylyltransferase
MSIFSLNTSAGVLYDIDMRLRPSGDAGLLGCSLSAFENYQLNEAWTWEKQALVRSRPVFGEQSLREKFENIRQRVLSTPRDMTTLKQDVSEMREKMFAHLSHSQENEFNIKTDRGGITDIEFIAQYLMLAHAPQNPALTKWSDNVRIFESMADAGIIHQEDSVRLKQCYVDLRNKIHHLNLIGYSPVVPKNDFVEKREFIKSFWKNLFRIES
>LR134405.1|VEH67716.1|1766697_1767228_-|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MFRDGQMDMAHWSFALIAAMLPYLMLNLGIPLGPKYKVFMGDAGSTLVGFTIIWILLLSTQGKGHPMNPVTALWVIAIPLIDMVAIIYRRLRKGKSPFRPDRLHVHHLMVRAGLTSRQAFLLITLMSAICATIGILGEIYYINEWVMFIGFLSCFSLCLLNYKSMANYTFSKTNKT
>LR134405.1|VEH67717.1|1767227_1767773_-|undecaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MLSFVKNDEGLFMLSLIVTFLGAFLTLMVMRPIANKIGLVDKPNYRKRHQGAIPLIGGVSLFVGNLCYYLMEWEQLRLPYLYLFSIFVLLAIGILDDRFDISPFLRAGIQAVLAILMIDLGNVYLDHFGQILGPFQLTLGSIGLVITVFATIAIINAFNMIDGIDGLLGGLSCVSLRRLAF
>LR134405.1|VEH67718.1|1767862_1768270_+|glutamate-1-semialdehyde-2,1-aminomutase
MANSTALFSRAQQIIPGGVNSPVRAFKGVGGTPVFIQKAQGAYIYDTDSKQYIDYVGSWGPMILGHNHPTILNAVLKATENGLSFGAPTPSEIDLAELVCELMPSIEMVRMVSSGTEATMTAIRLARGYTGRDKI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
LR134405_1	1.6\|1602275\|29\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602275-1602303	29	LR134405.1	258239-258267	1.0
LR134405_1	1.9\|1602472\|30\|LR134405\|PILER-CR	1602472-1602501	30	LR134405.1	87962-87991	1.0
LR134405_1	1.13\|1602471\|30\|LR134405\|CRISPRCasFinder,CRT	1602471-1602500	30	LR134405.1	87962-87991	1.0

1. spacer 1.6|1602275|29|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to position: 258239-258267, mismatch: 0, identity: 1.0

gaaaataaaaagagaatgatgaccgaaaa	CRISPR spacer
gaaaataaaaagagaatgatgaccgaaaa	Protospacer
*****************************

2. spacer 1.9|1602472|30|LR134405|PILER-CR matches to position: 87962-87991, mismatch: 0, identity: 1.0

caagtgcgctgattttgcgtactatgattg	CRISPR spacer
caagtgcgctgattttgcgtactatgattg	Protospacer
******************************

3. spacer 1.13|1602471|30|LR134405|CRISPRCasFinder,CRT matches to position: 87962-87991, mismatch: 0, identity: 1.0

caagtgcgctgattttgcgtactatgattg	CRISPR spacer
caagtgcgctgattttgcgtactatgattg	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134405_1	1.4\|1602143\|30\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602143-1602172	30	NC_003315	Haemophilus phage HP2, complete genome	17338-17367	3	0.9
LR134405_1	1.4\|1602143\|30\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602143-1602172	30	AY027935	Haemophilus influenzae phage HP2, complete genome	17338-17367	3	0.9
LR134405_1	1.4\|1602143\|30\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602143-1602172	30	U24159	Bacteriophage HP1 strain HP1c1, complete genome	18210-18239	3	0.9
LR134405_1	1.4\|1602143\|30\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602143-1602172	30	NC_001697	Haemophilus phage HP1, complete genome	18210-18239	3	0.9
LR134405_1	1.10\|1602538\|30\|LR134405\|PILER-CR	1602538-1602567	30	NC_011409	Haemophilus influenzae plasmid ICEhin1056, complete sequence	10607-10636	3	0.9
LR134405_1	1.14\|1602537\|30\|LR134405\|CRISPRCasFinder,CRT	1602537-1602566	30	NC_011409	Haemophilus influenzae plasmid ICEhin1056, complete sequence	10607-10636	3	0.9
LR134405_1	1.11\|1602340\|29\|LR134405\|CRISPRCasFinder,CRT	1602340-1602368	29	KY883634	Vibrio phage JSF5, complete genome	662-690	4	0.862
LR134405_1	1.11\|1602340\|29\|LR134405\|CRISPRCasFinder,CRT	1602340-1602368	29	KY883635	Vibrio phage JSF6, complete genome	662-690	4	0.862
LR134405_1	1.11\|1602340\|29\|LR134405\|CRISPRCasFinder,CRT	1602340-1602368	29	MH310934	Vibrio phage ICP1_2006_E, complete genome	46945-46973	4	0.862
LR134405_1	1.11\|1602340\|29\|LR134405\|CRISPRCasFinder,CRT	1602340-1602368	29	HQ641352	Vibrio phage ICP1_2005_A, complete genome	47015-47043	4	0.862
LR134405_1	1.7\|1602340\|30\|LR134405\|PILER-CR	1602340-1602369	30	KY883634	Vibrio phage JSF5, complete genome	661-690	5	0.833
LR134405_1	1.7\|1602340\|30\|LR134405\|PILER-CR	1602340-1602369	30	KY883635	Vibrio phage JSF6, complete genome	661-690	5	0.833
LR134405_1	1.7\|1602340\|30\|LR134405\|PILER-CR	1602340-1602369	30	MH310934	Vibrio phage ICP1_2006_E, complete genome	46944-46973	5	0.833
LR134405_1	1.7\|1602340\|30\|LR134405\|PILER-CR	1602340-1602369	30	HQ641352	Vibrio phage ICP1_2005_A, complete genome	47014-47043	5	0.833
LR134405_1	1.10\|1602538\|30\|LR134405\|PILER-CR	1602538-1602567	30	KC170283	Uncultured bacterium plasmid pDS1, complete sequence	21684-21713	5	0.833
LR134405_1	1.14\|1602537\|30\|LR134405\|CRISPRCasFinder,CRT	1602537-1602566	30	KC170283	Uncultured bacterium plasmid pDS1, complete sequence	21684-21713	5	0.833
LR134405_1	1.10\|1602538\|30\|LR134405\|PILER-CR	1602538-1602567	30	NZ_CP020374	Shewanella khirikhana strain TH2012 plasmid pSTH1, complete sequence	17285-17314	6	0.8
LR134405_1	1.10\|1602538\|30\|LR134405\|PILER-CR	1602538-1602567	30	NZ_CP031358	Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence	96865-96894	6	0.8
LR134405_1	1.10\|1602538\|30\|LR134405\|PILER-CR	1602538-1602567	30	NZ_CP038019	Eikenella exigua strain PXX plasmid unnamed1, complete sequence	8010-8039	6	0.8
LR134405_1	1.14\|1602537\|30\|LR134405\|CRISPRCasFinder,CRT	1602537-1602566	30	NZ_CP020374	Shewanella khirikhana strain TH2012 plasmid pSTH1, complete sequence	17285-17314	6	0.8
LR134405_1	1.14\|1602537\|30\|LR134405\|CRISPRCasFinder,CRT	1602537-1602566	30	NZ_CP031358	Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence	96865-96894	6	0.8
LR134405_1	1.14\|1602537\|30\|LR134405\|CRISPRCasFinder,CRT	1602537-1602566	30	NZ_CP038019	Eikenella exigua strain PXX plasmid unnamed1, complete sequence	8010-8039	6	0.8
LR134405_1	1.1\|1601945\|30\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1601945-1601974	30	MK250029	Prevotella phage Lak-C1, complete genome	186871-186900	7	0.767
LR134405_1	1.1\|1601945\|30\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1601945-1601974	30	MK250016	Prevotella phage Lak-A1, complete genome	227667-227696	7	0.767
LR134405_1	1.1\|1601945\|30\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1601945-1601974	30	MK250019	Prevotella phage Lak-A2, complete genome	147204-147233	7	0.767
LR134405_1	1.2\|1602011\|30\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602011-1602040	30	NZ_CP031887	Staphylococcus aureus strain CFSAN082783 plasmid pMRSA_24, complete sequence	35548-35577	7	0.767
LR134405_1	1.6\|1602275\|29\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602275-1602303	29	NZ_CP034300	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence	99593-99621	7	0.759
LR134405_1	1.6\|1602275\|29\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602275-1602303	29	AP014859	Vibrio parahaemolyticus plasmid pVP2HP DNA, complete sequence, strain: VPE61	78669-78697	7	0.759
LR134405_1	1.6\|1602275\|29\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602275-1602303	29	AP014861	Vibrio parahaemolyticus plasmid pVPE61b DNA, complete sequence, strain: VPE61	25114-25142	7	0.759
LR134405_1	1.6\|1602275\|29\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602275-1602303	29	NZ_CP033143	Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence	67793-67821	7	0.759
LR134405_1	1.6\|1602275\|29\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602275-1602303	29	NZ_CP045862	Vibrio owensii strain SH14 plasmid pVHvo-R, complete sequence	6892-6920	7	0.759
LR134405_1	1.6\|1602275\|29\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602275-1602303	29	NZ_CP009849	Vibrio parahaemolyticus strain FORC_004 plasmid pFORC4, complete sequence	35210-35238	7	0.759
LR134405_1	1.6\|1602275\|29\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602275-1602303	29	NZ_CP034303	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-4, complete sequence	10944-10972	7	0.759
LR134405_1	1.6\|1602275\|29\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602275-1602303	29	NZ_CP046413	Vibrio parahaemolyticus strain 19-021-D1 plasmid pVp_Kor-D1-1, complete sequence	32433-32461	7	0.759
LR134405_1	1.15\|1602603\|30\|LR134405\|CRISPRCasFinder,CRT	1602603-1602632	30	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	57929-57958	7	0.767
LR134405_1	1.15\|1602603\|30\|LR134405\|CRISPRCasFinder,CRT	1602603-1602632	30	MH078572	Staphylococcus phage phiSA_BS1, complete genome	12783-12812	7	0.767
LR134405_1	1.6\|1602275\|29\|LR134405\|PILER-CR,CRISPRCasFinder,CRT	1602275-1602303	29	NZ_CP020895	Legionella longbeachae strain F1157CHC plasmid pLLO-F1157CHC, complete sequence	13637-13665	8	0.724
LR134405_2	2.1\|1752913\|41\|LR134405\|CRISPRCasFinder	1752913-1752953	41	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	202586-202626	8	0.805

1. spacer 1.4|1602143|30|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to NC_003315 (Haemophilus phage HP2, complete genome) position: , mismatch: 3, identity: 0.9

ccatcagtacaaatcaacgcccttaatcaa	CRISPR spacer
ccatctgtacaaattaacgcccttaatcag	Protospacer
***** ********.**************.

2. spacer 1.4|1602143|30|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to AY027935 (Haemophilus influenzae phage HP2, complete genome) position: , mismatch: 3, identity: 0.9

ccatcagtacaaatcaacgcccttaatcaa	CRISPR spacer
ccatctgtacaaattaacgcccttaatcag	Protospacer
***** ********.**************.

3. spacer 1.4|1602143|30|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to U24159 (Bacteriophage HP1 strain HP1c1, complete genome) position: , mismatch: 3, identity: 0.9

ccatcagtacaaatcaacgcccttaatcaa	CRISPR spacer
ccatctgtacaaattaacgcccttaatcag	Protospacer
***** ********.**************.

4. spacer 1.4|1602143|30|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to NC_001697 (Haemophilus phage HP1, complete genome) position: , mismatch: 3, identity: 0.9

ccatcagtacaaatcaacgcccttaatcaa	CRISPR spacer
ccatctgtacaaattaacgcccttaatcag	Protospacer
***** ********.**************.

5. spacer 1.10|1602538|30|LR134405|PILER-CR matches to NC_011409 (Haemophilus influenzae plasmid ICEhin1056, complete sequence) position: , mismatch: 3, identity: 0.9

gctcaccacggcattattccgactatggta	CRISPR spacer
gctcaccatggcattattccgactatgatt	Protospacer
********.******************.*

6. spacer 1.14|1602537|30|LR134405|CRISPRCasFinder,CRT matches to NC_011409 (Haemophilus influenzae plasmid ICEhin1056, complete sequence) position: , mismatch: 3, identity: 0.9

gctcaccacggcattattccgactatggta	CRISPR spacer
gctcaccatggcattattccgactatgatt	Protospacer
********.******************.*

7. spacer 1.11|1602340|29|LR134405|CRISPRCasFinder,CRT matches to KY883634 (Vibrio phage JSF5, complete genome) position: , mismatch: 4, identity: 0.862

tgcgattgctggatctgatggta-gcgtat	CRISPR spacer
tgcgattgctgcatctggtggtatccgta-	Protospacer
*********** *****.*****  ****

8. spacer 1.11|1602340|29|LR134405|CRISPRCasFinder,CRT matches to KY883635 (Vibrio phage JSF6, complete genome) position: , mismatch: 4, identity: 0.862

tgcgattgctggatctgatggta-gcgtat	CRISPR spacer
tgcgattgctgcatctggtggtatccgta-	Protospacer
*********** *****.*****  ****

9. spacer 1.11|1602340|29|LR134405|CRISPRCasFinder,CRT matches to MH310934 (Vibrio phage ICP1_2006_E, complete genome) position: , mismatch: 4, identity: 0.862

tgcgattgctggatctgatggta-gcgtat	CRISPR spacer
tgcgattgctgcatctggtggtatccgta-	Protospacer
*********** *****.*****  ****

10. spacer 1.11|1602340|29|LR134405|CRISPRCasFinder,CRT matches to HQ641352 (Vibrio phage ICP1_2005_A, complete genome) position: , mismatch: 4, identity: 0.862

tgcgattgctggatctgatggta-gcgtat	CRISPR spacer
tgcgattgctgcatctggtggtatccgta-	Protospacer
*********** *****.*****  ****

11. spacer 1.7|1602340|30|LR134405|PILER-CR matches to KY883634 (Vibrio phage JSF5, complete genome) position: , mismatch: 5, identity: 0.833

atgcgattgctggatctgatggta-gcgtat	CRISPR spacer
gtgcgattgctgcatctggtggtatccgta-	Protospacer
.*********** *****.*****  ****

12. spacer 1.7|1602340|30|LR134405|PILER-CR matches to KY883635 (Vibrio phage JSF6, complete genome) position: , mismatch: 5, identity: 0.833

atgcgattgctggatctgatggta-gcgtat	CRISPR spacer
gtgcgattgctgcatctggtggtatccgta-	Protospacer
.*********** *****.*****  ****

13. spacer 1.7|1602340|30|LR134405|PILER-CR matches to MH310934 (Vibrio phage ICP1_2006_E, complete genome) position: , mismatch: 5, identity: 0.833

atgcgattgctggatctgatggta-gcgtat	CRISPR spacer
gtgcgattgctgcatctggtggtatccgta-	Protospacer
.*********** *****.*****  ****

14. spacer 1.7|1602340|30|LR134405|PILER-CR matches to HQ641352 (Vibrio phage ICP1_2005_A, complete genome) position: , mismatch: 5, identity: 0.833

atgcgattgctggatctgatggta-gcgtat	CRISPR spacer
gtgcgattgctgcatctggtggtatccgta-	Protospacer
.*********** *****.*****  ****

15. spacer 1.10|1602538|30|LR134405|PILER-CR matches to KC170283 (Uncultured bacterium plasmid pDS1, complete sequence) position: , mismatch: 5, identity: 0.833

gctcaccacggcattattccgactatggta	CRISPR spacer
gcccaccacggcattattccgacgatgcac	Protospacer
**.******************** ***

16. spacer 1.14|1602537|30|LR134405|CRISPRCasFinder,CRT matches to KC170283 (Uncultured bacterium plasmid pDS1, complete sequence) position: , mismatch: 5, identity: 0.833

gctcaccacggcattattccgactatggta	CRISPR spacer
gcccaccacggcattattccgacgatgcac	Protospacer
**.******************** ***

17. spacer 1.10|1602538|30|LR134405|PILER-CR matches to NZ_CP020374 (Shewanella khirikhana strain TH2012 plasmid pSTH1, complete sequence) position: , mismatch: 6, identity: 0.8

gctcaccacggcattattccgactatggta	CRISPR spacer
gcgcaccacggcattatcccgactcacgaa	Protospacer
** **************.******   * *

18. spacer 1.10|1602538|30|LR134405|PILER-CR matches to NZ_CP031358 (Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gctcaccacggcattattccgactatggta	CRISPR spacer
gatcaccacggcatcattccgactgaagaa	Protospacer
* ************.*********. .* *

19. spacer 1.10|1602538|30|LR134405|PILER-CR matches to NZ_CP038019 (Eikenella exigua strain PXX plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

gctcaccacggcattattccgactatggta	CRISPR spacer
gcccaccacggcattatcccgacccgggca	Protospacer
**.**************.*****.  **.*

20. spacer 1.14|1602537|30|LR134405|CRISPRCasFinder,CRT matches to NZ_CP020374 (Shewanella khirikhana strain TH2012 plasmid pSTH1, complete sequence) position: , mismatch: 6, identity: 0.8

gctcaccacggcattattccgactatggta	CRISPR spacer
gcgcaccacggcattatcccgactcacgaa	Protospacer
** **************.******   * *

21. spacer 1.14|1602537|30|LR134405|CRISPRCasFinder,CRT matches to NZ_CP031358 (Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

gctcaccacggcattattccgactatggta	CRISPR spacer
gatcaccacggcatcattccgactgaagaa	Protospacer
* ************.*********. .* *

22. spacer 1.14|1602537|30|LR134405|CRISPRCasFinder,CRT matches to NZ_CP038019 (Eikenella exigua strain PXX plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

gctcaccacggcattattccgactatggta	CRISPR spacer
gcccaccacggcattatcccgacccgggca	Protospacer
**.**************.*****.  **.*

23. spacer 1.1|1601945|30|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 7, identity: 0.767

ctgattaattatcttacccagctaatatta	CRISPR spacer
tacctgaattatattatccagctaatatta	Protospacer
.   * ****** ***.*************

24. spacer 1.1|1601945|30|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.767

ctgattaattatcttacccagctaatatta	CRISPR spacer
tacctgaattatattatccagctaatatta	Protospacer
.   * ****** ***.*************

25. spacer 1.1|1601945|30|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 7, identity: 0.767

ctgattaattatcttacccagctaatatta	CRISPR spacer
tacctgaattatattatccagctaatatta	Protospacer
.   * ****** ***.*************

26. spacer 1.2|1602011|30|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031887 (Staphylococcus aureus strain CFSAN082783 plasmid pMRSA_24, complete sequence) position: , mismatch: 7, identity: 0.767

taaagtcttaagtaattttaagtactggga	CRISPR spacer
ttctatcaaaagtaattttaagtactgcga	Protospacer
*   .**  ****************** **

27. spacer 1.6|1602275|29|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034300 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence) position: , mismatch: 7, identity: 0.759

gaaaataaaaagagaatgatgaccgaaaa	CRISPR spacer
ttaaattaaaagagaatgctgaccgacgt	Protospacer
  **** *********** ******* .

28. spacer 1.6|1602275|29|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to AP014859 (Vibrio parahaemolyticus plasmid pVP2HP DNA, complete sequence, strain: VPE61) position: , mismatch: 7, identity: 0.759

gaaaataaaaagagaatgatgaccgaaaa	CRISPR spacer
ttaaattaaaagagaatgctgaccgacgt	Protospacer
  **** *********** ******* .

29. spacer 1.6|1602275|29|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to AP014861 (Vibrio parahaemolyticus plasmid pVPE61b DNA, complete sequence, strain: VPE61) position: , mismatch: 7, identity: 0.759

gaaaataaaaagagaatgatgaccgaaaa	CRISPR spacer
ttaaattaaaagagaatgctgaccgacgt	Protospacer
  **** *********** ******* .

30. spacer 1.6|1602275|29|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033143 (Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence) position: , mismatch: 7, identity: 0.759

gaaaataaaaagagaatgatgaccgaaaa	CRISPR spacer
ttaaattaaaagagaatgctgaccgacgt	Protospacer
  **** *********** ******* .

31. spacer 1.6|1602275|29|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045862 (Vibrio owensii strain SH14 plasmid pVHvo-R, complete sequence) position: , mismatch: 7, identity: 0.759

gaaaataaaaagagaatgatgaccgaaaa	CRISPR spacer
ttaaattaaaagagaatgctgaccgacgt	Protospacer
  **** *********** ******* .

32. spacer 1.6|1602275|29|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009849 (Vibrio parahaemolyticus strain FORC_004 plasmid pFORC4, complete sequence) position: , mismatch: 7, identity: 0.759

gaaaataaaaagagaatgatgaccgaaaa	CRISPR spacer
ttaaattaaaagagaatgctgaccgacgt	Protospacer
  **** *********** ******* .

33. spacer 1.6|1602275|29|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034303 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-4, complete sequence) position: , mismatch: 7, identity: 0.759

gaaaataaaaagagaatgatgaccgaaaa	CRISPR spacer
ttaaattaaaagagaatgctgaccgacgt	Protospacer
  **** *********** ******* .

34. spacer 1.6|1602275|29|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046413 (Vibrio parahaemolyticus strain 19-021-D1 plasmid pVp_Kor-D1-1, complete sequence) position: , mismatch: 7, identity: 0.759

gaaaataaaaagagaatgatgaccgaaaa	CRISPR spacer
ttaaattaaaagagaatgctgaccgacgt	Protospacer
  **** *********** ******* .

35. spacer 1.15|1602603|30|LR134405|CRISPRCasFinder,CRT matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 7, identity: 0.767

cctgctctacaccaacccgcatatatttcg	CRISPR spacer
acggatgtagaccaacccgcatatatttat	Protospacer
 * * * ** ******************

36. spacer 1.15|1602603|30|LR134405|CRISPRCasFinder,CRT matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 7, identity: 0.767

cctgctctacaccaacccgcatatatttcg	CRISPR spacer
acggatgtagaccaacccgcatatatttat	Protospacer
 * * * ** ******************

37. spacer 1.6|1602275|29|LR134405|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020895 (Legionella longbeachae strain F1157CHC plasmid pLLO-F1157CHC, complete sequence) position: , mismatch: 8, identity: 0.724

gaaaataaaaagagaatgatgaccgaaaa	CRISPR spacer
tggtataaaaagaatatgatgaccgaagg	Protospacer
 .. *********. ************..

38. spacer 2.1|1752913|41|LR134405|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.805

----tttcacattctctgcgggaatagctcagttggtagagcaca	CRISPR spacer
gttgcttgata----ctgcgggaatagctcagttggtagagcacg	Protospacer
    .** *.*    *****************************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

239924 : 245137

Streptomyces_phage(50.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH65236.1\|239924_240179_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	3.2e-06	40.3
VEH65237.1\|240350_241328_+	DNA polymerase III subunit alpha	A0A0K1Y9G6	Streptomyces_phage	1.2e-51	40.9
VEH65238.1\|241285_242146_+	DNA polymerase III subunit alpha	A0A0K1Y8J9	Streptomyces_phage	1.6e-52	46.1
VEH65239.1\|242213_243020_+	DNA polymerase III subunit alpha	A0A0K1Y8F0	Streptomyces_phage	2.3e-29	36.6
VEH65240.1\|242959_243397_+	DNA polymerase III subunit alpha	NA	NA	NA	NA
VEH65241.1\|243490_243586_+	peptide deformylase	NA	NA	NA	NA
VEH65242.1\|243591_243999_+	peptide deformylase	E3SLL2	Synechococcus_phage	1.7e-17	42.7
VEH65243.1\|244180_245137_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	30.8

DBSCAN-SWA_2

355639 : 363750

Bacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH65398.1\|355639_356398_-	glycosyltransferase	A0A1C3NFH8	Phage_NCTB	2.8e-05	35.8
VEH65399.1\|356459_357047_+	3-deoxy-D-manno-octulosonic-acid transferase	NA	NA	NA	NA
VEH65400.1\|357024_357741_+	3-deoxy-D-manno-octulosonic-acid transferase	NA	NA	NA	NA
VEH65401.1\|357737_358217_+	phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.2e-23	41.3
VEH65402.1\|358204_358432_+	Predicted periplasmic lipoprotein	NA	NA	NA	NA
VEH65403.1\|358403_359363_+	ATP-dependent DNA helicase Rep	A7KV33	Bacillus_phage	2.1e-61	41.5
VEH65404.1\|359353_359800_+	ATP-dependent DNA helicase Rep	G3MA40	Bacillus_virus	2.3e-23	49.2
VEH65405.1\|359817_360423_+	ATP-dependent DNA helicase Rep	A7KV33	Bacillus_phage	1.6e-19	37.4
VEH65406.1\|360943_361147_-	metallophosphoesterase	NA	NA	NA	NA
VEH65407.1\|361214_361550_-	metallophosphoesterase	NA	NA	NA	NA
VEH65408.1\|361513_361636_-	metallophosphoesterase	NA	NA	NA	NA
VEH65409.1\|361637_362297_-	transcriptional regulator NadR	A0A0C5K935	Enterococcus_phage	1.3e-54	48.6
VEH65410.1\|362455_362665_-	transcriptional regulator NadR	NA	NA	NA	NA
VEH65411.1\|363102_363750_+	3,4-dihydroxy-2-butanone 4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.0e-43	44.9

DBSCAN-SWA_3

370121 : 408396

Haemophilus_phage(65.38%)

tail,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH65422.1\|370121_370400_-	Uncharacterised protein	F6MIM2	Haemophilus_phage	6.4e-40	80.4
VEH65423.1\|370468_371734_-	Uncharacterised protein	U4KJA1	Streptococcus_phage	1.1e-78	55.9
VEH65424.1\|372025_372487_-	Uncharacterised protein	F6MIM0	Haemophilus_phage	1.7e-29	49.6
VEH65425.1\|372479_372671_-	Uncharacterised protein	NA	NA	NA	NA
VEH65426.1\|372927_373086_-	Uncharacterised protein	F6MIL9	Haemophilus_phage	2.9e-05	78.6
VEH65427.1\|373085_374420_-\|tail	Phage tail fibre repeat	Q7Y5S2	Haemophilus_phage	2.5e-20	36.0
VEH65428.1\|374421_375012_-	Uncharacterized protein conserved in bacteria (DUF2313)	F6MIL7	Haemophilus_phage	2.1e-72	69.3
VEH65429.1\|375011_375452_-	Uncharacterized homolog of phage Mu protein gp47	F6MIL6	Haemophilus_phage	3.9e-47	63.7
VEH65430.1\|375412_376075_-	Uncharacterized homolog of phage Mu protein gp47	F6MIL6	Haemophilus_phage	2.7e-68	68.5
VEH65431.1\|376089_376440_-	Phage protein GP46	A0A0M3LQK5	Mannheimia_phage	2.1e-43	73.3
VEH65432.1\|376514_376796_-	Mu-like prophage protein gp45	A0A0M3LPA3	Mannheimia_phage	8.8e-13	47.9
VEH65433.1\|376792_377149_-	Mu-like prophage protein gp45	F6MIL4	Haemophilus_phage	8.2e-40	69.2
VEH65434.1\|377148_377667_-\|tail	Mu-like prophage tail protein gpP	F6MIL3	Haemophilus_phage	7.0e-56	71.8
VEH65435.1\|377902_378277_-\|tail	Mu-like prophage tail protein gpP	F6MIL3	Haemophilus_phage	3.0e-40	68.4
VEH65436.1\|378266_379220_-	Mu-like prophage DNA circulation protein	F6MIL2	Haemophilus_phage	2.7e-53	38.8
VEH65437.1\|379605_380121_-	Uncharacterised protein	F6MIL1	Haemophilus_phage	3.5e-07	47.4
VEH65438.1\|380108_380954_-	Uncharacterised protein	NA	NA	NA	NA
VEH65439.1\|380959_382096_-\|tail	Phage-related minor tail protein	A0A0M3LPB6	Mannheimia_phage	1.4e-40	40.1
VEH65440.1\|382142_382268_-	Uncharacterised protein	NA	NA	NA	NA
VEH65441.1\|382363_382705_-	Uncharacterised protein	F6MIK9	Haemophilus_phage	3.1e-12	37.9
VEH65442.1\|382704_383076_-	Uncharacterised protein	A0A0M3LRV6	Mannheimia_phage	1.6e-38	66.7
VEH65443.1\|383085_384501_-\|tail	Mu-like prophage tail sheath protein gpL	B7SDP8	Haemophilus_phage	3.2e-151	59.8
VEH65444.1\|384493_384673_-	Uncharacterised protein	A0A0M3LQM9	Mannheimia_phage	2.0e-10	59.3
VEH65445.1\|384675_385143_-	Uncharacterised protein	NA	NA	NA	NA
VEH65446.1\|385102_385741_-	Mu-like prophage protein gp37	A0A0M3LQJ7	Mannheimia_phage	1.5e-47	47.2
VEH65447.1\|385724_386126_-	Mu-like prophage protein gp36	B7SDP4	Haemophilus_phage	1.6e-31	58.0
VEH65448.1\|386155_386401_-	Uncharacterised protein	B7SDP3	Haemophilus_phage	1.0e-12	45.5
VEH65449.1\|386606_387089_-\|head	Mu-like prophage major head subunit gpT	B7SDP1	Haemophilus_phage	2.5e-63	73.8
VEH65450.1\|387049_387529_-\|head	Mu-like prophage major head subunit gpT	B7SDP1	Haemophilus_phage	4.5e-57	76.6
VEH65451.1\|387528_387798_-	Mu-like prophage I protein	B7SDN9	Haemophilus_phage	3.5e-19	62.8
VEH65452.1\|387785_387920_-	Uncharacterised protein	NA	NA	NA	NA
VEH65453.1\|387999_388206_-	Mu-like prophage I protein	B7SDN9	Haemophilus_phage	3.7e-08	50.7
VEH65454.1\|388163_388568_-	Mu-like prophage I protein	B7SDN9	Haemophilus_phage	9.7e-37	67.0
VEH65455.1\|388848_389295_-	Mu-like prophage protein gpG	B7SDN8	Haemophilus_phage	1.3e-26	49.3
VEH65456.1\|389409_390156_-	Uncharacterised protein	B7SDN5	Haemophilus_phage	5.2e-44	44.3
VEH65457.1\|390152_390353_-\|head	phage head morphogenesis protein, SPP1 gp7 family	B7SDN5	Haemophilus_phage	2.3e-15	67.3
VEH65458.1\|390431_390707_-	Uncharacterised protein	A0A0M3LSH7	Mannheimia_phage	1.2e-14	51.3
VEH65459.1\|390693_390984_-	Mu-like prophage protein gp29	B7SDN1	Haemophilus_phage	6.7e-16	57.7
VEH65460.1\|390931_391462_-	Mu-like prophage protein gp29	A0A0M3LRU4	Mannheimia_phage	5.9e-50	64.1
VEH65461.1\|391425_392334_-	Mu-like prophage protein gp29	B7SDN1	Haemophilus_phage	2.4e-115	73.9
VEH65462.1\|392344_393733_-	phage uncharacterized protein, C-terminal domain	B7SDN0	Haemophilus_phage	9.8e-222	85.5
VEH65463.1\|393723_393990_-	Uncharacterised protein	B7SDN0	Haemophilus_phage	1.9e-12	62.7
VEH65464.1\|393991_394096_-	Uncharacterised protein	NA	NA	NA	NA
VEH65465.1\|394092_394557_-	Protein of uncharacterised function (DUF1804)	F6MIK6	Haemophilus_phage	2.3e-34	48.4
VEH65466.1\|394602_394794_-	Uncharacterised protein	NA	NA	NA	NA
VEH65467.1\|394867_395125_-	Uncharacterised protein	NA	NA	NA	NA
VEH65468.1\|395248_395506_-	Protein of uncharacterised function (DUF2681)	NA	NA	NA	NA
VEH65469.1\|395505_395697_-	Protein of uncharacterised function (DUF2644)	F6MIK0	Haemophilus_phage	4.6e-05	49.0
VEH65470.1\|395941_396445_-	Predicted lysozyme (DUF847)	A0A0M3LSH2	Mannheimia_phage	5.6e-58	67.5
VEH65471.1\|396462_396966_-	Uncharacterised protein	A0A0M3LRS6	Mannheimia_phage	1.3e-19	46.6
VEH65472.1\|397079_397430_-	Uncharacterised protein	A0A0M3LQH8	Mannheimia_phage	1.3e-18	41.2
VEH65473.1\|397489_397894_-	Mu-like prophage protein gp16	A0A0M3LP80	Mannheimia_phage	4.8e-20	44.5
VEH65474.1\|397909_398260_-	Uncharacterised protein	NA	NA	NA	NA
VEH65475.1\|398246_398732_-	Uncharacterised protein	A0A2H4JFV8	uncultured_Caudovirales_phage	5.1e-24	40.0
VEH65476.1\|398809_399091_-	Uncharacterised protein	NA	NA	NA	NA
VEH65477.1\|399124_399391_-	Uncharacterised protein	NA	NA	NA	NA
VEH65478.1\|399436_399907_-	Uncharacterised protein	NA	NA	NA	NA
VEH65479.1\|400144_400300_-	Uncharacterised protein	NA	NA	NA	NA
VEH65480.1\|400296_400524_-	Uncharacterised protein	NA	NA	NA	NA
VEH65481.1\|400520_400691_-	Uncharacterised protein	NA	NA	NA	NA
VEH65482.1\|400687_400852_-	Uncharacterised protein	NA	NA	NA	NA
VEH65483.1\|401105_401726_-	Protein of uncharacterised function (DUF3164)	A0A0M3LQ92	Mannheimia_phage	7.1e-71	61.7
VEH65484.1\|401728_401923_-	Uncharacterised protein	F6MII8	Haemophilus_phage	7.2e-14	68.3
VEH65485.1\|401932_402142_-	Uncharacterised protein	NA	NA	NA	NA
VEH65486.1\|402152_403034_-	putative secretion ATPase, PEP-CTERM locus subfamily	A0A0M3LP72	Mannheimia_phage	6.2e-121	77.1
VEH65487.1\|403076_403322_+	Uncharacterised protein	NA	NA	NA	NA
VEH65488.1\|403299_403584_-	Uncharacterised protein	F6MII5	Haemophilus_phage	1.4e-13	49.5
VEH65489.1\|403565_403901_-\|transposase	Mu transposase, C-terminal	NA	NA	NA	NA
VEH65490.1\|403875_404571_-	Integrase core domain	A0A0M3LPN5	Mannheimia_phage	1.7e-73	64.6
VEH65491.1\|404567_405272_-	Mu DNA-binding domain	F6MII5	Haemophilus_phage	2.5e-48	55.1
VEH65492.1\|405280_405469_-	phage-associated protein, BcepMu gp16 family	NA	NA	NA	NA
VEH65493.1\|405603_406098_+	Uncharacterised protein	NA	NA	NA	NA
VEH65494.1\|406266_406512_+	putative bacteriophage transcriptional regulator	F6MII3	Haemophilus_phage	3.0e-09	39.5
VEH65495.1\|406791_407892_-	xylose transport system permease protein XylH	NA	NA	NA	NA
VEH65496.1\|407895_408396_-	xylose import ATP-binding protein XylG	W5SAS9	Pithovirus	1.9e-05	27.2

DBSCAN-SWA_4

446937 : 453586

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH65556.1\|446937_447159_+	23S rRNA (uracil-5-)-methyltransferase RumA	A0A1B0RXA1	Streptococcus_phage	1.4e-08	40.0
VEH65557.1\|447235_448054_+	GTP pyrophosphokinase	NA	NA	NA	NA
VEH65558.1\|448093_449464_+	GTP pyrophosphokinase	NA	NA	NA	NA
VEH65559.1\|449477_449834_+	diacylglycerol kinase	NA	NA	NA	NA
VEH65560.1\|450048_450660_-	HTH-type transcriptional regulator	A0A077SK06	Escherichia_phage	3.7e-48	52.3
VEH65561.1\|450836_450968_+	oxidoreductase	NA	NA	NA	NA
VEH65562.1\|451122_451566_+	oxidoreductase	A0A077SLF7	Escherichia_phage	8.1e-53	75.3
VEH65563.1\|451562_451739_+	oxidoreductase	A0A077SLF7	Escherichia_phage	1.2e-15	75.9
VEH65564.1\|451741_452515_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	A0A077SLJ7	Escherichia_phage	8.8e-71	55.3
VEH65565.1\|452511_452985_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
VEH65566.1\|453007_453586_+	putative aldolase class 2 protein	A0A077SK32	Escherichia_phage	2.7e-56	56.7

DBSCAN-SWA_5

461178 : 466847

Streptococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH65580.1\|461178_462309_+	glycerate kinase	W6LM47	Streptococcus_phage	1.1e-56	44.4
VEH65581.1\|462491_463250_-	tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	1.9e-30	33.3
VEH65582.1\|463403_463937_-	3-phenylpropionic acid transporter	NA	NA	NA	NA
VEH65583.1\|464160_464565_-	3-phenylpropionic acid transporter	NA	NA	NA	NA
VEH65584.1\|464564_465380_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.4e-21	32.1
VEH65585.1\|465447_465687_+	recombination associated protein	A0A0U1SXS1	Pseudomonas_phage	7.5e-05	32.9
VEH65586.1\|465673_466126_+	recombination-associated protein rdgC	S4TWL4	Salmonella_phage	1.2e-30	51.7
VEH65587.1\|466122_466353_+	recombination-associated protein rdgC	S4TWL4	Salmonella_phage	4.2e-13	49.3
VEH65588.1\|466403_466847_-	transmembrane protein	A0A2I7SAW6	Vibrio_phage	2.5e-38	56.0

DBSCAN-SWA_6

762967 : 800955

uncultured_Caudovirales_phage(52.0%)

head,tRNA,integrase,capsid,terminase,protease,tail,portal

attL 762525:762541|attR 767267:767283

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
762525:762541	attL	NA	NA	NA	NA
VEH66048.1\|762967_763729_+	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	4.8e-29	32.8
VEH66049.1\|763813_764212_+	protein-export membrane protein SecG	NA	NA	NA	NA
VEH66050.1\|764525_764834_+\|integrase	phage integrase family site-specific recombinase	H2BDA3	Pseudomonas_phage	2.6e-10	35.9
VEH66051.1\|764896_765328_+\|integrase	phage integrase family site-specific recombinase	A0A1V0E8G8	Vibrio_phage	2.3e-28	42.9
VEH66052.1\|765342_765729_+\|integrase	prophage integrase	A0A1V0E8G8	Vibrio_phage	5.3e-24	41.0
VEH66053.1\|765891_767682_-	phage/plasmid primase, P4 family, C-terminal domain	Q7M2A8	Enterobacteria_phage	9.2e-79	38.2
767267:767283	attR	NA	NA	NA	NA
VEH66054.1\|767665_768085_-	Uncharacterised protein	NA	NA	NA	NA
VEH66055.1\|768285_768501_-	Uncharacterised protein	NA	NA	NA	NA
VEH66056.1\|768487_768667_-	Uncharacterised protein	NA	NA	NA	NA
VEH66057.1\|768668_768881_-	Uncharacterised protein	NA	NA	NA	NA
VEH66058.1\|768873_769017_-	Uncharacterised protein	NA	NA	NA	NA
VEH66059.1\|769418_769568_-	DNA polymerase III subunit epsilon	A0A0R6PHP9	Moraxella_phage	1.1e-06	57.4
VEH66060.1\|769806_770271_-	DNA polymerase III subunit epsilon	A0A0R6PHP9	Moraxella_phage	9.4e-36	47.8
VEH66061.1\|770366_770591_-	Uncharacterised protein	NA	NA	NA	NA
VEH66062.1\|770988_771105_-	Uncharacterised protein	NA	NA	NA	NA
VEH66063.1\|772641_773058_-	Uncharacterised protein	NA	NA	NA	NA
VEH66064.1\|773082_773235_-	Uncharacterised protein	NA	NA	NA	NA
VEH66065.1\|773257_773707_-\|terminase	phage D3 terminase family protein	A0A2H4JB64	uncultured_Caudovirales_phage	1.4e-57	73.0
VEH66066.1\|773657_774113_-\|terminase	phage D3 terminase family protein	A0A2H4JB64	uncultured_Caudovirales_phage	2.9e-37	52.4
VEH66067.1\|774091_774376_-\|terminase	phage D3 terminase family protein	A0A2H4JB64	uncultured_Caudovirales_phage	3.0e-37	81.4
VEH66068.1\|774432_774894_-\|terminase	Phage terminase-like protein, large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	1.0e-42	66.1
VEH66069.1\|774984_775119_-\|terminase	Phage terminase, small subunit	A0A2H4JHS3	uncultured_Caudovirales_phage	5.1e-11	72.7
VEH66070.1\|775662_775905_-	Uncharacterised protein	A0A2H4JAS8	uncultured_Caudovirales_phage	8.4e-20	53.6
VEH66071.1\|775914_776229_-	uncharacterized phage protein (possible DNA packaging)	A0A2H4JD08	uncultured_Caudovirales_phage	4.3e-16	48.0
VEH66072.1\|776215_776572_-\|head,tail	Bacteriophage head-tail adaptor	A0A2H4JHA9	uncultured_Caudovirales_phage	2.2e-08	34.5
VEH66073.1\|776555_777179_-\|portal	phage portal protein, HK97 family	A0A2H4JFJ9	uncultured_Caudovirales_phage	3.3e-68	64.5
VEH66074.1\|777178_777793_-\|portal	phage portal protein, HK97 family	A0A2H4JFJ9	uncultured_Caudovirales_phage	2.0e-65	61.5
VEH66075.1\|777792_778290_-\|head,protease	phage prohead protease, HK97 family	A0A2H4JB68	uncultured_Caudovirales_phage	9.1e-45	66.2
VEH66076.1\|778407_778746_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.3e-39	80.4
VEH66077.1\|779147_779573_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.2e-24	51.2
VEH66078.1\|779606_779915_-\|tail	Phage minor tail protein U	NA	NA	NA	NA
VEH66079.1\|780638_782021_+	PTS system sucrose-specific transporter subunit IIBC	NA	NA	NA	NA
VEH66080.1\|782178_782478_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
VEH66081.1\|782477_782939_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
VEH66082.1\|783081_783171_-	Trp operon repressor	NA	NA	NA	NA
VEH66083.1\|783181_783481_-	putative solube lytic murein transglycosylase, SLT domain protein	NA	NA	NA	NA
VEH66084.1\|783459_783879_-	putative solube lytic murein transglycosylase, SLT domain protein	NA	NA	NA	NA
VEH66085.1\|783931_784372_-	putative solube lytic murein transglycosylase, SLT domain protein	NA	NA	NA	NA
VEH66086.1\|784513_784951_-	Uncharacterised protein	NA	NA	NA	NA
VEH66087.1\|785117_785378_-	Uncharacterised protein	NA	NA	NA	NA
VEH66088.1\|785600_785897_-	YciI-like domain protein	NA	NA	NA	NA
VEH66089.1\|785907_786390_-	acyl-CoA thioesterase domain protein	NA	NA	NA	NA
VEH66090.1\|786389_786791_-	intracellular septation protein A	NA	NA	NA	NA
VEH66091.1\|786757_786949_-	intracellular septation protein A	NA	NA	NA	NA
VEH66092.1\|787217_787697_-	Uncharacterised protein	NA	NA	NA	NA
VEH66093.1\|788059_788626_+	outer membrane protein OmpW	NA	NA	NA	NA
VEH66094.1\|788751_789222_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	7.8e-22	47.6
VEH66095.1\|789377_789539_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	NA	NA	NA
VEH66096.1\|789502_790414_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	2.9e-57	45.1
VEH66097.1\|790553_790841_-	Protein of uncharacterised function (DUF406)	NA	NA	NA	NA
VEH66098.1\|791044_792370_+	outer membrane protein	NA	NA	NA	NA
VEH66099.1\|792438_792978_+	methylated-DNA--protein-cysteine methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	8.1e-23	42.7
VEH66100.1\|792974_793637_+	DNA mismatch repair protein MutH	NA	NA	NA	NA
VEH66101.1\|793701_794319_-	membrane protein, MarC family	NA	NA	NA	NA
VEH66102.1\|794397_795687_-\|tRNA	tRNA(Ile)-lysidine synthase	NA	NA	NA	NA
VEH66103.1\|795686_796214_-	pyridoxamine kinase	NA	NA	NA	NA
VEH66104.1\|796213_796552_-	pyridoxamine kinase	NA	NA	NA	NA
VEH66105.1\|796707_797655_-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
VEH66106.1\|797745_798054_-	high-affinity zinc uptake system membrane protein ZnuB	NA	NA	NA	NA
VEH66107.1\|798041_798530_-	high-affinity zinc uptake system membrane protein ZnuB	NA	NA	NA	NA
VEH66108.1\|798529_799366_-	zinc import ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	2.2e-14	26.8
VEH66109.1\|799509_800955_+\|protease	metalloprotease	A0A2K9VGT1	Pontimonas_phage	5.0e-19	46.9

DBSCAN-SWA_7

831044 : 838727

unidentified_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH66161.1\|831044_832259_+	cysteine desulfurase IscS	H7BUW1	unidentified_phage	7.4e-32	36.1
VEH66162.1\|832326_832446_+	iron-sulfur cluster assembly scaffold IscU	NA	NA	NA	NA
VEH66163.1\|832415_832709_+	iron-sulfur cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	3.4e-39	81.9
VEH66164.1\|832762_832942_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	5.4e-08	57.1
VEH66165.1\|832938_833085_+	iron-sulfur cluster assembly protein IscA	NA	NA	NA	NA
VEH66166.1\|833102_833621_+	iron-sulfur cluster assembly co-chaperone protein HscB	NA	NA	NA	NA
VEH66167.1\|833665_834355_+	Protein of uncharacterised function DUF2625	NA	NA	NA	NA
VEH66168.1\|834381_834585_+	iron-sulfur cluster assembly chaperone protein HscA	NA	NA	NA	NA
VEH66169.1\|834575_835262_+	iron-sulfur cluster assembly chaperone protein HscA	F2Y2E1	Organic_Lake_phycodnavirus	1.8e-46	44.5
VEH66170.1\|835258_835675_+	iron-sulfur cluster assembly chaperone protein HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.5e-21	44.5
VEH66171.1\|835671_836238_+	iron-sulfur cluster assembly chaperone protein HscA	A0A2H4UVL6	Bodo_saltans_virus	1.2e-13	33.9
VEH66172.1\|836324_836666_+	ferredoxin, 2Fe-2S type, ISC system	NA	NA	NA	NA
VEH66173.1\|836665_836860_+	FeS assembly protein IscX	NA	NA	NA	NA
VEH66174.1\|836965_838060_-	DNA replication and repair protein RecF	NA	NA	NA	NA
VEH66175.1\|838061_838727_-	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	5.1e-27	32.6

DBSCAN-SWA_8

1119052 : 1188596

122

Mannheimia_phage(49.09%)

tRNA,holin,integrase,capsid,terminase,protease,tail

attL 1175921:1175941|attR 1189813:1189833

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH66635.1\|1119052_1119325_-\|integrase	Phage integrase family	A0A0M3LQJ3	Mannheimia_phage	4.2e-28	70.5
VEH66636.1\|1119378_1119780_-	Uncharacterised protein	A0A0M3LQJ3	Mannheimia_phage	4.0e-43	61.1
VEH66637.1\|1119785_1120082_-\|integrase	Bacteriophage lambda integrase, N-terminal domain	A0A0M3LQJ3	Mannheimia_phage	4.5e-23	62.9
VEH66638.1\|1120331_1120538_-	Uncharacterised protein	NA	NA	NA	NA
VEH66639.1\|1120530_1120689_-	Uncharacterised protein	NA	NA	NA	NA
VEH66640.1\|1120707_1121199_-	Uncharacterised protein	A0A0M3LQH0	Mannheimia_phage	9.9e-68	71.5
VEH66641.1\|1121433_1121940_-	pyruvate kinase	Q7Y5X4	Haemophilus_phage	1.5e-10	32.8
VEH66642.1\|1122083_1122665_-	Protein of uncharacterised function (DUF551)	A0A0M3LS47	Mannheimia_phage	7.5e-06	44.0
VEH66643.1\|1122628_1122895_-	Uncharacterised protein	NA	NA	NA	NA
VEH66644.1\|1122943_1123261_-	Uncharacterised protein	I2GUJ4	Acinetobacter_phage	1.8e-09	39.0
VEH66645.1\|1123266_1124061_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	A0A0M3LPL3	Mannheimia_phage	5.6e-28	89.9
VEH66646.1\|1124111_1124987_-	AP2 domain	NA	NA	NA	NA
VEH66647.1\|1125063_1125711_-	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	4.4e-92	76.5
VEH66648.1\|1125720_1125831_-	Uncharacterised protein	NA	NA	NA	NA
VEH66649.1\|1125915_1126593_-	putative anti-repressor protein	D0UIK6	Aggregatibacter_phage	5.6e-45	39.4
VEH66650.1\|1126901_1127099_-	YcfA-like protein	A0A0M4RCZ9	Salmonella_phage	1.2e-13	62.5
VEH66651.1\|1127352_1127790_-	Uncharacterised protein	A0A0M4R2Z9	Salmonella_phage	1.6e-21	42.2
VEH66652.1\|1128127_1128361_-	Uncharacterised protein	NA	NA	NA	NA
VEH66653.1\|1128323_1128554_-	Uncharacterised protein	NA	NA	NA	NA
VEH66654.1\|1128878_1129817_-	phage recombinase	A0A2H4JAZ0	uncultured_Caudovirales_phage	7.1e-83	66.1
VEH66655.1\|1129826_1130144_-	Uncharacterised protein	NA	NA	NA	NA
VEH66656.1\|1130140_1130626_-	Uncharacterised protein	A0A0M3LSK4	Mannheimia_phage	2.1e-22	43.9
VEH66657.1\|1130622_1131030_-	Uncharacterised protein	NA	NA	NA	NA
VEH66658.1\|1131278_1131467_-	Uncharacterised protein	NA	NA	NA	NA
VEH66659.1\|1131463_1131565_-	Uncharacterised protein	NA	NA	NA	NA
VEH66660.1\|1131872_1132103_-	Uncharacterised protein	A0A0M3LQL0	Mannheimia_phage	5.0e-22	71.0
VEH66661.1\|1132284_1132542_-	Uncharacterised protein	NA	NA	NA	NA
VEH66662.1\|1132606_1133020_-	Uncharacterised protein	NA	NA	NA	NA
VEH66663.1\|1133033_1133174_-	Uncharacterised protein	NA	NA	NA	NA
VEH66664.1\|1133170_1133482_-	Uncharacterised protein	NA	NA	NA	NA
VEH66665.1\|1133478_1134018_-	Uncharacterised protein	NA	NA	NA	NA
VEH66666.1\|1134111_1134879_-	putative bacteriophage transcriptional regulator	Q76H56	Enterobacteria_phage	1.5e-17	33.3
VEH66667.1\|1135006_1135192_+	Cro	A0A2H4J1L8	uncultured_Caudovirales_phage	5.4e-11	54.1
VEH66668.1\|1135240_1135648_+	Uncharacterised protein	NA	NA	NA	NA
VEH66669.1\|1135746_1135995_+	Uncharacterised protein	A0A0M3LR73	Mannheimia_phage	2.3e-17	67.6
VEH66670.1\|1135981_1136098_+	Uncharacterised protein	NA	NA	NA	NA
VEH66671.1\|1136084_1136954_+	Uncharacterised protein	Q7Y5W1	Haemophilus_phage	6.3e-41	36.9
VEH66672.1\|1136953_1137370_+	putative replicative DNA helicase	A0A0M3LQC0	Mannheimia_phage	1.6e-34	56.5
VEH66673.1\|1137366_1138323_+	putative replicative DNA helicase	A0A0M3LQC0	Mannheimia_phage	2.4e-86	51.7
VEH66674.1\|1138369_1138858_+	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	1.5e-60	65.1
VEH66675.1\|1138850_1139081_+	Uncharacterised protein	NA	NA	NA	NA
VEH66676.1\|1139110_1139563_+	putative bacteriophage protein	A0A0M3LR84	Mannheimia_phage	3.9e-63	78.4
VEH66677.1\|1139588_1139798_+	Uncharacterised protein	NA	NA	NA	NA
VEH66678.1\|1139797_1140088_+	82 prophage-derived uncharacterized protein ybcO	A0A0M3LQ97	Mannheimia_phage	1.4e-45	92.4
VEH66679.1\|1140084_1140444_+	Crossover junction endodeoxyribonuclease rusA	A0A0M3LPZ2	Mannheimia_phage	3.2e-23	46.4
VEH66680.1\|1140440_1140806_+	Phage antitermination protein Q	NA	NA	NA	NA
VEH66681.1\|1140922_1141129_+	Uncharacterized conserved protein	NA	NA	NA	NA
VEH66682.1\|1141161_1141314_+	Uncharacterized conserved protein	A0A1S5SAB0	Streptococcus_phage	3.6e-05	52.1
VEH66683.1\|1141313_1142075_+	Uncharacterized conserved protein	NA	NA	NA	NA
VEH66684.1\|1142384_1143038_+	KilA domain-containing protein	A0A0M3LQ72	Mannheimia_phage	5.6e-26	47.5
VEH66685.1\|1143326_1143596_+	Uncharacterised protein	NA	NA	NA	NA
VEH66686.1\|1143654_1143840_+	Uncharacterised protein	NA	NA	NA	NA
VEH66687.1\|1143843_1144209_-	Uncharacterised protein	NA	NA	NA	NA
VEH66688.1\|1144312_1144675_+\|holin	phage holin, lambda family	A0A0M3LNX1	Mannheimia_phage	1.1e-36	62.4
VEH66689.1\|1144658_1145102_+	lysozyme	A0A068CDE9	Acinetobacter_phage	8.7e-39	56.9
VEH66690.1\|1145094_1145607_+	Protein required for the initiation of cell division	Q7Y5U9	Haemophilus_phage	4.3e-05	34.9
VEH66691.1\|1145734_1146217_+	Protein of uncharacterised function (DUF1441)	K7PJY2	Enterobacterial_phage	4.0e-37	50.9
VEH66692.1\|1146216_1147242_+\|terminase	bacteriophage terminase large subunit	K7PH52	Enterobacterial_phage	4.1e-132	69.6
VEH66693.1\|1147199_1148324_+\|terminase	bacteriophage terminase large subunit	A5LH27	Enterobacteria_phage	1.1e-125	64.2
VEH66694.1\|1148292_1148550_+	Uncharacterised protein	NA	NA	NA	NA
VEH66695.1\|1148549_1149455_+\|capsid	bacteriophage capsid protein	K7PHM5	Enterobacterial_phage	4.9e-81	56.1
VEH66696.1\|1149451_1150624_+\|capsid	bacteriophage capsid protein	Q8VNN6	Enterobacteria_phage	7.1e-64	65.4
VEH66697.1\|1150596_1151073_+\|protease	putative Clp-like protease	A0A1B0YZU0	Pseudomonas_phage	6.5e-16	35.3
VEH66698.1\|1151069_1151648_+\|protease	putative Clp-like protease	A0A1W6JT88	Pseudomonas_phage	5.8e-59	67.1
VEH66699.1\|1151647_1152031_+\|protease	putative Clp-like protease	A5LH30	Enterobacteria_phage	2.3e-27	52.3
VEH66700.1\|1152045_1152420_+	Uncharacterized conserved protein	S5MQJ5	Escherichia_phage	2.6e-12	41.8
VEH66701.1\|1152534_1152711_+	Uncharacterised protein	NA	NA	NA	NA
VEH66702.1\|1152931_1153237_+\|tail	putative tail component of prophage	K7PMB7	Enterobacterial_phage	2.1e-12	42.0
VEH66703.1\|1153267_1153648_+\|tail	putative minor tail protein	NA	NA	NA	NA
VEH66704.1\|1153586_1154156_+	Uncharacterised protein	NA	NA	NA	NA
VEH66705.1\|1154412_1154574_+	Uncharacterised protein	NA	NA	NA	NA
VEH66706.1\|1154570_1154981_+	Uncharacterised protein	NA	NA	NA	NA
VEH66707.1\|1155025_1155253_+	Uncharacterised protein	NA	NA	NA	NA
VEH66708.1\|1155322_1155619_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEH66709.1\|1155687_1155990_+	Antitoxin HigA	NA	NA	NA	NA
VEH66710.1\|1156022_1156271_+	Uncharacterised protein	NA	NA	NA	NA
VEH66711.1\|1156325_1158440_+\|tail	Phage-related minor tail protein	B7SE05	Pseudomonas_virus	3.6e-50	44.0
VEH66712.1\|1158445_1159015_+\|tail	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	NA	NA	NA	NA
VEH66713.1\|1159014_1159599_+\|tail	Phage-related minor tail protein	G5DMI4	Enterobacter_virus	1.9e-17	36.5
VEH66714.1\|1159733_1159841_+	Uncharacterised protein	NA	NA	NA	NA
VEH66715.1\|1159843_1160095_+	Gifsy-1 prophage VmtM	NA	NA	NA	NA
VEH66716.1\|1160168_1160894_+\|tail	Phage-related minor tail protein L	A0A0M3LSQ5	Mannheimia_phage	3.7e-71	62.5
VEH66717.1\|1160886_1161624_+	(3R)-hydroxymyristoyl-ACP dehydratase	A0A0M3LQI5	Mannheimia_phage	8.9e-89	65.4
VEH66718.1\|1161869_1162031_+	Uncharacterised protein	A0A0M3LPX2	Mannheimia_phage	5.2e-10	64.0
VEH66719.1\|1162172_1162358_+	Uncharacterised protein	NA	NA	NA	NA
VEH66720.1\|1162510_1162753_+	Uncharacterised protein	NA	NA	NA	NA
VEH66721.1\|1163369_1164035_+	KilA domain-containing protein	D0UIK6	Aggregatibacter_phage	5.3e-32	60.7
VEH66722.1\|1164162_1164693_+	Uncharacterised protein	NA	NA	NA	NA
VEH66723.1\|1164784_1165141_+\|tail	Phage-related protein, tail component	A0A0M3LQ39	Mannheimia_phage	6.5e-29	57.3
VEH66724.1\|1165137_1165413_+\|tail	Phage-related protein, tail component	A0A0M3LQ39	Mannheimia_phage	3.4e-25	75.3
VEH66725.1\|1165663_1166917_+	Uncharacterised protein	A0A0M3LR06	Mannheimia_phage	3.9e-137	59.3
VEH66726.1\|1166919_1168500_+	Uncharacterised protein	A0A0M3LQ61	Mannheimia_phage	4.3e-149	58.1
VEH66727.1\|1168490_1168850_+	Uncharacterised protein	NA	NA	NA	NA
VEH66728.1\|1168885_1169425_+	Uncharacterised protein	A0A0M3LR06	Mannheimia_phage	1.3e-07	64.4
VEH66729.1\|1169418_1169817_+	Uncharacterised protein	NA	NA	NA	NA
VEH66730.1\|1169913_1170207_+	Uncharacterised protein	A0A0M3LS64	Mannheimia_phage	7.0e-37	78.4
VEH66731.1\|1170245_1170593_+	Uncharacterised protein	NA	NA	NA	NA
VEH66732.1\|1171030_1171333_+	Uncharacterised protein	NA	NA	NA	NA
VEH66733.1\|1171505_1171670_+\|tRNA	tRNA pseudouridine synthase A	NA	NA	NA	NA
VEH66734.1\|1171716_1172352_+\|tRNA	tRNA pseudouridine synthase A	NA	NA	NA	NA
VEH66735.1\|1172436_1172964_+	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA
VEH66736.1\|1172963_1173356_+	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA
VEH66737.1\|1173342_1173939_+	folylpolyglutamate synthase	NA	NA	NA	NA
VEH66738.1\|1173935_1174661_+	folylpolyglutamate synthase	NA	NA	NA	NA
VEH66739.1\|1174867_1175029_-	YbhB/YbcL family protein	NA	NA	NA	NA
VEH66740.1\|1175210_1175366_-	YbhB/YbcL family protein	NA	NA	NA	NA
1175921:1175941	attL	NA	NA	NA	NA
VEH66741.1\|1176820_1176985_-	Protein of uncharacterised function (DUF497)	NA	NA	NA	NA
VEH66742.1\|1177515_1179708_-	Superfamily II helicase and inactivated derivatives	A0A1W6JPG0	Morganella_phage	2.9e-127	41.1
VEH66743.1\|1179700_1180507_-	Uncharacterised protein	NA	NA	NA	NA
VEH66744.1\|1180499_1180721_-	Uncharacterised protein	NA	NA	NA	NA
VEH66745.1\|1180713_1180944_-	Uncharacterised protein	NA	NA	NA	NA
VEH66746.1\|1181320_1181560_-	Uncharacterised protein	NA	NA	NA	NA
VEH66747.1\|1183109_1183580_-	Phage anti-repressor protein	NA	NA	NA	NA
VEH66748.1\|1183766_1183880_-	Uncharacterised protein	NA	NA	NA	NA
VEH66749.1\|1183891_1184569_-	putative phage regulatory protein Rha family	A0A0H4IQ68	Shigella_phage	2.4e-27	38.4
VEH66750.1\|1184990_1185389_-	Uncharacterised protein	NA	NA	NA	NA
VEH66751.1\|1185393_1185624_-	Uncharacterised protein	NA	NA	NA	NA
VEH66752.1\|1185620_1185788_-	Uncharacterised protein	NA	NA	NA	NA
VEH66753.1\|1185969_1186164_-	Uncharacterised protein	NA	NA	NA	NA
VEH66754.1\|1186301_1186568_-	Uncharacterised protein	NA	NA	NA	NA
VEH66755.1\|1186577_1186817_-	Predicted transcriptional regulator	NA	NA	NA	NA
VEH66756.1\|1188344_1188596_-\|integrase	prophage integrase	A0A1V0E8G8	Vibrio_phage	2.1e-13	47.3
1189813:1189833	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1398788 : 1439379

Haemophilus_phage(59.57%)

head,tRNA,protease,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH67098.1\|1398788_1399409_-\|protease	putative Lon protease	NA	NA	NA	NA
VEH67099.1\|1399799_1400318_-	putative transcriptional regulator	F6MII3	Haemophilus_phage	7.1e-24	38.2
VEH67100.1\|1400599_1400863_+	protein Ner	F6MII4	Haemophilus_phage	1.1e-28	72.4
VEH67101.1\|1400989_1401598_+	Uncharacterised protein	F6MII5	Haemophilus_phage	2.2e-48	53.2
VEH67102.1\|1401573_1402644_+\|transposase	Mu transposase, C-terminal	F6MII5	Haemophilus_phage	3.3e-169	80.5
VEH67103.1\|1402588_1402819_+	Uncharacterised protein	NA	NA	NA	NA
VEH67104.1\|1402840_1403053_+	Uncharacterised protein	NA	NA	NA	NA
VEH67105.1\|1403042_1403399_-	Uncharacterised protein	NA	NA	NA	NA
VEH67106.1\|1403449_1403914_+	Uncharacterised protein	A0A0M3LP72	Mannheimia_phage	2.2e-40	56.6
VEH67107.1\|1403943_1404330_+	Uncharacterised protein	A0A0M3LP72	Mannheimia_phage	1.1e-40	68.5
VEH67108.1\|1404340_1404592_+	Uncharacterised protein	NA	NA	NA	NA
VEH67109.1\|1404602_1404812_+	Uncharacterised protein	NA	NA	NA	NA
VEH67110.1\|1404821_1405013_+	Uncharacterised protein	F6MII8	Haemophilus_phage	5.4e-14	65.1
VEH67111.1\|1405128_1405635_+	Protein of uncharacterised function (DUF3164)	A0A0M3LQ92	Mannheimia_phage	1.4e-56	63.0
VEH67112.1\|1405636_1405831_+	Uncharacterised protein	NA	NA	NA	NA
VEH67113.1\|1405903_1406074_+	Uncharacterised protein	NA	NA	NA	NA
VEH67114.1\|1406339_1406510_+	Uncharacterised protein	NA	NA	NA	NA
VEH67115.1\|1406512_1406797_+	Uncharacterised protein	NA	NA	NA	NA
VEH67116.1\|1407208_1407595_+	Uncharacterised protein	NA	NA	NA	NA
VEH67117.1\|1407703_1408189_+	Uncharacterised protein	A0A2H4JFV8	uncultured_Caudovirales_phage	7.1e-26	41.2
VEH67118.1\|1408285_1408549_+	Uncharacterised protein	NA	NA	NA	NA
VEH67119.1\|1409029_1409212_+	Uncharacterised protein	NA	NA	NA	NA
VEH67120.1\|1409237_1409435_+	Uncharacterised protein	NA	NA	NA	NA
VEH67121.1\|1409560_1409713_+	Predicted lysozyme (DUF847)	A0A0M3LSH2	Mannheimia_phage	5.4e-09	83.3
VEH67122.1\|1409716_1410061_+	Predicted Peptidoglycan domain	A0A0M3LSH2	Mannheimia_phage	4.0e-23	64.6
VEH67123.1\|1410215_1410431_+	Protein of uncharacterised function (DUF2644)	F6MIK0	Haemophilus_phage	1.6e-09	58.9
VEH67124.1\|1410516_1410906_+	Protein of uncharacterised function (DUF2681)	F6MIK2	Haemophilus_phage	1.2e-07	54.4
VEH67125.1\|1410895_1411060_+	Uncharacterised protein	NA	NA	NA	NA
VEH67126.1\|1411144_1411378_+	Uncharacterised protein	NA	NA	NA	NA
VEH67127.1\|1411379_1411679_+	Protein of uncharacterised function (DUF1804)	F6MIK6	Haemophilus_phage	6.9e-24	56.7
VEH67128.1\|1411675_1411882_+	Protein of uncharacterised function (DUF1804)	F6MIK6	Haemophilus_phage	1.9e-12	51.5
VEH67129.1\|1411878_1411983_+	Uncharacterised protein	NA	NA	NA	NA
VEH67130.1\|1412348_1413611_+	phage uncharacterized protein, C-terminal domain	B7SDN0	Haemophilus_phage	6.7e-201	83.9
VEH67131.1\|1413621_1415181_+	Mu-like prophage protein gp29	B7SDN1	Haemophilus_phage	1.2e-186	65.8
VEH67132.1\|1415247_1415535_+	Uncharacterised protein	A0A0M3LSH7	Mannheimia_phage	8.7e-16	57.5
VEH67133.1\|1415625_1416453_+\|head	phage head morphogenesis protein, SPP1 gp7 family	A0A0M3LSH7	Mannheimia_phage	4.6e-94	63.8
VEH67134.1\|1416607_1416814_+	Mu-like prophage protein gpG	NA	NA	NA	NA
VEH67135.1\|1416860_1417058_+	Mu-like prophage protein gpG	B7SDN8	Haemophilus_phage	9.5e-22	76.9
VEH67136.1\|1417343_1417673_+	Mu-like prophage I protein	NA	NA	NA	NA
VEH67137.1\|1418004_1418397_+	Mu-like prophage I protein	B7SDN9	Haemophilus_phage	2.8e-17	43.4
VEH67138.1\|1418462_1418693_+\|head	Mu-like prophage major head subunit gpT	A0A0M3LQ11	Mannheimia_phage	1.2e-15	67.3
VEH67139.1\|1418820_1419303_+\|head	Mu-like prophage major head subunit gpT	B7SDP1	Haemophilus_phage	1.0e-64	74.4
VEH67140.1\|1419559_1419724_+	Uncharacterised protein	B7SDP3	Haemophilus_phage	1.5e-09	55.8
VEH67141.1\|1419727_1420435_+	Mu-like prophage protein gp36	B7SDP4	Haemophilus_phage	2.7e-34	62.8
VEH67142.1\|1420771_1421206_+	Uncharacterised protein	NA	NA	NA	NA
VEH67143.1\|1421208_1421337_+	Uncharacterised protein	NA	NA	NA	NA
VEH67144.1\|1421381_1421612_+\|tail	Mu-like prophage tail sheath protein gpL	A0A0M3LQC3	Mannheimia_phage	2.6e-15	63.5
VEH67145.1\|1421611_1421749_+\|tail	Mu-like prophage tail sheath protein gpL	A0A0M3LQC3	Mannheimia_phage	2.1e-07	62.2
VEH67146.1\|1421748_1422150_+\|tail	Mu-like prophage tail sheath protein gpL	B7SDP8	Haemophilus_phage	8.1e-28	52.8
VEH67147.1\|1422137_1422794_+\|tail	Mu-like prophage tail sheath protein gpL	B7SDP8	Haemophilus_phage	5.3e-77	65.6
VEH67148.1\|1422803_1423100_+	Uncharacterised protein	A0A0M3LRV6	Mannheimia_phage	3.0e-27	64.8
VEH67149.1\|1423173_1423515_+	Uncharacterised protein	F6MIK9	Haemophilus_phage	1.7e-13	40.6
VEH67150.1\|1423562_1423736_+	Uncharacterised protein	NA	NA	NA	NA
VEH67151.1\|1423781_1424312_+	Uncharacterised protein	A0A0M3LPB6	Mannheimia_phage	1.4e-14	54.3
VEH67152.1\|1424308_1424557_+	Uncharacterised protein	NA	NA	NA	NA
VEH67153.1\|1424949_1425063_+	Uncharacterised protein	NA	NA	NA	NA
VEH67154.1\|1425074_1425428_+	Uncharacterised protein	NA	NA	NA	NA
VEH67155.1\|1425472_1425631_+	Uncharacterised protein	NA	NA	NA	NA
VEH67156.1\|1425786_1426137_+	Uncharacterised protein	NA	NA	NA	NA
VEH67157.1\|1426139_1426355_+	Mu-like prophage DNA circulation protein	A0A0M3LQ21	Mannheimia_phage	1.0e-21	71.0
VEH67158.1\|1426357_1426483_+	Mu-like prophage DNA circulation protein	F6MIL2	Haemophilus_phage	4.2e-07	56.1
VEH67159.1\|1426678_1426957_+	Uncharacterised protein	NA	NA	NA	NA
VEH67160.1\|1427006_1427210_+	Uncharacterised protein	NA	NA	NA	NA
VEH67161.1\|1427206_1427485_+	Mu-like prophage DNA circulation protein	F6MIL2	Haemophilus_phage	9.9e-25	62.1
VEH67162.1\|1427474_1428299_+\|tail	Mu-like prophage tail protein gpP	F6MIL3	Haemophilus_phage	1.8e-101	69.2
VEH67163.1\|1428420_1428654_+\|tail	Mu-like prophage tail protein gpP	F6MIL3	Haemophilus_phage	3.2e-08	82.4
VEH67164.1\|1428601_1429237_+	Mu-like prophage protein gp45	A0A0M3LPA3	Mannheimia_phage	1.0e-64	58.7
VEH67165.1\|1429305_1429656_+	Phage protein GP46	A0A0M3LQK5	Mannheimia_phage	2.1e-43	73.3
VEH67166.1\|1429670_1430735_+	Uncharacterized homolog of phage Mu protein gp47	F6MIL6	Haemophilus_phage	2.3e-125	65.5
VEH67167.1\|1430734_1431325_+	Uncharacterized protein conserved in bacteria (DUF2313)	F6MIL7	Haemophilus_phage	5.1e-71	68.3
VEH67168.1\|1431326_1431803_+\|tail	Phage tail fibre repeat	NA	NA	NA	NA
VEH67169.1\|1431912_1432560_+	Uncharacterised protein	NA	NA	NA	NA
VEH67170.1\|1432937_1433216_+	Uncharacterised protein	D0UIH3	Aggregatibacter_phage	1.4e-18	51.1
VEH67171.1\|1433215_1433530_+	Uncharacterised protein	Q7Y5S1	Haemophilus_phage	1.6e-26	62.4
VEH67172.1\|1433475_1433823_+	Uncharacterised protein	A0A0R6PGZ9	Moraxella_phage	2.6e-30	54.8
VEH67173.1\|1433815_1434295_+	Uncharacterised protein	F6MIM0	Haemophilus_phage	4.1e-50	56.0
VEH67174.1\|1434601_1434751_+	Uncharacterised protein	NA	NA	NA	NA
VEH67175.1\|1434867_1435365_+	Uncharacterised protein	U4KJA1	Streptococcus_phage	4.7e-41	48.3
VEH67176.1\|1435398_1435995_+	Uncharacterised protein	F6MIM2	Haemophilus_phage	1.1e-60	57.4
VEH67177.1\|1436242_1436467_-\|protease	putative Lon protease	NA	NA	NA	NA
VEH67178.1\|1436557_1437490_-\|protease	putative Lon protease	NA	NA	NA	NA
VEH67179.1\|1437618_1438065_+	Ter macrodomain organiser, MatS-binding protein, MatP	NA	NA	NA	NA
VEH67180.1\|1438149_1438293_-	Cold shock protein	NA	NA	NA	NA
VEH67181.1\|1438443_1438761_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEH67182.1\|1438849_1439134_-\|tRNA	tRNA pseudouridine synthase C	NA	NA	NA	NA
VEH67183.1\|1439130_1439379_-\|tRNA	tRNA pseudouridine synthase C	NA	NA	NA	NA

DBSCAN-SWA_10

1497900 : 1508825

Mannheimia_phage(36.36%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH67287.1\|1497900_1499433_-	Uncharacterised protein	A0A2I7RSU1	Vibrio_phage	2.4e-64	33.1
VEH67288.1\|1499410_1499941_-	Uncharacterised protein	NA	NA	NA	NA
VEH67289.1\|1499930_1500203_-	Uncharacterised protein	NA	NA	NA	NA
VEH67290.1\|1500639_1501077_-	Phage antitermination protein Q	NA	NA	NA	NA
VEH67291.1\|1501069_1501627_-	Bacteriophage Lambda NinG protein	D0UIK8	Aggregatibacter_phage	8.3e-63	63.9
VEH67292.1\|1501623_1502049_-	putative recombination protein NinB	Q7Y5V7	Haemophilus_phage	7.2e-59	77.3
VEH67293.1\|1502048_1502270_-	putative replicative DNA helicase	I6R0N4	Salmonella_phage	4.2e-10	49.4
VEH67294.1\|1502335_1502752_-	putative replicative DNA helicase	A0A0M3LQC0	Mannheimia_phage	1.1e-24	45.8
VEH67295.1\|1502700_1503414_-	putative replicative DNA helicase	A0A0M3LQC0	Mannheimia_phage	1.7e-60	51.8
VEH67296.1\|1503413_1503566_-	Uncharacterised protein	NA	NA	NA	NA
VEH67297.1\|1503522_1503762_-	Uncharacterised protein	NA	NA	NA	NA
VEH67298.1\|1503713_1504301_-	Uncharacterised protein	Q7Y5W1	Haemophilus_phage	3.3e-25	50.9
VEH67299.1\|1504287_1504386_-	Uncharacterised protein	NA	NA	NA	NA
VEH67300.1\|1504372_1504558_-	Uncharacterised protein	A0A0M3LR73	Mannheimia_phage	7.8e-10	63.6
VEH67301.1\|1504779_1505178_+	Uncharacterised protein	NA	NA	NA	NA
VEH67302.1\|1505287_1505446_-	Uncharacterised protein	Q7Y5W3	Haemophilus_phage	2.3e-10	64.6
VEH67303.1\|1505466_1505667_-	Uncharacterized protein conserved in bacteria, prophage-related	NA	NA	NA	NA
VEH67304.1\|1505817_1506483_+	putative bacteriophage transcriptional regulator	A0A0M3LQ62	Mannheimia_phage	5.8e-47	60.5
VEH67305.1\|1506601_1506799_+	Uncharacterised protein	NA	NA	NA	NA
VEH67306.1\|1506798_1507305_+	Uncharacterised protein	NA	NA	NA	NA
VEH67307.1\|1507539_1507968_+	Uncharacterised protein	NA	NA	NA	NA
VEH67308.1\|1508011_1508317_+	Site-specific DNA methylase	NA	NA	NA	NA
VEH67309.1\|1508486_1508825_+	Site-specific DNA methylase	A0A2K9R7J9	Dishui_lake_phycodnavirus	8.7e-07	26.4

DBSCAN-SWA_11

1586044 : 1591650

uncultured_Mediterranean_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH67438.1\|1586044_1587436_+\|protease	periplasmic serine protease do/hhoA-like protein	A0A1B1IT49	uncultured_Mediterranean_phage	2.5e-23	30.0
VEH67439.1\|1587582_1587999_+	DNA gyrase subunit A	A0A172JHV7	Bacillus_phage	1.2e-26	47.9
VEH67440.1\|1588043_1589756_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	1.0e-58	29.6
VEH67441.1\|1589764_1590223_+	DNA gyrase subunit A	NA	NA	NA	NA
VEH67442.1\|1590628_1591018_+	7-cyano-7-deazaguanine synthase	M1PKZ7	Cellulophaga_phage	9.4e-13	53.3
VEH67443.1\|1591067_1591310_+	7-cyano-7-deazaguanine synthase	A5A3S4	Burkholderia_phage	3.2e-11	42.0
VEH67444.1\|1591302_1591650_+	6-carboxy-5,6,7,8-tetrahydropterin synthase	A0A1U9WRB3	Streptococcus_virus	8.1e-16	41.8

DBSCAN-SWA_12

1666342 : 1672723

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH67568.1\|1666342_1667164_+	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	4.7e-54	44.5
VEH67569.1\|1667160_1667595_+	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	4.4e-27	50.4
VEH67570.1\|1667659_1668337_+	Uncharacterised protein	NA	NA	NA	NA
VEH67571.1\|1668363_1669020_-	catalase	A0A2K9L572	Tupanvirus	1.3e-19	47.3
VEH67572.1\|1668995_1669883_-	catalase	A0A2K9L0T1	Tupanvirus	2.7e-71	47.2
VEH67573.1\|1670048_1670651_-	DNA polymerase III subunit gamma/tau	NA	NA	NA	NA
VEH67574.1\|1670650_1672168_-	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	1.9e-45	37.1
VEH67575.1\|1672180_1672723_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	8.7e-25	42.5

DBSCAN-SWA_13

1776674 : 1783379

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH67735.1\|1776674_1777397_-	bifunctional protein HldE	A0A1B1IUK5	uncultured_Mediterranean_phage	3.5e-21	33.1
VEH67736.1\|1777393_1778104_-	bifunctional protein HldE	E3SJ85	Synechococcus_phage	5.3e-06	27.5
VEH67737.1\|1778202_1778895_+	lipid A biosynthesis lauroyl acyltransferase	A0A1W6JP29	Morganella_phage	4.2e-40	43.2
VEH67738.1\|1779197_1779440_+	DNA topoisomerase IV subunit B	NA	NA	NA	NA
VEH67739.1\|1779385_1780804_+	DNA topoisomerase IV subunit B	A0A172JHT4	Bacillus_phage	8.9e-69	34.5
VEH67740.1\|1780913_1781108_+	DNA topoisomerase IV subunit B	NA	NA	NA	NA
VEH67741.1\|1781121_1782117_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	1.9e-62	40.1
VEH67742.1\|1782119_1783379_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	2.4e-17	31.8

DBSCAN-SWA_14

2092593 : 2098960

Vibrio_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH68211.1\|2092593_2092860_-	ribonuclease 3	A0A2P0VNZ5	Tetraselmis_virus	6.9e-07	52.8
VEH68212.1\|2092922_2093315_-	signal peptidase I	NA	NA	NA	NA
VEH68213.1\|2093495_2093840_-	signal peptidase I	NA	NA	NA	NA
VEH68214.1\|2093999_2094131_-	GTP-binding protein lepA	NA	NA	NA	NA
VEH68215.1\|2094118_2094379_-	GTP-binding protein lepA	NA	NA	NA	NA
VEH68216.1\|2094348_2094630_-	GTP-binding protein lepA	NA	NA	NA	NA
VEH68217.1\|2094605_2095730_-	GTP-binding protein lepA	A0A2K9L2P9	Tupanvirus	4.0e-24	42.6
VEH68218.1\|2095826_2096210_-	autonomous glycyl radical cofactor	A0A1W5N098	Cronobacter_phage	2.2e-30	68.3
VEH68219.1\|2096442_2096961_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	9.5e-37	46.8
VEH68220.1\|2097188_2097557_+	protein YyaQ	NA	NA	NA	NA
VEH68221.1\|2097726_2098101_-\|tRNA	tRNA-specific adenosine deaminase	NA	NA	NA	NA
VEH68222.1\|2098110_2098482_-	thymidylate synthase	H9EB68	Vibrio_phage	1.4e-53	79.7
VEH68223.1\|2098436_2098652_-	thymidylate synthase	K7R9G0	Vibrio_phage	1.0e-13	72.9
VEH68224.1\|2098774_2098960_-	thymidylate synthase	H9EB68	Vibrio_phage	1.0e-17	74.5

DBSCAN-SWA_15

2196848 : 2203514

uncultured_Mediterranean_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH68372.1\|2196848_2197805_-	UvrABC system protein A	A0A1B1IVR3	uncultured_Mediterranean_phage	2.6e-117	64.9
VEH68373.1\|2197833_2198268_-	UvrABC system protein A	A0A1B1IVR3	uncultured_Mediterranean_phage	5.7e-43	62.2
VEH68374.1\|2198333_2198636_-	UvrABC system protein A	A0A1B1IVR3	uncultured_Mediterranean_phage	2.9e-09	39.3
VEH68375.1\|2198638_2199676_-	UvrABC system protein A	A0A1B1IVR3	uncultured_Mediterranean_phage	5.8e-102	52.9
VEH68376.1\|2199831_2200335_+	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	2.5e-42	52.7
VEH68377.1\|2200648_2201143_-	Uncharacterised protein	NA	NA	NA	NA
VEH68378.1\|2201251_2202271_-	Cell wall-associated polypeptide CWBP200	A0A2H4JFP5	uncultured_Caudovirales_phage	5.1e-26	34.2
VEH68379.1\|2202382_2202562_-	Uncharacterised protein	NA	NA	NA	NA
VEH68380.1\|2202564_2202753_-	NC domain	NA	NA	NA	NA
VEH68381.1\|2202833_2203514_-	Cell wall-associated polypeptide CWBP200	A0A2H4JFP5	uncultured_Caudovirales_phage	1.1e-32	35.6

DBSCAN-SWA_16

2235721 : 2243906

Bacillus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH68427.1\|2235721_2236657_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	8.8e-57	44.4
VEH68428.1\|2236896_2237382_+	dihydrofolate reductase	A0A0S2MU93	Bacillus_phage	2.7e-17	45.6
VEH68429.1\|2237292_2237979_-	chaperone protein ClpB	H6X3M6	Enterobacteria_phage	1.3e-44	43.2
VEH68430.1\|2237924_2238491_-	chaperone protein ClpB	A0A223W0B1	Agrobacterium_phage	1.5e-11	41.5
VEH68431.1\|2238528_2239908_-	chaperone protein ClpB	K4FB40	Cronobacter_phage	4.1e-71	51.3
VEH68432.1\|2239998_2240271_-	putative 5-formyltetrahydrofolate cyclo-ligase-family protein	NA	NA	NA	NA
VEH68433.1\|2240278_2240563_-	putative 5-formyltetrahydrofolate cyclo-ligase-family protein	NA	NA	NA	NA
VEH68434.1\|2240860_2241157_-	cell division protein ZapA	NA	NA	NA	NA
VEH68435.1\|2241313_2242606_+	DNA polymerase I	U5PWU8	Bacillus_phage	5.9e-27	30.3
VEH68436.1\|2242578_2242893_+	DNA polymerase I	NA	NA	NA	NA
VEH68437.1\|2242862_2243906_+	DNA polymerase I	A0A142F1Q9	Bacillus_phage	3.1e-42	36.7

DBSCAN-SWA_17

2339126 : 2344803

Bacillus_virus(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH68595.1\|2339126_2339297_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.9e-08	52.0
VEH68596.1\|2339314_2339428_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.4e-06	65.7
VEH68597.1\|2339427_2340315_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.5e-86	59.1
VEH68598.1\|2340350_2340905_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	7.5e-56	62.7
VEH68599.1\|2341018_2341498_-	trigger factor	NA	NA	NA	NA
VEH68600.1\|2341482_2342316_-	trigger factor	NA	NA	NA	NA
VEH68601.1\|2342591_2342972_-	peptidoglycan-binding Lysin subgroup family protein	NA	NA	NA	NA
VEH68602.1\|2343138_2343969_+	protein YpfJ	A0A1I9SA48	Rhodococcus_phage	2.4e-34	38.2
VEH68603.1\|2344015_2344702_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	1.4e-22	36.9
VEH68604.1\|2344698_2344803_-\|protease	ATP-dependent protease ATPase subunit HslU	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134405

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection