CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134472	Parvimonas micra strain NCTC11808 genome assembly, chromosome: 1	4 crisprs	cas6,PD-DExK,cas10,csm3gr7,cas3,DEDDh	1	11	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134472_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134472_1

454459-454557

Orphan

Consensus_repeat	Method
CTTCGCATCGGGTGGGTGCCCGAGAACCTTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134472_1

>merge|LR134472|1|454459-454557|CRISPRCasFinder
CTTCGCATCGGGTGGGTGCCCGAGAACCTTGTTACTTCGTAATAAAAACCTCACCCTTCCTCGATACTTCGCATCGGGTGGGTGCCCGAGAACCTTGTT

>LR134472|1|1|454459-454557|CRISPRCasFinder
CTTCGCATCGGGTGGGTGCCCGAGAACCTTGTT	ACTTCGTAATAAAAACCTCACCCTTCCTCGATA
CTTCGCATCGGGTGGGTGCCCGAGAACCTTGTT

Protein	Signature genes	Signature genes Name	Protein_function
LR134472.1\|VEH95729.1\|456086_457418_-\|Na(+)/drug-antiporter	unknown	unknown	gnl\|CDD\|240540
LR134472.1\|VEH95743.1\|460083_460620_-\|Flavoredoxin	unknown	unknown	gnl\|CDD\|224766
LR134472.1\|VEH95747.1\|460629_461460_-\|Thymidylate-synthase-1	unknown	unknown	gnl\|CDD\|376313
LR134472.1\|VEH95689.1\|444519_445326_+\|Putative-phosphotransferase-yqfL	unknown	unknown	gnl\|CDD\|377080
LR134472.1\|VEH95739.1\|459511_459955_-\|putative-acyltransferase	unknown	unknown	gnl\|CDD\|225064
LR134472.1\|VEH95681.1\|441727_442342_-\|CAAX-amino-terminal-protease-self--immunity	unknown	unknown	gnl\|CDD\|376806
LR134472.1\|VEH95705.1\|448809_450246_-\|Beta-(1--2)glucan-export-ATP-binding/permease-protein-NdvA	unknown	unknown	gnl\|CDD\|224055
LR134472.1\|VEH95756.1\|462367_462598_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH95701.1\|448465_448786_-\|Regulator-of-competence-specific-genes	unknown	unknown	gnl\|CDD\|225612
LR134472.1\|VEH95751.1\|461671_461917_+\|50S-ribosomal-protein-L31-type-B	unknown	unknown	gnl\|CDD\|234969
LR134472.1\|VEH95693.1\|445339_447964_+\|Pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
LR134472.1\|VEH95719.1\|454666_454846_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
LR134472.1\|VEH95697.1\|448045_448405_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH95708.1\|450282_451842_-\|Lactococcin-G-processing-and-transport-ATP-binding-protein-LagD	unknown	unknown	gnl\|CDD\|224055
LR134472.1\|VEH95726.1\|455506_456019_-\|Isochorismatase-family	unknown	unknown	gnl\|CDD\|238245
LR134472.1\|VEH95722.1\|454991_455333_-\|HIT-like-protein-HI_0961	unknown	unknown	gnl\|CDD\|238607
LR134472.1\|VEH95712.1\|451985_452906_-\|Pseudouridine-5'-phosphate-glycosidase	unknown	unknown	gnl\|CDD\|377251
LR134472.1\|VEH95685.1\|442908_444306_-\|Putative-peptidoglycan-binding-domain	unknown	unknown	gnl\|CDD\|341130
LR134472.1\|VEH95715.1\|452877_453996_-\|Pseudouridine-kinase	unknown	unknown	gnl\|CDD\|238916
LR134472.1\|VEH95735.1\|457407_459501_-\|DNA-topoisomerase-1	unknown	unknown	gnl\|CDD\|235516

Protein	Function_ID	Function_description	E-value
LR134472.1\|VEH95729.1\|456086_457418_-\|Na(+)/drug-antiporter	gnl\|CDD\|240540	cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.30625e-66
LR134472.1\|VEH95743.1\|460083_460620_-\|Flavoredoxin	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	1.37507e-18
LR134472.1\|VEH95747.1\|460629_461460_-\|Thymidylate-synthase-1	gnl\|CDD\|376313	pfam00303, Thymidylat_synt, Thymidylate synthase. This is a family of proteins that are flavin-dependent thymidylate synthases.	1.62019e-131
LR134472.1\|VEH95689.1\|444519_445326_+\|Putative-phosphotransferase-yqfL	gnl\|CDD\|377080	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity.	4.08455e-134
LR134472.1\|VEH95739.1\|459511_459955_-\|putative-acyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	2.12392e-28
LR134472.1\|VEH95681.1\|441727_442342_-\|CAAX-amino-terminal-protease-self--immunity	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.74104e-09
LR134472.1\|VEH95705.1\|448809_450246_-\|Beta-(1--2)glucan-export-ATP-binding/permease-protein-NdvA	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.77513e-25
LR134472.1\|VEH95701.1\|448465_448786_-\|Regulator-of-competence-specific-genes	gnl\|CDD\|225612	COG3070, TfoX, Regulator of competence-specific genes [Transcription].	1.38448e-12
LR134472.1\|VEH95751.1\|461671_461917_+\|50S-ribosomal-protein-L31-type-B	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	1.0149e-49
LR134472.1\|VEH95693.1\|445339_447964_+\|Pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
LR134472.1\|VEH95719.1\|454666_454846_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	2.39854e-13
LR134472.1\|VEH95708.1\|450282_451842_-\|Lactococcin-G-processing-and-transport-ATP-binding-protein-LagD	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.75249e-68
LR134472.1\|VEH95726.1\|455506_456019_-\|Isochorismatase-family	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	3.49185e-30
LR134472.1\|VEH95722.1\|454991_455333_-\|HIT-like-protein-HI_0961	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	2.70214e-56
LR134472.1\|VEH95712.1\|451985_452906_-\|Pseudouridine-5'-phosphate-glycosidase	gnl\|CDD\|377251	pfam04227, Indigoidine_A, Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.	0
LR134472.1\|VEH95685.1\|442908_444306_-\|Putative-peptidoglycan-binding-domain	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.5909e-28
LR134472.1\|VEH95715.1\|452877_453996_-\|Pseudouridine-kinase	gnl\|CDD\|238916	cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.	1.24472e-69
LR134472.1\|VEH95735.1\|457407_459501_-\|DNA-topoisomerase-1	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0

>LR134472.1|VEH95715.1|452877_453996_-|Pseudouridine-kinase
MTKREQELLEIIKENPYISQNELADLLNIKRSSVAVHISNLIKKGYLVGRAYVINSNLSKEVCVIGGCNIDFIAKSFEKINMKDSNPGTLEYSFGGVGKNIAENLLKMGIENKFISVFGDDVYSREIKDYLKKIGLDFSNSKFLTNRGMSNYISILDENNDLFTAISSMEVLDEINIEFISKLIDLIKSYKYIVMDTNLREDVLEYICKNCPNSKIIVDCVSRKKALKIKKLLKYIYLLKPNIYEAEELTDIPYENESDLEKIVNVFLEKGVQKIFISMGEKGILYADKNENGIVKITEKPKIENTSGCGDSAMSGIIFGVVNEKDILECAKLGNIAGFITAQSMDTVSKNISEKNLLNFGGSYEIRKIFNS
>LR134472.1|VEH95712.1|451985_452906_-|Pseudouridine-5'-phosphate-glycosidase
MKLEKYLTVSEEVKNAIKENKPVVALESTIISHGMPYPKNVETALEVEKVVRENGAIPATIAIINGEIKVGLTKEEIEVIGKAGLSVTKTSRRDLAYVVANKLNGATTVAATMICAEMAGIKVFATGGIGGVHRGAETTMDISADLEELGNTNVAVICAGCKSILDMGLTLEYLETKGVPVYGYQTNILPAFYTRESDFKVSKINSEEEIAKVLKAKWDLELNGGVVIANPIPEEFSMDRNLIDKTILDALKEADENGIKGKDTTPFLLDKVQKLTQGKSLEANIRLVFNNAKLASKIAIEYSKLA
>LR134472.1|VEH95708.1|450282_451842_-|Lactococcin-G-processing-and-transport-ATP-binding-protein-LagD
MIKSKYKKNIHKIIILFISGIIVGSFSIFPMVLIQKVIDSLTTGYTVEFFKYIILYSLIYILIDLFKIILINFGSKFELNLNRDIKDEIIESILNTKIDLLEKIGGSNVFNSIIDDLKSLDDKIIPLVFGLGFSISSFIIGAIIIIKYDYIMLISMLLISSVSTILIQKILNSSEIASERSQIQRLNVINKLFDIIVGARDIKLFNKEKFFSKDFTSENSKLNKLDKKIVNIKNISQTLVRLLFNLIMAILILIGGIRVSQNNLSIGALIAIILYASMITDPIFNIIENQKEISAFKNSVKRIDNTFEMLERENIDLQKNFNVIEFKDVSLNYGDNQILSEFNFIINKNDKVKINGRTGSGKSSLAKLITNLYKPTSGNILIDGKKNKTISLSAVFQENKLFNMSIIDNITFKSNIEKEKLKQIIKICRLEEVIEKYSDNSIGFDSSTLSGGEKTRLLLARALYKDCELYIFDEISTGLDESLFYEIFDDVMKFLQSKTIIVIDHKYIDEKYFTKSIFI
>LR134472.1|VEH95705.1|448809_450246_-|Beta-(1--2)glucan-export-ATP-binding/permease-protein-NdvA
MFRLIKFVDKKLIYKRAFIKLAVKSMFIISPFLSQKFIDSIIGKDKSNMILFAILNVVAYILSQIIFYFDDISLGVCETNSYKNILNTVYKNILCFDEKKSKLESSNIYHNLGQNYELINKFIFENPVLCIINFVYLVALLIMMFRYSVLISLIVMLLIPIFILLTKKYEYKFEILTGSWINTIEKCKKYLSDVYKFRFLIRNNNNKFKKIDTITREYNYYSRKKYKFESFFNNILSYSCLNFMILVVNIISGIEVYRGKLSIGAFFALSLYVSHFWTPVEFYVDFYKEYMSKKTIINNFYEFLNVEKLDENNDSIDSLELKDYSLLGKTMVNEKFEKGNVYLILGENGSGKTTLFTNILGVTERYSGEILINDFTRKNEYYNNIFFLNSEVLDSEFFIDEDLTKKSMGQKKLYYLNCLNGIDADVYLVDEPTNYLQEDKKQIIFEILNNLKDKNKIVLVATHDEFLIKQEDFKKIYI
>LR134472.1|VEH95701.1|448465_448786_-|Regulator-of-competence-specific-genes
MASSKEYLEYILEQLSELEDIKYRAMMGEYIIYYKEKVIGGIYDDRFLVKATKKAIDYVSEVQFQLPYEGAKEMLLVDDVEDKMYLKGLFETMYDELPFPKTKKKK
>LR134472.1|VEH95697.1|448045_448405_-|Uncharacterised-protein
MKLDKSKNNIIKKFLGILLIIVIYIPLYLFLFEYIDCRSLIYFYLVFISVFILKIILYIFKFKNKLIVISFAGDIMLSSKILERALIYENKYLVSFSFFGFLFCAILALYVKYVEDGKS
>LR134472.1|VEH95693.1|445339_447964_+|Pyruvate,-phosphate-dikinase
MSKFVYNFDEGNKDMRALLGGKGANLAEMTNIGLNVPFGFTITTEACNNFYKNDEKISESLIEEIKNHIKDCENKLQKSFSSTENPLLFSVRSGAVISMPGMMDTILNLGLNDKSVIGLANSTNNERFAFDSYRRFIQMFSDVAMEIPKIYFENELDRIKEEKNVKMDTELTAEDLKILVEKFKKIFKQETGKEFPQDPIEQLIIAIKAVFKSWMNPRAIVYRKLNGIDDSLGTAVNVQAMVFGNMGNTSGTGVAFSRNPSTGENKLFGEFLMNAQGEDVVAGIRTPESIEKLKEIMPEVYDEFLRIAKTLEKHYKDMQDLEFTIEKGKLYLLQTRNGKRTTDAAINVAVDLVNEGLISKEEAILRVEPKSLDQLLHPIFNAEMMKNTPILARGLAASPGAASGKVYFHSRDIVDAVKSGEKVILVRQETSPEDIEGMVEAEGILTARGGMTSHAAVVARGMGKCCIAGASEIKVDEIERVIKTQNEVIKEGDVISLDGTTGIIYKGEIEKLNPQLTGNFKIFMDWVNEIKVLGVRANADNPRDAKQAVEFGAEGIGLCRTEHMFFDKDRIPVVRQMILSENTEQRVEALEKIRPMQEKDFYDIYSVLKEKSVTIRLLDPPLHEFLPYEDEDIKNLAKEMNIDEGHLRDVITDLEEVNPMLGHRGCRLAVTYPEIYRMQAKAIINAAIKAQKDLNISITPEIMIPLVGELEELKYVKREIVEEIEMTLKELNENIKYKIGTMIEIPRAALLADEIATEAEFFSYGTNDLTQMTFGFSRDDAGKFLNEYENKKIFDFNPFAKLDQKGVGKLVKMSFKLGRETNPHLHVGICGEHGGDPDTIEFLNSVGIDYVSCSPFRVPIARLAAAQAKIKQSR
>LR134472.1|VEH95689.1|444519_445326_+|Putative-phosphotransferase-yqfL
MLNIFLISDSTGETAEQLARAALAQFNNIEYSLERFSHIREFSDLSEILNKCKETENSILFYSLVDAPLLDYVKKFSELHSITNVDLLSASILAIQRVSNITPGNTPGALRKLNEEYFKRIDSIEFAVRYDDGKDPRGVLIADLVIIGISRTSKTPLSMYLANKNIRVANIPLVPETPVPEELFQVSPKKIIGLTNTPEKLESIRKERLKSLGLPDNSIYSNSNRILEELEYSSRIMKKIGCPVIDVSAKAIEETADIILKHLLKINK
>LR134472.1|VEH95685.1|442908_444306_-|Putative-peptidoglycan-binding-domain
MIEDNKKTSRKKLIKKISIFFGALFISIYLLGVIIFSFIALPNTKVNGNDVSYVMIDDVFNKDWTDVSIKLNRSDGKSDFFKPEKINYKEEYLADKKILQNQFAWPLAFFTSRDFKLEVNVSYDNDKFEEFLKNTLILKGLKHPEDAKIVYKDGKYAIQSEIMGTYTTKEKLKEAILIALSERKESIDMSKISEQPKLKKDDKSLQDALSKYEKISKLKYEINIGSNKEVLDGELLANIFTFVDGELKPDEQKARDYVRRLAIKYDTFGMDRKFKTTGKGEITVPGKDGIYGWQIDVNKTKDLLVEKLLNFKSESIEPVFIHKGLYYDKEDDIGNTYIEIDLTRQHMWLYKEGKLLLETDIVTGDVSKKVETPIGVMKVWSREKDRNLKGLSPLGYNYVAHVDYWMPINWTGVGIHDAPWRNGKFGGNIYKTSGSYGCINTPLDKVKQIYENVEINTPVIVYKSN
>LR134472.1|VEH95681.1|441727_442342_-|CAAX-amino-terminal-protease-self--immunity
MDLLMKKLTNSIIQIIIFSLIPFLWWLITSRKKMNFFEWIGLKKVNNIKENKLFAWIFSVLVLFLIISVFILYSLKNVNVASSEFTGLGIKSLPSILIYAIFNTSLPEEILFRGFLLKRIGNKFGFIVNNGIQSLLFGCIHGIMFFSAIGILKSMLIILFTGIIGWIMGYINEKKANGSILPSWFIHAVANIFSGICYAFQLIE
>LR134472.1|VEH95719.1|454666_454846_-|30S-ribosomal-protein-S21
MAEIRVGENESLDNALKRFKRQCARAGVLSEYRKREHYEKPSVKRKKKSEAARRKKKKF
>LR134472.1|VEH95722.1|454991_455333_-|HIT-like-protein-HI_0961
MNCIFCKIVNGEIPSNKIYEDDDIVAFNDLSPQSPIHFLVIPKKHIESCNFVDKENAEVVGKIFLKISELAKEMGFDKSGYRIVNNCNDNGGQTVKHLHFHVLAGRSLNWPPG
>LR134472.1|VEH95726.1|455506_456019_-|Isochorismatase-family
MKILVVIDVQNDFVDGRLGTKEAINMIPNLKEKIKNFDGEIIYTMDTHDDNYLNTQEGRKLPLKHCIKGTDGWKIREGIYKENCKIFEKAGFGSSDLVEYLKSLNEKEQIESIEFVGICTDICVIVNTLMIKGFLPEVELIVDSKCCAGVTPQSHNTALEAMKMCQVDIL
>LR134472.1|VEH95729.1|456086_457418_-|Na(+)/drug-antiporter
MKNKRLELNKFAFPLMVNFILSYILELSDIAIVARVSTPAFNAVNLISSTLYTISAVLGATAIIINTKLGEKLGQGDEKGLNYEFFSSLAINIFMGIIFLILMLLGKTYFLKIFYNLSGETLEQGILFSYPMSFCVLLQLCLFTFGAYFRISNMTKWILIGSTVSSVLNLGLDYLFVLGKFGFPKLGITMVGFSTVFSMFVNLLIYIFVLKNKLNLKFELLKSYFINGINHFKLAFPIMIQEIFDGTIFVIIFNMIVIRIGNNEFAGYSIITNLIMFLFTFKHIYGSATLSLISISSGEKNIRNLIDYPKISVKITTVLFIFGSALFVIFREYLPKLITDDVSVQNIATKFLIFFLIANICSSYSYIYKCALQGLNKNMFLLKTTAGVNIISLILMLILTQVFDLSLFGVAFTQFVNEFILSVIFLKYYRYIVNDKFYNLTKD
>LR134472.1|VEH95735.1|457407_459501_-|DNA-topoisomerase-1
MYKNLVIVESPTKAKTVSKMLGSNYKVVASVGHIRDLPKSKMGIDIENNFEPEYINVRGKASKIKELKELYKNSENIYLATDPDREGEAISWHIAYLLGLDINDNNRIEFHEITKKSIKESIKNSRKIDMNLVNSQQARRVLDRLVGYKLSPILWKKIKSGLSAGRVQSATLKIICERQEEIDNFVPEEFWKIEGIHNVQNIEFKSLYYGEYENKKIVKKEIKNEKEALKVVEKTDKDNFIVEDVKKVKKERKPQPPFTTSTLQQEAGRKLGFSSSMTMSIAQQLYEGINVGKEGSVGLISYMRTDSTRISSEIVAEAIEYITENYGKNYASKGNEYNLKKKNSQDAHEGVRPSSIFRSPEKIKSYLTSNQYKLYKLIWERTVASQMKAESYESTQIVLNSNNCIYKLNGRYTLFDGFSKIYTSSDIKDEPLPKLEVKDVINAEKIEKSQHFTKPVANFTEASLVKKLEENGIGRPSTYASIINSLTSRFYILIENKKIIPTDLGKNVNKFLVSNFETIINEKFTMEMEEKLDEIAENKKDWKKVISDFYAVFETFLKRSEGDSEDYKIKDEVLDEKCPQCGKNLVIKKTKFGRFIGCSGFPDCNYIKKEVKDTGVKCPKCGGRIIEKISKKRKVFYGCENYPECDYAIWDKPIADKKCEKCGKFLVEVKNRFKHALKCSDENCDFEIDLKKKKNEK
>LR134472.1|VEH95739.1|459511_459955_-|putative-acyltransferase
MEYRILKSEEMEKAFALREEVFVDEQKVPLEYEIDKKDSLEDTIHVGVFEGDELLATARIMNINKDIVYFGRACVKKSCRGKGVGKFLFISMEETVKKFKKENEKKTIRFSAQYHAMTFYEMLGYTKDNDDIFVEVGIEHISMSKIV
>LR134472.1|VEH95743.1|460083_460620_-|Flavoredoxin
MKRKINVFDYAKEIMLAVEKGVLLTTKSKEKINTMSISWGTLGIEWNRPIFTAFVRESRFTKKLLDESGEFTVNIFLNDFDKNIIGVCGTKSGRDTDKIKDLNLTLVESEIVDVPAIKELPLTLECKVIYKQKQDENAIPKEIKEKNYPENVSGEFYGANRDYHTAYYGEIVSAYIIE
>LR134472.1|VEH95747.1|460629_461460_-|Thymidylate-synthase-1
MSRADDIFISMCKDILENGVDTKGEKVRPVWEDGTKAYTIKKFGVVNRYNLAEEFPALTLRKTAIKLCTDEMLWIWQKKSNNIKDLKSHVWDEWADENGSIGKAYGYQLGVKHKYKEGMFDQVDRVIYDLKNNPYSRRIITNIYVHEDLSEMNLYPCAYSMTFNVTGNKLNAILNQRSQDILTANNWNVCQYAILIHMLARECNLEVGELVHVIADAHIYDRHVPIIKELITREKFPAPKVTLNPDVKNFYDFTSDDVIIENYKCGEQIKDIPIAI
>LR134472.1|VEH95751.1|461671_461917_+|50S-ribosomal-protein-L31-type-B
MKKGIHPEYNKVVFMDTTSGYKFICGSTKTSNETIEMEDGNTYPLIKIEISSDSHPFYTGRQRFVEKGGRIEKFKKRYNMD
>LR134472.1|VEH95756.1|462367_462598_-|Uncharacterised-protein
MKKEYYDLYDIVIKDINADGYFVYSNKAKKFIREKTNMTVDQQKRAFQFFELMGYFNQHDKFPKIYIRSKKLKGGC

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Crispr_ID: LR134472_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134472_2

1400952-1402359

TypeIII

Consensus_repeat	Method
GTTTAAATAGAAACATACTGTAATGTAAAT	PILER-CR
GTTTAAATAGAAACATACTGTAATGTAAAT	CRISPRCasFinder
GTTTAAATAGAAACATACTGTAATGTAAAT	CRT

21 spacers

csm3gr7,cas10,PD-DExK,cas6

The CRISPR arrays of LR134472_2

>merge|LR134472|2|1400952-1402359|PILER-CR,CRISPRCasFinder,CRT
GTTTAAATAGAAACATACTGTAATGTAAATCCAATGAATTCAGTCATAGCGTTTTCATCTTTACGTTTAAATAGAAACATACTGTAATGTAAATTATTTAGCTAATGATTTAATTGCTACTCCTGCAAAGGTTTAAATAGAAACATACTGTAATGTAAATGTTCTGCAACTTTTTTACTTTCTACAGCTTTTTCAGTTTAAATAGAAACATACTGTAATGTAAATTTTTCTATTGATATTTTATTATTATTGATTAATTCGGTTTAAATAGAAACATACTGTAATGTAAATTATATTTTGTCAAAAATATTTTTTGGTTATTTTTCGTTTAAATAGAGACATACTGTAATGTAAATGTTGCTGCTAATCCTGATACAGTTCCAACAGCTGCTGCTGTGTTTAAATAGAGACATACTGTAATGTAAATTAAGTAAAAACTCCTTGTTCAAAAGTAGTAGTTGTGTTTAAATAGAGACATACTGTAATGTAAATTTATGATAAGGAAAATTAGGTTTGTATTCCTGATATTGTTTAAATAGAAACATACTGTAATGTAAATACAACTCCTTATTCTCGTATATATTGCCTATTACTGTTTAAATAGAAACATACTGTAATGTAAATTTTGTTTATTTTTCAGTATCTCATCTACTGTAACTGTTTAAATAGAAACATACTGTAATGTAAATACTTCCTTTTGTTGAAGATGTGGACAACGAGATTGGTTTAAATAGAAACATACTGTAATGTAAATGATTTCCCATTAAGCCCATTACCAAAGAGAATAAATAAGTTTAAATAGAAACATACTGTAATGTAAATAAGGAAGTTAAAGAAAAATAGGAGATAGAAATGCTTGTTTAAATAGAAACATACTGTAATGTAAATTTATATTCTGTTGACATTTTTATAAATTGTCTATCTTCAGTTTAAATAGAAACATACTGTAATGTAAATACTACTTGAGGGGCCGTATTTGAGTTAGCACCTATGTTTAAATAGAAACATACTGTAATGTAAATCTGATGATATACTCATCAGCGAAACGTTGTTGTTTAAATAGAAACATACTGTAATGTAAATTCCATGTTTTTCTCCTTTCTCTTGTCCTGATTTTTTGTTTAAATAGAAACATACTGTAATGTAAATTTTAATAAGTCTTGATAAAATTTTAATCTTTCAAGGTTTAAATAGAAACATACTGTAATGTAAATTACACAAGAATTTTTTTGCCTTTTGCTGTGTATCGTTTAAATAGAAACATACTGTAATGTAAATGAAAATTTAACCGCTTGATAATATCGCCATTCTTCGTTTAAATAGAAACATACTGTAATGTAAATTTTACTCCTTGAATCATAGCAACTGCAGTTTCAATGTTTAAATAGAAACATACTGTAATTTCGTA

>LR134472|2|1|1400952-1402294|PILER-CR
GTTTAAATAGAAACATACTGTAATGTAAAT	CCAATGAATTCAGTCATAGCGTTTTCATCTTTAC
GTTTAAATAGAAACATACTGTAATGTAAAT	TATTTAGCTAATGATTTAATTGCTACTCCTGCAAAG
GTTTAAATAGAAACATACTGTAATGTAAAT	GTTCTGCAACTTTTTTACTTTCTACAGCTTTTTCA
GTTTAAATAGAAACATACTGTAATGTAAAT	TTTTCTATTGATATTTTATTATTATTGATTAATTCG
GTTTAAATAGAAACATACTGTAATGTAAAT	TATATTTTGTCAAAAATATTTTTTGGTTATTTTTC
GTTTAAATAGAGACATACTGTAATGTAAAT	GTTGCTGCTAATCCTGATACAGTTCCAACAGCTGCTGCTGT
GTTTAAATAGAGACATACTGTAATGTAAAT	TAAGTAAAAACTCCTTGTTCAAAAGTAGTAGTTGT
GTTTAAATAGAGACATACTGTAATGTAAAT	TTATGATAAGGAAAATTAGGTTTGTATTCCTGATATT
GTTTAAATAGAAACATACTGTAATGTAAAT	ACAACTCCTTATTCTCGTATATATTGCCTATTACT
GTTTAAATAGAAACATACTGTAATGTAAAT	TTTGTTTATTTTTCAGTATCTCATCTACTGTAACT
GTTTAAATAGAAACATACTGTAATGTAAAT	ACTTCCTTTTGTTGAAGATGTGGACAACGAGATTG
GTTTAAATAGAAACATACTGTAATGTAAAT	GATTTCCCATTAAGCCCATTACCAAAGAGAATAAATAA
GTTTAAATAGAAACATACTGTAATGTAAAT	AAGGAAGTTAAAGAAAAATAGGAGATAGAAATGCTT
GTTTAAATAGAAACATACTGTAATGTAAAT	TTATATTCTGTTGACATTTTTATAAATTGTCTATCTTCA
GTTTAAATAGAAACATACTGTAATGTAAAT	ACTACTTGAGGGGCCGTATTTGAGTTAGCACCTAT
GTTTAAATAGAAACATACTGTAATGTAAAT	CTGATGATATACTCATCAGCGAAACGTTGTT
GTTTAAATAGAAACATACTGTAATGTAAAT	TCCATGTTTTTCTCCTTTCTCTTGTCCTGATTTTTT
GTTTAAATAGAAACATACTGTAATGTAAAT	TTTAATAAGTCTTGATAAAATTTTAATCTTTCAAG
GTTTAAATAGAAACATACTGTAATGTAAAT	TACACAAGAATTTTTTTGCCTTTTGCTGTGTATC
GTTTAAATAGAAACATACTGTAATGTAAAT	GAAAATTTAACCGCTTGATAATATCGCCATTCTTC
GTTTAAATAGAAACATACTGTAATGTAAAT

>LR134472|2|2|1400952-1402359|CRISPRCasFinder
GTTTAAATAGAAACATACTGTAATGTAAAT	CCAATGAATTCAGTCATAGCGTTTTCATCTTTAC
GTTTAAATAGAAACATACTGTAATGTAAAT	TATTTAGCTAATGATTTAATTGCTACTCCTGCAAAG
GTTTAAATAGAAACATACTGTAATGTAAAT	GTTCTGCAACTTTTTTACTTTCTACAGCTTTTTCA
GTTTAAATAGAAACATACTGTAATGTAAAT	TTTTCTATTGATATTTTATTATTATTGATTAATTCG
GTTTAAATAGAAACATACTGTAATGTAAAT	TATATTTTGTCAAAAATATTTTTTGGTTATTTTTC
GTTTAAATAGAGACATACTGTAATGTAAAT	GTTGCTGCTAATCCTGATACAGTTCCAACAGCTGCTGCTGT
GTTTAAATAGAGACATACTGTAATGTAAAT	TAAGTAAAAACTCCTTGTTCAAAAGTAGTAGTTGT
GTTTAAATAGAGACATACTGTAATGTAAAT	TTATGATAAGGAAAATTAGGTTTGTATTCCTGATATT
GTTTAAATAGAAACATACTGTAATGTAAAT	ACAACTCCTTATTCTCGTATATATTGCCTATTACT
GTTTAAATAGAAACATACTGTAATGTAAAT	TTTGTTTATTTTTCAGTATCTCATCTACTGTAACT
GTTTAAATAGAAACATACTGTAATGTAAAT	ACTTCCTTTTGTTGAAGATGTGGACAACGAGATTG
GTTTAAATAGAAACATACTGTAATGTAAAT	GATTTCCCATTAAGCCCATTACCAAAGAGAATAAATAA
GTTTAAATAGAAACATACTGTAATGTAAAT	AAGGAAGTTAAAGAAAAATAGGAGATAGAAATGCTT
GTTTAAATAGAAACATACTGTAATGTAAAT	TTATATTCTGTTGACATTTTTATAAATTGTCTATCTTCA
GTTTAAATAGAAACATACTGTAATGTAAAT	ACTACTTGAGGGGCCGTATTTGAGTTAGCACCTAT
GTTTAAATAGAAACATACTGTAATGTAAAT	CTGATGATATACTCATCAGCGAAACGTTGTT
GTTTAAATAGAAACATACTGTAATGTAAAT	TCCATGTTTTTCTCCTTTCTCTTGTCCTGATTTTTT
GTTTAAATAGAAACATACTGTAATGTAAAT	TTTAATAAGTCTTGATAAAATTTTAATCTTTCAAG
GTTTAAATAGAAACATACTGTAATGTAAAT	TACACAAGAATTTTTTTGCCTTTTGCTGTGTATC
GTTTAAATAGAAACATACTGTAATGTAAAT	GAAAATTTAACCGCTTGATAATATCGCCATTCTTC
GTTTAAATAGAAACATACTGTAATGTAAAT	TTTACTCCTTGAATCATAGCAACTGCAGTTTCAAT
GTTTAAATAGAAACATACTGTAATTTCGTA

>LR134472|2|1|1400952-1402359|CRT
GTTTAAATAGAAACATACTGTAATGTAAAT	CCAATGAATTCAGTCATAGCGTTTTCATCTTTAC
GTTTAAATAGAAACATACTGTAATGTAAAT	TATTTAGCTAATGATTTAATTGCTACTCCTGCAAAG
GTTTAAATAGAAACATACTGTAATGTAAAT	GTTCTGCAACTTTTTTACTTTCTACAGCTTTTTCA
GTTTAAATAGAAACATACTGTAATGTAAAT	TTTTCTATTGATATTTTATTATTATTGATTAATTCG
GTTTAAATAGAAACATACTGTAATGTAAAT	TATATTTTGTCAAAAATATTTTTTGGTTATTTTTC
GTTTAAATAGAGACATACTGTAATGTAAAT	GTTGCTGCTAATCCTGATACAGTTCCAACAGCTGCTGCTGT
GTTTAAATAGAGACATACTGTAATGTAAAT	TAAGTAAAAACTCCTTGTTCAAAAGTAGTAGTTGT
GTTTAAATAGAGACATACTGTAATGTAAAT	TTATGATAAGGAAAATTAGGTTTGTATTCCTGATATT
GTTTAAATAGAAACATACTGTAATGTAAAT	ACAACTCCTTATTCTCGTATATATTGCCTATTACT
GTTTAAATAGAAACATACTGTAATGTAAAT	TTTGTTTATTTTTCAGTATCTCATCTACTGTAACT
GTTTAAATAGAAACATACTGTAATGTAAAT	ACTTCCTTTTGTTGAAGATGTGGACAACGAGATTG
GTTTAAATAGAAACATACTGTAATGTAAAT	GATTTCCCATTAAGCCCATTACCAAAGAGAATAAATAA
GTTTAAATAGAAACATACTGTAATGTAAAT	AAGGAAGTTAAAGAAAAATAGGAGATAGAAATGCTT
GTTTAAATAGAAACATACTGTAATGTAAAT	TTATATTCTGTTGACATTTTTATAAATTGTCTATCTTCA
GTTTAAATAGAAACATACTGTAATGTAAAT	ACTACTTGAGGGGCCGTATTTGAGTTAGCACCTAT
GTTTAAATAGAAACATACTGTAATGTAAAT	CTGATGATATACTCATCAGCGAAACGTTGTT
GTTTAAATAGAAACATACTGTAATGTAAAT	TCCATGTTTTTCTCCTTTCTCTTGTCCTGATTTTTT
GTTTAAATAGAAACATACTGTAATGTAAAT	TTTAATAAGTCTTGATAAAATTTTAATCTTTCAAG
GTTTAAATAGAAACATACTGTAATGTAAAT	TACACAAGAATTTTTTTGCCTTTTGCTGTGTATC
GTTTAAATAGAAACATACTGTAATGTAAAT	GAAAATTTAACCGCTTGATAATATCGCCATTCTTC
GTTTAAATAGAAACATACTGTAATGTAAAT	TTTACTCCTTGAATCATAGCAACTGCAGTTTCAAT
GTTTAAATAGAAACATACTGTAATTTCGTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134472.1\|VEH98088.1\|1411201_1412218_+\|Probable-zinc-transport-system-zinc-binding-lipoprotein-AdcA-precursor	unknown	unknown	gnl\|CDD\|376518
LR134472.1\|VEH98074.1\|1403553_1403721_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98058.1\|1394583_1395324_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
LR134472.1\|VEH98068.1\|1398926_1399916_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98054.1\|1391712_1393686_+\|Transketolase	unknown	unknown	gnl\|CDD\|223100
LR134472.1\|VEH98080.1\|1405818_1406520_+\|Phosphorylated-carbohydrates-phosphatase-TM_1254	unknown	unknown	gnl\|CDD\|223620
LR134472.1\|VEH98064.1\|1396253_1398218_+\|CRISPR-associated-protein-Cas10/Csm1,-subtype-III-A/MTUBE	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|274209
LR134472.1\|VEH98056.1\|1393830_1394517_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98082.1\|1406587_1407223_-\|tRNA-(guanine-N(7)-)-methyltransferase	unknown	unknown	gnl\|CDD\|234649
LR134472.1\|VEH98052.1\|1391098_1391416_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98070.1\|1399917_1400736_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98062.1\|1395706_1396252_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98084.1\|1407459_1409988_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|237077
LR134472.1\|VEH98086.1\|1410000_1411050_+\|Ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|236591
LR134472.1\|VEH98066.1\|1398234_1398915_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm3	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|187857
LR134472.1\|VEH98076.1\|1404356_1404863_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98090.1\|1412227_1414144_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98072.1\|1402575_1403136_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98078.1\|1404854_1405283_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98060.1\|1395326_1395683_+\|Uncharacterised-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown

Protein	Function_ID	Function_description	E-value
LR134472.1\|VEH98058.1\|1394583_1395324_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.45594e-13
LR134472.1\|VEH98082.1\|1406587_1407223_-\|tRNA-(guanine-N(7)-)-methyltransferase	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	7.50539e-70
LR134472.1\|VEH98086.1\|1410000_1411050_+\|Ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|236591	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	1.99413e-128
LR134472.1\|VEH98054.1\|1391712_1393686_+\|Transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
LR134472.1\|VEH98080.1\|1405818_1406520_+\|Phosphorylated-carbohydrates-phosphatase-TM_1254	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	4.00559e-18
LR134472.1\|VEH98064.1\|1396253_1398218_+\|CRISPR-associated-protein-Cas10/Csm1,-subtype-III-A/MTUBE	gnl\|CDD\|274209	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.	5.27947e-09
LR134472.1\|VEH98088.1\|1411201_1412218_+\|Probable-zinc-transport-system-zinc-binding-lipoprotein-AdcA-precursor	gnl\|CDD\|376518	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic. ZnuA includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum. ZnuA is part of the bacterial zinc-uptake complex ZnuABC, whose components are the following families, ZinT, pfam09223, pfam00950, pfam00005, all of which are regulated by the transcription-regulator family FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), a high-affinity zinc-uptake protein. In Gram-negative bacteria the ZnuABC transporter system ensures an adequate import of zinc in Zn2+-poor environments, such as those encountered by pathogens within the infected host.	2.50775e-101
LR134472.1\|VEH98066.1\|1398234_1398915_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm3	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	1.01724e-09
LR134472.1\|VEH98084.1\|1407459_1409988_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|237077	PRK12364, PRK12364, ribonucleoside-diphosphate reductase subunit alpha.	0

>LR134472.1|VEH98070.1|1399917_1400736_+|Uncharacterised-protein
MKKIDLKLTTISKVILSPRDSGALYKDIDYSFLNYNHGKEISKEVNMIYPFYSYTNRALLMENNIENIKYYIPASSLKGAILSCIKEDDIKRTLLFNDININPTDISLENLFKYQYLYSETAKIKFEKFFENVGIETLQNGKSYDFYINLKENIAFESILKDLKSKTIEKLNNYMSKLEIVIKKITDNKTNVNYEFNMEISKELMKIINNINSELNNINDDEYILFLGGFKGKINSLNGKINIDDIKSGFYLCDIGGKKYLPYGLVKLKIGN
>LR134472.1|VEH98068.1|1398926_1399916_+|Uncharacterised-protein
MYIFEFKLKRIGEITLLPDSQKLFGFLMGKLKESYPDEKIGEFVESVERKESICMISNLFPTDYRPMPKSYILDILDKLNIGINDKKLYEKIKNIEFIKREDLKKLINLTKNTTTNINNINLDNYNYIKKEDTFIQKFKIESQVRKLSGFPNIAYSIPIVKYKDNVGNIISDYSFLIKLEKGNILFDYLNNRDNLLNIDCHLGHKASYGYNTYVIKDIEFSKQKKDKKQKDILKYPKNEKFLNLGMLLPNLDKINIEKSYFELFTSHRKPFELSDGVNTFISFLNAGSVLSLKEKSEYTCMSKCILNEYNLMYDKAIVFGNSYLETLEV
>LR134472.1|VEH98066.1|1398234_1398915_+|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm3
MKIKYTVTTKSNCLIGNQTSAFSIGGVDQCTTLDENGKPIIHGSAMKGALRNIFRKECINNDIIKDFIKDFLNKEKDKYSELLKQMDEKSSKNIESIKKIITKISNLLNDVKAEYIFGIEGLNDTPRLFFSDLRVIDLETEDYFLIDTKTSIEEINGELISNPRTYKVVKPGIKFEGNIILKIDSDDEKIKKEIKAQLEKFNEEYYRIGNSKSRGYGIIAVEIEND
>LR134472.1|VEH98064.1|1396253_1398218_+|CRISPR-associated-protein-Cas10/Csm1,-subtype-III-A/MTUBE
MSFIVGISVEKIQKYIYQTLDDNRSEIQKDEQTLKEVIKASNTVSSTISKDIEKLFDINKKILWISGKYIFEVEDIEDKIKEKLKNLFKDIYLKYSGTLLINYVYFEKINLNNKKIIDKVNFYLKSNDTKRRIIVENNEILFSFQEEVNILNCDKNCDKNFIDYTSVYIKNMDELISDDKEGTNGKIAIVKADINNMGEIFSGITDYDTYMKLSLILENKITVNYLGKLISKNKNLTNKIFPLYIAGDDIFFAVKIESVLDSILILRNLIDDINDEINKKINSLSNDKSSKLNKLVISVGVEFTNNHQPIRYYREIVERELHNAKKFTKEKNSKEIKAILGTSIAGNMFYSYLEEQRIREKDCFFKFKTEILELIQLKNENIYTNTFIHNFLYALENIDISNKNNEDNIKKFVNTFLYFLCPDIRNAESKVIPKELYLKNYFMKMFMKNKKENEDENQIVYDKSNFKNAISKLKLILLLTDEKYISNIRLNQFRYIVFEKNDETRDFLNSNMFIKPLKYICNSGDSIEKCFILNTTDKGFNTFKKVPFHLSMLFKAKNLIEIGKKEKVKTLFANYAELIETKEKEYEKDNDIQKEEHFINYRLKFNKDKFNREFDNINGTEWLDRIILFYKYDQQRILYRIISGQNEKQRKTDK
>LR134472.1|VEH98062.1|1395706_1396252_+|Uncharacterised-protein
MNTSRDSIVRLATNIHIGTKINENNQPIQISTTPIKILCYISKTKRINSKNEGKDSFDVIIEAYQKKKDIKNSDKKINNIQNDKSIYLGNLNIVFKKNKNLYDILCQYNRNNIDYDNGKNIKKELTNRKISDYVIHKGKEEYSLLSFIFQFNQMLMMINNPMFFPHKAYVDMFNKNTNKGE
>LR134472.1|VEH98060.1|1395326_1395683_+|Uncharacterised-protein
MKKVDFIRDIKENYLKMERELVTQLNYNVSNHDLTAGTYREEIWADFFRRIVPKKFNIARSVFIIDSKENISKEVDIAIYDEQYTPYIFNYGLIKFIPIEAVAAVVQCKSTSLKKMIY
>LR134472.1|VEH98058.1|1394583_1395324_+|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)
MKIVLKFKTDNNFIPKDYHRFCIKFFKTAVSNYSDGNFFEKFFGDDYIKSDEKKYSWAVKFFKPKFFSNRIEVGENNFEITFKAPKTDVGTIFFNSFLEYKDKEFKISENNFIVLTDAKIVNEKKIVGNCARFKFCSPLVIREHNREDNTDRHITVEDEDFFDKFKENLKIHFPNYSNAIDDMKMDISEMKKAVVLFYGLYIDVSLGVIEIKADNNLLNEMLISSIGSKNASGFGLLQLIESWEMI
>LR134472.1|VEH98056.1|1393830_1394517_+|Uncharacterised-protein
MKDIYYYGMVAFVLVINSYYGIMFYRMRNKEYVSEVYNILMRNPKIKYAEKILKFYGLFHFVIAALGLMLFFIKNLYIILGFLFVIMILDSLFFVIISKKSEKLNHILNLVLVLIFIFLHLKFANDIETTQKIYNISYTIVIENGDSDFKELKEKSHLEEILKSEIKNISKMKDKKIELYDRKGKLLIKSDLYEAEVKNSAINEYEKLENIIKYKGKYYKIYEPKKLD
>LR134472.1|VEH98054.1|1391712_1393686_+|Transketolase
MEIKNLCINTMRTLSADAIQKAKSGHPGLPLGASPMAFTLFNDCMKISPKKPNWFDRDRFILSAGHGSMLLYSLLHLFDYGVSIEDIKNFRQIDSLTPGHPEYGHTAGIDATTGPLGQGVSMAVGMALAESHLASIFNTDDCKIVDHYTYSIVGDGCLMEGISNEASSLAGTLKLGKLIVLYDSNNITIEGDTSTAFGENVRGRYEALGWDTYFVADGNNINEIKEAIERAKLTDKPSLIEIKTKIGYGSTKQGSASAHGEPLGEDNIPTFKKNIGWEYEESFYVPEEVKKYMKEVVERKNTFVDEWEKQLGEYKVKYPEKYDLFQKFMKEEIDEEILNDSSITEFDKDMASRESSGIILNRFSKLLPNLFGGSADLGPSNKSTMKEFDYYSPENRSGKNIHFGVREHAMAAICNGISLHGGLLPYCATFFVFSDYLKPAVRLSALMNQGVIYVLTHDSIGVGEDGPTHEPIEHLAMFRSTPNVSMYRPCDAKETAYAWISALKNRKTPSCLALTRQKLTNLEETSAEALKGGYVLKDFGKDFEMIIIASGSEVGLAYKVCEKLLEENICTRLVSMPCMEEFEKQSKEYKERVLPNNIRKRVSIEALSTFGWGKYVGLDGISIGLDTFGASAPANLLFEKFGFTVDAVYDKIKKELF
>LR134472.1|VEH98052.1|1391098_1391416_-|Uncharacterised-protein
MFYFLVFIGIIGLIKRYLIIKKIIKVKEIPYYNENQISEKTKDDIIEKYGNFYLIISIIYFFIALLFRNSRYIYIVTSLSIIPILYYKWWLLKFVRYKTNDRFND
>LR134472.1|VEH98072.1|1402575_1403136_+|Uncharacterised-protein
MNEFNKYKILSAGKAFGHRAKIALLLLDSSTAYEELKEEAAQTSVSGSYDCVGGFPAEILERIIKELICRDIWYLPDNVKFWDRRFGSLFETKFFCYDNDVETWSKILNKFFVKLQWMPKREDYSSTKSFNNAWGYFAELLAVVKENNHPEFNDYYEIAIKNGMNEAVFEKKLKKLSEIKQSFINV
>LR134472.1|VEH98074.1|1403553_1403721_+|Uncharacterised-protein
MDILWTKNSKNLKIKGIEDSEYIPSVLYIIKKRIIFIPVLFLVALILAKIIVLIY
>LR134472.1|VEH98076.1|1404356_1404863_+|Uncharacterised-protein
MIKTLIMLGLVCLLAIFMMMDFIIVIPKFGSKHFGAPDDIKEMMEKIPDRASWVNIIGVCIMIVGFVGVIAVFIWAMVDTVKTDMSFFGAFIRFFIITEGYKLFDIIFFDYLMLTKLKLPAKIYPETAGAKGYDNFGFNTKSQMNKLIIFCVASILLAFILTVIIPLM
>LR134472.1|VEH98078.1|1404854_1405283_-|Uncharacterised-protein
MKLNSLTGIYITVCFYLNKSDPVKLNSLTGIYITVCLYLNKCKNKINFSDFNLHYSMSLFKPKEILKSRAIEKIYITVCLYLNCFYRRKDTLFRYIYITVCLYLNFINRFRPTSKFIFTLQYVSIYTKSSVLMKFIKYIYLH
>LR134472.1|VEH98080.1|1405818_1406520_+|Phosphorylated-carbohydrates-phosphatase-TM_1254
MKAIFFDLDGTLLPLDEKLFVDIYFAELSKVFSVYNIDSKKLVETIWTATHEIIKNDGKRTNEEAFWDKFNSNINIDLSDVKEVLKKFYANEFFTKLKKCSTENSLAKVAVELAKKNGRKVVLATNPVFPIDALVRLKWTGLDIDDFDYVTHYSNSSFSKPNPKYYLDLCEKLDVEPKDCLMIGNDERQDIFAASSAGMNCYLVTDYLYTYPECKVNCEKGSFEDLIEKLKTL
>LR134472.1|VEH98082.1|1406587_1407223_-|tRNA-(guanine-N(7)-)-methyltransferase
MRLRKKWWAVPEMKENAQVIFNAENLKGKWNEEFKNNNPINLELGCGKGKFISEIADVNKDINYCILDLDTNAIVYATRKIRDLELSNVRAIPTNIEKIDEFFNENSISRIYINFCNPWPKKRHHKRRLTHPNFLAKYNKLLIEEGEIHFKTDDDDLFKASLEYFNENGFEVILITYDLANFDYPQNIETEYENKFKSLGIKIKFLIAKKK
>LR134472.1|VEH98084.1|1407459_1409988_+|Ribonucleoside-diphosphate-reductase-subunit-alpha
MLRIIKRDLSEVSFDISKIENAIYKAFISVGDEDKKLLSKRLAEEVFESILQDKAENSSISVEEIQDYVEKTLTKNNHYETLKSYILYREKRNSLRKELNSFREYIEDESLIEVLAKIQKDFSTEGYELDRLCRKFLSFVKPNSTLNEKIELLIKASSELTSKENPNWEYISARIYAYKIHNEIVNYEKEWHIVDFKSKIQVLTKASLYGEYILENYSSDDIDELEKYIDNSRDELFTYSSLDLVYKRYLICDSHKKVIETMQEMFMGIAMHLAIPEKDRVSFAKKVYDVLSNLKATVATPTMSNARKPFHQLSSCFIDTVPDTLKGIYRSIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRWIKLANDTAVAVDQLGVRQGSCAVYLDVWHRDIPEFLNLRTNNGDDRMKAHDVFPAICFPNLFWRLAKENINSNWYLFCPHEVKEVMGFCLEDFYGEEWEEKYRLCIKEPRLDKRILTVKDLVKLILKSQVETGTPFIFNRDNANNANPNSHKGMIYSSNLCTEIMQNMKEILDVEDKILQIDGEDHVVTDVKAGDFVVCNLASLVLGNIDLKNDEEMEFVVSTMIRALDNVIDLNYYPTPFAKITNAKYRAIGLGTSGYHHALVKNKIMWQTEEHLEFMDKVYEKINYFAIKESSKIGEEKGSYKYFEGSEWQNGKYFEKRDYNSKEWIELKEKVSKNGLRNAYLLAVAPTGSTSIIAGTTAGVDPVMMRYFLEEKKGSIIPRVAPDLTPETFWLYENAHEVDQTWSIKAGGVRQRHIDQGQSLNLYITTDYKMSQILKLLILSCEVGLKSIYYIRSKSLDIEECDSCSA
>LR134472.1|VEH98086.1|1410000_1411050_+|Ribonucleoside-diphosphate-reductase-subunit-beta
MELNKKALFNENGDIELSKRKMINGNTTNLNDFNNVKYTWTTEWYRNAMNNFWIPEEINLFQDLKDYKILDEYEKTAFDKVLSFLIFLDSIQTANLPYIGEYITANEINLCLTIQAYQEAIHSQSYGYMLDSICSPEERTNILYQWRDDEHLLARNKFIGDLYNEFQVNKDPYSLVKTMVANYILEGVYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFKKMLLELQNEEPELFTEEKVAVYKDMIKTGVEQEIAWGKYVLGENIPGLTIQMVEDYIKYLGNLRSTALNFGKLYDGYDEEPESMKWVSEYSDPNAIKTDFFEAKPSAYSKSSVIDDDLDDL
>LR134472.1|VEH98088.1|1411201_1412218_+|Probable-zinc-transport-system-zinc-binding-lipoprotein-AdcA-precursor
MNIKLKKIISIIMISCMFLVACSSNKDEKNKEQKTTEQKGNKKVIYTTFFPVTDLTKRIVGDKMEVKTIIKGNQEPHSFELKAGDMQEIVKADLIIYNGANMESFISAIEDTVKDKNKFLNLSQGLTLLESGDGLEEEAEHEDGDKHEDEHGHGHGHNHKHGHDKTNPHTWLSVKNAIIQLDTIYKKVSSIDPENEAYYKENLKKAQDEFRALDKKFETELSKVKSKQKYFVVSHAAFNYLANDYGLKQVAVTGISPEDEPSAKQLQKIADFVKKYKINTIFFEGKATPKVAETLAKNTNTKTDTLYTMENLTDEEIEMGYLKLMELNLKALLKSFNE
>LR134472.1|VEH98090.1|1412227_1414144_+|Uncharacterised-protein
MSRNLKKKIYKMNLILVCSAVLLASCSKKQEEKEKTSTKKFEFVEKETNYKKDETTEVLIDAEIKKGDIVRSYKHGDHWHVFTKDGKEHITYTDPSKLGDGNSLSLVSVVSRNKLRGLNVRSILKHGDHWHVYTADGREYLTYEDPSSMFPNITVGTYVGSHNSHRNRRNSNNYSHANIIEEKKDRVVKILRHGDHWHIYTASGKEYISYTDPTSKYPDAEVGEYQGNHGDSQNNTENEKPSEKPNVPSASEKLYEARKNLNIVNVLGKNPVDRYDIVKILKHGDHYHIYDSKGNEGITYTDPRSLYPNAEFGEYKGNHGDENKKPFEWPKGVTKIVDHGDHWHLYIGDKEVGVVHENPRSHYPNAEYIKEGSDHSDIGVDEKELFTYESVKAEIKDKVIPYLDSNLRAMRHYGDLDTTLPVYGSNGVKKGIFYWLHGGHYHAITIKQIIQNAKAGQYGDCTAREIVAALKYIIQNPDKEIESKVTVDREEVVKYLMKVYNLKDRTDVNIIGDIAYVYINDETLTFSLADFEKVNGEIRYKKKLPEAPKKAKKDNEDYVDEEDTKDYSGYEEEKNKITKKNSEESKEKIVEETSAEKNNSVPKTEDKKVDDNKDVEKTKTDKPIKSEEKNEEKENKNN

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Crispr_ID: LR134472_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134472_3

1404904-1405657

TypeIII

Consensus_repeat	Method
GTTTAAATAGAAACATACTGTAATGTAAAT	PILER-CR
GTTTAAATAGAAACATACTGTAATGTAAAT	CRISPRCasFinder
GTTTAAATAGANACATACTGTAATGTAAAT	CRT

11 spacers

csm3gr7,cas10,PD-DExK,cas6

The CRISPR arrays of LR134472_3

>merge|LR134472|3|1404904-1405657|PILER-CR,CRISPRCasFinder,CRT
GTATAGATGGAAACATACTGTAATGTAAATATAAACTTGCTTGTGGGTCTAAATCTATTAATAAAGTTTAAATAGAGACATACTGTAATGTAAATATATCTAAATAAGGTATCTTTCCGCCTGTAAAAGCAGTTTAAATAGAGACATACTGTAATGTAAATTTTTTCTATTGCTCTACTTTTTAAAATTTCTTTTGGTTTAAATAGAGACATACTGTAATGTAAATTAAAGTCGCTAAAATTTATCTTATTTTTGCATTTGTTTAAATAGAGACATACTGTAATGTAAATACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTTGTTTAAATAGAAACATACTGTAATGTAAATACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTTGTTTAAATAGAAACATACTGTAATGTAAATATTTTAAGCGAGTTTTTAGCTTATATAAATTCCATTTATGAGTTTAAATAGAAACATACTGTAATGTAAATTTAGCTCATTATATTCTCTTAAACATTTTGAATGCTCGTTTAAATAGAAACATACTGTAATGTAAATATCAAAAATTTCTAAGTAATTATTTTGCTTTTTTGTTTAAATAGCAACATACTGTAATGTAAATGTAGCAATAGTTGAAGATGAAAACGGATTACAATCGTTTAAATAGAAACATACTGTAATGTAAATTATTGTCTTTCAAGTATTTTGAATAAAACTCTGTGGTTTAAATAGCAACATATTGTAAGTAAATT

>LR134472|3|2|1404904-1405592|PILER-CR
GTATAGATGGAAACATACTGTAATGTAAAT	ATAAACTTGCTTGTGGGTCTAAATCTATTAATAAA
GTTTAAATAGAGACATACTGTAATGTAAAT	ATATCTAAATAAGGTATCTTTCCGCCTGTAAAAGCA
GTTTAAATAGAGACATACTGTAATGTAAAT	TTTTTCTATTGCTCTACTTTTTAAAATTTCTTTTG
GTTTAAATAGAGACATACTGTAATGTAAAT	TAAAGTCGCTAAAATTTATCTTATTTTTGCATTT
GTTTAAATAGAGACATACTGTAATGTAAAT	ACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTT
GTTTAAATAGAAACATACTGTAATGTAAAT	ACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTT
GTTTAAATAGAAACATACTGTAATGTAAAT	ATTTTAAGCGAGTTTTTAGCTTATATAAATTCCATTTATGA
GTTTAAATAGAAACATACTGTAATGTAAAT	TTAGCTCATTATATTCTCTTAAACATTTTGAATGCTC
GTTTAAATAGAAACATACTGTAATGTAAAT	ATCAAAAATTTCTAAGTAATTATTTTGCTTTTTT
GTTTAAATAGCAACATACTGTAATGTAAAT	GTAGCAATAGTTGAAGATGAAAACGGATTACAATC
GTTTAAATAGAAACATACTGTAATGTAAAT

>LR134472|3|3|1404904-1405657|CRISPRCasFinder
GTATAGATGGAAACATACTGTAATGTAAAT	ATAAACTTGCTTGTGGGTCTAAATCTATTAATAAA
GTTTAAATAGAGACATACTGTAATGTAAAT	ATATCTAAATAAGGTATCTTTCCGCCTGTAAAAGCA
GTTTAAATAGAGACATACTGTAATGTAAAT	TTTTTCTATTGCTCTACTTTTTAAAATTTCTTTTG
GTTTAAATAGAGACATACTGTAATGTAAAT	TAAAGTCGCTAAAATTTATCTTATTTTTGCATTT
GTTTAAATAGAGACATACTGTAATGTAAAT	ACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTT
GTTTAAATAGAAACATACTGTAATGTAAAT	ACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTT
GTTTAAATAGAAACATACTGTAATGTAAAT	ATTTTAAGCGAGTTTTTAGCTTATATAAATTCCATTTATGA
GTTTAAATAGAAACATACTGTAATGTAAAT	TTAGCTCATTATATTCTCTTAAACATTTTGAATGCTC
GTTTAAATAGAAACATACTGTAATGTAAAT	ATCAAAAATTTCTAAGTAATTATTTTGCTTTTTT
GTTTAAATAGCAACATACTGTAATGTAAAT	GTAGCAATAGTTGAAGATGAAAACGGATTACAATC
GTTTAAATAGAAACATACTGTAATGTAAAT	TATTGTCTTTCAAGTATTTTGAATAAAACTCTGTG
GTTTAAATAGCAACATATTGTAAGTAAATT

>LR134472|3|2|1404904-1405657|CRT
GTATAGATGGAAACATACTGTAATGTAAAT	ATAAACTTGCTTGTGGGTCTAAATCTATTAATAAA
GTTTAAATAGAGACATACTGTAATGTAAAT	ATATCTAAATAAGGTATCTTTCCGCCTGTAAAAGCA
GTTTAAATAGAGACATACTGTAATGTAAAT	TTTTTCTATTGCTCTACTTTTTAAAATTTCTTTTG
GTTTAAATAGAGACATACTGTAATGTAAAT	TAAAGTCGCTAAAATTTATCTTATTTTTGCATTT
GTTTAAATAGAGACATACTGTAATGTAAAT	ACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTT
GTTTAAATAGAAACATACTGTAATGTAAAT	ACCTGTTAAAGAGTTTAACTTCACAGGATCACTCTT
GTTTAAATAGAAACATACTGTAATGTAAAT	ATTTTAAGCGAGTTTTTAGCTTATATAAATTCCATTTATGA
GTTTAAATAGAAACATACTGTAATGTAAAT	TTAGCTCATTATATTCTCTTAAACATTTTGAATGCTC
GTTTAAATAGAAACATACTGTAATGTAAAT	ATCAAAAATTTCTAAGTAATTATTTTGCTTTTTT
GTTTAAATAGCAACATACTGTAATGTAAAT	GTAGCAATAGTTGAAGATGAAAACGGATTACAATC
GTTTAAATAGAAACATACTGTAATGTAAAT	TATTGTCTTTCAAGTATTTTGAATAAAACTCTGTG
GTTTAAATAGCAACATATTGTAAGTAAATT

Protein	Signature genes	Signature genes Name	Protein_function
LR134472.1\|VEH98074.1\|1403553_1403721_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98058.1\|1394583_1395324_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
LR134472.1\|VEH98096.1\|1416374_1416638_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98068.1\|1398926_1399916_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98088.1\|1411201_1412218_+\|Probable-zinc-transport-system-zinc-binding-lipoprotein-AdcA-precursor	unknown	unknown	gnl\|CDD\|376518
LR134472.1\|VEH98080.1\|1405818_1406520_+\|Phosphorylated-carbohydrates-phosphatase-TM_1254	unknown	unknown	gnl\|CDD\|223620
LR134472.1\|VEH98064.1\|1396253_1398218_+\|CRISPR-associated-protein-Cas10/Csm1,-subtype-III-A/MTUBE	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|274209
LR134472.1\|VEH98062.1\|1395706_1396252_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98082.1\|1406587_1407223_-\|tRNA-(guanine-N(7)-)-methyltransferase	unknown	unknown	gnl\|CDD\|234649
LR134472.1\|VEH98094.1\|1414666_1416298_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
LR134472.1\|VEH98070.1\|1399917_1400736_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98084.1\|1407459_1409988_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|237077
LR134472.1\|VEH98086.1\|1410000_1411050_+\|Ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|236591
LR134472.1\|VEH98066.1\|1398234_1398915_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm3	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|187857
LR134472.1\|VEH98098.1\|1416648_1417728_+\|Ribonuclease-E	unknown	unknown	gnl\|CDD\|378414
LR134472.1\|VEH98076.1\|1404356_1404863_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98090.1\|1412227_1414144_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98072.1\|1402575_1403136_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98060.1\|1395326_1395683_+\|Uncharacterised-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown
LR134472.1\|VEH98092.1\|1414370_1414655_+\|co-chaperonin-GroES	unknown	unknown	gnl\|CDD\|178988

Protein	Function_ID	Function_description	E-value
LR134472.1\|VEH98058.1\|1394583_1395324_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.45594e-13
LR134472.1\|VEH98084.1\|1407459_1409988_+\|Ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|237077	PRK12364, PRK12364, ribonucleoside-diphosphate reductase subunit alpha.	0
LR134472.1\|VEH98086.1\|1410000_1411050_+\|Ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|236591	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	1.99413e-128
LR134472.1\|VEH98066.1\|1398234_1398915_+\|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm3	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	1.01724e-09
LR134472.1\|VEH98080.1\|1405818_1406520_+\|Phosphorylated-carbohydrates-phosphatase-TM_1254	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	4.00559e-18
LR134472.1\|VEH98064.1\|1396253_1398218_+\|CRISPR-associated-protein-Cas10/Csm1,-subtype-III-A/MTUBE	gnl\|CDD\|274209	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.	5.27947e-09
LR134472.1\|VEH98088.1\|1411201_1412218_+\|Probable-zinc-transport-system-zinc-binding-lipoprotein-AdcA-precursor	gnl\|CDD\|376518	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic. ZnuA includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum. ZnuA is part of the bacterial zinc-uptake complex ZnuABC, whose components are the following families, ZinT, pfam09223, pfam00950, pfam00005, all of which are regulated by the transcription-regulator family FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), a high-affinity zinc-uptake protein. In Gram-negative bacteria the ZnuABC transporter system ensures an adequate import of zinc in Zn2+-poor environments, such as those encountered by pathogens within the infected host.	2.50775e-101
LR134472.1\|VEH98098.1\|1416648_1417728_+\|Ribonuclease-E	gnl\|CDD\|378414	pfam10150, RNase_E_G, Ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs.	3.38962e-42
LR134472.1\|VEH98082.1\|1406587_1407223_-\|tRNA-(guanine-N(7)-)-methyltransferase	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	7.50539e-70
LR134472.1\|VEH98094.1\|1414666_1416298_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
LR134472.1\|VEH98092.1\|1414370_1414655_+\|co-chaperonin-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	3.49999e-30

>LR134472.1|VEH98076.1|1404356_1404863_+|Uncharacterised-protein
MIKTLIMLGLVCLLAIFMMMDFIIVIPKFGSKHFGAPDDIKEMMEKIPDRASWVNIIGVCIMIVGFVGVIAVFIWAMVDTVKTDMSFFGAFIRFFIITEGYKLFDIIFFDYLMLTKLKLPAKIYPETAGAKGYDNFGFNTKSQMNKLIIFCVASILLAFILTVIIPLM
>LR134472.1|VEH98074.1|1403553_1403721_+|Uncharacterised-protein
MDILWTKNSKNLKIKGIEDSEYIPSVLYIIKKRIIFIPVLFLVALILAKIIVLIY
>LR134472.1|VEH98072.1|1402575_1403136_+|Uncharacterised-protein
MNEFNKYKILSAGKAFGHRAKIALLLLDSSTAYEELKEEAAQTSVSGSYDCVGGFPAEILERIIKELICRDIWYLPDNVKFWDRRFGSLFETKFFCYDNDVETWSKILNKFFVKLQWMPKREDYSSTKSFNNAWGYFAELLAVVKENNHPEFNDYYEIAIKNGMNEAVFEKKLKKLSEIKQSFINV
>LR134472.1|VEH98070.1|1399917_1400736_+|Uncharacterised-protein
MKKIDLKLTTISKVILSPRDSGALYKDIDYSFLNYNHGKEISKEVNMIYPFYSYTNRALLMENNIENIKYYIPASSLKGAILSCIKEDDIKRTLLFNDININPTDISLENLFKYQYLYSETAKIKFEKFFENVGIETLQNGKSYDFYINLKENIAFESILKDLKSKTIEKLNNYMSKLEIVIKKITDNKTNVNYEFNMEISKELMKIINNINSELNNINDDEYILFLGGFKGKINSLNGKINIDDIKSGFYLCDIGGKKYLPYGLVKLKIGN
>LR134472.1|VEH98068.1|1398926_1399916_+|Uncharacterised-protein
MYIFEFKLKRIGEITLLPDSQKLFGFLMGKLKESYPDEKIGEFVESVERKESICMISNLFPTDYRPMPKSYILDILDKLNIGINDKKLYEKIKNIEFIKREDLKKLINLTKNTTTNINNINLDNYNYIKKEDTFIQKFKIESQVRKLSGFPNIAYSIPIVKYKDNVGNIISDYSFLIKLEKGNILFDYLNNRDNLLNIDCHLGHKASYGYNTYVIKDIEFSKQKKDKKQKDILKYPKNEKFLNLGMLLPNLDKINIEKSYFELFTSHRKPFELSDGVNTFISFLNAGSVLSLKEKSEYTCMSKCILNEYNLMYDKAIVFGNSYLETLEV
>LR134472.1|VEH98066.1|1398234_1398915_+|CRISPR-type-III-A/MTUBE-associated-RAMP-protein-Csm3
MKIKYTVTTKSNCLIGNQTSAFSIGGVDQCTTLDENGKPIIHGSAMKGALRNIFRKECINNDIIKDFIKDFLNKEKDKYSELLKQMDEKSSKNIESIKKIITKISNLLNDVKAEYIFGIEGLNDTPRLFFSDLRVIDLETEDYFLIDTKTSIEEINGELISNPRTYKVVKPGIKFEGNIILKIDSDDEKIKKEIKAQLEKFNEEYYRIGNSKSRGYGIIAVEIEND
>LR134472.1|VEH98064.1|1396253_1398218_+|CRISPR-associated-protein-Cas10/Csm1,-subtype-III-A/MTUBE
MSFIVGISVEKIQKYIYQTLDDNRSEIQKDEQTLKEVIKASNTVSSTISKDIEKLFDINKKILWISGKYIFEVEDIEDKIKEKLKNLFKDIYLKYSGTLLINYVYFEKINLNNKKIIDKVNFYLKSNDTKRRIIVENNEILFSFQEEVNILNCDKNCDKNFIDYTSVYIKNMDELISDDKEGTNGKIAIVKADINNMGEIFSGITDYDTYMKLSLILENKITVNYLGKLISKNKNLTNKIFPLYIAGDDIFFAVKIESVLDSILILRNLIDDINDEINKKINSLSNDKSSKLNKLVISVGVEFTNNHQPIRYYREIVERELHNAKKFTKEKNSKEIKAILGTSIAGNMFYSYLEEQRIREKDCFFKFKTEILELIQLKNENIYTNTFIHNFLYALENIDISNKNNEDNIKKFVNTFLYFLCPDIRNAESKVIPKELYLKNYFMKMFMKNKKENEDENQIVYDKSNFKNAISKLKLILLLTDEKYISNIRLNQFRYIVFEKNDETRDFLNSNMFIKPLKYICNSGDSIEKCFILNTTDKGFNTFKKVPFHLSMLFKAKNLIEIGKKEKVKTLFANYAELIETKEKEYEKDNDIQKEEHFINYRLKFNKDKFNREFDNINGTEWLDRIILFYKYDQQRILYRIISGQNEKQRKTDK
>LR134472.1|VEH98062.1|1395706_1396252_+|Uncharacterised-protein
MNTSRDSIVRLATNIHIGTKINENNQPIQISTTPIKILCYISKTKRINSKNEGKDSFDVIIEAYQKKKDIKNSDKKINNIQNDKSIYLGNLNIVFKKNKNLYDILCQYNRNNIDYDNGKNIKKELTNRKISDYVIHKGKEEYSLLSFIFQFNQMLMMINNPMFFPHKAYVDMFNKNTNKGE
>LR134472.1|VEH98060.1|1395326_1395683_+|Uncharacterised-protein
MKKVDFIRDIKENYLKMERELVTQLNYNVSNHDLTAGTYREEIWADFFRRIVPKKFNIARSVFIIDSKENISKEVDIAIYDEQYTPYIFNYGLIKFIPIEAVAAVVQCKSTSLKKMIY
>LR134472.1|VEH98058.1|1394583_1395324_+|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)
MKIVLKFKTDNNFIPKDYHRFCIKFFKTAVSNYSDGNFFEKFFGDDYIKSDEKKYSWAVKFFKPKFFSNRIEVGENNFEITFKAPKTDVGTIFFNSFLEYKDKEFKISENNFIVLTDAKIVNEKKIVGNCARFKFCSPLVIREHNREDNTDRHITVEDEDFFDKFKENLKIHFPNYSNAIDDMKMDISEMKKAVVLFYGLYIDVSLGVIEIKADNNLLNEMLISSIGSKNASGFGLLQLIESWEMI
>LR134472.1|VEH98080.1|1405818_1406520_+|Phosphorylated-carbohydrates-phosphatase-TM_1254
MKAIFFDLDGTLLPLDEKLFVDIYFAELSKVFSVYNIDSKKLVETIWTATHEIIKNDGKRTNEEAFWDKFNSNINIDLSDVKEVLKKFYANEFFTKLKKCSTENSLAKVAVELAKKNGRKVVLATNPVFPIDALVRLKWTGLDIDDFDYVTHYSNSSFSKPNPKYYLDLCEKLDVEPKDCLMIGNDERQDIFAASSAGMNCYLVTDYLYTYPECKVNCEKGSFEDLIEKLKTL
>LR134472.1|VEH98082.1|1406587_1407223_-|tRNA-(guanine-N(7)-)-methyltransferase
MRLRKKWWAVPEMKENAQVIFNAENLKGKWNEEFKNNNPINLELGCGKGKFISEIADVNKDINYCILDLDTNAIVYATRKIRDLELSNVRAIPTNIEKIDEFFNENSISRIYINFCNPWPKKRHHKRRLTHPNFLAKYNKLLIEEGEIHFKTDDDDLFKASLEYFNENGFEVILITYDLANFDYPQNIETEYENKFKSLGIKIKFLIAKKK
>LR134472.1|VEH98084.1|1407459_1409988_+|Ribonucleoside-diphosphate-reductase-subunit-alpha
MLRIIKRDLSEVSFDISKIENAIYKAFISVGDEDKKLLSKRLAEEVFESILQDKAENSSISVEEIQDYVEKTLTKNNHYETLKSYILYREKRNSLRKELNSFREYIEDESLIEVLAKIQKDFSTEGYELDRLCRKFLSFVKPNSTLNEKIELLIKASSELTSKENPNWEYISARIYAYKIHNEIVNYEKEWHIVDFKSKIQVLTKASLYGEYILENYSSDDIDELEKYIDNSRDELFTYSSLDLVYKRYLICDSHKKVIETMQEMFMGIAMHLAIPEKDRVSFAKKVYDVLSNLKATVATPTMSNARKPFHQLSSCFIDTVPDTLKGIYRSIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRWIKLANDTAVAVDQLGVRQGSCAVYLDVWHRDIPEFLNLRTNNGDDRMKAHDVFPAICFPNLFWRLAKENINSNWYLFCPHEVKEVMGFCLEDFYGEEWEEKYRLCIKEPRLDKRILTVKDLVKLILKSQVETGTPFIFNRDNANNANPNSHKGMIYSSNLCTEIMQNMKEILDVEDKILQIDGEDHVVTDVKAGDFVVCNLASLVLGNIDLKNDEEMEFVVSTMIRALDNVIDLNYYPTPFAKITNAKYRAIGLGTSGYHHALVKNKIMWQTEEHLEFMDKVYEKINYFAIKESSKIGEEKGSYKYFEGSEWQNGKYFEKRDYNSKEWIELKEKVSKNGLRNAYLLAVAPTGSTSIIAGTTAGVDPVMMRYFLEEKKGSIIPRVAPDLTPETFWLYENAHEVDQTWSIKAGGVRQRHIDQGQSLNLYITTDYKMSQILKLLILSCEVGLKSIYYIRSKSLDIEECDSCSA
>LR134472.1|VEH98086.1|1410000_1411050_+|Ribonucleoside-diphosphate-reductase-subunit-beta
MELNKKALFNENGDIELSKRKMINGNTTNLNDFNNVKYTWTTEWYRNAMNNFWIPEEINLFQDLKDYKILDEYEKTAFDKVLSFLIFLDSIQTANLPYIGEYITANEINLCLTIQAYQEAIHSQSYGYMLDSICSPEERTNILYQWRDDEHLLARNKFIGDLYNEFQVNKDPYSLVKTMVANYILEGVYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFKKMLLELQNEEPELFTEEKVAVYKDMIKTGVEQEIAWGKYVLGENIPGLTIQMVEDYIKYLGNLRSTALNFGKLYDGYDEEPESMKWVSEYSDPNAIKTDFFEAKPSAYSKSSVIDDDLDDL
>LR134472.1|VEH98088.1|1411201_1412218_+|Probable-zinc-transport-system-zinc-binding-lipoprotein-AdcA-precursor
MNIKLKKIISIIMISCMFLVACSSNKDEKNKEQKTTEQKGNKKVIYTTFFPVTDLTKRIVGDKMEVKTIIKGNQEPHSFELKAGDMQEIVKADLIIYNGANMESFISAIEDTVKDKNKFLNLSQGLTLLESGDGLEEEAEHEDGDKHEDEHGHGHGHNHKHGHDKTNPHTWLSVKNAIIQLDTIYKKVSSIDPENEAYYKENLKKAQDEFRALDKKFETELSKVKSKQKYFVVSHAAFNYLANDYGLKQVAVTGISPEDEPSAKQLQKIADFVKKYKINTIFFEGKATPKVAETLAKNTNTKTDTLYTMENLTDEEIEMGYLKLMELNLKALLKSFNE
>LR134472.1|VEH98090.1|1412227_1414144_+|Uncharacterised-protein
MSRNLKKKIYKMNLILVCSAVLLASCSKKQEEKEKTSTKKFEFVEKETNYKKDETTEVLIDAEIKKGDIVRSYKHGDHWHVFTKDGKEHITYTDPSKLGDGNSLSLVSVVSRNKLRGLNVRSILKHGDHWHVYTADGREYLTYEDPSSMFPNITVGTYVGSHNSHRNRRNSNNYSHANIIEEKKDRVVKILRHGDHWHIYTASGKEYISYTDPTSKYPDAEVGEYQGNHGDSQNNTENEKPSEKPNVPSASEKLYEARKNLNIVNVLGKNPVDRYDIVKILKHGDHYHIYDSKGNEGITYTDPRSLYPNAEFGEYKGNHGDENKKPFEWPKGVTKIVDHGDHWHLYIGDKEVGVVHENPRSHYPNAEYIKEGSDHSDIGVDEKELFTYESVKAEIKDKVIPYLDSNLRAMRHYGDLDTTLPVYGSNGVKKGIFYWLHGGHYHAITIKQIIQNAKAGQYGDCTAREIVAALKYIIQNPDKEIESKVTVDREEVVKYLMKVYNLKDRTDVNIIGDIAYVYINDETLTFSLADFEKVNGEIRYKKKLPEAPKKAKKDNEDYVDEEDTKDYSGYEEEKNKITKKNSEESKEKIVEETSAEKNNSVPKTEDKKVDDNKDVEKTKTDKPIKSEEKNEEKENKNN
>LR134472.1|VEH98092.1|1414370_1414655_+|co-chaperonin-GroES
MKLKPIGDKLVIEMVEVEEKTSSGIVLPTSAKEAPSVAKVLAIGDEILKDEDKKDLIKVGDKIIFSKYAGTEVKLDKKEYIVVKIADVLAVVED
>LR134472.1|VEH98094.1|1414666_1416298_+|chaperonin-GroEL
MAKEIKFNEEARKGMEAGINKLSNTVKVTLGPKGRNVVLDKKFGSPLITNDGVTIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVAAGANPMIIQKGIKKAVDKAVEGIKEFSKPVETKESIAQVASISAADEEVGKLISDAMEKVGKDGVITVEESRSMGTTLEVVEGMQFDRGYVSPYMVTNTEKMEAELEDPYILITDKKITNIQEVLPVLEQIVQQGKPLLIIADDVEGEAMATLVVNKLRGTFNCVAVKAPAFGDRRKDMLQDIAILTGGTVISEDLGYELKETSIEMLGKARRVTVGKELTVIVNGAGEQSAIEERVALIRNQIEISDSEYDRDKLQERLAKLAGGVAVIQVGAATETELKERKLRIEDALAATRAAVEEGIVPGGGTVLLNVIPKVKALLEGTNGDERTGVNIIVKALEEPVRQIAINAGLEGSVIVENVKNAEVGIGFDALSEKYVNMLESGIVDPTKVTRSALQNASSVASMVLTTEAAVADVTKDEPMGQMPGGMNPGMGYM
>LR134472.1|VEH98096.1|1416374_1416638_+|Uncharacterised-protein
MIKLFFNIMFLVSISVLVIHQSFYYYQFNKIFKKLKILSEEKNIREDRNLILEYNYNLAQLNYIFCVYFCGLMKKILYKKNNFEYVE
>LR134472.1|VEH98098.1|1416648_1417728_+|Ribonuclease-E
MKDYLFISKDEEKIEYGKVLNSKLNSYFVKKFNDFEIGDIYRVRVVKKVDALQCFFVQLKNGKNGFLDFKDAIGEVKVGDVIFVEIYKINGGEKAPNVSMNFSVSSMFSAVSYKNREEILISKKLKEHNFDLEQIKNIKSNFSVKLRTKSIDCDEYTLLNDIRKNVEKMQEIVDSLNNLPVPKLIYKKENFLDDFLFENEKHCCILNDKEIYKSFKDNKFLKNELKYDDEYSPRYDYNIGVYLEGLNKKTVEVEDINIVIEKMEALTVIDVNSKKKTSEINKSKNALSVNLIAIEEIIRQISFRDISGIIIVDFINMKTKEKEILEEKIKEIQIFDNKIWNFHGFTKLGLYEITRQRGK

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Crispr_ID: LR134472_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134472_4

1453027-1453138

Orphan

Consensus_repeat	Method
AGTTTTATGCCTTGTGATAAAACTATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134472_4

>merge|LR134472|4|1453027-1453138|CRISPRCasFinder
AGTTTTATGCCTTGTGATAAAACTATATTAATTTCATCGTAATTACCAAAAAAATAATCAAAAAGGAATTACGATATAATTTAAAAGTTTTATGCCTTGTGATAAACTATAA

>LR134472|4|4|1453027-1453138|CRISPRCasFinder
AGTTTTATGCCTTGTGATAAAACTATA	TTAATTTCATCGTAATTACCAAAAAAATAATCAAAAAGGAATTACGATATAATTTAAA
AGTTTTATGCCTTGTGATAAACTATAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134472.1\|VEH98159.1\|1449891_1450260_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134472.1\|VEH98163.1\|1450957_1452376_+\|Putative-HMP/thiamine-import-ATP-binding-protein-YkoD	unknown	unknown	gnl\|CDD\|213192
LR134472.1\|VEH98151.1\|1445018_1445444_+\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
LR134472.1\|VEH98161.1\|1450278_1450971_+\|ABC-type-cobalt-transport-system,-permease-component-CbiQ-and-related-transporters	unknown	unknown	gnl\|CDD\|223692
LR134472.1\|VEH98181.1\|1462291_1463362_+\|Elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
LR134472.1\|VEH98155.1\|1446433_1448170_+\|Lipid-A-export-ATP-binding/permease-protein-MsbA	unknown	unknown	gnl\|CDD\|224055
LR134472.1\|VEH98147.1\|1444127_1444334_+\|Preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|376355
LR134472.1\|VEH98177.1\|1460968_1461247_+\|DNA-binding-protein-HU	unknown	unknown	gnl\|CDD\|259853
LR134472.1\|VEH98157.1\|1448172_1449888_+\|Multidrug-resistance-ABC-transporter-ATP-binding-and-permease-protein	unknown	unknown	gnl\|CDD\|224055
LR134472.1\|VEH98171.1\|1455658_1456246_+\|Peptidyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|376485
LR134472.1\|VEH98149.1\|1444367_1444907_+\|Transcription-antitermination-protein-nusG	unknown	unknown	gnl\|CDD\|180161
LR134472.1\|VEH98173.1\|1456282_1459789_+\|Transcription-repair-coupling-factor	unknown	unknown	gnl\|CDD\|224118
LR134472.1\|VEH98153.1\|1445490_1446186_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
LR134472.1\|VEH98183.1\|1463507_1464902_-\|Multidrug-export-protein-mepA	unknown	unknown	gnl\|CDD\|240543
LR134472.1\|VEH98179.1\|1461442_1462198_+\|Vegetative-protein-209	unknown	unknown	gnl\|CDD\|235396
LR134472.1\|VEH98167.1\|1453304_1454690_+\|Bifunctional-protein-GlmU	unknown	unknown	gnl\|CDD\|184643
LR134472.1\|VEH98175.1\|1459863_1460850_+\|Foldase-protein-prsA-1-precursor	unknown	unknown	gnl\|CDD\|234605
LR134472.1\|VEH98185.1\|1465282_1466329_+\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270262
LR134472.1\|VEH98165.1\|1452365_1452941_+\|conserved-hypothetical-integral-membrane-protein	unknown	unknown	gnl\|CDD\|370580
LR134472.1\|VEH98169.1\|1454706_1455669_+\|Ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929

Protein	Function_ID	Function_description	E-value
LR134472.1\|VEH98163.1\|1450957_1452376_+\|Putative-HMP/thiamine-import-ATP-binding-protein-YkoD	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	4.50945e-78
LR134472.1\|VEH98151.1\|1445018_1445444_+\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	1.5743e-89
LR134472.1\|VEH98161.1\|1450278_1450971_+\|ABC-type-cobalt-transport-system,-permease-component-CbiQ-and-related-transporters	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	2.17847e-07
LR134472.1\|VEH98181.1\|1462291_1463362_+\|Elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	1.20193e-117
LR134472.1\|VEH98155.1\|1446433_1448170_+\|Lipid-A-export-ATP-binding/permease-protein-MsbA	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.31483e-117
LR134472.1\|VEH98147.1\|1444127_1444334_+\|Preprotein-translocase-subunit-SecE	gnl\|CDD\|376355	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex. SecE is part of the SecYEG complex in bacteria which translocates proteins from the cytoplasm. In eukaryotes the complex, made from Sec61-gamma and Sec61-alpha translocates protein from the cytoplasm to the ER. Archaea have a similar complex.	5.69179e-11
LR134472.1\|VEH98177.1\|1460968_1461247_+\|DNA-binding-protein-HU	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	4.33059e-39
LR134472.1\|VEH98157.1\|1448172_1449888_+\|Multidrug-resistance-ABC-transporter-ATP-binding-and-permease-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.03742e-127
LR134472.1\|VEH98171.1\|1455658_1456246_+\|Peptidyl-tRNA-hydrolase	gnl\|CDD\|376485	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase.	6.49277e-92
LR134472.1\|VEH98149.1\|1444367_1444907_+\|Transcription-antitermination-protein-nusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	3.3843e-67
LR134472.1\|VEH98173.1\|1456282_1459789_+\|Transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
LR134472.1\|VEH98153.1\|1445490_1446186_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	5.67674e-144
LR134472.1\|VEH98183.1\|1463507_1464902_-\|Multidrug-export-protein-mepA	gnl\|CDD\|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	5.86671e-125
LR134472.1\|VEH98179.1\|1461442_1462198_+\|Vegetative-protein-209	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	6.50147e-166
LR134472.1\|VEH98167.1\|1453304_1454690_+\|Bifunctional-protein-GlmU	gnl\|CDD\|184643	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
LR134472.1\|VEH98175.1\|1459863_1460850_+\|Foldase-protein-prsA-1-precursor	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	4.91267e-34
LR134472.1\|VEH98185.1\|1465282_1466329_+\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.42105e-117
LR134472.1\|VEH98165.1\|1452365_1452941_+\|conserved-hypothetical-integral-membrane-protein	gnl\|CDD\|370580	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep). This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. It is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.	2.70707e-32
LR134472.1\|VEH98169.1\|1454706_1455669_+\|Ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0

>LR134472.1|VEH98165.1|1452365_1452941_+|conserved-hypothetical-integral-membrane-protein
MKIKDLVLVAILGALNLVVSMIVTFALFPLGPYAHCISPGIAGLFAGTVFVFMCNKVGKKGSFLLFSGVYLIAMAGVGFYLPWIISYTVSFIIGEVILSYMGYQNKIAQFIAFGLIQVGSECGQIIPVNFFLESFKKTWVGKNGVTESAINEMIKFSTGTYGLINLLIVFILGGLGVVIGNKILKKHFKKI
>LR134472.1|VEH98163.1|1450957_1452376_+|Putative-HMP/thiamine-import-ATP-binding-protein-YkoD
MIKFENVSFTYENSDKKALEDISFEINKGELVLITGASGSGKSTIYKCINGLIPHIYDGELLGNIFIDDKNTKDCENYELCKIIGSVSQNPRGQFFTDNTTSELAFTLENLGYEVKEIVKKIENISNFFCISNILNKNVLEISGGEKQKISIACVSILDAKTLIFDEPSANLDYLGIELLKEIFLKLKKNGYTIVVVEHRIFYLKEIFDRLIHINKGKLIVNLDRKDALNYSAEDLRSLNPFDRELTMINKCSREEKILEIRNLKFKDIIKDISFDVYRGEIVGLVGKNGVGKSTISKLISGIYNKTSGKISSKSLPFVLMQDVDYQLFSESVFSEFFLSKKDLTDDEVLEILKVINLYEKRNCHPFSLSGGEKQRLLMGICAKSDSDILILDEPTSGLDFNNMTIISDIIKKLAKDKAIILISHDYELLSRVVDRVIFLENGKITEDFILKEKNQLTNIFQKIKGGKENEN
>LR134472.1|VEH98161.1|1450278_1450971_+|ABC-type-cobalt-transport-system,-permease-component-CbiQ-and-related-transporters
MIEQRRINLFVLIFMNLIFGTLILVWNNFKLDMIYFCICSLILIYSGKTKRFIKFLIFYLICLYIVFYIKLPDDSFFSFIGFISYSNVKMCPTYMIASFIVLDIRTSELIYVLGKLGFGKKIRFACTITLKFIPIYFAEKRIIKNALKLRGIDVSFTKPIKRFEYYIVPTLFRASNIANEMTESAYTRCAMCTDNMNSIYYKKFDMVDFILIVMLILLVASWGGGFIDKI
>LR134472.1|VEH98159.1|1449891_1450260_+|Uncharacterised-protein
MSAVFTALYIVKQQGSRVPTRCEASRKGGVVIVKQQGSRVPTRCKASRKGGVVIVKQQGSRVPTRCEASRKGGVVIVKQQGSRVPTRCEASRKGGVVIVKQQGSRVPTRCEASRKGGVLINF
>LR134472.1|VEH98157.1|1448172_1449888_+|Multidrug-resistance-ABC-transporter-ATP-binding-and-permease-protein
MKMLKRMFQLTDKGTAGIVKASIASFFSYCSLMIPMILLMFFVQNVIEGKENSITFFVIGILIMLVVMYILMSIEYDCLYNETYKESANIRIEIAEILRKLPLSFFSKHDVSDLSQTIMKDVSVIEHAISHAIPKAIGLIFYLILIVIMLLIYNFKLALCILIPIILATGFILITKKIQVNGNKKYYNVMRGISEDFQESIELQQEIKSYGQVDKITKKIYDDIDYSEKIHIKAEGKMVLPLSISTNIQNLTLGATILFGTALYLKGEASILYLIGYIMCASKIIDAVNGMLSNFAELMYLDGNLQRIRELKSTKIQTGEAKELHNFDIEFKNVEFGYGENKVINDISFVAKQGEVTALVGPSGCGKTTVLRLMSRLYDYDSGKIIIDGNDIKGIETESLFENISIVFQEVTLFNSSILENIRFGNKNATDEQVKEAARLANCEEFIEKLPEKYNTLIGENGSKLSGGERQRISIARAFLKNAPIILLDEISASLDVENEMKIQESLNKLIKNKTVLVISHRMKSIENANKIIVMENGKIESQGNHNELLEKSKVYNTMVKNSSLAENYSY
>LR134472.1|VEH98155.1|1446433_1448170_+|Lipid-A-export-ATP-binding/permease-protein-MsbA
MNIYKKLFKYVPDKKHLVYIAIFMSVISSALSILPYWYLYKFLNEFLLKKDFTQAKNYAITIFVIMLLQSLIYFISVGFTHLFAFRLETNLRKAGISHLMKASFSFFDVNESGRIRKIIDDNASDTHMIVAHLIPDITVAIVTPILLFVIMFSVDVYLGIATVILTILSAIFTKLMYGDIKFMEQYNKALERVNSEAVEYVRGMQVLKIFKASIFSFKSFYDSIVDYSKTAYEYSKSCKQPYVIFQIVLLGAAAFVIPFAIMFSKGTENNVVIMIKLIFFTCFIGTLFSCLMRIMYVGMHQYMATQAVEKLENLFTEMEANDIKFGNNKEFSGYDIEFRNVSFKYDTANILENLSFRLEENKTYALVGSSGGGKSTIAKLISGFYNINEGEILIGGKNISTYSREALMNNISFVFQNSKLFKTTIFENVKIGNENASYEEVMNALKLARCGDILDKFETRENTVIGSKGVHLSGGEIQRIAIARAILKDAKIIILDEASAASDPENEHEIQLAFSNLMNNKTVIMIAHRLSSIRNVDEILVVDNGKIIERGTDKELMEIGGRYKFLQDLFSQANEWRM
>LR134472.1|VEH98153.1|1445490_1446186_+|50S-ribosomal-protein-L1
MKKGKKYLESLKLIDKTNLYDLKEACELAVKTSTAKFDETVELHVKLGVDSRHADQQVRGTVVLPHGTGKTLRVLVLCKENKVQEAKDAGADYVGADDYIQKIQNENWFDFDVIVATPDMMGVVGRIGKILGPKGLMPNPKSGTVTFDIANAVKEIKAGKVEYRVDKANIVHCPVGKVSFGAEKIEENLRTIISAIIKAKPSAAKGKYLKSVSIATTMGPGIKLASTKLGE
>LR134472.1|VEH98151.1|1445018_1445444_+|50S-ribosomal-protein-L11
MAKKVQALVKLQIPAGKATPAPPVGTALGPHGVNIMQFTKEFNAKTADQAGLIIPVVLTVYQDRSFTFITKTPPVPVLIKKKLGIESGSKVPNKTKVGNLTKEQVREIAEVKMPDLNAATIEAAISMVKGTARSMGITVEE
>LR134472.1|VEH98149.1|1444367_1444907_+|Transcription-antitermination-protein-nusG
MTTEELKDIKEKEAKWYVVHTYSGHENKVKANIEKLVVNRGNDIDIFEVVVPTVKEETETGKIKERQLFPGYVLVKMIITDISWYLVRNTRGVTGFVGSGNKPVPLSEKEVEALGVSAKPYDNVDIHEGDSITIIDGAFKDLTAKVIEVSQENGKLKAFVSLFGRDTLAELDFSDVIKN
>LR134472.1|VEH98147.1|1444127_1444334_+|Preprotein-translocase-subunit-SecE
MATKTTDQKQKKTSFMRGVRHEFKKIVWPSKKSVFYYSLAVVTISIISSTMIWGLDNILKRLLGLIIH
>LR134472.1|VEH98167.1|1453304_1454690_+|Bifunctional-protein-GlmU
MNITIILAAGEGTRMKSKKSKVLHKIVNRTLIDYVYDASCDAGSDKTIIIVGKNKIEVEEKFGDKVLYKEQKIGKEYPYGTGYAVQLAVDEIRDDDSVLILSGDTPLIKGETLQKLLEEHIAMNSKATVLTAFINDTTGYGHIIKDNNGKFLKIVEDKDATIEEKRVKEINSGIYVFNGRALKNSITKIDQNNVQNELYLTDAIKVLVQDGEHVSTYKLDDIEEIYGINSKLQLFEAEKIMRYRINSEYMKNGVIMENPENTVIEKGISIGIDTFIGSGARIFGNTSIGENVYITGDSFIENSVIGNDVVIRSSYIEDSTVGDSVTMGPFAHLRPKSILKNEVHIGNFVEVKNSTVGENTKAGHLSYIGDAIVGKDVNMGCGSILVNYDGKNKHISEIGDGCFVGSNSNIVSPVKIANDTFIAAGTTVVSDIENEGSLIIGRSETFEKENWVYKKNLKIKK
>LR134472.1|VEH98169.1|1454706_1455669_+|Ribose-phosphate-pyrophosphokinase
MLAYTGPMKIFSGTANRKFAEDICKCLDMPLGEITIGKFSDGEINLSVEETVRGYDVYIIQPTCNPTNDNLMEVLIMVDAFKRASAGRINVVIPYYGYARQDRKTKAREPITAKLVANLIEKSGADRVITMDLHAGQIQGYFDIPVDHLSAIKPLADFFKDELKDEDKKDMVVVSPDLGGVTRARNFSNYLDLPIAILEKRRPRPNVSEVMNVIGDIEGKTCIIVDDIIDTAGTITNAANALIAKGAKKVYITATHGVFSGKAIENIANSKVEKCVVTDTIPQEKNLGGKIEVVSVAQYFAKAIDRINNNRPVSMLFDGR
>LR134472.1|VEH98171.1|1455658_1456246_+|Peptidyl-tRNA-hydrolase
MEDNTFLIVGLGNPGKNYIGTRHNVGYGVIDILAEKYSINMKKEKFKSFYGQINMFGKKCIFLKPLTYMNLSGEAVIDAVNYFKIKPENIIVVVDDIDIPFGTVRIKKKGSAGTHNGLRSIIYHLETENFPRVKISVGKCPDYMDLKDFVLSKFLPSEEKILKKELEISADAVEEIIKNDVDKTMCKFNGMCIEE
>LR134472.1|VEH98173.1|1456282_1459789_+|Transcription-repair-coupling-factor
MNFLIDFLKNNESYLDMISGLKSNNVPIYCNGLIKESLFHLIYSIFNDLPDKNLVLLVENENRANELCDELKSLVGDKVVVYPNFEIRFHNINSLETNLENIRIEIMNRLLSKEKFIIITTASALSKKISTPKFFKSHYIYIDENLEVNLKELTENLIKMHYDRVDFVEAKGQFSIRGSIFDIFPVNFKNPIRIELFGDDIDSIRIFDINSQRSVEKLNKVEIIPAKEMVLSKSDVENILNGLNKDIEKLQKLKLFGKDIEKSTEKFYQIYNDLKINYHISNMDLISPYIRKGSYSTLLDYLAQDSIICTEDILKIYDKNLEIENLFHENVVFSIENAEILDSHKDILIPFEHILRRIKDFSIINFTQLLKRTKIINPKSIINLKTIEAEIFNRKFDLLFQNLKSKLQRGYKIVIFAGSLEKANNLKEILYAENINSNIFEGLEFELKSSILGISTLNLESGFEYPIQKVLFLTHKEIYGTVKKTSKKTRKKSKENLLDYTDLNVGDFVVHENHGIGEYRGIEQIEVDGIVKDHILILYKGNDKLYIPTDQMNLIQKYIGKDGYKPKLNKLGSNDWIKTKTRAKKVLDEIAIDLVQLYAKRDKIRGFAFSEDTTWQKEFEDSFIYEETYSQLRAINEIKKDMEQFKPMDRLLCGDVGYGKTEVALRAAFKAMMDDKQVAFLVPTTILAQQHYNTAIDRVGNFPVEIEMLSRFRSPAKQKEILKNVKNGKVNLLIGTHKLLSKNLEFKDLGLLIIDEEQRFGVKHKETLKKIKENIDVLSLSATPIPRTMQMSLVGIRDMSILDDPPEERVTIATFVLEYNDSIIREAIYKEIDRGGQVYFVYNRIHDMDKMYVELSRLVPDAKIAMAHSKLSNKELENIMYDFQEGEYDILLCTTIIETGMDIKNCNTMIIYDADKMGLSQLYQLKGRIGRSTRRAYAYFTYEKDKVLTEISEKRLMAIRDFSEFGSGFKIAMRDLELRGAGNILGECQSGHIETIGYEMYVRMLEESIKTVKGENLQIKDQTTIELSVDAYIPSNYIVDNNQKIDMYRKIAAISSRDDFDEIYDELTDRFGNVPTTVLNVMNVSYLKTISTELNFIRIIDREKSVVFKFEQTNRDILQLIGRLSDVLFRKIEFNLNENAELIFNYDKDKLSESIDFVENLLFLKQKN
>LR134472.1|VEH98175.1|1459863_1460850_+|Foldase-protein-prsA-1-precursor
MKNRFIKFASAIALSAMLLTACASAPRGAMVKIGEKYITKDQVQKEYDRVIVSYSDEQKAKYDESTEEGKKASLTLKQNILDMFSNIEVVKQKFAKLEKEYKDEGKSEEEIAKVSVTEQEINDNLAKVKEQLGDKFNEELEKAKLTEDELKYKIEDNLYSTKFQTWFSENYDPTDEEIMEKYKGSDFDGPQINASHILVENEEDAKKVKSRLEAGEKFEDVATEVSKDPSAKKNKGVLGTFTKGVMVKEFYDAAVKLKVGEISDPVKTKFGYHIIKLNEIVEDYDKFSDESKKRIKQNLKKSLLSEKFKTEFEKIQKEVGYLPIKNFK
>LR134472.1|VEH98177.1|1460968_1461247_+|DNA-binding-protein-HU
MNKSELLASMAEKGKITKVDAERALNAFIQTVEETLVKGEKVQLVGFGTFEARERKARSGRNPRNPKEVIKIPASKAPVFKAGKSLKEIVNK
>LR134472.1|VEH98179.1|1461442_1462198_+|Vegetative-protein-209
MSQVILMKNLLEAGVHFGHQTRRWNPKMSKFIFTERNGIYIIDLQKTVKQIEQAYDFVREIVADGGRVLFVGTKKQAQEAVETEAKRSGQFYVSHRWLGGMLTNYKTIRKRIERLKKLELMEEDGTFQRLPKKEVIKLKREAEKLEKFLGGIKEMDKLPDVLFVIDPKNEKIAVNEAKILGIPVIGVVDTNCDPDEVDIAIPGNDDAIRAVKLLTGTIANAIVEAKQGEQVEAEETETVVEIEEVSEEVAE
>LR134472.1|VEH98181.1|1462291_1463362_+|Elongation-factor-Ts
MEITAKLVKDLREATGAGMMECKKALQEVCGDMEKAIEFLREKGLAKAAKKANKVAAEGLITLVLDENNTKAALTEVNSQTDFVAKNENFVALTKKVTEHVFNNEIKNIEELNASNIDGTNFEEFLKLQISSIGENIVVRRLAFAKACCENSIVCGYVHFNKKVGVILKANCDSEATKKGAKDLLQNICMHISAMKPQYLSYKDLDADFVEKEYLALKGSIEKENEELVRLGKQLKRIPKFASMSQITDEVLRAEEELLKEELKKQGKPEKIWDKILPGQIERFIKDNTLIDQQYALFSQQYVLDDNKTVLEAVNDKAKELGGNIEIVEYTRFEVGEGLEKKEENFAEEVAKQMGL
>LR134472.1|VEH98183.1|1463507_1464902_-|Multidrug-export-protein-mepA
MKKERSEMILHGDIYKIIAIISIPIILNNFIQQLYSLADAFWLGKLGTAEFASTSFTWPVIFLFNSIGIGLSIAAISLISQLLGRKDFLHAQKYADTLINISLLFSIVFMLLGYFSADLIVKMMGATGNLAKYSVIYLKYSYLGIPFIFLYYIYSSILSAQGKNTIPTMISTICVILNMILNPIFIFDVIPFTSISGLGLGVKGAALATVLTQGIMCIVGFIHLRINKDIIKLNLHSLVYIKWKKHILKRIYRITLPSVIGQVGTAIGFMIMNSFIQSYGTETVAAYGMVNRISGLLNIPPGGIGSAITSIIGQNIGNNNIKRVKETFKKASIIIIIMSILIAFISFTFRYEILSFFINAPKESELMIQANSYMFYTLITLVMLNMFFVYQGLFQGSGNSKYSMAIDMIRLWVIRIPLILFFKYFTKQGATGIWLAMAISNILVTIIAHLIYLKGKWQQGSFCR
>LR134472.1|VEH98185.1|1465282_1466329_+|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MKKSRILSLMLAGLMLVGCQPKKAEDKNEKKKVETTKNFEGKTLNVVATSEKYKKLFDKFSEETKAKVEFLSMSSGEVIAKLKAEGGKPSADVWFGGGIDAFMKAKLDGLLEMYKPEGFDKIKEGFKDNEGYWISKGVTVVGFLINNKILEEKGLKVPKTWAEIVDSKYKDEIIMANPAVSGTSFANVKGLIDMYGEEKAWEYFKKLNDNVKFYGKRGKDPQEKTVAGEFGIGIIPIDKSAFDVAEKNNLTAIYPEDGLCWVPEGVAIFKNSPNLEVAKAFEDFILRPENQQLIAELDGKDGAQMVIEGTKGYDLGLPKDKFIKEDIKSFGSQRDDILKKWTELTQGK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134472_2	2.17\|1402035\|36\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1402035-1402070	36	LR134472.1	928330-928365	0	1.0

1. spacer 2.17|1402035|36|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to position: 928330-928365, mismatch: 0, identity: 1.0

tccatgtttttctcctttctcttgtcctgatttttt	CRISPR spacer
tccatgtttttctcctttctcttgtcctgatttttt	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134472_2	2.16\|1401974\|31\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401974-1402004	31	MK448986	Streptococcus phage Javan570, complete genome	14033-14063	3	0.903
LR134472_2	2.5\|1401243\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401243-1401277	35	NZ_CP049227	Lactobacillus iners strain C0011D1 plasmid pC0011D1, complete sequence	19124-19158	6	0.829
LR134472_2	2.5\|1401243\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401243-1401277	35	NZ_CP049224	Lactobacillus iners strain C0094A1 plasmid pC0094A1, complete sequence	38109-38143	6	0.829
LR134472_2	2.16\|1401974\|31\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401974-1402004	31	MK448817	Streptococcus phage Javan59, complete genome	20269-20299	6	0.806
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP009060	Borreliella afzelii K78 plasmid cp26, complete sequence	9242-9276	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NC_018983	Borrelia burgdorferi 297 plasmid 297_cp26, complete sequence	9386-9420	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NC_017401	Borreliella burgdorferi N40 plasmid N40_cp26, complete sequence	9386-9420	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NC_017395	Borreliella burgdorferi JD1 plasmid JD1 cp26, complete sequence	9391-9425	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP031398	Borreliella burgdorferi strain MM1 plasmid plsm_cp26, complete sequence	9345-9379	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NC_011724	Borreliella burgdorferi ZS7 plasmid ZS7_cp26, complete sequence	9389-9423	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NC_001903	Borreliella burgdorferi B31 plasmid cp26, complete sequence	9388-9422	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP019755	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp26, complete sequence	9388-9422	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP015797	Borrelia mayonii strain MN14-1539 plasmid cp26, complete sequence	9329-9363	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP017202	Borreliella burgdorferi strain B331 plasmid B331_cp26, complete sequence	9388-9422	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP009213	Borreliella afzelii Tom3107 plasmid cp26, complete sequence	9234-9268	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP015781	Borrelia mayonii strain MN14-1420 plasmid cp26, complete sequence	9329-9363	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NC_019225	Borrelia burgdorferi plasmid cp26, complete sequence	9388-9422	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NC_017229	Borreliella afzelii PKo plasmid cp26, complete sequence	9240-9274	6	0.829
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NC_015907	Borreliella bissettii DN127 plasmid cp26, complete sequence	9390-9424	7	0.8
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP009118	Borreliella valaisiana Tom4006 plasmid cp26, complete sequence	16432-16466	7	0.8
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP014285	Bacillus thuringiensis strain Bt185 plasmid pBT1850055, complete sequence	35813-35847	7	0.8
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP053977	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed1, complete sequence	52307-52341	7	0.8
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP032612	Bacillus thuringiensis strain QZL38 plasmid p.4, complete sequence	25992-26026	7	0.8
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP040346	Bacillus albus strain DLOU-Yingkou plasmid unnamed2, complete sequence	20301-20335	7	0.8
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP009638	Bacillus cereus 03BB108 plasmid pBFI_4, complete sequence	35263-35297	7	0.8
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP009332	Bacillus thuringiensis strain HD1011 plasmid 3, complete sequence	60451-60485	7	0.8
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP053966	Bacillus cereus strain FDAARGOS_802 plasmid unnamed5, complete sequence	60895-60929	7	0.8
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NC_015980	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS2, complete sequence	206-240	7	0.8
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	LK031773	Criblamydia sequanensis plasmid 1, strain CRIB-18, complete sequence	62562-62596	7	0.8
LR134472_3	3.4\|1405130\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405130-1405163	34	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	863607-863640	7	0.794
LR134472_2	2.19\|1402166\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1402166-1402199	34	NC_048173	Erwinia phage Derbicus, complete genome	141414-141447	8	0.765
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP044539	Borrelia sp. CA690 plasmid cp26, complete sequence	6351-6385	8	0.771
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP043858	Arcobacter cibarius strain H743 plasmid pACIB, complete sequence	10725-10759	8	0.771
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP015808	Borrelia mayonii strain MN14-1539 plasmid lp36	21327-21361	8	0.771
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP015793	Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence	21327-21361	8	0.771
LR134472_3	3.3\|1405065\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405065-1405099	35	NZ_CP046125	Enterococcus casseliflavus strain EC291 plasmid unnamed2, complete sequence	15110-15144	8	0.771
LR134472_3	3.4\|1405130\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405130-1405163	34	NZ_CP051433	Escherichia sp. SCLE84 plasmid pSCLE3, complete sequence	26530-26563	8	0.765
LR134472_3	3.4\|1405130\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405130-1405163	34	NZ_CP041094	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence	68593-68626	8	0.765
LR134472_3	3.4\|1405130\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405130-1405163	34	MK649827	Klebsiella pneumoniae strain 1675474 plasmid p1675474_1, complete sequence	163322-163355	8	0.765
LR134472_3	3.4\|1405130\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405130-1405163	34	MK649828	Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence	89188-89221	8	0.765
LR134472_3	3.4\|1405130\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405130-1405163	34	MK649829	Klebsiella pneumoniae strain 16114547 plasmid p16114547_1, complete sequence	67659-67692	8	0.765
LR134472_2	2.2\|1401046\|36\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401046-1401081	36	MH542234	Staphylococcus phage Terranova, complete genome	47302-47337	9	0.75
LR134472_2	2.2\|1401046\|36\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401046-1401081	36	NC_041928	Staphylococcus phage phiIBB-SEP1, complete genome	12038-12073	9	0.75
LR134472_2	2.2\|1401046\|36\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401046-1401081	36	MF417868	Uncultured Caudovirales phage clone 7AX_1, partial genome	135266-135301	9	0.75
LR134472_2	2.2\|1401046\|36\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401046-1401081	36	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	10699-10734	9	0.75
LR134472_2	2.2\|1401046\|36\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401046-1401081	36	MH321490	Staphylococcus phage Quidividi, complete genome	46644-46679	9	0.75
LR134472_2	2.2\|1401046\|36\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401046-1401081	36	MH321491	Staphylococcus phage Twillingate, complete genome	47169-47204	9	0.75
LR134472_2	2.3\|1401112\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401112-1401146	35	NC_029119	Staphylococcus phage SPbeta-like, complete genome	59806-59840	9	0.743
LR134472_2	2.16\|1401974\|31\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401974-1402004	31	NC_047769	Escherichia virus AAPEc6, complete genome	2447-2477	9	0.71
LR134472_2	2.16\|1401974\|31\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401974-1402004	31	MK373773	Escherichia phage vB_EcoP_KAW1A4500, complete genome	3226-3256	9	0.71
LR134472_2	2.16\|1401974\|31\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401974-1402004	31	MK373771	Escherichia phage vB_EcoP_R4596, complete genome	2679-2709	9	0.71
LR134472_2	2.16\|1401974\|31\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401974-1402004	31	NC_047920	Citrobacter phage vB_CroP_CrRp3, complete genome	2679-2709	9	0.71
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP018329	Lactobacillus plantarum subsp. plantarum strain TS12 plasmid pLP12-5, complete sequence	20265-20299	9	0.743
LR134472_3	3.1\|1404934\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1404934-1404968	35	NZ_CP025413	Lactobacillus plantarum strain X7021 plasmid unnamed1, complete sequence	11585-11619	9	0.743
LR134472_2	2.4\|1401177\|36\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1401177-1401212	36	NC_004821	Bacillus prophage phBC6A52, complete genome	4626-4661	10	0.722
LR134472_2	2.17\|1402035\|36\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1402035-1402070	36	MK448727	Streptococcus phage Javan291, complete genome	21487-21522	10	0.722
LR134472_3	3.4\|1405130\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405130-1405163	34	NZ_CP018741	Bacillus cereus strain FORC_047 plasmid pFORC47_1, complete sequence	243342-243375	10	0.706
LR134472_3	3.4\|1405130\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405130-1405163	34	NZ_CP036552	Bacteroides fragilis strain DCMOUH0042B plasmid pBFO42_2, complete sequence	1925-1958	10	0.706
LR134472_3	3.4\|1405130\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405130-1405163	34	NZ_CP036549	Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_3, complete sequence	1804-1837	10	0.706
LR134472_3	3.4\|1405130\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405130-1405163	34	NZ_CP036541	Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_2, complete sequence	5522-5555	10	0.706
LR134472_3	3.4\|1405130\|34\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1405130-1405163	34	NC_011073	Bacteroides fragilis plasmid pBFP35, complete sequence	5255-5288	10	0.706
LR134472_2	2.18\|1402101\|35\|LR134472\|PILER-CR,CRISPRCasFinder,CRT	1402101-1402135	35	MN693831	Marine virus AFVG_250M545, complete genome	12722-12756	11	0.686

1. spacer 2.16|1401974|31|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MK448986 (Streptococcus phage Javan570, complete genome) position: , mismatch: 3, identity: 0.903

ctgatgatatactcatcagcgaaacgttgtt	CRISPR spacer
cagatgatatactcatctgcaaaacgttgtt	Protospacer
* *************** **.**********

2. spacer 2.5|1401243|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049227 (Lactobacillus iners strain C0011D1 plasmid pC0011D1, complete sequence) position: , mismatch: 6, identity: 0.829

tatattttgtcaaaaatattttttggt----tatttttc	CRISPR spacer
tatattttgtcaaagatattatttggtataatatt----	Protospacer
**************.***** ******    ****

3. spacer 2.5|1401243|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049224 (Lactobacillus iners strain C0094A1 plasmid pC0094A1, complete sequence) position: , mismatch: 6, identity: 0.829

tatattttgtcaaaaatattttttggt----tatttttc	CRISPR spacer
tatattttgtcaaagatattatttggtataatatt----	Protospacer
**************.***** ******    ****

4. spacer 2.16|1401974|31|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MK448817 (Streptococcus phage Javan59, complete genome) position: , mismatch: 6, identity: 0.806

ctgatgatatactcatcagcgaaacgttgtt	CRISPR spacer
ctgatgatgtactcatcggcgaatatttttt	Protospacer
********.********.*****   ** **

5. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009060 (Borreliella afzelii K78 plasmid cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtgggtctaaatctatcaataat	Protospacer
    ************************.*****

6. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_018983 (Borrelia burgdorferi 297 plasmid 297_cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaataat	Protospacer
    ************.*****************

7. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_017401 (Borreliella burgdorferi N40 plasmid N40_cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaataat	Protospacer
    ************.*****************

8. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_017395 (Borreliella burgdorferi JD1 plasmid JD1 cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaataat	Protospacer
    ************.*****************

9. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031398 (Borreliella burgdorferi strain MM1 plasmid plsm_cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaataat	Protospacer
    ************.*****************

10. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_011724 (Borreliella burgdorferi ZS7 plasmid ZS7_cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaataat	Protospacer
    ************.*****************

11. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_001903 (Borreliella burgdorferi B31 plasmid cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaataat	Protospacer
    ************.*****************

12. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019755 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaataat	Protospacer
    ************.*****************

13. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015797 (Borrelia mayonii strain MN14-1539 plasmid cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaataat	Protospacer
    ************.*****************

14. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017202 (Borreliella burgdorferi strain B331 plasmid B331_cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaataat	Protospacer
    ************.*****************

15. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009213 (Borreliella afzelii Tom3107 plasmid cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtgggtctaaatctatcaataat	Protospacer
    ************************.*****

16. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015781 (Borrelia mayonii strain MN14-1420 plasmid cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaataat	Protospacer
    ************.*****************

17. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_019225 (Borrelia burgdorferi plasmid cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaataat	Protospacer
    ************.*****************

18. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_017229 (Borreliella afzelii PKo plasmid cp26, complete sequence) position: , mismatch: 6, identity: 0.829

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtgggtctaaatctatcaataat	Protospacer
    ************************.*****

19. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_015907 (Borreliella bissettii DN127 plasmid cp26, complete sequence) position: , mismatch: 7, identity: 0.8

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatctaaatctattaatagt	Protospacer
    ************.****************.

20. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009118 (Borreliella valaisiana Tom4006 plasmid cp26, complete sequence) position: , mismatch: 7, identity: 0.8

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tactacttgcttgtggatccaaatctattaataat	Protospacer
    ************.**.**************

21. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014285 (Bacillus thuringiensis strain Bt185 plasmid pBT1850055, complete sequence) position: , mismatch: 7, identity: 0.8

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tcgcatttgcttgtggatctaaatctactaataaa	Protospacer
 .. *.**********.**********.*******

22. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053977 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tcgcatttgcttgtggatctaaatctactaataaa	Protospacer
 .. *.**********.**********.*******

23. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032612 (Bacillus thuringiensis strain QZL38 plasmid p.4, complete sequence) position: , mismatch: 7, identity: 0.8

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tcgcatttgcttgtggatctaaatctactaataaa	Protospacer
 .. *.**********.**********.*******

24. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040346 (Bacillus albus strain DLOU-Yingkou plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.8

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tcgcatttgcttgtggatctaaatctactaataaa	Protospacer
 .. *.**********.**********.*******

25. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009638 (Bacillus cereus 03BB108 plasmid pBFI_4, complete sequence) position: , mismatch: 7, identity: 0.8

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tcgcatttgcttgtggatctaaatctactaataaa	Protospacer
 .. *.**********.**********.*******

26. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009332 (Bacillus thuringiensis strain HD1011 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.8

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tcgcatttgcttgtggatctaaatctactaataaa	Protospacer
 .. *.**********.**********.*******

27. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053966 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.8

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tcgcatttgcttgtggatctaaatctactaataaa	Protospacer
 .. *.**********.**********.*******

28. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_015980 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS2, complete sequence) position: , mismatch: 7, identity: 0.8

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
ttgcattagcttgtggatctaaatcaattaataaa	Protospacer
 *. *.* ********.******** *********

29. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to LK031773 (Criblamydia sequanensis plasmid 1, strain CRIB-18, complete sequence) position: , mismatch: 7, identity: 0.8

ataaacttg-cttgtgggtctaaatctattaataaa	CRISPR spacer
-tggagttgccttgtgggtctaagtctatcaataag	Protospacer
 *..* *** *************.*****.*****.

30. spacer 3.4|1405130|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

--taaagtcgctaaaatttatcttatttttgcattt	CRISPR spacer
cgttaag--gcgaaaatatatcttatttttgcagta	Protospacer
  * ***  ** ***** *************** *

31. spacer 2.19|1402166|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_048173 (Erwinia phage Derbicus, complete genome) position: , mismatch: 8, identity: 0.765

tacacaagaatttttttgccttttgctgt-gtatc	CRISPR spacer
cgaacacgaattttattgccttttgctgcagcat-	Protospacer
.. *** ******* *************. *.**

32. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044539 (Borrelia sp. CA690 plasmid cp26, complete sequence) position: , mismatch: 8, identity: 0.771

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tgctgcttgcttgtggatctaaatctattagtaat	Protospacer
    .***********.*************.***

33. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043858 (Arcobacter cibarius strain H743 plasmid pACIB, complete sequence) position: , mismatch: 8, identity: 0.771

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
aaagagttgcttgaggatctaaatctattaatgct	Protospacer
* *.* ******* **.***************.

34. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015808 (Borrelia mayonii strain MN14-1539 plasmid lp36) position: , mismatch: 8, identity: 0.771

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
ttaaagaattttgtggatctaaatcaattaataaa	Protospacer
 ****    .******.******** *********

35. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015793 (Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence) position: , mismatch: 8, identity: 0.771

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
ttaaagaattttgtggatctaaatcaattaataaa	Protospacer
 ****    .******.******** *********

36. spacer 3.3|1405065|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046125 (Enterococcus casseliflavus strain EC291 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

tttttctattgctctactttttaaaatttcttttg	CRISPR spacer
tttttctattgccctattttttaaacagccttgtc	Protospacer
************.***.********   .*** *

37. spacer 3.4|1405130|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051433 (Escherichia sp. SCLE84 plasmid pSCLE3, complete sequence) position: , mismatch: 8, identity: 0.765

taaagtcgctaaaatttatcttatttttgcattt	CRISPR spacer
tagaagggtaaaaatttatcttatttttctattt	Protospacer
**.*.  *. ****************** .****

38. spacer 3.4|1405130|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041094 (Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

taaagtcgctaaaatttatcttatttttgcattt	CRISPR spacer
tagaagggtaaaaatttatcttatttttctattt	Protospacer
**.*.  *. ****************** .****

39. spacer 3.4|1405130|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MK649827 (Klebsiella pneumoniae strain 1675474 plasmid p1675474_1, complete sequence) position: , mismatch: 8, identity: 0.765

taaagtcgctaaaatttatcttatttttgcattt	CRISPR spacer
tagaagggtaaaaatttatcttatttttctattt	Protospacer
**.*.  *. ****************** .****

40. spacer 3.4|1405130|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MK649828 (Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence) position: , mismatch: 8, identity: 0.765

taaagtcgctaaaatttatcttatttttgcattt	CRISPR spacer
tagaagggtaaaaatttatcttatttttctattt	Protospacer
**.*.  *. ****************** .****

41. spacer 3.4|1405130|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MK649829 (Klebsiella pneumoniae strain 16114547 plasmid p16114547_1, complete sequence) position: , mismatch: 8, identity: 0.765

taaagtcgctaaaatttatcttatttttgcattt	CRISPR spacer
tagaagggtaaaaatttatcttatttttctattt	Protospacer
**.*.  *. ****************** .****

42. spacer 2.2|1401046|36|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MH542234 (Staphylococcus phage Terranova, complete genome) position: , mismatch: 9, identity: 0.75

tatttagctaatgatttaattgctactcctgcaaag	CRISPR spacer
tctatttctaatgatttatttgctattcctgcacca	Protospacer
* * *  *********** ******.*******  .

43. spacer 2.2|1401046|36|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_041928 (Staphylococcus phage phiIBB-SEP1, complete genome) position: , mismatch: 9, identity: 0.75

tatttagctaatgatttaattgctactcctgcaaag	CRISPR spacer
tctatttctaatgatttatttgctattcctgcacca	Protospacer
* * *  *********** ******.*******  .

44. spacer 2.2|1401046|36|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MF417868 (Uncultured Caudovirales phage clone 7AX_1, partial genome) position: , mismatch: 9, identity: 0.75

tatttagctaatgatttaattgctactcctgcaaag	CRISPR spacer
tctatttctaatgatttatttgctattcctgcacca	Protospacer
* * *  *********** ******.*******  .

45. spacer 2.2|1401046|36|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 9, identity: 0.75

tatttagctaatgatttaattgctactcctgcaaag	CRISPR spacer
tctatttctaatgatttatttgctattcctgcacct	Protospacer
* * *  *********** ******.*******

46. spacer 2.2|1401046|36|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MH321490 (Staphylococcus phage Quidividi, complete genome) position: , mismatch: 9, identity: 0.75

tatttagctaatgatttaattgctactcctgcaaag	CRISPR spacer
tctatttctaatgatttatttgctattcctgcacca	Protospacer
* * *  *********** ******.*******  .

47. spacer 2.2|1401046|36|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MH321491 (Staphylococcus phage Twillingate, complete genome) position: , mismatch: 9, identity: 0.75

tatttagctaatgatttaattgctactcctgcaaag	CRISPR spacer
tctatttctaatgatttatttgctattcctgcacca	Protospacer
* * *  *********** ******.*******  .

48. spacer 2.3|1401112|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_029119 (Staphylococcus phage SPbeta-like, complete genome) position: , mismatch: 9, identity: 0.743

gttctgcaacttttttactttctacagctttttca------	CRISPR spacer
attcttcaacttttttacttgctaca------tcagaagag	Protospacer
.**** ************** *****      ***

49. spacer 2.16|1401974|31|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_047769 (Escherichia virus AAPEc6, complete genome) position: , mismatch: 9, identity: 0.71

ctgatgatatactcatcagcgaaacgttgtt	CRISPR spacer
atgattatattctcatcagcgaaaggaacga	Protospacer
 **** **** ************* *

50. spacer 2.16|1401974|31|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MK373773 (Escherichia phage vB_EcoP_KAW1A4500, complete genome) position: , mismatch: 9, identity: 0.71

ctgatgatatactcatcagcgaaacgttgtt	CRISPR spacer
atgatgatactctcatcagcgaaaggaacaa	Protospacer
 ********. ************* *

51. spacer 2.16|1401974|31|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MK373771 (Escherichia phage vB_EcoP_R4596, complete genome) position: , mismatch: 9, identity: 0.71

ctgatgatatactcatcagcgaaacgttgtt	CRISPR spacer
atgatgatattttcatcagcgaaaggaacaa	Protospacer
 ********* .************ *

52. spacer 2.16|1401974|31|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_047920 (Citrobacter phage vB_CroP_CrRp3, complete genome) position: , mismatch: 9, identity: 0.71

ctgatgatatactcatcagcgaaacgttgtt	CRISPR spacer
atgatgatattttcatcagcgaaaggaacaa	Protospacer
 ********* .************ *

53. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018329 (Lactobacillus plantarum subsp. plantarum strain TS12 plasmid pLP12-5, complete sequence) position: , mismatch: 9, identity: 0.743

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tagcattaccttgtgggtctaaatctactagtaaa	Protospacer
  . *.*  ******************.**.****

54. spacer 3.1|1404934|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025413 (Lactobacillus plantarum strain X7021 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

ataaacttgcttgtgggtctaaatctattaataaa	CRISPR spacer
tagcattaccttgtgggtctaaatctactagtaaa	Protospacer
  . *.*  ******************.**.****

55. spacer 2.4|1401177|36|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_004821 (Bacillus prophage phBC6A52, complete genome) position: , mismatch: 10, identity: 0.722

ttttctattgatattttattattattgattaattcg	CRISPR spacer
aattctattaatattttactattattgaacattgga	Protospacer
  *******.********.********* .* *  .

56. spacer 2.17|1402035|36|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MK448727 (Streptococcus phage Javan291, complete genome) position: , mismatch: 10, identity: 0.722

tccatgtttttctcctttctcttgtcctgatttttt	CRISPR spacer
tccatgtttttctcctttctcctttcgttgcctcaa	Protospacer
*********************.* ** * ...*.

57. spacer 3.4|1405130|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018741 (Bacillus cereus strain FORC_047 plasmid pFORC47_1, complete sequence) position: , mismatch: 10, identity: 0.706

taaagtcgctaaaatttatcttatttttgcattt	CRISPR spacer
agacaagcctaaattttatcttattttttcatta	Protospacer
 .* .   ***** ************** ****

58. spacer 3.4|1405130|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036552 (Bacteroides fragilis strain DCMOUH0042B plasmid pBFO42_2, complete sequence) position: , mismatch: 10, identity: 0.706

taaagtcgctaaaatttatcttatttttgcattt	CRISPR spacer
ccaaaaatataaaatttctcctatttttgcattg	Protospacer
. **.    ******** **.************

59. spacer 3.4|1405130|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036549 (Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_3, complete sequence) position: , mismatch: 10, identity: 0.706

taaagtcgctaaaatttatcttatttttgcattt	CRISPR spacer
ccaaaaatataaaatttctcctatttttgcattg	Protospacer
. **.    ******** **.************

60. spacer 3.4|1405130|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036541 (Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_2, complete sequence) position: , mismatch: 10, identity: 0.706

taaagtcgctaaaatttatcttatttttgcattt	CRISPR spacer
ccaaaaatataaaatttctcctatttttgcattg	Protospacer
. **.    ******** **.************

61. spacer 3.4|1405130|34|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to NC_011073 (Bacteroides fragilis plasmid pBFP35, complete sequence) position: , mismatch: 10, identity: 0.706

taaagtcgctaaaatttatcttatttttgcattt	CRISPR spacer
ccaaaaatataaaatttctcctatttttgcattg	Protospacer
. **.    ******** **.************

62. spacer 2.18|1402101|35|LR134472|PILER-CR,CRISPRCasFinder,CRT matches to MN693831 (Marine virus AFVG_250M545, complete genome) position: , mismatch: 11, identity: 0.686

tttaataagtcttgataaaattttaatctttcaag	CRISPR spacer
tcatgcttcgcttgatcaaattttaatctatcaag	Protospacer
*.  ..    ****** ************ *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

28935 : 43492

Synechococcus_phage(22.22%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH94377.1\|28935_29388_-	Helix-destabilizing protein	H9A0L6	Staphylococcus_phage	4.9e-21	42.2
VEH94379.1\|29400_29685_-	BS9	NA	NA	NA	NA
VEH94381.1\|29818_31060_-	Phosphoribosylamine--glycine ligase	NA	NA	NA	NA
VEH94383.1\|31069_32599_-	Bifunctional purine biosynthesis protein PurH	Q58MG4	Prochlorococcus_phage	1.1e-64	46.3
VEH94385.1\|32600_33224_-	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.3e-19	31.8
VEH94387.1\|33242_34688_-	Amidophosphoribosyltransferase precursor	A0A0M3SGR2	Mollivirus	4.8e-46	32.1
VEH94389.1\|34674_35382_-	Phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A1D7SPE1	Cyanophage	7.1e-43	42.6
VEH94391.1\|35383_39052_-	Phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.6e-29	29.0
VEH94393.1\|39069_40095_-	Phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	1.4e-63	40.6
VEH94396.1\|40110_40590_-	N5-carboxyaminoimidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.8e-24	51.2
VEH94398.1\|40647_41325_-	Phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	NA	NA	NA
VEH94400.1\|41731_43492_+	Glycerophosphoryl diester phosphodiesterase	A0A1C9C589	Heterosigma_akashiwo_virus	2.4e-07	25.5

DBSCAN-SWA_2

320351 : 361157

Streptococcus_phage(25.0%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH95289.1\|320351_321428_-\|tRNA	tRNA-specific 2-thiouridylase mnmA	NA	NA	NA	NA
VEH95291.1\|321438_322269_-	DegV domain-containing protein SAV1425	A0A1X9I5J4	Streptococcus_phage	5.3e-29	30.8
VEH95295.1\|322270_323605_-	Phosphoglucosamine mutase	A0A127AWJ1	Bacillus_phage	5.3e-23	25.3
VEH95299.1\|323771_325043_-	Arabinose efflux permease	NA	NA	NA	NA
VEH95303.1\|325232_325817_-	Uncharacterized methyltransferase ycgJ	NA	NA	NA	NA
VEH95307.1\|325998_326199_+	hybrid cluster protein-associated redox disulfide domain	NA	NA	NA	NA
VEH95311.1\|326302_327718_-	Cytosol non-specific dipeptidase	NA	NA	NA	NA
VEH95315.1\|327727_327994_-	Glutaredoxin-related protein	NA	NA	NA	NA
VEH95319.1\|328003_329395_-\|tRNA	Glycine--tRNA ligase	A0A2I2L3K8	Orpheovirus	5.0e-48	31.4
VEH95323.1\|329634_331983_-	L,D-transpeptidase catalytic domain	NA	NA	NA	NA
VEH95325.1\|332172_333072_-	Uncharacterized BCR, YitT family COG1284	NA	NA	NA	NA
VEH95329.1\|333288_333822_+	Uncharacterised protein	NA	NA	NA	NA
VEH95334.1\|334157_335495_+	Aminopeptidase C	R4TV59	Phaeocystis_globosa_virus	2.2e-85	40.2
VEH95338.1\|335624_335921_-\|tRNA	tRNA (guanosine(18)-2'-O)-methyltransferase	NA	NA	NA	NA
VEH95342.1\|336227_336959_-	Uncharacterised protein	NA	NA	NA	NA
VEH95345.1\|336973_338086_-\|protease	Predicted Zn-dependent proteases and their inactivated homologs	NA	NA	NA	NA
VEH95349.1\|338091_338874_-	inner membrane transport permease	NA	NA	NA	NA
VEH95353.1\|338884_339820_-	Doxorubicin resistance ATP-binding protein DrrA	W6JKT0	Anomala_cuprea_entomopoxvirus	2.3e-20	29.0
VEH95355.1\|339846_341289_-	Molybdenum cofactor biosynthesis protein A	NA	NA	NA	NA
VEH95359.1\|341470_341641_+	Uncharacterised protein	NA	NA	NA	NA
VEH95363.1\|342006_342621_+	Transposase DDE domain	A0A1X9I5T2	Streptococcus_phage	2.1e-51	59.8
VEH95367.1\|342730_343516_-\|tRNA	tRNA (guanosine(18)-2'-O)-methyltransferase	NA	NA	NA	NA
VEH95372.1\|343490_344132_-	Ktr system potassium uptake protein A	NA	NA	NA	NA
VEH95376.1\|344140_345490_-	Ktr system potassium uptake protein B	NA	NA	NA	NA
VEH95380.1\|345536_345881_-	50S ribosomal protein L20	NA	NA	NA	NA
VEH95384.1\|345899_346091_-	50S ribosomal protein L35	NA	NA	NA	NA
VEH95388.1\|346106_346511_-	Translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.8e-12	37.7
VEH95392.1\|346801_347719_-	Tellurite resistance protein tehA homolog	NA	NA	NA	NA
VEH95396.1\|347785_348586_-	Uncharacterised ArCR, COG2043	NA	NA	NA	NA
VEH95400.1\|348903_350997_-	30S ribosomal protein S1	NA	NA	NA	NA
VEH95404.1\|351053_352454_-	Dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-40	29.4
VEH95410.1\|352586_352820_-	Uncharacterised protein	NA	NA	NA	NA
VEH95414.1\|352996_354541_+	carbohydrate diacid transcriptional activator CdaR	NA	NA	NA	NA
VEH95419.1\|354666_355389_+	Uncharacterised protein	NA	NA	NA	NA
VEH95423.1\|355390_356047_+	Uncharacterised protein	NA	NA	NA	NA
VEH95427.1\|356080_357259_+	Uncharacterized hydrolase YxeP	NA	NA	NA	NA
VEH95431.1\|357318_358026_-\|protease	CAAX amino terminal protease self- immunity	NA	NA	NA	NA
VEH95435.1\|358077_358794_-\|protease	exosortase E/protease, VPEID-CTERM system	NA	NA	NA	NA
VEH95438.1\|358860_359583_-\|protease	exosortase E/protease, VPEID-CTERM system	NA	NA	NA	NA
VEH95442.1\|359645_360368_-\|protease	CAAX amino terminal protease self- immunity	NA	NA	NA	NA
VEH95446.1\|360431_361157_-\|protease	exosortase E/protease, VPEID-CTERM system	NA	NA	NA	NA

DBSCAN-SWA_3

886747 : 927620

Clostridium_phage(13.33%)

terminase,protease,head,portal,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEH96778.1\|886747_888364_+\|protease	Serine protease Do-like HtrA	A0A1B1IRH0	uncultured_Mediterranean_phage	1.3e-15	35.2
VEH96781.1\|888474_888867_-	Uncharacterised protein	NA	NA	NA	NA
VEH96784.1\|888863_888962_-	Uncharacterised protein	NA	NA	NA	NA
VEH96787.1\|889313_891056_+	DEAD-box ATP-dependent RNA helicase CshA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.2e-68	38.5
VEH96790.1\|891071_891776_+	23S rRNA methyltransferase	NA	NA	NA	NA
VEH96793.1\|893169_893388_-	Domain of uncharacterised function (DUF1858)	NA	NA	NA	NA
VEH96796.1\|893904_894831_+	Uncharacterised protein	NA	NA	NA	NA
VEH96800.1\|894769_894985_+	Uncharacterised protein	NA	NA	NA	NA
VEH96803.1\|895129_895732_-	DUF218 domain	NA	NA	NA	NA
VEH96807.1\|895741_896227_-	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA
VEH96810.1\|896333_896705_-	Uncharacterised protein	NA	NA	NA	NA
VEH96813.1\|896979_897921_-	Proline iminopeptidase	NA	NA	NA	NA
VEH96816.1\|898040_898280_+	PQ loop repeat	NA	NA	NA	NA
VEH96819.1\|898346_898730_+	Uncharacterised protein	F0PIL2	Enterococcus_phage	3.6e-33	53.6
VEH96822.1\|898930_899971_-	Tyrosine recombinase XerD	H7BVF7	unidentified_phage	1.3e-56	37.2
VEH96825.1\|900004_900451_-	TM2 domain	F6K8R9	Clostridium_phage	2.0e-11	50.0
VEH96829.1\|900460_900922_-	Uncharacterised protein	A0A059T7S0	Listeria_phage	2.8e-08	32.0
VEH96832.1\|901106_901886_-	PemK-like protein	J7KDP1	Streptococcus_phage	1.0e-10	29.2
VEH96835.1\|901890_902253_-	bifunctional HTH-domain containing protein/aminotransferase	A0A2H4J6F9	uncultured_Caudovirales_phage	9.0e-10	38.7
VEH96838.1\|902405_902624_+	Uncharacterised protein	A5GYQ4	Lactococcus_phage	3.6e-06	37.3
VEH96841.1\|902656_902860_+	Uncharacterised protein	NA	NA	NA	NA
VEH96844.1\|902852_903233_-	Uncharacterised protein	A0A1P8L6H1	Staphylococcus_phage	5.4e-13	34.7
VEH96847.1\|903303_903513_+	Uncharacterised protein	NA	NA	NA	NA
VEH96850.1\|903502_903688_+	Uncharacterised protein	NA	NA	NA	NA
VEH96853.1\|903889_904276_+	Uncharacterised protein	NA	NA	NA	NA
VEH96857.1\|904275_904554_+	Uncharacterised protein	NA	NA	NA	NA
VEH96860.1\|904537_904798_+	Uncharacterised protein	NA	NA	NA	NA
VEH96863.1\|904826_905246_+	Helix-destabilizing protein	S5MNH0	Brevibacillus_phage	1.2e-13	35.4
VEH96866.1\|905254_906133_+	Type I restriction-modification system methyltransferase subunit	A0A0M3LQ47	Mannheimia_phage	8.5e-62	48.2
VEH96869.1\|906143_906458_+	Uncharacterised protein	NA	NA	NA	NA
VEH96872.1\|906474_906885_+	Uncharacterised protein	NA	NA	NA	NA
VEH96876.1\|907114_907957_+	Uncharacterised protein	H7BUL9	unidentified_phage	1.7e-22	30.2
VEH96880.1\|907953_908736_+	Modification methylase DpnIIA	Q24LC8	Clostridium_phage	1.6e-51	39.8
VEH96883.1\|908741_908933_+	Uncharacterised protein	NA	NA	NA	NA
VEH96886.1\|908929_909427_+	Holliday junction resolvase recU	A0A2K9V2V4	Faecalibacterium_phage	1.7e-19	34.6
VEH96889.1\|909472_909634_+	Uncharacterised protein	NA	NA	NA	NA
VEH96892.1\|909703_910147_+	Uncharacterised protein	NA	NA	NA	NA
VEH96895.1\|910324_910636_+	Uncharacterised protein	A0A1B0YEC6	Lactobacillus_phage	1.8e-11	39.6
VEH96898.1\|910754_911111_+	Uncharacterised protein	A0A290GJQ7	Caldibacillus_phage	1.3e-16	44.0
VEH96901.1\|911107_912787_+\|terminase	Phage terminase-like protein, large subunit	A0A1B0Y6B8	Lactobacillus_phage	3.0e-156	49.4
VEH96904.1\|912799_913996_+\|portal	phage portal protein, HK97 family	NA	NA	NA	NA
VEH96907.1\|913985_915005_+\|head,protease	phage prohead protease, HK97 family	A0A1Q1PVX3	Staphylococcus_phage	1.1e-12	31.0
VEH96911.1\|915013_916138_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	R9TQG7	Paenibacillus_phage	2.5e-26	26.4
VEH96914.1\|916161_916488_+	Uncharacterised protein	NA	NA	NA	NA
VEH96917.1\|916497_916761_+	Uncharacterised protein	A0A1L2BY95	Clostridium_phage	5.5e-09	41.4
VEH96920.1\|916760_917057_+	Uncharacterised protein	NA	NA	NA	NA
VEH96923.1\|917058_917532_+	Uncharacterised protein	A0A0U4J8M6	Bacillus_phage	6.9e-18	37.3
VEH96926.1\|917524_917890_+	Uncharacterised protein	A0A0U4IB84	Bacillus_phage	1.5e-07	28.3
VEH96929.1\|917889_918489_+	Uncharacterised protein	A0A0U4IS63	Bacillus_phage	5.3e-55	56.0
VEH96932.1\|918499_918829_+	Uncharacterised protein	NA	NA	NA	NA
VEH96935.1\|918837_919095_+	Uncharacterised protein	NA	NA	NA	NA
VEH96938.1\|919129_921097_+\|tail	Phage-related minor tail protein	A0A1S5SCN8	Streptococcus_phage	8.1e-20	62.2
VEH96941.1\|921100_921730_+	Phage-related protein	I1TJW6	Clostridium_phage	5.6e-07	27.1
VEH96944.1\|921729_923319_+	Uncharacterised protein	H7BV46	unidentified_phage	1.9e-51	34.4
VEH96947.1\|923318_925070_+	Uncharacterised protein	A0A286QRZ8	Streptococcus_phage	2.5e-12	29.2
VEH96950.1\|925080_925704_+	Uncharacterised protein	NA	NA	NA	NA
VEH96953.1\|925818_926124_+	Uncharacterised protein	NA	NA	NA	NA
VEH96956.1\|926146_926413_+	Small integral membrane protein	J7KDR1	Streptococcus_phage	4.6e-19	51.9
VEH96959.1\|926459_926669_+	Uncharacterised protein	NA	NA	NA	NA
VEH96962.1\|926681_927620_+	N-acetylmuramoyl-L-alanine amidase CwlH precursor	A0A1L2JY70	Aeribacillus_phage	5.4e-38	49.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134472

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection