Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LR134407 Corynebacterium kutscheri strain NCTC3655 genome assembly, chromosome: 1 4 crisprs DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,DinG 0 6 2 0

Results visualization

1. LR134407
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR134407_1 181513-182211 TypeI-E I-E
11 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR134407_2 183911-183990 TypeI-E I-E
1 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR134407_3 184435-185317 TypeI-E I-E
14 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR134407_5 2279289-2280661 Orphan NA
22 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LR134407_1 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 181602-181634 33 KY613597 Corynebacterium phage LGCM-V2, complete genome 15361-15393 1 0.97
LR134407_1 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 181602-181634 33 KY624612 Corynebacterium phage LGCM-V6, complete genome 15361-15393 1 0.97
LR134407_1 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 181602-181634 33 KY566218 Corynebacterium phage LGCM-VI, complete genome 15361-15393 1 0.97
LR134407_1 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 181602-181634 33 KY624613 Corynebacterium phage LGCM-V5, complete genome 15361-15393 1 0.97
LR134407_1 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 181602-181634 33 KY624615 Corynebacterium phage LGCM-V8, complete genome 15361-15393 1 0.97
LR134407_1 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 181602-181634 33 KY624611 Corynebacterium phage LGCM-V4, complete genome 15364-15396 1 0.97
LR134407_1 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 181602-181634 33 KY624616 Corynebacterium phage LGCM-V9, complete genome 15361-15393 1 0.97
LR134407_1 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 181602-181634 33 KY624610 Corynebacterium phage LGCM-V3, complete genome 15361-15393 1 0.97
LR134407_1 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 181602-181634 33 KY624614 Corynebacterium phage LGCM-V7, complete genome 15361-15393 1 0.97
LR134407_3 3.6|184768|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 184768-184800 33 NC_009669 Ochrobactrum anthropi ATCC 49188 plasmid pOANT01, complete sequence 112593-112625 9 0.727
LR134407_3 3.8|184890|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 184890-184922 33 MN698242 Pelagibacter phage HTVC103P, complete genome 24771-24803 9 0.727
LR134407_3 3.14|185257|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 185257-185289 33 MH572395 Microviridae sp. isolate SD_SF_35, complete genome 3260-3292 10 0.697
LR134407_5 5.2|2279378|34|LR134407|PILER-CR,CRISPRCasFinder,CRT 2279378-2279411 34 KY626177 Marinomonas phage CPG1g, complete genome 42297-42330 10 0.706
LR134407_5 5.2|2279378|34|LR134407|PILER-CR,CRISPRCasFinder,CRT 2279378-2279411 34 MF481197 Marinomonas phage CB5A, complete genome 43438-43471 10 0.706
LR134407_5 5.2|2279378|34|LR134407|PILER-CR,CRISPRCasFinder,CRT 2279378-2279411 34 NC_047821 Marinomonas phage CPP1m, complete genome 42298-42331 10 0.706
LR134407_5 5.5|2279563|33|LR134407|PILER-CR,CRISPRCasFinder,CRT 2279563-2279595 33 JN699011 Mycobacterium phage Stinger, complete genome 14528-14560 10 0.697

1. spacer 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to KY613597 (Corynebacterium phage LGCM-V2, complete genome) position: , mismatch: 1, identity: 0.97

acgggacttagcccgcgagatgttgacgttggg	CRISPR spacer
acgggacttagcccgcgagatgttgactttggg	Protospacer
*************************** *****

2. spacer 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to KY624612 (Corynebacterium phage LGCM-V6, complete genome) position: , mismatch: 1, identity: 0.97

acgggacttagcccgcgagatgttgacgttggg	CRISPR spacer
acgggacttagcccgcgagatgttgactttggg	Protospacer
*************************** *****

3. spacer 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to KY566218 (Corynebacterium phage LGCM-VI, complete genome) position: , mismatch: 1, identity: 0.97

acgggacttagcccgcgagatgttgacgttggg	CRISPR spacer
acgggacttagcccgcgagatgttgactttggg	Protospacer
*************************** *****

4. spacer 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to KY624613 (Corynebacterium phage LGCM-V5, complete genome) position: , mismatch: 1, identity: 0.97

acgggacttagcccgcgagatgttgacgttggg	CRISPR spacer
acgggacttagcccgcgagatgttgactttggg	Protospacer
*************************** *****

5. spacer 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to KY624615 (Corynebacterium phage LGCM-V8, complete genome) position: , mismatch: 1, identity: 0.97

acgggacttagcccgcgagatgttgacgttggg	CRISPR spacer
acgggacttagcccgcgagatgttgactttggg	Protospacer
*************************** *****

6. spacer 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to KY624611 (Corynebacterium phage LGCM-V4, complete genome) position: , mismatch: 1, identity: 0.97

acgggacttagcccgcgagatgttgacgttggg	CRISPR spacer
acgggacttagcccgcgagatgttgactttggg	Protospacer
*************************** *****

7. spacer 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to KY624616 (Corynebacterium phage LGCM-V9, complete genome) position: , mismatch: 1, identity: 0.97

acgggacttagcccgcgagatgttgacgttggg	CRISPR spacer
acgggacttagcccgcgagatgttgactttggg	Protospacer
*************************** *****

8. spacer 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to KY624610 (Corynebacterium phage LGCM-V3, complete genome) position: , mismatch: 1, identity: 0.97

acgggacttagcccgcgagatgttgacgttggg	CRISPR spacer
acgggacttagcccgcgagatgttgactttggg	Protospacer
*************************** *****

9. spacer 1.2|181602|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to KY624614 (Corynebacterium phage LGCM-V7, complete genome) position: , mismatch: 1, identity: 0.97

acgggacttagcccgcgagatgttgacgttggg	CRISPR spacer
acgggacttagcccgcgagatgttgactttggg	Protospacer
*************************** *****

10. spacer 3.6|184768|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to NC_009669 (Ochrobactrum anthropi ATCC 49188 plasmid pOANT01, complete sequence) position: , mismatch: 9, identity: 0.727

aatgcgtgtttccatcgcgtcgatacgcgatcc---	CRISPR spacer
ccgccgcgtttccatcgcgtagatacgc---ccagg	Protospacer
    **.************* *******   **   

11. spacer 3.8|184890|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to MN698242 (Pelagibacter phage HTVC103P, complete genome) position: , mismatch: 9, identity: 0.727

cccctggaaaatacggcacttgaaagacaatac	CRISPR spacer
tttattgaaaataaagcacttgaaagacaaaaa	Protospacer
... * ******* .*************** * 

12. spacer 3.14|185257|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to MH572395 (Microviridae sp. isolate SD_SF_35, complete genome) position: , mismatch: 10, identity: 0.697

gggaatgcggaaactctggatcgcagacagtgg	CRISPR spacer
ccctatggggaaactctggatcgtagacacgtc	Protospacer
    *** ***************.*****    

13. spacer 5.2|2279378|34|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to KY626177 (Marinomonas phage CPG1g, complete genome) position: , mismatch: 10, identity: 0.706

cccataaatgctgtcccacctgcaggaacaatac	CRISPR spacer
actataaaagctgtcccacctgtaggactttcat	Protospacer
 *.***** *************.**** .  .*.

14. spacer 5.2|2279378|34|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to MF481197 (Marinomonas phage CB5A, complete genome) position: , mismatch: 10, identity: 0.706

cccataaatgctgtcccacctgcaggaacaatac	CRISPR spacer
actataaaagctgtcccacctgtaggactttcat	Protospacer
 *.***** *************.**** .  .*.

15. spacer 5.2|2279378|34|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to NC_047821 (Marinomonas phage CPP1m, complete genome) position: , mismatch: 10, identity: 0.706

cccataaatgctgtcccacctgcaggaacaatac	CRISPR spacer
actataaaagctgtcccacctgtaggactttcat	Protospacer
 *.***** *************.**** .  .*.

16. spacer 5.5|2279563|33|LR134407|PILER-CR,CRISPRCasFinder,CRT matches to JN699011 (Mycobacterium phage Stinger, complete genome) position: , mismatch: 10, identity: 0.697

tacgctcagggcgcgcagcaagatcagtgatac	CRISPR spacer
ggcgctcaaggcgcgcagccagatcaccgccga	Protospacer
 .******.********** ****** .* .. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 235176 : 252203 25 Corynebacterium_phage(41.18%) terminase NA
DBSCAN-SWA_2 2209005 : 2218435 12 Erysipelothrix_phage(36.36%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage