CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134442	Propionibacterium australiense strain NCTC13651 genome assembly, chromosome: 1	12 crisprs	DEDDh,csb2gr5,cas1,cas2,csm3gr7,cas10,cas3,WYL,csa3,DinG,csb1gr7,cas8u1,PD-DExK,csx10gr5	0	20	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134442_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_2

297138-298546

TypeIII

Consensus_repeat	Method
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	PILER-CR
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CRISPRCasFinder
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CRT

19 spacers

cas2,cas1,csb2gr5,csm3gr7,cas10

The CRISPR arrays of LR134442_2

>merge|LR134442|2|297138-298546|PILER-CR,CRISPRCasFinder,CRT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACGATTTCAATGGGAATGAATCAGCGGTTTTCGTACAGATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACTCGACTCTTGGACGACATCTCCCGCCTCCGCTTGTCATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACTCGGAGCCGGTGCGCCACTCGCGCGGCACGACAAATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACTTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTGATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACTTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTGATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACCCGATTATTTTCAACTGTTTCGTCCTCGGGATGGTCTATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACTCCAGGGCCGGCCGAGGGAGCAGGGGGTGTAACGGCATTTCCCCATCTATTCAGATAGGGCTCCATTGAGACCGAACGGGCCCGTAGGCAGCCCCAGCTGAGAGCAGTAATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACTCCACCTACCAAGAACCCGACGAGCGCTGCAGCCGCATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACGTCAGCATGTTGTGACTGATCATCGCAGTGACCTGCACATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACCATAATCGCCCTTTGCTGCCCACTGGGCATATTCGCGGATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACCCGAGTATCCTCTTCTGCTGAGGGCAACTGGTGCACCATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACATCTGGAGGCCGGTCGAGGTCCAGGCCCTGCACCTGATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACAAGAAGCGCGCCGCGTCCATAACCGCGACAACCGCCATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACAACAGGCGGATCAACGCCTTGCCCTCGTCAATCTTATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACAACAGGCGGATCAACGCCTTGCCCTCGTCAATCTTATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACAAGAGGCGGATCAACGCCTTGCCCTCGTCATTCTTATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACCCGTGTTCATCCCGACAACCTGCTTGACACCGGGGGATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACCCGTGTTCATCCCGACAACCTGCTTGACACCGGGGGATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACC

>LR134442|2|1|297138-298545|PILER-CR
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	GATTTCAATGGGAATGAATCAGCGGTTTTCGTACAG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCGACTCTTGGACGACATCTCCCGCCTCCGCTTGTC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCGGAGCCGGTGCGCCACTCGCGCGGCACGACAA
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGATTATTTTCAACTGTTTCGTCCTCGGGATGGTCT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCCAGGGCCGGCCGAGGGAGCAGGGGGTGTAACGGC
ATTTCCCCATCTATTCAGATAGGGCTCCATTGAGAC	CGAACGGGCCCGTAGGCAGCCCCAGCTGAGAGCAGTA
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCCACCTACCAAGAACCCGACGAGCGCTGCAGCCGC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	GTCAGCATGTTGTGACTGATCATCGCAGTGACCTGCAC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CATAATCGCCCTTTGCTGCCCACTGGGCATATTCGCGG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGAGTATCCTCTTCTGCTGAGGGCAACTGGTGCACC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	ATCTGGAGGCCGGTCGAGGTCCAGGCCCTGCACCTG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AAGAAGCGCGCCGCGTCCATAACCGCGACAACCGCC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AACAGGCGGATCAACGCCTTGCCCTCGTCAATCTT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AACAGGCGGATCAACGCCTTGCCCTCGTCAATCTT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AAGAGGCGGATCAACGCCTTGCCCTCGTCATTCTT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGTGTTCATCCCGACAACCTGCTTGACACCGGGGG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGTGTTCATCCCGACAACCTGCTTGACACCGGGGG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC

>LR134442|2|2|297138-298546|CRISPRCasFinder
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	GATTTCAATGGGAATGAATCAGCGGTTTTCGTACAG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCGACTCTTGGACGACATCTCCCGCCTCCGCTTGTC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCGGAGCCGGTGCGCCACTCGCGCGGCACGACAA
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGATTATTTTCAACTGTTTCGTCCTCGGGATGGTCT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCCAGGGCCGGCCGAGGGAGCAGGGGGTGTAACGGC
ATTTCCCCATCTATTCAGATAGGGCTCCATTGAGAC	CGAACGGGCCCGTAGGCAGCCCCAGCTGAGAGCAGTA
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCCACCTACCAAGAACCCGACGAGCGCTGCAGCCGC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	GTCAGCATGTTGTGACTGATCATCGCAGTGACCTGCAC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CATAATCGCCCTTTGCTGCCCACTGGGCATATTCGCGG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGAGTATCCTCTTCTGCTGAGGGCAACTGGTGCACC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	ATCTGGAGGCCGGTCGAGGTCCAGGCCCTGCACCTG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AAGAAGCGCGCCGCGTCCATAACCGCGACAACCGCC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AACAGGCGGATCAACGCCTTGCCCTCGTCAATCTT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AACAGGCGGATCAACGCCTTGCCCTCGTCAATCTT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AAGAGGCGGATCAACGCCTTGCCCTCGTCATTCTT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGTGTTCATCCCGACAACCTGCTTGACACCGGGGG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGTGTTCATCCCGACAACCTGCTTGACACCGGGGG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACC

>LR134442|2|1|297138-298545|CRT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	GATTTCAATGGGAATGAATCAGCGGTTTTCGTACAG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCGACTCTTGGACGACATCTCCCGCCTCCGCTTGTC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCGGAGCCGGTGCGCCACTCGCGCGGCACGACAA
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGATTATTTTCAACTGTTTCGTCCTCGGGATGGTCT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCCAGGGCCGGCCGAGGGAGCAGGGGGTGTAACGGC
ATTTCCCCATCTATTCAGATAGGGCTCCATTGAGAC	CGAACGGGCCCGTAGGCAGCCCCAGCTGAGAGCAGTA
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TCCACCTACCAAGAACCCGACGAGCGCTGCAGCCGC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	GTCAGCATGTTGTGACTGATCATCGCAGTGACCTGCAC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CATAATCGCCCTTTGCTGCCCACTGGGCATATTCGCGG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGAGTATCCTCTTCTGCTGAGGGCAACTGGTGCACC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	ATCTGGAGGCCGGTCGAGGTCCAGGCCCTGCACCTG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AAGAAGCGCGCCGCGTCCATAACCGCGACAACCGCC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AACAGGCGGATCAACGCCTTGCCCTCGTCAATCTT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AACAGGCGGATCAACGCCTTGCCCTCGTCAATCTT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	AAGAGGCGGATCAACGCCTTGCCCTCGTCATTCTT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGTGTTCATCCCGACAACCTGCTTGACACCGGGGG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CCGTGTTCATCCCGACAACCTGCTTGACACCGGGGG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH88959.1\|288051_289377_+\|Bacillibactin-exporter	unknown	unknown	gnl\|CDD\|340888
LR134442.1\|VEH88958.1\|286178_287882_-\|Iron-import-ATP-binding/permease-protein-IrtA	unknown	unknown	gnl\|CDD\|224055
LR134442.1\|VEH88961.1\|290375_291029_+\|Galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
LR134442.1\|VEH88970.1\|304419_305487_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|315923
LR134442.1\|VEH88957.1\|284478_286182_-\|Iron-import-ATP-binding/permease-protein-IrtB	unknown	unknown	gnl\|CDD\|224055
LR134442.1\|VEH88972.1\|306408_306930_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH88960.1\|289448_290243_+\|Uncharacterized-isomerase-yddE	unknown	unknown	gnl\|CDD\|223461
LR134442.1\|VEH88969.1\|303072_303654_-\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
LR134442.1\|VEH88956.1\|282226_284458_+\|Arginine-transport-ATP-binding-protein-ArtP	unknown	unknown	gnl\|CDD\|224048
LR134442.1\|VEH88967.1\|299765_301325_-\|Transposase	unknown	unknown	gnl\|CDD\|227708
LR134442.1\|VEH88968.1\|301874_302969_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|225949
LR134442.1\|VEH88974.1\|308542_310504_-\|Uncharacterised-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187857
LR134442.1\|VEH88963.1\|294226_295027_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
LR134442.1\|VEH88973.1\|306926_308546_-\|CRISPR-associated-RAMP-protein,-SSO1426-family	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
LR134442.1\|VEH88975.1\|310500_312261_-\|Uncharacterised-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|187811
LR134442.1\|VEH88962.1\|291164_293993_+\|Calcium-transporting-ATPase	unknown	unknown	gnl\|CDD\|319781
LR134442.1\|VEH88964.1\|295259_296675_+\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LR134442.1\|VEH88971.1\|305522_306407_-\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
LR134442.1\|VEH88966.1\|298974_299520_+\|Transposase-DDE-domain	unknown	unknown	gnl\|CDD\|372577
LR134442.1\|VEH88965.1\|296680_296965_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH88959.1\|288051_289377_+\|Bacillibactin-exporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.60622e-26
LR134442.1\|VEH88958.1\|286178_287882_-\|Iron-import-ATP-binding/permease-protein-IrtA	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.64664e-88
LR134442.1\|VEH88961.1\|290375_291029_+\|Galactoside-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	1.52491e-59
LR134442.1\|VEH88970.1\|304419_305487_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.43608e-24
LR134442.1\|VEH88957.1\|284478_286182_-\|Iron-import-ATP-binding/permease-protein-IrtB	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.97259e-111
LR134442.1\|VEH88975.1\|310500_312261_-\|Uncharacterised-protein	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0.00133485
LR134442.1\|VEH88960.1\|289448_290243_+\|Uncharacterized-isomerase-yddE	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	7.04187e-65
LR134442.1\|VEH88969.1\|303072_303654_-\|CRISPR-associated-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	2.11652e-11
LR134442.1\|VEH88956.1\|282226_284458_+\|Arginine-transport-ATP-binding-protein-ArtP	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	9.21752e-69
LR134442.1\|VEH88967.1\|299765_301325_-\|Transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	1.01477e-11
LR134442.1\|VEH88968.1\|301874_302969_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.42747e-06
LR134442.1\|VEH88974.1\|308542_310504_-\|Uncharacterised-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	9.32293e-09
LR134442.1\|VEH88963.1\|294226_295027_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.97601e-06
LR134442.1\|VEH88973.1\|306926_308546_-\|CRISPR-associated-RAMP-protein,-SSO1426-family	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	4.71933e-12
LR134442.1\|VEH88962.1\|291164_293993_+\|Calcium-transporting-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
LR134442.1\|VEH88964.1\|295259_296675_+\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.70244e-109
LR134442.1\|VEH88971.1\|305522_306407_-\|CRISPR-associated-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.32656e-13
LR134442.1\|VEH88966.1\|298974_299520_+\|Transposase-DDE-domain	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	5.22515e-23
LR134442.1\|VEH88965.1\|296680_296965_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.30384e-17

>LR134442.1|VEH88965.1|296680_296965_+|CRISPR-associated-endoribonuclease-Cas2
MARRRYLIAYDIANPKRLRAVVKLMEDFGTRLQYSVFLCDLRRAELAVWRTALTDVVELKEDSVVVIDLGAVGATPIEVIGLARNLPSQGAVVV
>LR134442.1|VEH88964.1|295259_296675_+|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO
MGLSAVVDRVDHREGVSVPVDHKKGRPQADGQPWAADRAQVLVYAALLDAAGYTVDHAELFYAEDHVTVLVAWDDDAATELRGLVAAARELAESPVPPPPPIDSPRCPRCSLAGLCLPDETNALTERQAANKKRVLPRNPDERPLYVTEQGAYVSSRSGRIVVTKDGEELVGLRLLDISQLCVFGGVQISTQAITRILSTGAPVLWMSYGGWLNGWAQGSPSKHVQLLRRQVLSPDGTAIARQIISGKIRNQRTMLRRNAKSTIEPGVLGSLRELAGSAAAADSSSSLLGYEGTAARLYFENFTQMLSSQVELGQEFDTNGRTRRPPKDPINALLGLCYSLLVKDLVAVCLGVGLDPYIGVFHASRYGRPALALDLTEEFRPLVADSVVLNVMNNGEIGSEDFMRRGIGCQLTKQGRKKLIGAYERRLETEVTHPVFGYRISYRRCLEVQTRLLAAVLIGEIPEYKPFVTR
>LR134442.1|VEH88963.1|294226_295027_+|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MGPAMPDRSRGVASRRVSVIRWELRTRRPYPAWAGILATDRLRHLVVSGLDESTDPEDFLLTGHGAGPLTEHRFGYHAHAHWLWIEDDEHHVVGLALWCRPGLAAPQRDRVLSVRRLSRPDFNDAGFRPGDLSISGVGSAADALPELGSGLVSTAWASAVPYLLTLHTKRSRQWEDVVAQDVQRYLDHYYGVGAVRLITLQFGRAASNYRTSRWDPADSPSEAVWIERMEVDVPLTGPVCLGRHSHFGFGRFVPLADGLVTDPSLP
>LR134442.1|VEH88962.1|291164_293993_+|Calcium-transporting-ATPase
MTMTAPAAPQTPGGAPDEHPSVLSPEQVLARMGADAEQGLSPAEAASRLERHGPNELTGAPPVPAWRRFLAQFADPLVYLLLAAVGISVAAWVLEDAAGVPIEAVVIVAILLANAIIGFVQENRADDAVAALSTMTAATSTVLRGGRLDTIPSAEVVPGDILVLAEGDAVAADARLIQASALRIQESSLTGESEAVDKTPEALDAPAGIGDRHDMVHKGTDVVSGVGRAVVTATGMATEVGRIATLLDETPEEDTPLQREIASISKALGLVVIAIAVIVMGVMVLVNGVSSFHELVDVLLTGVSLAVAAVPEGLPAILTVVLATGVRALARRNAVMKTLHSVETLGSSSVICSDKTGTLTRNEMTLRTVVAAAGRAELTGTGYAPDGELVVTGDRDAVRAVLVGGALANDAQLHHDGGEWTIQGDPTEAAFLVACAKSGLDVELAGWRRRSEVPFSSERKMMSVLVERDGQRRVWSKGAPDVLLGRCTDERVGGVVQPLTETRRAELLGLIEDLSANGYRTLGVAARPGDGIGELTEGDEQRLAWIGVVGIIDPPRKEAAEAIGQAHRAGIRTIMITGDHPVTASRIAADLGISGDREPRALTGAQLDELGPGRLPGAVRDVDVYARVAPEHKLRIVEALQSDGSTVAMTGDGVNDAPALKRADIGVAMGITGTEVTKQAGRMILADDNYATIVAAVRQGRVIVDNIKKFLRYLLSSNMGEVCTVLFGVLLAGALGLSDPANPGATFVPLLVTQILWINLVTDSTPALAMGVDPEIDDVMARPPRRQTDRILDRAMWIRIIAVGAVMGLVTLAVYDFALPGGLFTGMLSGVPAGEQFAVARTMAFSTLVFAQLFNALNSRSADGSAFHRLFSNRWLWASLGLGVVLQVAVVEIGFLQSAFGTTSLDLAHWGVVVAASSLILVYEEIVKAVHRAIARARGKRR
>LR134442.1|VEH88961.1|290375_291029_+|Galactoside-O-acetyltransferase
MDERVDIETKYHGMLNSGELYDGANRELTAHQHTLTEKLNEFNATRDTPEGLAERDRLLREMLGTHGEGLRLSPPVTASYGLRHVHVGRNVVIGPNASIIDDADVVIGDDVVIGPNVTITTTEYPVSPRLRRHGLQFNKPVRIGDNVLVCAGAVIQAGVTVGENSIVRAGGVVIRDVPADSIVGGVPARVLRRIDEVEDRFYDHGRPIPQEILDKYQ
>LR134442.1|VEH88960.1|289448_290243_+|Uncharacterized-isomerase-yddE
MRFEYYVVDAFAERRFGGNPAGVCVLDEWIDDEVMQAVAAENRLSETAFVVRQPDGGYELRWFTPSCEIDLCGHATFGAAHVLFGFHEQEAERIDFHATMKGYELCCERDGDMVRMTFPRIVPSPFSCEDDIEAALGARPDQVLATERDLICVFGDEEAVRAMRPRFELVAGLSHGLSVYVTAPAADYDYVARAFWPKIGIDEDPVCGSMQSALVPYWSQRLGTRELVCFEPSEREGTVWCRDLEDAVSISGHGRLYLRGEIEV
>LR134442.1|VEH88959.1|288051_289377_+|Bacillibactin-exporter
MTDGEAGRKGRTVPDSRSTRTAESPSFASGDVQVGVVAFRCQRPIQVVLWIVFLVYLGQMSLNPVIAPLAREVGLAEWQIGVTISVAAVMVVLCSQFWGRRSQSWGSGRVLGIAMTLAALAMVAFTLVSWAGMRGTLPGGVLFALFVVLRGVCYGTAISAVLPTAQAHIAAVTAQGPERVRGMAGVGAAQSTAMVLGSAVGGLLAGIGLLLPIALVPVELMIGLLLVAWRLRRRSHAQLIAAPARISARDARVWPFLVAGFGMFTAFGFVQVIAGFLVQDRLGLDASRTGVVTGVVLLSAGLGMIVSQSVIVPRSRWLPVRLLRVGTLIAAVGFALMAAAGALWLLVVAVSLIGIGLGIATPGYTSGPSMLVGREEQGGLAGLLGAVSGLSYVLSPTASTVLYGISWLLPVLAGAAMMAAVWLFLLAHPRFREQVRAVPLA
>LR134442.1|VEH88958.1|286178_287882_-|Iron-import-ATP-binding/permease-protein-IrtA
MMSEISLLLRVMRPVRAHLVRAAIFETVGAAARLGLGFLAAGALAQITGAGSRSAAWWGFWLAAAAGSAGLSWLGRWRGGYWAHRADNLLQRLLRERAVDRIRAKPLSWVDEHGSVAVKRMVTEDVDALHHLTAHALGDLVSALVQTVIGLALLLVIAPLPTLVALVPAMIGLGLARSQRRAMPEQMRRYDEACERVDRAAVEFVQGIAPLKVFGGTERGLSRFRSAAADYASFVAGWARTVTPTMVAQQILLSAPPVWAVLALLGGSGRLEFAGLVTIAVVLPLLLSPVESLAFALQDLAGAVAAAERIDALIAEADDEPVSVPATPEPFGEDQACGLVLDEVSLRYGSTVGLERVSAVLPAGGLTVLLGHSGAGKSTLLEVIAGLGEPSSGSVHRSPHAVVSALWQRPFLLRASVLDNLRLARPDADEQDCRRAAVLAGIDERISALPQGYRTVLGQGVVLSGGERQRLCLARCLVARPSLLLLDEPASAVDTVSAHLMDRALAALRGRCTVVRADHRPSVALDADLVLVMDHGRVVEAGSAQELLASGGRFAALLTAGEAGGDS
>LR134442.1|VEH88957.1|284478_286182_-|Iron-import-ATP-binding/permease-protein-IrtB
MTGLWRILGTRTRIRLVVCIAAAVLAALAEVALVADVGSLAGALVADRPASLVAARLSITAAGWAVLCAVAVAAGRDCGYGMSAALHDSLAAQLLRLPLGWFGPRRHGQVSHLLGTRVMSVMSIPAHLLIPALRAVVLPAGLIVLIARFDPLAGLVALLWTPVLVMVQRWSARRAAAGDAALAGARAEAADRVIEYVDGQRSLRLLPDAEHAASLVKQSVGELTGRMEEQVDSVLRVLGLFGLSVQLMLITVGGTGLLRAGARSTADVTVFVLAAVVLASTLQAAAGLSATIRASCESAAELRGFLALPALPEPAAPVSPAPRGEIIVEDAWAGEDREHPLLRGVSFTAPPGSVTAVVGSSGAGKTSLLRLLARFFDPYRGRVLLDGADCRLLGSAQVHERIAMVFQDVELFAGSLEENIRLGRPDASDTELKEAMAGAGMGEMIERLPHGMATTVGELGVGVSGGERQRVCVARALLKRAPVLLLDEASSSLDAHHQQLLEQTVAALRGSTTVVLVTHRLALARTADQILVLDQGRIVERGRHDELLAAGGLYARMWAEEAGESPE
>LR134442.1|VEH88956.1|282226_284458_+|Arginine-transport-ATP-binding-protein-ArtP
MGARCSGPLRTGAPVVVLLAVIVAVGAGPALAPHSITEPLGAPWGVAPGALLGTDSLGRDVWSRTLAGGVRLVQASIPIGLAITALGAVLGLLATRSARLSRLLGVVTATTMAVPGSVMVLCCAVVLPSVAAVALGMLFLGVPFSARIIRAAAGPMLDAEFLRAAERRGEGHGYIVVGELLPALSGTIIADAAIRVLAALQLLAALHVLGFGPPPPAADWAMMVRENLPGVTLAPWSVAAPAAALAGVSVTVMLCLNALSRSLAPSAAARGGRTGRLPRGGAVADELLRVRGLRLGPASEPLVRIAELTLAPGEILGVCGPSGAGKSSLAETLAGAPRPGLELSAAEFVIAGRALPRGERARARLRRRLIGWSEQDPIRTIDGRRTVIDVIADGRRLAGRVPGLLERLGLPRGLGDRPARALSGGQAVRICLARALAGEPAIIVLDEPTAGLDPDTIGVVTSALGDFAATGGGAIVISHDLPWLATVADRVIEVREGLARPVEGAPQAAADTGRSARLSSGGERLLGHWSGLSVDVEGRPSLLPWDLDLHAGEIVAVLAPSGSGKSSVLRALGGDRLPSQVRVGGEGLPGEGGVDPGQTQLMVQDSATALNPGRSLRAQVARQARVVAGLSRRDALLAAEQMLARLGLHEPVISRRPGECSGGERQRAALARALVIPAPVLLLDEPTSALDPASRARVMELLRERAQAGHGILVATHDEEAARAADRSTRPPLAQDAQDATVP
>LR134442.1|VEH88966.1|298974_299520_+|Transposase-DDE-domain
MDHAQTLIVDGTLVPCWDCKHTQGPYSGKHHTPGLNLHIASTLTGKLIWVGSTHDTKALQLIGFLDIFPDTPPLGDKGYIGLGMTTPIREQPRGGLTGWQKEYSKTINSLRAPVERAIAQVKTWRTLHTGYRRPLHTFPQTITAATALEFCKTVLNNPPGAVTRAATSNFPIYSDGAPLRP
>LR134442.1|VEH88967.1|299765_301325_-|Transposase
MAYVRKVRTASGATAVQIAEYRDGRDRVLEHLGSAHTPEELSALVVAARRKLAPLQDELDFLSPAAASRSLTITDKRSTALWDSLRRVYTDLGFEVLADDVFAQLVLARVIKPTSKAGSIRELDSLGIPHAGLRSVFRCLARVQAEDYRSKISRLCFKNARVDGNLTLVLYDVTTLYFEAEREDELRKVGFSKERRVDPQIVVGLLTDRTGFPLELTCWEGSKAETLTMLPTVMGFLTRHGLGDLVVVADAGMLSATNLAALDEAGLKFIVGSRQVKAPIDLESHFHWHGDSFEDGQVIDTITVRHGNCREAVSDSRFRDEPVWDPEVHSGSWRAVWAYSRKRAVKDTRNLKKMTDRAIAVINGTKTVKSPRFVKTLQGKKILDEKALDRAHRLVGLKGYVTNMPATRISAAELIADYHELWLIEKSFRMSKSDLKARPIFHHTREAIEAHLTIVMAALAVSHRLQTITGKSVAKIIETLEPIHEMNVNIAGQTLHAHDQITPAAQTILDTLGLTWPPH
>LR134442.1|VEH88968.1|301874_302969_+|Transposase-and-inactivated-derivatives
MQVEVTPEETAVLIRWKKRTDNYMLVRMKAEAILYASEGVGLGIIAKMVERSEKTVREWLSGWQSSRMCSVLTGHAGNQNAAKLTRTQKEDLKTVLAQPPSRSGIDAEFWDVPALRDVVKILFDVEYESESSYQLLLRFCGLSFKLPDPFDKHRDEQAITRRMAEVKAQVNQLLEAGCQVYAVDEVRLEHEAETRRMWLPRGQRTKLYVDRQKVSQSFFGALSLTNKKMRLYPIEGNQNTDRSLSPWNGCSVKPGPRRSRSCWTTPGSTTPKPSPACMSRASYWNASPRSSCRLMRPTTTRSNTSGTPPKPISRTFSEKPRTKLSELSLHTSPDAPSTTTSNTSPNPNQKPILFHDGHIQMGLH
>LR134442.1|VEH88969.1|303072_303654_-|CRISPR-associated-protein
MTARSWVEVGSVLRCTMRFTNLSREELGALIWLLTPENLVPASEKQKDPRAIGFLRMGMGKPFGLGVVETRIAKNGLRAVKNEELASDYVNLNGCLGSVTSPAEIAEFSLPNGNNLPKTPWVKALQRAAFGYSDGTEVRYMTLDENKENNKSDSKTGKPKDKRGLSPVDLAANTPTPIIIPRPNKQRRRHNSH
>LR134442.1|VEH88970.1|304419_305487_-|Transposase-and-inactivated-derivatives
MQIEVAPEETAVLIRWKKRTDNYVLVRMKAEAILYASRGVDVGIIAEMVERSEKTVREWLAEWQASRMCSVLTGHAGNQNAAKLTRTQKEDLKTVLALPPSRSGIDAEFWGVPALRDVVKILFDVEYESESSYQLLLRFCGLSFKLPDPFDKHRDEQAITRRMTEVKTQVNDLLGAGCEVYAIDEVRLEHEAETRRMWLPKGQRTKLYVDRQKVSQSFFGALSLTDKKVRLYPIEGNQNTEQIILALERLQRETKADRIAVVLDNARFHHAKALTSLYQPGQLLERITPVFLPPYAPDHNPVEHVWGTAKTNIANIQHQTPEQTFGAFASYITGRTFDYDFEHLPKPQPETDLVS
>LR134442.1|VEH88971.1|305522_306407_-|CRISPR-associated-protein
MGEYEPFHSAVNRIPVLRQPSQQMAGKGLLPKDLFSDGPATGHDHLAADRWSGSIDLEMTVRTPLVFGEQDEGEISLPMVDDKLVVPPTMVKGMISRAFEILTCSRFRVFGAVENTSGLRGSKNDHSQRLTYRADPAAANNLFPGRVCTTTDRSLAVEILDGKNSQFRSALIRDDVRKGHGDIVRDNHPEISTGPGNVVTQNQVLQRFRSLTPHGQWTRVRLTEWQKGKSGRHLMVTGVWNGEDLENFFTITGANSVRTLDVWGYPCRTSPDGKTSRELYDEKIYGRHETKSYF
>LR134442.1|VEH88972.1|306408_306930_-|Uncharacterised-protein
MMSSTEKAEPALLEGGRLASTSFPKDSLGEALARLTGAAPQWQGIAFTTAGARSVRAASAGALMTRLDGADHEVPLGTVYELRLWAVGQQALDGAKARELRWLNGSGSAEISVHEGAAGVGQDCWYRTNSYLQHSDIADLDMKPRMTGVEVFVQEDGYGNVVFADELMTGRWA
>LR134442.1|VEH88973.1|306926_308546_-|CRISPR-associated-RAMP-protein,-SSO1426-family
MRTRYELTVHLVTRSPLHSGGVDVPVDRSRSGSDREAEPRCFARDGHGNPVITGRSVKGALRAACERLTDDRIGGLGLLWGNQDRAAALTFHAIELDKTAVSTDPADAEGDEGRSPLARRTGIAVDRYWGTAGDTALFAHEYVPAGRSLELTITAQAGTPDGVSPVGGGAPQQAASPEQVEQLFGLILGLFKAGHVGFGGRRNAGWGRVELDDNRPWLLTRSELGSREGLLTWLAGGQNITERIRPADCSGDERVRINIGWDSPSGILVAEPREKKANEPTEEADRQPADGEPSSNETEPTRPLRCGPGKNDPLVLPGSSVRGALRSRASRIARTVLAARDMLGDQLDWSETGVHDQLANDPVLVRDLFGSTEHRGALTVLDTLAAGHVSGRRITHNAGDRWTGGAAEGALYSEEVHDVDWNSIELELDPGMLPEEADLNRRRAAWCLLGLTLAELAAGTLPLGSRGTRGLGQVRVTRISVEGGPGIVGEPWDLHDEGSEPLPEQILARLRQVQIEPNPAAGDDGWTGWSSYLVEGEDA
>LR134442.1|VEH88974.1|308542_310504_-|Uncharacterised-protein
MSRMSAPARQGALEFPVTIVFRSDWGVGTGTGIAGGVSSVVEKDANGRPVVRGTALAGVVREQAATAARALDEAPRGPWHDFVTALFGTPESPRLVSFTDATVPDDAPDVAVHEVVSLSIDEDTGTAKPEFLRFFERTAACTLHGRVSLVQTDLHGRPLVWDAEQRDGALLVLALAGLLVRGIGSNRSDGDGLCDVLIGDAMDAPRAREWCRARLGAWTGPAPTPPAADQRFTAPLLAPGRVAAAGDPGFVRADLELRLLTPVVSYEVPLFNEVRSLDFLRGTVLLPWVHRRLRRAFPDDEMVRDAVVAGDLLVSDATAMAGGVRGLPAPLVLTRPKTPDQRSAALPMRNPLFGASPPAAGDADGAQVPVRSGYVFPGFVPADIPSTGEEAPAGSLGAPALVGRQSTAHDPATGAASQGRLFLVRALPAGLRMGASVLVSQRLFEHLGERLHEAFPPREPVTAWLGSRRMGGSYGRVECRAGGFVPARPDRPAWDGDGATTLWFTSDVLARSGALGPGGTVSDLLAALGRGGADVELARAEGALAAGVRHRRVDSWSAADQQPRATRVAARAGSVLRVQPVPGADPGAVIAALARLSVTGFGELTAQGFGRFVLGHELLGRQDFGLTRLSQQHLLSGDGNDQKAGPTAEGGLR
>LR134442.1|VEH88975.1|310500_312261_-|Uncharacterised-protein
MYAVLLDVNSKQRFIFESPRLRESIGASHQITRLGCWVAHALSKTPDTDDRCEPDNHQWVSRSSGRVIVTVDDEAAARNVIRDVTLRALGEAPGMDVSGVYVKTGSEYFGADDLRALNEAAAEYALRRPPADGRFARMPFLAGAGDSALPAAPPLNQDDEPDEDKKEPYSLPSRHKRLTAYTARSELLDDLAPTGKDEKLARDPTRLERMLQPDNEADPQGGLSKVAIVHIDGNGVGAIMRDLAAAMRRVPHEDFTQAVKCTPGDADALRKFTLAVNENLDRAVRQACRLAWRDVADWAEKDAVTAGREYKAIPVVPVLLGGDDVTVITSGDYALPFAAAYLRHYEQATAADPLLRHLGDHPDGQAGPMTAAAGVAVVRFKFPFHLAYDLAERLVDEAKEVGKACSPSVSTLTYHVLLDTTVLDPEELLAAYERLSNRPFVLGSGAAAPSQGLAGHAAWPSVCERVRLFTGAISRNDDDRQDGFPRTRAARIRTMMSDAAQAELAGNTAERDRLLEQAENEWRDAEACFPDAKRLGGKQTMFDLMELTDLLPASYLKEPLGTASPPPSEPQRPSAADSSTGEEGQA

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Crispr_ID: LR134442_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_3

299480-299739

TypeIII

Consensus_repeat	Method
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	PILER-CR
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CRISPRCasFinder
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CRT

3 spacers

cas2,cas1,csb2gr5,csm3gr7,cas10

The CRISPR arrays of LR134442_3

>merge|LR134442|3|299480-299739|PILER-CR,CRISPRCasFinder,CRT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACCATGATCACATCGGACAACCAGCGGACGGAATCCGTGGCCTATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACTAGCCGATTTCGCGGAAATAGTAATGCTGGACGATGCATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACTACTGCGGCGCCACACGGAACAGCGACAGCTGACTGAGATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC

>LR134442|3|2|299480-299739|PILER-CR
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CATGATCACATCGGACAACCAGCGGACGGAATCCGTGGCCT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TAGCCGATTTCGCGGAAATAGTAATGCTGGACGATGC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TACTGCGGCGCCACACGGAACAGCGACAGCTGACTGAG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC

>LR134442|3|3|299480-299739|CRISPRCasFinder
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CATGATCACATCGGACAACCAGCGGACGGAATCCGTGGCCT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TAGCCGATTTCGCGGAAATAGTAATGCTGGACGATGC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TACTGCGGCGCCACACGGAACAGCGACAGCTGACTGAG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC

>LR134442|3|2|299480-299739|CRT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CATGATCACATCGGACAACCAGCGGACGGAATCCGTGGCCT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TAGCCGATTTCGCGGAAATAGTAATGCTGGACGATGC
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TACTGCGGCGCCACACGGAACAGCGACAGCTGACTGAG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH88959.1\|288051_289377_+\|Bacillibactin-exporter	unknown	unknown	gnl\|CDD\|340888
LR134442.1\|VEH88958.1\|286178_287882_-\|Iron-import-ATP-binding/permease-protein-IrtA	unknown	unknown	gnl\|CDD\|224055
LR134442.1\|VEH88976.1\|312278_313622_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380122
LR134442.1\|VEH88961.1\|290375_291029_+\|Galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
LR134442.1\|VEH88970.1\|304419_305487_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|315923
LR134442.1\|VEH88957.1\|284478_286182_-\|Iron-import-ATP-binding/permease-protein-IrtB	unknown	unknown	gnl\|CDD\|224055
LR134442.1\|VEH88972.1\|306408_306930_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH88960.1\|289448_290243_+\|Uncharacterized-isomerase-yddE	unknown	unknown	gnl\|CDD\|223461
LR134442.1\|VEH88969.1\|303072_303654_-\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
LR134442.1\|VEH88956.1\|282226_284458_+\|Arginine-transport-ATP-binding-protein-ArtP	unknown	unknown	gnl\|CDD\|224048
LR134442.1\|VEH88967.1\|299765_301325_-\|Transposase	unknown	unknown	gnl\|CDD\|227708
LR134442.1\|VEH88968.1\|301874_302969_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|225949
LR134442.1\|VEH88974.1\|308542_310504_-\|Uncharacterised-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187857
LR134442.1\|VEH88963.1\|294226_295027_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
LR134442.1\|VEH88973.1\|306926_308546_-\|CRISPR-associated-RAMP-protein,-SSO1426-family	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
LR134442.1\|VEH88975.1\|310500_312261_-\|Uncharacterised-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|187811
LR134442.1\|VEH88962.1\|291164_293993_+\|Calcium-transporting-ATPase	unknown	unknown	gnl\|CDD\|319781
LR134442.1\|VEH88964.1\|295259_296675_+\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LR134442.1\|VEH88971.1\|305522_306407_-\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
LR134442.1\|VEH88965.1\|296680_296965_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH88959.1\|288051_289377_+\|Bacillibactin-exporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.60622e-26
LR134442.1\|VEH88958.1\|286178_287882_-\|Iron-import-ATP-binding/permease-protein-IrtA	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.64664e-88
LR134442.1\|VEH88976.1\|312278_313622_-\|Uncharacterised-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	2.42208e-21
LR134442.1\|VEH88961.1\|290375_291029_+\|Galactoside-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	1.52491e-59
LR134442.1\|VEH88970.1\|304419_305487_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.43608e-24
LR134442.1\|VEH88957.1\|284478_286182_-\|Iron-import-ATP-binding/permease-protein-IrtB	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.97259e-111
LR134442.1\|VEH88975.1\|310500_312261_-\|Uncharacterised-protein	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0.00133485
LR134442.1\|VEH88960.1\|289448_290243_+\|Uncharacterized-isomerase-yddE	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	7.04187e-65
LR134442.1\|VEH88969.1\|303072_303654_-\|CRISPR-associated-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	2.11652e-11
LR134442.1\|VEH88956.1\|282226_284458_+\|Arginine-transport-ATP-binding-protein-ArtP	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	9.21752e-69
LR134442.1\|VEH88967.1\|299765_301325_-\|Transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	1.01477e-11
LR134442.1\|VEH88968.1\|301874_302969_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.42747e-06
LR134442.1\|VEH88974.1\|308542_310504_-\|Uncharacterised-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	9.32293e-09
LR134442.1\|VEH88963.1\|294226_295027_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.97601e-06
LR134442.1\|VEH88973.1\|306926_308546_-\|CRISPR-associated-RAMP-protein,-SSO1426-family	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	4.71933e-12
LR134442.1\|VEH88962.1\|291164_293993_+\|Calcium-transporting-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
LR134442.1\|VEH88964.1\|295259_296675_+\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.70244e-109
LR134442.1\|VEH88971.1\|305522_306407_-\|CRISPR-associated-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.32656e-13
LR134442.1\|VEH88965.1\|296680_296965_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.30384e-17

>LR134442.1|VEH88965.1|296680_296965_+|CRISPR-associated-endoribonuclease-Cas2
MARRRYLIAYDIANPKRLRAVVKLMEDFGTRLQYSVFLCDLRRAELAVWRTALTDVVELKEDSVVVIDLGAVGATPIEVIGLARNLPSQGAVVV
>LR134442.1|VEH88964.1|295259_296675_+|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO
MGLSAVVDRVDHREGVSVPVDHKKGRPQADGQPWAADRAQVLVYAALLDAAGYTVDHAELFYAEDHVTVLVAWDDDAATELRGLVAAARELAESPVPPPPPIDSPRCPRCSLAGLCLPDETNALTERQAANKKRVLPRNPDERPLYVTEQGAYVSSRSGRIVVTKDGEELVGLRLLDISQLCVFGGVQISTQAITRILSTGAPVLWMSYGGWLNGWAQGSPSKHVQLLRRQVLSPDGTAIARQIISGKIRNQRTMLRRNAKSTIEPGVLGSLRELAGSAAAADSSSSLLGYEGTAARLYFENFTQMLSSQVELGQEFDTNGRTRRPPKDPINALLGLCYSLLVKDLVAVCLGVGLDPYIGVFHASRYGRPALALDLTEEFRPLVADSVVLNVMNNGEIGSEDFMRRGIGCQLTKQGRKKLIGAYERRLETEVTHPVFGYRISYRRCLEVQTRLLAAVLIGEIPEYKPFVTR
>LR134442.1|VEH88963.1|294226_295027_+|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MGPAMPDRSRGVASRRVSVIRWELRTRRPYPAWAGILATDRLRHLVVSGLDESTDPEDFLLTGHGAGPLTEHRFGYHAHAHWLWIEDDEHHVVGLALWCRPGLAAPQRDRVLSVRRLSRPDFNDAGFRPGDLSISGVGSAADALPELGSGLVSTAWASAVPYLLTLHTKRSRQWEDVVAQDVQRYLDHYYGVGAVRLITLQFGRAASNYRTSRWDPADSPSEAVWIERMEVDVPLTGPVCLGRHSHFGFGRFVPLADGLVTDPSLP
>LR134442.1|VEH88962.1|291164_293993_+|Calcium-transporting-ATPase
MTMTAPAAPQTPGGAPDEHPSVLSPEQVLARMGADAEQGLSPAEAASRLERHGPNELTGAPPVPAWRRFLAQFADPLVYLLLAAVGISVAAWVLEDAAGVPIEAVVIVAILLANAIIGFVQENRADDAVAALSTMTAATSTVLRGGRLDTIPSAEVVPGDILVLAEGDAVAADARLIQASALRIQESSLTGESEAVDKTPEALDAPAGIGDRHDMVHKGTDVVSGVGRAVVTATGMATEVGRIATLLDETPEEDTPLQREIASISKALGLVVIAIAVIVMGVMVLVNGVSSFHELVDVLLTGVSLAVAAVPEGLPAILTVVLATGVRALARRNAVMKTLHSVETLGSSSVICSDKTGTLTRNEMTLRTVVAAAGRAELTGTGYAPDGELVVTGDRDAVRAVLVGGALANDAQLHHDGGEWTIQGDPTEAAFLVACAKSGLDVELAGWRRRSEVPFSSERKMMSVLVERDGQRRVWSKGAPDVLLGRCTDERVGGVVQPLTETRRAELLGLIEDLSANGYRTLGVAARPGDGIGELTEGDEQRLAWIGVVGIIDPPRKEAAEAIGQAHRAGIRTIMITGDHPVTASRIAADLGISGDREPRALTGAQLDELGPGRLPGAVRDVDVYARVAPEHKLRIVEALQSDGSTVAMTGDGVNDAPALKRADIGVAMGITGTEVTKQAGRMILADDNYATIVAAVRQGRVIVDNIKKFLRYLLSSNMGEVCTVLFGVLLAGALGLSDPANPGATFVPLLVTQILWINLVTDSTPALAMGVDPEIDDVMARPPRRQTDRILDRAMWIRIIAVGAVMGLVTLAVYDFALPGGLFTGMLSGVPAGEQFAVARTMAFSTLVFAQLFNALNSRSADGSAFHRLFSNRWLWASLGLGVVLQVAVVEIGFLQSAFGTTSLDLAHWGVVVAASSLILVYEEIVKAVHRAIARARGKRR
>LR134442.1|VEH88961.1|290375_291029_+|Galactoside-O-acetyltransferase
MDERVDIETKYHGMLNSGELYDGANRELTAHQHTLTEKLNEFNATRDTPEGLAERDRLLREMLGTHGEGLRLSPPVTASYGLRHVHVGRNVVIGPNASIIDDADVVIGDDVVIGPNVTITTTEYPVSPRLRRHGLQFNKPVRIGDNVLVCAGAVIQAGVTVGENSIVRAGGVVIRDVPADSIVGGVPARVLRRIDEVEDRFYDHGRPIPQEILDKYQ
>LR134442.1|VEH88960.1|289448_290243_+|Uncharacterized-isomerase-yddE
MRFEYYVVDAFAERRFGGNPAGVCVLDEWIDDEVMQAVAAENRLSETAFVVRQPDGGYELRWFTPSCEIDLCGHATFGAAHVLFGFHEQEAERIDFHATMKGYELCCERDGDMVRMTFPRIVPSPFSCEDDIEAALGARPDQVLATERDLICVFGDEEAVRAMRPRFELVAGLSHGLSVYVTAPAADYDYVARAFWPKIGIDEDPVCGSMQSALVPYWSQRLGTRELVCFEPSEREGTVWCRDLEDAVSISGHGRLYLRGEIEV
>LR134442.1|VEH88959.1|288051_289377_+|Bacillibactin-exporter
MTDGEAGRKGRTVPDSRSTRTAESPSFASGDVQVGVVAFRCQRPIQVVLWIVFLVYLGQMSLNPVIAPLAREVGLAEWQIGVTISVAAVMVVLCSQFWGRRSQSWGSGRVLGIAMTLAALAMVAFTLVSWAGMRGTLPGGVLFALFVVLRGVCYGTAISAVLPTAQAHIAAVTAQGPERVRGMAGVGAAQSTAMVLGSAVGGLLAGIGLLLPIALVPVELMIGLLLVAWRLRRRSHAQLIAAPARISARDARVWPFLVAGFGMFTAFGFVQVIAGFLVQDRLGLDASRTGVVTGVVLLSAGLGMIVSQSVIVPRSRWLPVRLLRVGTLIAAVGFALMAAAGALWLLVVAVSLIGIGLGIATPGYTSGPSMLVGREEQGGLAGLLGAVSGLSYVLSPTASTVLYGISWLLPVLAGAAMMAAVWLFLLAHPRFREQVRAVPLA
>LR134442.1|VEH88958.1|286178_287882_-|Iron-import-ATP-binding/permease-protein-IrtA
MMSEISLLLRVMRPVRAHLVRAAIFETVGAAARLGLGFLAAGALAQITGAGSRSAAWWGFWLAAAAGSAGLSWLGRWRGGYWAHRADNLLQRLLRERAVDRIRAKPLSWVDEHGSVAVKRMVTEDVDALHHLTAHALGDLVSALVQTVIGLALLLVIAPLPTLVALVPAMIGLGLARSQRRAMPEQMRRYDEACERVDRAAVEFVQGIAPLKVFGGTERGLSRFRSAAADYASFVAGWARTVTPTMVAQQILLSAPPVWAVLALLGGSGRLEFAGLVTIAVVLPLLLSPVESLAFALQDLAGAVAAAERIDALIAEADDEPVSVPATPEPFGEDQACGLVLDEVSLRYGSTVGLERVSAVLPAGGLTVLLGHSGAGKSTLLEVIAGLGEPSSGSVHRSPHAVVSALWQRPFLLRASVLDNLRLARPDADEQDCRRAAVLAGIDERISALPQGYRTVLGQGVVLSGGERQRLCLARCLVARPSLLLLDEPASAVDTVSAHLMDRALAALRGRCTVVRADHRPSVALDADLVLVMDHGRVVEAGSAQELLASGGRFAALLTAGEAGGDS
>LR134442.1|VEH88957.1|284478_286182_-|Iron-import-ATP-binding/permease-protein-IrtB
MTGLWRILGTRTRIRLVVCIAAAVLAALAEVALVADVGSLAGALVADRPASLVAARLSITAAGWAVLCAVAVAAGRDCGYGMSAALHDSLAAQLLRLPLGWFGPRRHGQVSHLLGTRVMSVMSIPAHLLIPALRAVVLPAGLIVLIARFDPLAGLVALLWTPVLVMVQRWSARRAAAGDAALAGARAEAADRVIEYVDGQRSLRLLPDAEHAASLVKQSVGELTGRMEEQVDSVLRVLGLFGLSVQLMLITVGGTGLLRAGARSTADVTVFVLAAVVLASTLQAAAGLSATIRASCESAAELRGFLALPALPEPAAPVSPAPRGEIIVEDAWAGEDREHPLLRGVSFTAPPGSVTAVVGSSGAGKTSLLRLLARFFDPYRGRVLLDGADCRLLGSAQVHERIAMVFQDVELFAGSLEENIRLGRPDASDTELKEAMAGAGMGEMIERLPHGMATTVGELGVGVSGGERQRVCVARALLKRAPVLLLDEASSSLDAHHQQLLEQTVAALRGSTTVVLVTHRLALARTADQILVLDQGRIVERGRHDELLAAGGLYARMWAEEAGESPE
>LR134442.1|VEH88956.1|282226_284458_+|Arginine-transport-ATP-binding-protein-ArtP
MGARCSGPLRTGAPVVVLLAVIVAVGAGPALAPHSITEPLGAPWGVAPGALLGTDSLGRDVWSRTLAGGVRLVQASIPIGLAITALGAVLGLLATRSARLSRLLGVVTATTMAVPGSVMVLCCAVVLPSVAAVALGMLFLGVPFSARIIRAAAGPMLDAEFLRAAERRGEGHGYIVVGELLPALSGTIIADAAIRVLAALQLLAALHVLGFGPPPPAADWAMMVRENLPGVTLAPWSVAAPAAALAGVSVTVMLCLNALSRSLAPSAAARGGRTGRLPRGGAVADELLRVRGLRLGPASEPLVRIAELTLAPGEILGVCGPSGAGKSSLAETLAGAPRPGLELSAAEFVIAGRALPRGERARARLRRRLIGWSEQDPIRTIDGRRTVIDVIADGRRLAGRVPGLLERLGLPRGLGDRPARALSGGQAVRICLARALAGEPAIIVLDEPTAGLDPDTIGVVTSALGDFAATGGGAIVISHDLPWLATVADRVIEVREGLARPVEGAPQAAADTGRSARLSSGGERLLGHWSGLSVDVEGRPSLLPWDLDLHAGEIVAVLAPSGSGKSSVLRALGGDRLPSQVRVGGEGLPGEGGVDPGQTQLMVQDSATALNPGRSLRAQVARQARVVAGLSRRDALLAAEQMLARLGLHEPVISRRPGECSGGERQRAALARALVIPAPVLLLDEPTSALDPASRARVMELLRERAQAGHGILVATHDEEAARAADRSTRPPLAQDAQDATVP
>LR134442.1|VEH88967.1|299765_301325_-|Transposase
MAYVRKVRTASGATAVQIAEYRDGRDRVLEHLGSAHTPEELSALVVAARRKLAPLQDELDFLSPAAASRSLTITDKRSTALWDSLRRVYTDLGFEVLADDVFAQLVLARVIKPTSKAGSIRELDSLGIPHAGLRSVFRCLARVQAEDYRSKISRLCFKNARVDGNLTLVLYDVTTLYFEAEREDELRKVGFSKERRVDPQIVVGLLTDRTGFPLELTCWEGSKAETLTMLPTVMGFLTRHGLGDLVVVADAGMLSATNLAALDEAGLKFIVGSRQVKAPIDLESHFHWHGDSFEDGQVIDTITVRHGNCREAVSDSRFRDEPVWDPEVHSGSWRAVWAYSRKRAVKDTRNLKKMTDRAIAVINGTKTVKSPRFVKTLQGKKILDEKALDRAHRLVGLKGYVTNMPATRISAAELIADYHELWLIEKSFRMSKSDLKARPIFHHTREAIEAHLTIVMAALAVSHRLQTITGKSVAKIIETLEPIHEMNVNIAGQTLHAHDQITPAAQTILDTLGLTWPPH
>LR134442.1|VEH88968.1|301874_302969_+|Transposase-and-inactivated-derivatives
MQVEVTPEETAVLIRWKKRTDNYMLVRMKAEAILYASEGVGLGIIAKMVERSEKTVREWLSGWQSSRMCSVLTGHAGNQNAAKLTRTQKEDLKTVLAQPPSRSGIDAEFWDVPALRDVVKILFDVEYESESSYQLLLRFCGLSFKLPDPFDKHRDEQAITRRMAEVKAQVNQLLEAGCQVYAVDEVRLEHEAETRRMWLPRGQRTKLYVDRQKVSQSFFGALSLTNKKMRLYPIEGNQNTDRSLSPWNGCSVKPGPRRSRSCWTTPGSTTPKPSPACMSRASYWNASPRSSCRLMRPTTTRSNTSGTPPKPISRTFSEKPRTKLSELSLHTSPDAPSTTTSNTSPNPNQKPILFHDGHIQMGLH
>LR134442.1|VEH88969.1|303072_303654_-|CRISPR-associated-protein
MTARSWVEVGSVLRCTMRFTNLSREELGALIWLLTPENLVPASEKQKDPRAIGFLRMGMGKPFGLGVVETRIAKNGLRAVKNEELASDYVNLNGCLGSVTSPAEIAEFSLPNGNNLPKTPWVKALQRAAFGYSDGTEVRYMTLDENKENNKSDSKTGKPKDKRGLSPVDLAANTPTPIIIPRPNKQRRRHNSH
>LR134442.1|VEH88970.1|304419_305487_-|Transposase-and-inactivated-derivatives
MQIEVAPEETAVLIRWKKRTDNYVLVRMKAEAILYASRGVDVGIIAEMVERSEKTVREWLAEWQASRMCSVLTGHAGNQNAAKLTRTQKEDLKTVLALPPSRSGIDAEFWGVPALRDVVKILFDVEYESESSYQLLLRFCGLSFKLPDPFDKHRDEQAITRRMTEVKTQVNDLLGAGCEVYAIDEVRLEHEAETRRMWLPKGQRTKLYVDRQKVSQSFFGALSLTDKKVRLYPIEGNQNTEQIILALERLQRETKADRIAVVLDNARFHHAKALTSLYQPGQLLERITPVFLPPYAPDHNPVEHVWGTAKTNIANIQHQTPEQTFGAFASYITGRTFDYDFEHLPKPQPETDLVS
>LR134442.1|VEH88971.1|305522_306407_-|CRISPR-associated-protein
MGEYEPFHSAVNRIPVLRQPSQQMAGKGLLPKDLFSDGPATGHDHLAADRWSGSIDLEMTVRTPLVFGEQDEGEISLPMVDDKLVVPPTMVKGMISRAFEILTCSRFRVFGAVENTSGLRGSKNDHSQRLTYRADPAAANNLFPGRVCTTTDRSLAVEILDGKNSQFRSALIRDDVRKGHGDIVRDNHPEISTGPGNVVTQNQVLQRFRSLTPHGQWTRVRLTEWQKGKSGRHLMVTGVWNGEDLENFFTITGANSVRTLDVWGYPCRTSPDGKTSRELYDEKIYGRHETKSYF
>LR134442.1|VEH88972.1|306408_306930_-|Uncharacterised-protein
MMSSTEKAEPALLEGGRLASTSFPKDSLGEALARLTGAAPQWQGIAFTTAGARSVRAASAGALMTRLDGADHEVPLGTVYELRLWAVGQQALDGAKARELRWLNGSGSAEISVHEGAAGVGQDCWYRTNSYLQHSDIADLDMKPRMTGVEVFVQEDGYGNVVFADELMTGRWA
>LR134442.1|VEH88973.1|306926_308546_-|CRISPR-associated-RAMP-protein,-SSO1426-family
MRTRYELTVHLVTRSPLHSGGVDVPVDRSRSGSDREAEPRCFARDGHGNPVITGRSVKGALRAACERLTDDRIGGLGLLWGNQDRAAALTFHAIELDKTAVSTDPADAEGDEGRSPLARRTGIAVDRYWGTAGDTALFAHEYVPAGRSLELTITAQAGTPDGVSPVGGGAPQQAASPEQVEQLFGLILGLFKAGHVGFGGRRNAGWGRVELDDNRPWLLTRSELGSREGLLTWLAGGQNITERIRPADCSGDERVRINIGWDSPSGILVAEPREKKANEPTEEADRQPADGEPSSNETEPTRPLRCGPGKNDPLVLPGSSVRGALRSRASRIARTVLAARDMLGDQLDWSETGVHDQLANDPVLVRDLFGSTEHRGALTVLDTLAAGHVSGRRITHNAGDRWTGGAAEGALYSEEVHDVDWNSIELELDPGMLPEEADLNRRRAAWCLLGLTLAELAAGTLPLGSRGTRGLGQVRVTRISVEGGPGIVGEPWDLHDEGSEPLPEQILARLRQVQIEPNPAAGDDGWTGWSSYLVEGEDA
>LR134442.1|VEH88974.1|308542_310504_-|Uncharacterised-protein
MSRMSAPARQGALEFPVTIVFRSDWGVGTGTGIAGGVSSVVEKDANGRPVVRGTALAGVVREQAATAARALDEAPRGPWHDFVTALFGTPESPRLVSFTDATVPDDAPDVAVHEVVSLSIDEDTGTAKPEFLRFFERTAACTLHGRVSLVQTDLHGRPLVWDAEQRDGALLVLALAGLLVRGIGSNRSDGDGLCDVLIGDAMDAPRAREWCRARLGAWTGPAPTPPAADQRFTAPLLAPGRVAAAGDPGFVRADLELRLLTPVVSYEVPLFNEVRSLDFLRGTVLLPWVHRRLRRAFPDDEMVRDAVVAGDLLVSDATAMAGGVRGLPAPLVLTRPKTPDQRSAALPMRNPLFGASPPAAGDADGAQVPVRSGYVFPGFVPADIPSTGEEAPAGSLGAPALVGRQSTAHDPATGAASQGRLFLVRALPAGLRMGASVLVSQRLFEHLGERLHEAFPPREPVTAWLGSRRMGGSYGRVECRAGGFVPARPDRPAWDGDGATTLWFTSDVLARSGALGPGGTVSDLLAALGRGGADVELARAEGALAAGVRHRRVDSWSAADQQPRATRVAARAGSVLRVQPVPGADPGAVIAALARLSVTGFGELTAQGFGRFVLGHELLGRQDFGLTRLSQQHLLSGDGNDQKAGPTAEGGLR
>LR134442.1|VEH88975.1|310500_312261_-|Uncharacterised-protein
MYAVLLDVNSKQRFIFESPRLRESIGASHQITRLGCWVAHALSKTPDTDDRCEPDNHQWVSRSSGRVIVTVDDEAAARNVIRDVTLRALGEAPGMDVSGVYVKTGSEYFGADDLRALNEAAAEYALRRPPADGRFARMPFLAGAGDSALPAAPPLNQDDEPDEDKKEPYSLPSRHKRLTAYTARSELLDDLAPTGKDEKLARDPTRLERMLQPDNEADPQGGLSKVAIVHIDGNGVGAIMRDLAAAMRRVPHEDFTQAVKCTPGDADALRKFTLAVNENLDRAVRQACRLAWRDVADWAEKDAVTAGREYKAIPVVPVLLGGDDVTVITSGDYALPFAAAYLRHYEQATAADPLLRHLGDHPDGQAGPMTAAAGVAVVRFKFPFHLAYDLAERLVDEAKEVGKACSPSVSTLTYHVLLDTTVLDPEELLAAYERLSNRPFVLGSGAAAPSQGLAGHAAWPSVCERVRLFTGAISRNDDDRQDGFPRTRAARIRTMMSDAAQAELAGNTAERDRLLEQAENEWRDAEACFPDAKRLGGKQTMFDLMELTDLLPASYLKEPLGTASPPPSEPQRPSAADSSTGEEGQA
>LR134442.1|VEH88976.1|312278_313622_-|Uncharacterised-protein
MPTVTPKYDPRGPVFISYRHSDGMRIADRLAWLLRAAGIPVWRDEEDLTTGSIEARIEEAMGKGLSGGVLVVTPDVENSEIIQTVEATGLLNLLKNNPKFSLTIINALPYGDQLDLKAPPTVADQPPQHNQVSNGKQLDPEAPGRVLDISKRVAKKIVQFPATLDGLSESDQKKFITAYVKDHVTALAADTDAIELNIETRPAGSPNSSRAKHHFDMILPDSEDGTIRRQSLEDLQAVLGIVRGAIANQGASLLKVSGHAHLSVAFALGAQFPETLIGRAEATDNWNKVWPSEPAGTGEFVTEVASGGGSTSDPGELAVYVDLRKDASDKAFNDFLDTMQGRLRAWSHLRLAQPDWIDPRDGAAIARQIADHIRAICGAHGTPHVHLFLRCPFAVAFLIGRLVNTLTFTVYEYDKSTAHYVPALGVSTARAGGVIKEVLAPESTEQS

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Crispr_ID: LR134442_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_4

301436-301768

TypeIII

Consensus_repeat	Method
GATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CRT
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CRISPRCasFinder
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	PILER-CR

4 spacers

cas2,cas1,csb2gr5,csm3gr7,cas10

The CRISPR arrays of LR134442_4

>merge|LR134442|4|301436-301768|CRT,CRISPRCasFinder,PILER-CR
GGTTTCCCCATCTATTCAGATGGGGCTCCATTGAGACACGGGTCGAAGCCTCTTGCCTGGTTCTCTCCCACAGGATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACTTCTTCCCAGTACTCAGGGTTTCCGAGCAGGTCCTCCAGATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACTACTCATATGAGCCAACGGCGAACCAGAGCCTCCGCCAGATTTCCCCATCTATTCAGATGGGGCTCCATTGAGACCGCGGCATCTGAGATCAGGGTGACCAGCTCAGGATCAATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC

>LR134442|4|3|301436-301768|CRT
GGTTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	ACGGGTCGAAGCCTCTTGCCTGGTTCTCTCCCACAG
GATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TTCTTCCCAGTACTCAGGGTTTCCGAGCAGGTCCTCCA
GATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TACTCATATGAGCCAACGGCGAACCAGAGCCTCCGCCA
GATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CGCGGCATCTGAGATCAGGGTGACCAGCTCAGGATC
AATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC

>LR134442|4|4|301437-301768|CRISPRCasFinder
GTTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	ACGGGTCGAAGCCTCTTGCCTGGTTCTCTCCCACAGG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TTCTTCCCAGTACTCAGGGTTTCCGAGCAGGTCCTCCAG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	TACTCATATGAGCCAACGGCGAACCAGAGCCTCCGCCAG
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC	CGCGGCATCTGAGATCAGGGTGACCAGCTCAGGATCA
ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC

>LR134442|4|3|301438-301768|PILER-CR
TTTCCCCATCTATTCAGATGGGGCTCCATTGAGACA	CGGGTCGAAGCCTCTTGCCTGGTTCTCTCCCACAGGA
TTTCCCCATCTATTCAGATGGGGCTCCATTGAGACT	TCTTCCCAGTACTCAGGGTTTCCGAGCAGGTCCTCCAGA
TTTCCCCATCTATTCAGATGGGGCTCCATTGAGACT	ACTCATATGAGCCAACGGCGAACCAGAGCCTCCGCCAGA
TTTCCCCATCTATTCAGATGGGGCTCCATTGAGACC	GCGGCATCTGAGATCAGGGTGACCAGCTCAGGATCAA
TTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH88959.1\|288051_289377_+\|Bacillibactin-exporter	unknown	unknown	gnl\|CDD\|340888
LR134442.1\|VEH88958.1\|286178_287882_-\|Iron-import-ATP-binding/permease-protein-IrtA	unknown	unknown	gnl\|CDD\|224055
LR134442.1\|VEH88976.1\|312278_313622_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380122
LR134442.1\|VEH88961.1\|290375_291029_+\|Galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
LR134442.1\|VEH88970.1\|304419_305487_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|315923
LR134442.1\|VEH88972.1\|306408_306930_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH88960.1\|289448_290243_+\|Uncharacterized-isomerase-yddE	unknown	unknown	gnl\|CDD\|223461
LR134442.1\|VEH88969.1\|303072_303654_-\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
LR134442.1\|VEH88967.1\|299765_301325_-\|Transposase	unknown	unknown	gnl\|CDD\|227708
LR134442.1\|VEH88968.1\|301874_302969_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|225949
LR134442.1\|VEH88974.1\|308542_310504_-\|Uncharacterised-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187857
LR134442.1\|VEH88963.1\|294226_295027_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
LR134442.1\|VEH88973.1\|306926_308546_-\|CRISPR-associated-RAMP-protein,-SSO1426-family	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
LR134442.1\|VEH88975.1\|310500_312261_-\|Uncharacterised-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|187811
LR134442.1\|VEH88962.1\|291164_293993_+\|Calcium-transporting-ATPase	unknown	unknown	gnl\|CDD\|319781
LR134442.1\|VEH88964.1\|295259_296675_+\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LR134442.1\|VEH88971.1\|305522_306407_-\|CRISPR-associated-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
LR134442.1\|VEH88966.1\|298974_299520_+\|Transposase-DDE-domain	unknown	unknown	gnl\|CDD\|372577
LR134442.1\|VEH88977.1\|314604_315309_+\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|366010
LR134442.1\|VEH88965.1\|296680_296965_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH88959.1\|288051_289377_+\|Bacillibactin-exporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.60622e-26
LR134442.1\|VEH88958.1\|286178_287882_-\|Iron-import-ATP-binding/permease-protein-IrtA	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.64664e-88
LR134442.1\|VEH88976.1\|312278_313622_-\|Uncharacterised-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	2.42208e-21
LR134442.1\|VEH88961.1\|290375_291029_+\|Galactoside-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	1.52491e-59
LR134442.1\|VEH88970.1\|304419_305487_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.43608e-24
LR134442.1\|VEH88975.1\|310500_312261_-\|Uncharacterised-protein	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0.00133485
LR134442.1\|VEH88960.1\|289448_290243_+\|Uncharacterized-isomerase-yddE	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	7.04187e-65
LR134442.1\|VEH88969.1\|303072_303654_-\|CRISPR-associated-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	2.11652e-11
LR134442.1\|VEH88967.1\|299765_301325_-\|Transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	1.01477e-11
LR134442.1\|VEH88968.1\|301874_302969_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|225949	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.42747e-06
LR134442.1\|VEH88974.1\|308542_310504_-\|Uncharacterised-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	9.32293e-09
LR134442.1\|VEH88963.1\|294226_295027_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.97601e-06
LR134442.1\|VEH88973.1\|306926_308546_-\|CRISPR-associated-RAMP-protein,-SSO1426-family	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	4.71933e-12
LR134442.1\|VEH88962.1\|291164_293993_+\|Calcium-transporting-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
LR134442.1\|VEH88964.1\|295259_296675_+\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.70244e-109
LR134442.1\|VEH88971.1\|305522_306407_-\|CRISPR-associated-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.32656e-13
LR134442.1\|VEH88966.1\|298974_299520_+\|Transposase-DDE-domain	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	5.22515e-23
LR134442.1\|VEH88977.1\|314604_315309_+\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.60126e-40
LR134442.1\|VEH88965.1\|296680_296965_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.30384e-17

>LR134442.1|VEH88967.1|299765_301325_-|Transposase
MAYVRKVRTASGATAVQIAEYRDGRDRVLEHLGSAHTPEELSALVVAARRKLAPLQDELDFLSPAAASRSLTITDKRSTALWDSLRRVYTDLGFEVLADDVFAQLVLARVIKPTSKAGSIRELDSLGIPHAGLRSVFRCLARVQAEDYRSKISRLCFKNARVDGNLTLVLYDVTTLYFEAEREDELRKVGFSKERRVDPQIVVGLLTDRTGFPLELTCWEGSKAETLTMLPTVMGFLTRHGLGDLVVVADAGMLSATNLAALDEAGLKFIVGSRQVKAPIDLESHFHWHGDSFEDGQVIDTITVRHGNCREAVSDSRFRDEPVWDPEVHSGSWRAVWAYSRKRAVKDTRNLKKMTDRAIAVINGTKTVKSPRFVKTLQGKKILDEKALDRAHRLVGLKGYVTNMPATRISAAELIADYHELWLIEKSFRMSKSDLKARPIFHHTREAIEAHLTIVMAALAVSHRLQTITGKSVAKIIETLEPIHEMNVNIAGQTLHAHDQITPAAQTILDTLGLTWPPH
>LR134442.1|VEH88966.1|298974_299520_+|Transposase-DDE-domain
MDHAQTLIVDGTLVPCWDCKHTQGPYSGKHHTPGLNLHIASTLTGKLIWVGSTHDTKALQLIGFLDIFPDTPPLGDKGYIGLGMTTPIREQPRGGLTGWQKEYSKTINSLRAPVERAIAQVKTWRTLHTGYRRPLHTFPQTITAATALEFCKTVLNNPPGAVTRAATSNFPIYSDGAPLRP
>LR134442.1|VEH88965.1|296680_296965_+|CRISPR-associated-endoribonuclease-Cas2
MARRRYLIAYDIANPKRLRAVVKLMEDFGTRLQYSVFLCDLRRAELAVWRTALTDVVELKEDSVVVIDLGAVGATPIEVIGLARNLPSQGAVVV
>LR134442.1|VEH88964.1|295259_296675_+|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO
MGLSAVVDRVDHREGVSVPVDHKKGRPQADGQPWAADRAQVLVYAALLDAAGYTVDHAELFYAEDHVTVLVAWDDDAATELRGLVAAARELAESPVPPPPPIDSPRCPRCSLAGLCLPDETNALTERQAANKKRVLPRNPDERPLYVTEQGAYVSSRSGRIVVTKDGEELVGLRLLDISQLCVFGGVQISTQAITRILSTGAPVLWMSYGGWLNGWAQGSPSKHVQLLRRQVLSPDGTAIARQIISGKIRNQRTMLRRNAKSTIEPGVLGSLRELAGSAAAADSSSSLLGYEGTAARLYFENFTQMLSSQVELGQEFDTNGRTRRPPKDPINALLGLCYSLLVKDLVAVCLGVGLDPYIGVFHASRYGRPALALDLTEEFRPLVADSVVLNVMNNGEIGSEDFMRRGIGCQLTKQGRKKLIGAYERRLETEVTHPVFGYRISYRRCLEVQTRLLAAVLIGEIPEYKPFVTR
>LR134442.1|VEH88963.1|294226_295027_+|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MGPAMPDRSRGVASRRVSVIRWELRTRRPYPAWAGILATDRLRHLVVSGLDESTDPEDFLLTGHGAGPLTEHRFGYHAHAHWLWIEDDEHHVVGLALWCRPGLAAPQRDRVLSVRRLSRPDFNDAGFRPGDLSISGVGSAADALPELGSGLVSTAWASAVPYLLTLHTKRSRQWEDVVAQDVQRYLDHYYGVGAVRLITLQFGRAASNYRTSRWDPADSPSEAVWIERMEVDVPLTGPVCLGRHSHFGFGRFVPLADGLVTDPSLP
>LR134442.1|VEH88962.1|291164_293993_+|Calcium-transporting-ATPase
MTMTAPAAPQTPGGAPDEHPSVLSPEQVLARMGADAEQGLSPAEAASRLERHGPNELTGAPPVPAWRRFLAQFADPLVYLLLAAVGISVAAWVLEDAAGVPIEAVVIVAILLANAIIGFVQENRADDAVAALSTMTAATSTVLRGGRLDTIPSAEVVPGDILVLAEGDAVAADARLIQASALRIQESSLTGESEAVDKTPEALDAPAGIGDRHDMVHKGTDVVSGVGRAVVTATGMATEVGRIATLLDETPEEDTPLQREIASISKALGLVVIAIAVIVMGVMVLVNGVSSFHELVDVLLTGVSLAVAAVPEGLPAILTVVLATGVRALARRNAVMKTLHSVETLGSSSVICSDKTGTLTRNEMTLRTVVAAAGRAELTGTGYAPDGELVVTGDRDAVRAVLVGGALANDAQLHHDGGEWTIQGDPTEAAFLVACAKSGLDVELAGWRRRSEVPFSSERKMMSVLVERDGQRRVWSKGAPDVLLGRCTDERVGGVVQPLTETRRAELLGLIEDLSANGYRTLGVAARPGDGIGELTEGDEQRLAWIGVVGIIDPPRKEAAEAIGQAHRAGIRTIMITGDHPVTASRIAADLGISGDREPRALTGAQLDELGPGRLPGAVRDVDVYARVAPEHKLRIVEALQSDGSTVAMTGDGVNDAPALKRADIGVAMGITGTEVTKQAGRMILADDNYATIVAAVRQGRVIVDNIKKFLRYLLSSNMGEVCTVLFGVLLAGALGLSDPANPGATFVPLLVTQILWINLVTDSTPALAMGVDPEIDDVMARPPRRQTDRILDRAMWIRIIAVGAVMGLVTLAVYDFALPGGLFTGMLSGVPAGEQFAVARTMAFSTLVFAQLFNALNSRSADGSAFHRLFSNRWLWASLGLGVVLQVAVVEIGFLQSAFGTTSLDLAHWGVVVAASSLILVYEEIVKAVHRAIARARGKRR
>LR134442.1|VEH88961.1|290375_291029_+|Galactoside-O-acetyltransferase
MDERVDIETKYHGMLNSGELYDGANRELTAHQHTLTEKLNEFNATRDTPEGLAERDRLLREMLGTHGEGLRLSPPVTASYGLRHVHVGRNVVIGPNASIIDDADVVIGDDVVIGPNVTITTTEYPVSPRLRRHGLQFNKPVRIGDNVLVCAGAVIQAGVTVGENSIVRAGGVVIRDVPADSIVGGVPARVLRRIDEVEDRFYDHGRPIPQEILDKYQ
>LR134442.1|VEH88960.1|289448_290243_+|Uncharacterized-isomerase-yddE
MRFEYYVVDAFAERRFGGNPAGVCVLDEWIDDEVMQAVAAENRLSETAFVVRQPDGGYELRWFTPSCEIDLCGHATFGAAHVLFGFHEQEAERIDFHATMKGYELCCERDGDMVRMTFPRIVPSPFSCEDDIEAALGARPDQVLATERDLICVFGDEEAVRAMRPRFELVAGLSHGLSVYVTAPAADYDYVARAFWPKIGIDEDPVCGSMQSALVPYWSQRLGTRELVCFEPSEREGTVWCRDLEDAVSISGHGRLYLRGEIEV
>LR134442.1|VEH88959.1|288051_289377_+|Bacillibactin-exporter
MTDGEAGRKGRTVPDSRSTRTAESPSFASGDVQVGVVAFRCQRPIQVVLWIVFLVYLGQMSLNPVIAPLAREVGLAEWQIGVTISVAAVMVVLCSQFWGRRSQSWGSGRVLGIAMTLAALAMVAFTLVSWAGMRGTLPGGVLFALFVVLRGVCYGTAISAVLPTAQAHIAAVTAQGPERVRGMAGVGAAQSTAMVLGSAVGGLLAGIGLLLPIALVPVELMIGLLLVAWRLRRRSHAQLIAAPARISARDARVWPFLVAGFGMFTAFGFVQVIAGFLVQDRLGLDASRTGVVTGVVLLSAGLGMIVSQSVIVPRSRWLPVRLLRVGTLIAAVGFALMAAAGALWLLVVAVSLIGIGLGIATPGYTSGPSMLVGREEQGGLAGLLGAVSGLSYVLSPTASTVLYGISWLLPVLAGAAMMAAVWLFLLAHPRFREQVRAVPLA
>LR134442.1|VEH88958.1|286178_287882_-|Iron-import-ATP-binding/permease-protein-IrtA
MMSEISLLLRVMRPVRAHLVRAAIFETVGAAARLGLGFLAAGALAQITGAGSRSAAWWGFWLAAAAGSAGLSWLGRWRGGYWAHRADNLLQRLLRERAVDRIRAKPLSWVDEHGSVAVKRMVTEDVDALHHLTAHALGDLVSALVQTVIGLALLLVIAPLPTLVALVPAMIGLGLARSQRRAMPEQMRRYDEACERVDRAAVEFVQGIAPLKVFGGTERGLSRFRSAAADYASFVAGWARTVTPTMVAQQILLSAPPVWAVLALLGGSGRLEFAGLVTIAVVLPLLLSPVESLAFALQDLAGAVAAAERIDALIAEADDEPVSVPATPEPFGEDQACGLVLDEVSLRYGSTVGLERVSAVLPAGGLTVLLGHSGAGKSTLLEVIAGLGEPSSGSVHRSPHAVVSALWQRPFLLRASVLDNLRLARPDADEQDCRRAAVLAGIDERISALPQGYRTVLGQGVVLSGGERQRLCLARCLVARPSLLLLDEPASAVDTVSAHLMDRALAALRGRCTVVRADHRPSVALDADLVLVMDHGRVVEAGSAQELLASGGRFAALLTAGEAGGDS
>LR134442.1|VEH88968.1|301874_302969_+|Transposase-and-inactivated-derivatives
MQVEVTPEETAVLIRWKKRTDNYMLVRMKAEAILYASEGVGLGIIAKMVERSEKTVREWLSGWQSSRMCSVLTGHAGNQNAAKLTRTQKEDLKTVLAQPPSRSGIDAEFWDVPALRDVVKILFDVEYESESSYQLLLRFCGLSFKLPDPFDKHRDEQAITRRMAEVKAQVNQLLEAGCQVYAVDEVRLEHEAETRRMWLPRGQRTKLYVDRQKVSQSFFGALSLTNKKMRLYPIEGNQNTDRSLSPWNGCSVKPGPRRSRSCWTTPGSTTPKPSPACMSRASYWNASPRSSCRLMRPTTTRSNTSGTPPKPISRTFSEKPRTKLSELSLHTSPDAPSTTTSNTSPNPNQKPILFHDGHIQMGLH
>LR134442.1|VEH88969.1|303072_303654_-|CRISPR-associated-protein
MTARSWVEVGSVLRCTMRFTNLSREELGALIWLLTPENLVPASEKQKDPRAIGFLRMGMGKPFGLGVVETRIAKNGLRAVKNEELASDYVNLNGCLGSVTSPAEIAEFSLPNGNNLPKTPWVKALQRAAFGYSDGTEVRYMTLDENKENNKSDSKTGKPKDKRGLSPVDLAANTPTPIIIPRPNKQRRRHNSH
>LR134442.1|VEH88970.1|304419_305487_-|Transposase-and-inactivated-derivatives
MQIEVAPEETAVLIRWKKRTDNYVLVRMKAEAILYASRGVDVGIIAEMVERSEKTVREWLAEWQASRMCSVLTGHAGNQNAAKLTRTQKEDLKTVLALPPSRSGIDAEFWGVPALRDVVKILFDVEYESESSYQLLLRFCGLSFKLPDPFDKHRDEQAITRRMTEVKTQVNDLLGAGCEVYAIDEVRLEHEAETRRMWLPKGQRTKLYVDRQKVSQSFFGALSLTDKKVRLYPIEGNQNTEQIILALERLQRETKADRIAVVLDNARFHHAKALTSLYQPGQLLERITPVFLPPYAPDHNPVEHVWGTAKTNIANIQHQTPEQTFGAFASYITGRTFDYDFEHLPKPQPETDLVS
>LR134442.1|VEH88971.1|305522_306407_-|CRISPR-associated-protein
MGEYEPFHSAVNRIPVLRQPSQQMAGKGLLPKDLFSDGPATGHDHLAADRWSGSIDLEMTVRTPLVFGEQDEGEISLPMVDDKLVVPPTMVKGMISRAFEILTCSRFRVFGAVENTSGLRGSKNDHSQRLTYRADPAAANNLFPGRVCTTTDRSLAVEILDGKNSQFRSALIRDDVRKGHGDIVRDNHPEISTGPGNVVTQNQVLQRFRSLTPHGQWTRVRLTEWQKGKSGRHLMVTGVWNGEDLENFFTITGANSVRTLDVWGYPCRTSPDGKTSRELYDEKIYGRHETKSYF
>LR134442.1|VEH88972.1|306408_306930_-|Uncharacterised-protein
MMSSTEKAEPALLEGGRLASTSFPKDSLGEALARLTGAAPQWQGIAFTTAGARSVRAASAGALMTRLDGADHEVPLGTVYELRLWAVGQQALDGAKARELRWLNGSGSAEISVHEGAAGVGQDCWYRTNSYLQHSDIADLDMKPRMTGVEVFVQEDGYGNVVFADELMTGRWA
>LR134442.1|VEH88973.1|306926_308546_-|CRISPR-associated-RAMP-protein,-SSO1426-family
MRTRYELTVHLVTRSPLHSGGVDVPVDRSRSGSDREAEPRCFARDGHGNPVITGRSVKGALRAACERLTDDRIGGLGLLWGNQDRAAALTFHAIELDKTAVSTDPADAEGDEGRSPLARRTGIAVDRYWGTAGDTALFAHEYVPAGRSLELTITAQAGTPDGVSPVGGGAPQQAASPEQVEQLFGLILGLFKAGHVGFGGRRNAGWGRVELDDNRPWLLTRSELGSREGLLTWLAGGQNITERIRPADCSGDERVRINIGWDSPSGILVAEPREKKANEPTEEADRQPADGEPSSNETEPTRPLRCGPGKNDPLVLPGSSVRGALRSRASRIARTVLAARDMLGDQLDWSETGVHDQLANDPVLVRDLFGSTEHRGALTVLDTLAAGHVSGRRITHNAGDRWTGGAAEGALYSEEVHDVDWNSIELELDPGMLPEEADLNRRRAAWCLLGLTLAELAAGTLPLGSRGTRGLGQVRVTRISVEGGPGIVGEPWDLHDEGSEPLPEQILARLRQVQIEPNPAAGDDGWTGWSSYLVEGEDA
>LR134442.1|VEH88974.1|308542_310504_-|Uncharacterised-protein
MSRMSAPARQGALEFPVTIVFRSDWGVGTGTGIAGGVSSVVEKDANGRPVVRGTALAGVVREQAATAARALDEAPRGPWHDFVTALFGTPESPRLVSFTDATVPDDAPDVAVHEVVSLSIDEDTGTAKPEFLRFFERTAACTLHGRVSLVQTDLHGRPLVWDAEQRDGALLVLALAGLLVRGIGSNRSDGDGLCDVLIGDAMDAPRAREWCRARLGAWTGPAPTPPAADQRFTAPLLAPGRVAAAGDPGFVRADLELRLLTPVVSYEVPLFNEVRSLDFLRGTVLLPWVHRRLRRAFPDDEMVRDAVVAGDLLVSDATAMAGGVRGLPAPLVLTRPKTPDQRSAALPMRNPLFGASPPAAGDADGAQVPVRSGYVFPGFVPADIPSTGEEAPAGSLGAPALVGRQSTAHDPATGAASQGRLFLVRALPAGLRMGASVLVSQRLFEHLGERLHEAFPPREPVTAWLGSRRMGGSYGRVECRAGGFVPARPDRPAWDGDGATTLWFTSDVLARSGALGPGGTVSDLLAALGRGGADVELARAEGALAAGVRHRRVDSWSAADQQPRATRVAARAGSVLRVQPVPGADPGAVIAALARLSVTGFGELTAQGFGRFVLGHELLGRQDFGLTRLSQQHLLSGDGNDQKAGPTAEGGLR
>LR134442.1|VEH88975.1|310500_312261_-|Uncharacterised-protein
MYAVLLDVNSKQRFIFESPRLRESIGASHQITRLGCWVAHALSKTPDTDDRCEPDNHQWVSRSSGRVIVTVDDEAAARNVIRDVTLRALGEAPGMDVSGVYVKTGSEYFGADDLRALNEAAAEYALRRPPADGRFARMPFLAGAGDSALPAAPPLNQDDEPDEDKKEPYSLPSRHKRLTAYTARSELLDDLAPTGKDEKLARDPTRLERMLQPDNEADPQGGLSKVAIVHIDGNGVGAIMRDLAAAMRRVPHEDFTQAVKCTPGDADALRKFTLAVNENLDRAVRQACRLAWRDVADWAEKDAVTAGREYKAIPVVPVLLGGDDVTVITSGDYALPFAAAYLRHYEQATAADPLLRHLGDHPDGQAGPMTAAAGVAVVRFKFPFHLAYDLAERLVDEAKEVGKACSPSVSTLTYHVLLDTTVLDPEELLAAYERLSNRPFVLGSGAAAPSQGLAGHAAWPSVCERVRLFTGAISRNDDDRQDGFPRTRAARIRTMMSDAAQAELAGNTAERDRLLEQAENEWRDAEACFPDAKRLGGKQTMFDLMELTDLLPASYLKEPLGTASPPPSEPQRPSAADSSTGEEGQA
>LR134442.1|VEH88976.1|312278_313622_-|Uncharacterised-protein
MPTVTPKYDPRGPVFISYRHSDGMRIADRLAWLLRAAGIPVWRDEEDLTTGSIEARIEEAMGKGLSGGVLVVTPDVENSEIIQTVEATGLLNLLKNNPKFSLTIINALPYGDQLDLKAPPTVADQPPQHNQVSNGKQLDPEAPGRVLDISKRVAKKIVQFPATLDGLSESDQKKFITAYVKDHVTALAADTDAIELNIETRPAGSPNSSRAKHHFDMILPDSEDGTIRRQSLEDLQAVLGIVRGAIANQGASLLKVSGHAHLSVAFALGAQFPETLIGRAEATDNWNKVWPSEPAGTGEFVTEVASGGGSTSDPGELAVYVDLRKDASDKAFNDFLDTMQGRLRAWSHLRLAQPDWIDPRDGAAIARQIADHIRAICGAHGTPHVHLFLRCPFAVAFLIGRLVNTLTFTVYEYDKSTAHYVPALGVSTARAGGVIKEVLAPESTEQS
>LR134442.1|VEH88977.1|314604_315309_+|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MNEIAAGVVEIYLVRHGQTWFNKRDRVQGWCDSPLTEAGHELAAALGRGLAAGGIVLDAAYSGDMARHHETAQDILDAMGSPLPVTQLKALREMSFGGWEGGLNTDMWRACWDNLGVSTDEEAFAKGLTLVDVYNGISICNPDPDYPTEGTAAVADRAVAVLEDIADAEAGLREHSRVLVVTSGITIVCLLTALGFPPRDRVRNGAVALLRRDASGWTAVRINDMSWAENGRAT

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Crispr_ID: LR134442_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_5

694718-694810

Orphan

Consensus_repeat	Method
GCGGCGCCGGCCACCGGCCCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134442_5

>merge|LR134442|5|694718-694810|CRISPRCasFinder
GCGGCGCCGGCCACCGGCCCCTGAGCCCGGGCTTGGCGTGGCTCGGATCCAGTGCCCGCCTGACAATGCCGCGGCGCCGGCCACCGGCTCCTG

>LR134442|5|5|694718-694810|CRISPRCasFinder
GCGGCGCCGGCCACCGGCCCCTG	AGCCCGGGCTTGGCGTGGCTCGGATCCAGTGCCCGCCTGACAATGCC
GCGGCGCCGGCCACCGGCTCCTG

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH89498.1\|700664_702068_-\|FtsX-like-permease-family	unknown	unknown	gnl\|CDD\|223650
LR134442.1\|VEH89474.1\|689401_690211_-\|Short-chain-Z-isoprenyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|237825
LR134442.1\|VEH89490.1\|696369_697611_+\|Probable-M18-family-aminopeptidase-2	unknown	unknown	gnl\|CDD\|235073
LR134442.1\|VEH89476.1\|690383_691025_+\|hemolysin	unknown	unknown	gnl\|CDD\|224191
LR134442.1\|VEH89488.1\|694813_696130_-\|DNA-recombination-protein-rmuC	unknown	unknown	gnl\|CDD\|376878
LR134442.1\|VEH89492.1\|697745_697961_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH89480.1\|691511_691760_-\|Exodeoxyribonuclease-7-small-subunit	unknown	unknown	gnl\|CDD\|179195
LR134442.1\|VEH89471.1\|687594_688095_-\|Transcript-cleavage-factor-greA	unknown	unknown	gnl\|CDD\|234693
LR134442.1\|VEH89500.1\|702133_703525_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|376574
LR134442.1\|VEH89506.1\|705980_706997_+\|Sensor-histidine-kinase-desK	unknown	unknown	gnl\|CDD\|226951
LR134442.1\|VEH89469.1\|687066_687255_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH89472.1\|688164_689100_+\|1D-myo-inositol-2-acetamido-2-deoxy-alpha-D-glucopyranoside-deacetylase	unknown	unknown	gnl\|CDD\|132487
LR134442.1\|VEH89494.1\|698144_698966_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH89496.1\|698822_700625_-\|Protease-2	unknown	unknown	gnl\|CDD\|224684
LR134442.1\|VEH89482.1\|691855_693121_-\|Exodeoxyribonuclease-7-large-subunit	unknown	unknown	gnl\|CDD\|272979
LR134442.1\|VEH89504.1\|705002_705821_-\|Transposase-DDE-domain	unknown	unknown	gnl\|CDD\|372577
LR134442.1\|VEH89467.1\|685965_686973_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH89478.1\|691184_691505_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH89502.1\|703695_704526_-\|insertion-element-IS2-transposase-InsD	unknown	unknown	gnl\|CDD\|222853
LR134442.1\|VEH89484.1\|693300_693621_-\|luciferase-family-oxidoreductase,-group-1	unknown	unknown	gnl\|CDD\|274646

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH89474.1\|689401_690211_-\|Short-chain-Z-isoprenyl-diphosphate-synthase	gnl\|CDD\|237825	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional.	3.05143e-110
LR134442.1\|VEH89482.1\|691855_693121_-\|Exodeoxyribonuclease-7-large-subunit	gnl\|CDD\|272979	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. [DNA metabolism, Degradation of DNA].	3.85153e-144
LR134442.1\|VEH89476.1\|690383_691025_+\|hemolysin	gnl\|CDD\|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	6.46694e-46
LR134442.1\|VEH89488.1\|694813_696130_-\|DNA-recombination-protein-rmuC	gnl\|CDD\|376878	pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.	7.40535e-104
LR134442.1\|VEH89480.1\|691511_691760_-\|Exodeoxyribonuclease-7-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	6.01469e-15
LR134442.1\|VEH89471.1\|687594_688095_-\|Transcript-cleavage-factor-greA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	2.50806e-56
LR134442.1\|VEH89500.1\|702133_703525_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	5.28161e-52
LR134442.1\|VEH89506.1\|705980_706997_+\|Sensor-histidine-kinase-desK	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.61918e-36
LR134442.1\|VEH89472.1\|688164_689100_+\|1D-myo-inositol-2-acetamido-2-deoxy-alpha-D-glucopyranoside-deacetylase	gnl\|CDD\|132487	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme. [Cellular processes, Detoxification].	5.19172e-153
LR134442.1\|VEH89496.1\|698822_700625_-\|Protease-2	gnl\|CDD\|224684	COG1770, PtrB, Protease II [Amino acid transport and metabolism].	1.29129e-42
LR134442.1\|VEH89498.1\|700664_702068_-\|FtsX-like-permease-family	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	7.82208e-07
LR134442.1\|VEH89504.1\|705002_705821_-\|Transposase-DDE-domain	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.97368e-24
LR134442.1\|VEH89502.1\|703695_704526_-\|insertion-element-IS2-transposase-InsD	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.24994e-75
LR134442.1\|VEH89484.1\|693300_693621_-\|luciferase-family-oxidoreductase,-group-1	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	7.76786e-16
LR134442.1\|VEH89490.1\|696369_697611_+\|Probable-M18-family-aminopeptidase-2	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0

>LR134442.1|VEH89484.1|693300_693621_-|luciferase-family-oxidoreductase,-group-1
MPAPTDGAGAQAQGRSDTRLSALDRLPLFLGRTEAGTLHDAARLARGVEELGFERFWVAEHHNAPYFLSSAPDTVMTQSAGPDLAHPGRQRPHIFLARDGAPIVGT
>LR134442.1|VEH89482.1|691855_693121_-|Exodeoxyribonuclease-7-large-subunit
MEGMPKASTTQGPRNSPETAQPLGQVVGMLKGWVERCGWIWVEAQVIELRRRANYSVQFLTLRDTSQEISAQATATSAVLDAAGPITEGTTVLACLRPRVWNKTARLSFECSVMQIAGEGRLLAELEQRKRALQAEGLFEPARKKPLPFVPACIGLVTGADSAAERDVLTNTLRRWPSARFEIRHALMQGPRSAAEVASALAELDADPRIDLIVIARGGGSLEDLLPFSDEGLVRAVAAAHTPVVSAIGHEPDTPILDLVADLRASTPTDAAKRIVPDAAAEQQYLTELLGRARTAITARVDSESHELGRLTSHPVLRDPVSALEGHAQQLQMARFRLRTMIDRIVSDEEQAVSHALDRVRAMSPKATLERGYAIVADSDNASVTSVNDAEPGEQLMVFLSDGRLLVEVDDAIPGRPGGEP
>LR134442.1|VEH89480.1|691511_691760_-|Exodeoxyribonuclease-7-small-subunit
MADEKLSYEQARAELTEVVAKLESGGVPLAESMQLWKRGEELAAHCQAELDGARRLIEEARRCTPASVPDAGEQQNEDAPGR
>LR134442.1|VEH89478.1|691184_691505_+|Uncharacterised-protein
MATNGEEPRETTADSADEPVDWRHPKPEQGAEKVPDGLIWHNPGFVPQTRRPVSTRKLDEDLERHLEEDSAQRATVDEEITEHICLDETRWADSADDVEPDKEILD
>LR134442.1|VEH89476.1|690383_691025_+|hemolysin
MTPGSPKPRLRGWLHAVTAPLLLLAGLTLIVLTHSMAGRVGEAIYLLTGLMLFGNSAVYHRGRWPERVDTVLRRFDHSNIAIFIAGTYTPLAIMLLRGGSRVTLLSIIWGCAVLEVVCRNVWMGAPRVLYTVLYIVMGWTALFWLAQFWWAGGPAIVWLLLAGGLCYTAGAVCYALKKPNPWPEWFGFHEFFHTGTVLGAVCHLVAIWMAANR
>LR134442.1|VEH89474.1|689401_690211_-|Short-chain-Z-isoprenyl-diphosphate-synthase
MVHLNMVNRAIDRLSPEGLIYTAYQNRLRDGLAPNSLPRHVAVLADGNRRWARLNAPGRPLEVGYQAGADKLRDFVGWCDEIGVGTVTLWVLSTENLQRSADDELAPLMEVITKLTDDLAADLRHRVMTVGDLALLPGSIAERLRAAERASAGHTGTQVNMAVAYGGRHELRDAFRSLLAAEAERGTTLGELANTLEVDQISEHLYTRGQPDPDLLIRTSGEQRLSGFLPWQSAHSELYFCEALWPDFRKIDFFRALRSYQQRERRFGK
>LR134442.1|VEH89472.1|688164_689100_+|1D-myo-inositol-2-acetamido-2-deoxy-alpha-D-glucopyranoside-deacetylase
MKGMSVPVAQPGAGANLRLLNVHAHPDDESSKGAATTLKYVAEGARVMVATCTGGERGSVLNPKMDRPEIWENLTEVRRHEMETARAILGVEHHSLGYIDSGLPEDPTEQLPEGCFGLTDPVEAAVPLVQIIRAFRPQVMTTYDENGGYPHPDHIQCHRVSVAAFRLAADPSALPEAGPAWQVSKLYYQVGFHRARFAALDDAMDEAGLGRPYADRLAGWHNHDYEMRVTTRVPCGEYFDRSDDALRAHASQIDPDGFWFAVPTEIRRRAWPTEDYQLVYSAVPTRMPERDLFAGLRTGEKAPDPADTWII
>LR134442.1|VEH89471.1|687594_688095_-|Transcript-cleavage-factor-greA
MTDKQTIWITQDAYDKLSEELDHLKDEGRTEIAGKIGAAKAEGDLSENGGYHAAREEQGQMEARIRQLEQMLQNAEVGVAQAAPEKVVAGTTVTIAYDGDPDDTDVFLLGSREMLGLDDSLDTQVYSPQSPLGAAVLDHAAGDEVSYETPNGKTVNVMIVKIESRA
>LR134442.1|VEH89469.1|687066_687255_-|Uncharacterised-protein
MLAAQLVPTTLAGHPFWSVPESKKVSTRTSFITNVALTGGLLTVALGPQRSRRARRRARKKG
>LR134442.1|VEH89467.1|685965_686973_+|Uncharacterised-protein
MCGGSVGYRREALYIDVMSDSPKLDAILAELANGVIDTAEASRRIAALNQRSDEPAALTGAEGLDPIPELTGSGGIRSVTITATGQRVRVIGDEAVSTATVSGQHTMRRNADGLVITATGRLGPSIRGFSPINPPRTASDLKQLGLGPALEVRVNPHIQVNAQLSGGSLQSQDVPHWGRVRVSAGVTHLRGVAQLNDGLFQAGTATINGPISLGLNTLRVESGSLAVELTERADVGLSATSQLGVVRWPGEKGNRFDEYLVGRGLARMELSGVMSRIVVRDLVAFPEEADRPTAGDRLRGGARVVVTKVREVQAARASGVEDAAGSEGPSGDEKG
>LR134442.1|VEH89488.1|694813_696130_-|DNA-recombination-protein-rmuC
MADARLAVMDATTLILALVLVAVGLAIGFLLGRSQARSQAGGQQAELARAKAERDASLARLEALTNDRASMAHEFQRLSATAAEQQAATVDRTAKARFDQTRVLLEPISRSLQAMNDRLLQVERDRAQGAADLRRQVATVASSSEALRKETAALVTALRQPQVRGAWGETQLKRVVEIAGLVERCDFDTQVAVSTEDGGLRPDLRVNMADGKVIFVDAKTPLGNFIDAFATDDPEQRTALLGQYVKNVTGHINQLGAKNYWRLDAGSPEMVVLFLPSDALLQVALDQRPDLHEYAAGHSIFLASPSILIPMLRAVQHGWKQAAFTESAQEVAALGSELYQRLATMSGHLDKLGRSLSGAVEAYNRTVGSLEQRVLVSARRISELQLAEGSLEAPRAVQASPRVLAAPELVTGEPADADDPSGAAGVATSTVPGQGKGA
>LR134442.1|VEH89490.1|696369_697611_+|Probable-M18-family-aminopeptidase-2
MPGFAEFISASPTSYHAAATMAEGLAGAGFERLDERRRWGNVAGRRFFVRGGALVAWVAPEQPAPDAGVRIVGTHTDSPALKLKPNPSFTRAGWRQANVEIYGGPLINSWLDRELGLAGRLVTLDGTEHLVRTGPVLRVSQIAPHFDRSVNERLTIDRQYELMPSYGLGEGPDIAEWLCAQAGVPAGEVAFGDIHAYPTQAPAVFGVDGEFFASSRLDNLSSTYPAYRALLETRPGRDIALFVAFDHEEVGSGTSSGAAGPLLSDALVRIADGYGLRGDAYQALLARSSCVSADAAHAVNPNHVGKYDPVVQPAMNQGPALKANAQQRYASDAVSAVLWERACRAAAVPHQVFVSNNDVACGTTIGPFTAQRLGIATVDVGVPILSMHSTREMCGTSDPGHLCAALTAYWAGA
>LR134442.1|VEH89492.1|697745_697961_+|Uncharacterised-protein
MSRIRVGSGMFGRSFAQAVAASKMGDELLLEEGVYTLGESIQLRDLRLTGTGDPSRTVINSTSPAEQRPPI
>LR134442.1|VEH89494.1|698144_698966_+|Uncharacterised-protein
MQVDGLGLRGADGLLEIWCEESLIGIGAVDLNDDQRPYILRRGAGRFQVPDGVFEVVNEDESAEAAQSALLTELHWSVFDAHRFKDVILPRAARGATITMDAGEYFLDDCENETVSLACTLVGASPGRTVIHGTLAPYDSGELRLRDLTVRSASGCNCVVADSGSVALSNVVLEQFGEPMNDPALSAVDVVVTMKNSRVAAAPRSIIERSTNHFSPSPSRLGLITGSASAGRCACNRVRPLNCSYGFVPFGRCPEDIEHPSVSERVLIVCGFG
>LR134442.1|VEH89496.1|698822_700625_-|Protease-2
MISPSTCAQSKHSGLKRRNHHRCHTSASNPFGFKLPLVTGSSRRSGSAPRESLVLAADRSMFAVIGDIDGDEHFSMRIYIAAANGVELVHEEAPVSPRVRAYGNGILWIRRDGSLRPNQLLWWCPGSSRPTVLLDEPDSTRRLELRSVTDNMAILASRGSGSTRHWIISGDDGSIPTCRLLIHRVSDADVAIWKQTVLILDRPNGLVWDESHDRVFAETPPGFSAEHLQPSSDALLVTGRADGRQTIWLPAHGPQAVWTAPPAGTMLPAFDSATEKLMLLASSPVHQPQVVPAEVGTRLSLEPTGRASTLCLDAESDDGTMIPITLFLPPGEQTHPLVVHVYGAYGISLEGPFDPFADDLLARGVAIAYCHIRGGGEFGPQWHRQAAGEYRYRTVDDLLACVARLRALPAITADRIVVTAASAGGMTAAAACLRQPTWLRGLHLVHPFIDPLTTLMNPASNLASTDRAEYGDPRHDPGIRDLLQRLSPMEGIQGLPAQSRPLPRAWIRAAERDARADNDAIHRFSQHYRDASVSRHPGHIIQRITPGGHLAGDSTEATDDENTLAHAWMLDVLGAPSEWNKPIGTVKRSDSVTCAAPGAS
>LR134442.1|VEH89498.1|700664_702068_-|FtsX-like-permease-family
MRRYVMRMFTDQWRQWAPAIAVIAVIATMIGLCVHQFAWTSTPQFRDAVASASVPLAEFQILSVTIYMVIALVSWVALTVVGRASVQATRHCYALWLLLGASPRAVFLFAILVLVIVSLCGAILGALASTLLGSWAIPAFNTEVPASVDLPGFTIAPWAPVAIVIVSVVTAMIGGLMPARQASRIQPSVALRTFHQSGRHTISTVFRGIGGFIFLAVAAALVVASSFASQLGSTGPGPMFNLAVNAGDSALIAVYLLCPEIVRFIFWLLHKLFASTGLVVPALGTRAAAARAHASTTTIAPLAAGLGGIGLLLCAVNSVAAMTQILQPGTPTNLTDVWTIVAVVAVSMLATSAAVVALSARGRGREIALVQALGMHAGQVRILIVAESFAMSLAAAVTAVVPVVTGGLVCAFVSAAALDGASVVVWPLPSMLLGLLASWLLLLTILAIPTIRPLRDGPGAQLREQEI
>LR134442.1|VEH89500.1|702133_703525_-|Transposase-and-inactivated-derivatives
MDNATFTTPDLTWFCRLDDLGLTVTGQHLGPGRATLLCRPTLLDQWCHRCGGHGLVRDTIVRELTHVPFGWRPTTLRIRLRRYQCRECGHVWRQDLTSAARQRSSLSNGALRWALEALVVNHLSMSRIAAALGVAWNTANDAVLAEGKRVLIEEPGRLDDVAVVGVDEHVWRHTRRGDKYVTVIIDLTPVSTGTGPSRLLAMVEGRSKQAFKAWLADQSQAWRDGIRIVAMDGFTGFKTAAAEEISKATTVMDPFHVIRLAQDALDLCRRRVQVELHGTRGRKHHPLYQARRTLHTGADLLTDKQQRRLAALFADDRHVEVEATWGIYQTMITAYRTSTRAEGKKTMARLIDSVGSAVPTSLVEVCKLGRTLTKRRKGHPRVLRPPRLQQRPHRSDQRTPRTPPRHRPRLPQPHPLHHPKPPRNRRIQTTPTPWIVKSRHGHPRSGGRSLRRHRHRDARRTHR
>LR134442.1|VEH89502.1|703695_704526_-|insertion-element-IS2-transposase-InsD
MCRWAKVSKSGYYAWRNRPKSSTTKRREDLTAIIVEFFDESEQTYGYRRIHAELARSGVKVSPDTVRKIMATEGLVACHPRKRVRTTTPAPDLPSRPDRLRRDFTATAPGMKWVGDITYVPTWQGFAYLAVVMDCFSKKIVGHAIAGHMRTELVTEALAMAVRNCPPTRGVTIFHSDRGSQYTSAEYTKFMTDHGILPSVGRTGSCFDNAAAESFNAILKKELVNRKVYPTRNHAIRDVTAWIELRYNHKRLHSAIDYRTPNQVDTEWRQQHRAAA
>LR134442.1|VEH89504.1|705002_705821_-|Transposase-DDE-domain
MYHTTGFSPAAMAALHQILTHNYPRLPQTTGRPPAMSQSEEIRATLVYHRRNRTQTELAESFGVCQSSICRAISRWTPRIAEALEDFIPTVEDLDPSHTLIVDGTLVTCWNWKNQPALYSGKHHHTGLNLQVACDLTGRLAWVSDPTPGATHDTKALRLTGLLEHFPNTPPVADKGYTGLGMITPERKPVHGELTENQKQYNRTINKLRAPVERAIPQPQNLANTPHRLPQTHPHLPTNHHNSHRTRILQKQFCITLRDRRGRCAGEGPRGC
>LR134442.1|VEH89506.1|705980_706997_+|Sensor-histidine-kinase-desK
MLAVLLATPIAVFGTLNFTIPVLLLVVAFAVVDVSLRAGIHATVWISCVGFALHVFGSLTPWDAFPVGATQGLINVVPVAVLLCFGIALGLLLRSFEKRRHDDQKVINRLRHATEMEKELLLSEERARSARELHDGLGHRLTLVSMSLELAERMRGIDVDQAWEEIHTAKDTTSDALAEMRMWVRALNPVRDSEARGLAALELIAESFRGTGLTVDVSGDEASDRELTSDDEVALLIYRAVQEGLTNALRHSRARTVRIFLAVKERRMELAVINDFGSAATVGQPELVPDFGFGLRGISDRAAVRGGSVHACRIDGEFHLDVVVPLGGSGGTDRKETT

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Crispr_ID: LR134442_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_6

800976-801062

Orphan

Consensus_repeat	Method
CGAGGACCACCGTTCACAGGGGTGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134442_6

>merge|LR134442|6|800976-801062|CRISPRCasFinder
CGAGGACCACCGTTCACAGGGGTGGTTTCGACCAGGGCCAAAAAATTACGGAAGCCCCGACGAGGACCACCGTTCACAGGGGTGGTT

>LR134442|6|6|800976-801062|CRISPRCasFinder
CGAGGACCACCGTTCACAGGGGTGGTT	TCGACCAGGGCCAAAAAATTACGGAAGCCCCGA
CGAGGACCACCGTTCACAGGGGTGGTT

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH89666.1\|802772_803648_-\|Protein-of-uncharacterised-function-(DUF2510)	unknown	unknown	gnl\|CDD\|378480
LR134442.1\|VEH89661.1\|797533_798997_-\|Benzaldehyde-dehydrogenase-[NAD(+)]	unknown	unknown	gnl\|CDD\|143422
LR134442.1\|VEH89665.1\|801787_802699_-\|Methionine-aminopeptidase-2	unknown	unknown	gnl\|CDD\|235576
LR134442.1\|VEH89672.1\|811223_812069_+\|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG	unknown	unknown	gnl\|CDD\|181162
LR134442.1\|VEH89662.1\|798993_800124_-\|Aryl-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176239
LR134442.1\|VEH89664.1\|801123_801741_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH89671.1\|808260_811227_+\|Glutamate-ammonia-ligase-adenylyltransferase	unknown	unknown	gnl\|CDD\|237613
LR134442.1\|VEH89654.1\|790236_790440_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|319806
LR134442.1\|VEH89669.1\|806076_807174_+\|Threonine-synthase	unknown	unknown	gnl\|CDD\|107206
LR134442.1\|VEH89659.1\|794091_796470_+\|acidobacterial-duplicated-orphan-permease	unknown	unknown	gnl\|CDD\|226957
LR134442.1\|VEH89663.1\|800749_800959_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH89658.1\|793777_794095_+\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|213222
LR134442.1\|VEH89667.1\|803682_804561_-\|Protein-of-uncharacterised-function-(DUF2510)	unknown	unknown	gnl\|CDD\|378480
LR134442.1\|VEH89668.1\|804679_806044_+\|Probable-glutamine-synthetase-2	unknown	unknown	gnl\|CDD\|223252
LR134442.1\|VEH89673.1\|812093_812648_-\|Tetracycline-repressor-protein-class-E	unknown	unknown	gnl\|CDD\|172294
LR134442.1\|VEH89656.1\|791351_792287_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH89670.1\|807343_808081_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380033
LR134442.1\|VEH89660.1\|796488_797550_+\|Trans-aconitate-methyltransferase	unknown	unknown	gnl\|CDD\|379312
LR134442.1\|VEH89657.1\|792862_793381_+\|Heptaprenyl-diphosphate-synthase-component-2	unknown	unknown	gnl\|CDD\|376322
LR134442.1\|VEH89655.1\|790436_791324_+\|prenyltransferase	unknown	unknown	gnl\|CDD\|260130

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH89667.1\|803682_804561_-\|Protein-of-uncharacterised-function-(DUF2510)	gnl\|CDD\|378480	pfam10708, DUF2510, Protein of unknown function (DUF2510). This is family of proteins conserved in Actinobacteria. Many members are annotated as putative membrane proteins but this could not be confirmed.	1.62005e-10
LR134442.1\|VEH89661.1\|797533_798997_-\|Benzaldehyde-dehydrogenase-[NAD(+)]	gnl\|CDD\|143422	cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.	6.5807e-174
LR134442.1\|VEH89665.1\|801787_802699_-\|Methionine-aminopeptidase-2	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	4.1224e-132
LR134442.1\|VEH89660.1\|796488_797550_+\|Trans-aconitate-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.93112e-11
LR134442.1\|VEH89662.1\|798993_800124_-\|Aryl-alcohol-dehydrogenase	gnl\|CDD\|176239	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	3.54205e-109
LR134442.1\|VEH89671.1\|808260_811227_+\|Glutamate-ammonia-ligase-adenylyltransferase	gnl\|CDD\|237613	PRK14109, PRK14109, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
LR134442.1\|VEH89654.1\|790236_790440_+\|Uncharacterised-protein	gnl\|CDD\|319806	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases. This family includes the N-terminal domain of the Escherichia coli bifunctional enzyme histidinol-phosphate phosphatase/imidazole-glycerol-phosphate dehydratase, HisB. The N-terminal histidinol-phosphate phosphatase domain catalyzes the dephosphorylation of histidinol phosphate, the eight step of L-histidine biosynthesis. This family also includes Escherichia coli GmhB phosphatase which is highly specific for D-glycero-D-manno-heptose-1,7-bisphosphate, it removes the C(7)phosphate and not the C(1)phosphate, and this is the third essential step of lipopolysaccharide heptose biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	0.000425796
LR134442.1\|VEH89669.1\|806076_807174_+\|Threonine-synthase	gnl\|CDD\|107206	cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.	9.7803e-114
LR134442.1\|VEH89659.1\|794091_796470_+\|acidobacterial-duplicated-orphan-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	4.19402e-08
LR134442.1\|VEH89668.1\|804679_806044_+\|Probable-glutamine-synthetase-2	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	0
LR134442.1\|VEH89672.1\|811223_812069_+\|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG	gnl\|CDD\|181162	PRK07904, PRK07904, decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase.	1.12702e-77
LR134442.1\|VEH89673.1\|812093_812648_-\|Tetracycline-repressor-protein-class-E	gnl\|CDD\|172294	PRK13756, PRK13756, TetR family transcriptional regulator.	8.65539e-16
LR134442.1\|VEH89658.1\|793777_794095_+\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.85063e-46
LR134442.1\|VEH89670.1\|807343_808081_-\|Uncharacterised-protein	gnl\|CDD\|380033	pfam17844, SCP_3, Bacterial SCP ortholog. This domain is found in MSMEG_5817 gene product from M. smegmatis. It has been shown to be vital for mycobacterial survival within host macrophages. Crystal structure revealed a Rossmann-like fold alpha/beta two-layer sandwich forming a highly hydrophobic interface cavity and with high structural homology to the SCP family. Hence, it has been suggested that this domain may be involved in the interaction of apolar ligands through its hydrophobic cavity. Alanine-scanning mutagenesis of the hydrophobic cavity of MSMEG_5817 protein demonstrated that the conserved Val82 residue plays an important role in ligand binding.	5.11069e-31
LR134442.1\|VEH89657.1\|792862_793381_+\|Heptaprenyl-diphosphate-synthase-component-2	gnl\|CDD\|376322	pfam00348, polyprenyl_synt, Polyprenyl synthetase.	7.04296e-26
LR134442.1\|VEH89666.1\|802772_803648_-\|Protein-of-uncharacterised-function-(DUF2510)	gnl\|CDD\|378480	pfam10708, DUF2510, Protein of unknown function (DUF2510). This is family of proteins conserved in Actinobacteria. Many members are annotated as putative membrane proteins but this could not be confirmed.	2.60766e-10
LR134442.1\|VEH89655.1\|790436_791324_+\|prenyltransferase	gnl\|CDD\|260130	cd13967, PT_UbiA_5, UbiA family of prenyltransferases (PTases), Unknown subgroup. Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways. The function of this subgroup is unknown.	5.37431e-12

>LR134442.1|VEH89663.1|800749_800959_+|Uncharacterised-protein
MSRRRFTVTAERGRGAWWVTECAEVGAVSQVRRIDHAADDIREAVAWLSGLPPEDSFDIDIVQARPDER
>LR134442.1|VEH89662.1|798993_800124_-|Aryl-alcohol-dehydrogenase
MLIMAAVTYGRADLTWQAVELDPPGPGEVLVKLTASGICDTDRRVIDGTRHFALPGVVGHEGSGIVQEVGPGVSYLHPGEHVVLGWARCGDCPACTARATSYCEQTRRATEAGVRVGGPLSGQGAYRFLDGKQLGGHFFGQSSLASHTIVAASSLVAVDHRLPLAKIAPLGCGFSTAFHAVDDVIEPQPGTNVVVLGVGSVGSAAIIAASMAGAHVVAVDRKPAKLQLAAQLGADPLMIEDPAELPELLRSQLGHRPAAVVECTGNPQLAEAAIAAVGSRGVCVLIGGSRAGTTISLDHNRLVWGKRVQGVLGAGDINRTIGRLADLCRDGSFPLDKLVKVYPSDYLSQALADQSAGLVIKPVVLAPAAPAALDKP
>LR134442.1|VEH89661.1|797533_798997_-|Benzaldehyde-dehydrogenase-[NAD(+)]
MTRQYVVPAPQPDPRWTRSVFVAGWQPVTGELAVTSPFSRHQLATVGECSTHEVDQALGASLTAQRTWAAARQARIAVLSTAADNLRADGDELVAWLVHETGSTVAKARLEVNLVIAELQESVELAKLSLTQPQPGSKRQSTVHREPIGVVAVIAPFNFPAHLAVRAIAPALALGNTVVLKPHPCAAISGGLWLAGMFEVSGLPTGVLSVIPGDAEISEALVADPRVGQVTFTGSTAVGERIAEIAARRLTPTLLELGGNNALVVLPDADVELAASCGGFGSFYHQGQICMSTGRHLVHESQVDAYVQELTGYANRLKIGDPADPTNDLGPLINTKQLARVDDLVRRSIAAGAELVRGGTTAGLCYEPTVLIEPARRSPAWQEEIFGPVAVISPFSDDQDVAALVNEQGPGLVTSVLCADVTQGAELGAKITCGIVHVNEPTVDYQVGAPFGGWGASGNSTIGDQISNITNFTKTKWLTVRSTMVQR
>LR134442.1|VEH89660.1|796488_797550_+|Trans-aconitate-methyltransferase
MQRTLLTVVRCPSCGSKVELASPELGSSLIETGILNCLGCARSYAIVDSVPWMLAEDNLDRRSVKGFSFQWRIRQSGAGESPGVIYGYRIPQLVEWMSQSFFDHLDATTQQHWILDAGCGSAEKSAELAIRYPRHQVVAIDQSSTIGQTAARLSGITNLHFIRGDVLQPPLLTGAFSQVVSIGVLHHTRSTRTAFERIADLVGPAGGLLVWLYPREGEDSFWDGLYRQRDRHFAGLGSKLPKPLVMAWCRAYVKVFSNQIKSFLVYEHERNCQIFPPEIYPVFRNRAEMSRSAVFLSFDNVMPRYQFRHDRQEVASWYEAKGFCPPSTKYPGFFAARRGQSGDAALANVNAVP
>LR134442.1|VEH89659.1|794091_796470_+|acidobacterial-duplicated-orphan-permease
MIKIHNPAHVLPFSSLQKFALGSAWSMAGRLMVLIAVASMAFSILVGEYSAMSSITKARNNWYSEGHLADLELRFTPSPNQPAPRFDGLSGLAGSTSRQVLSGRTQLAETNDLALTVIFSDSVWAGTRLNILTPLKGTLLTRDDDSGALIDQSMAKYHSVDVGDSLEIEVGGATRTITVRGIVRDPEFLIAPLNPSLFVSAKGSMGVVYLSPSEASSVANSVVFDFESGQDLDAAREAVLNEAAAQNLTGAYAMKREEQFAYQYVEKNLDVFDVVIPLMVLVGALSAAFVSMFLSAQWIARERKGIAVLLVQGHQPAAVARAYVLPYMWLVGWTIIMGLLGSVLVGHAFLENFASSVGLPSVPFILDPVMIAIGCIGTLAVYGLGAALTFERIFRMTPRDAMTRTIDTGRSGRVRGVRLGALVPNTTARLSIRNVQRNPWVSVLTTLAIAIGFGLTAAYFLSYSSVIATSRSAVVGNEWDLTVDFAEPQSDAQAAALMSKAGVSEWTPTIKTAAQATNGSVIENLLIGGFDPKNTWHKVTLVEGSDISESDPDGVVLEAGLARRLALEPGDTFTIKAAGTEHEARVVGIMSSALPGEVRSTVVFTSSLTGSDLFSGVLVKVSPDKIPSTTNALNSESGVQQALNKDEIVKLIVASSDQITALLWLGALTSIVVALLFVAACLGYTILERRREYLLLGLLGFRNRTIRGTVVMEASLLGLSGIVIAFPVAWLVSRLLNERISDVWFNIDSQLSAQPFLMTFGPGLVLLPLAALPLAQWVLRASGSDNRERGIG
>LR134442.1|VEH89658.1|793777_794095_+|Lipoprotein-releasing-system-ATP-binding-protein-LolD
MRALEMLDAVGIAHLADNFPAQMSGGEQQRASIARAMVKQPPLILADEPTGALDHANAKQVLDCLTRLQQQTGTTLVVATHDPIVTSYATEIWEMGDGAIKVCDS
>LR134442.1|VEH89657.1|792862_793381_+|Heptaprenyl-diphosphate-synthase-component-2
MVHDPLEYLQSVVHRSTSYTYRMPFKIGASLANADDRAFSAYSRLGEEIGLAFQVIDDQLNVAPVTEEWGKTNAEDITAGKVTLQVLLALRRADRKRAAELVRILRANTTDQSELRSAVDIMRECGALTEAREIADKHLDACLRIVSDMDFLHSDDRELWCSFISYLSNRDR
>LR134442.1|VEH89656.1|791351_792287_+|Uncharacterised-protein
MDLTTAWPRARAAADAALELTVPQRRDDQWVVAYVDEPRFGWDWDGLERGFLAPVHEFNSQHPAGLRTLLLDLLLAGKEPYQRPVAQLIAAIECQYLSSIMLDMVTNAYDLPRQDESLPLPPPVWVTVAYNLRQLGVLLAYEGDLSRAPGTRLGEAFGKYLVRQGLARSVDLGAHQLSNELERKGLLDYLLSAEPSASFELVGLTAAAVIGQPQAGTLLASVCRHLGVALRLEAISRSVLDAIGEDPVVSTESWLPEMVLRVDADPAALAAEQLSLARSLAKHSLPGVDQAVLKFTRLVTPRLYATIGVKA
>LR134442.1|VEH89655.1|790436_791324_+|prenyltransferase
MTAIFGVRLRVTSEILLTNRFHAFVLPVILTSFWNQSMHLPLDWQYYVMITSSTVVAYVYNQITDRREDSVNYAGKGHFFASKHVAWPVCVGAGLVGASLALRAGWDFLFYSLIVNILMNFYSRPMPWPTLPGLSRIKQYRYVKNAFAALCWSVPLLVTPYVYVGSWPQWLQLLVMIVVTFGFDYLTELLWDVRDAKGDLRAQVITIANTYPIQIVHRIARVVIAITSLTYLMGLIAGVLAVPQGWLFLVMWTPYVWLFVDRYLNSDLKLPLSHRFVIVQAIIALSALVVQFVIG
>LR134442.1|VEH89654.1|790236_790440_+|Uncharacterised-protein
MITEYLGLRGDDLDTAVVIGDSLTEDAELAERAGCRALIIGTPEVTSCDLLNVARLDQALDILRGIE
>LR134442.1|VEH89664.1|801123_801741_+|Uncharacterised-protein
MEGMADQDPIGANELRPGYLVSLAVKTFLLVGVVLVVVCFTMLTGFSYSYQQQSAGGSLGDWSGWILERAFLDGLDPRLSAGELVGAALWTGMRTFGFFPLSLALMARHVSREIWAEPRHHIIRLVGLGMFVLALLNPDDLMRSALPYGLNIEAMTWGPALTVIGGCLDRQLFGAEKPAWQRDWAPASRGLPQSGWPQGGAQYPY
>LR134442.1|VEH89665.1|801787_802699_-|Methionine-aminopeptidase-2
MKPYPQSPKRSVPANIARPPYVGKMGPENYEGSDIQSDEIVERMRVAGRIAADAILVAASQIAPGVTTDHLDAVAHEFMCDHHAWPASLDYRGFPKSICTSVNEVICHGIPDTRPLEGGDIVKIDVTAYAEGVHGDNCATFYVGEVDEESKRLTEVTREAMYRAIKACKPGRSVSVIGRVIEKYARRFGYDVVREYTGHGVHTAFHSGLVIFHYDEPRYDRTMAPGMTLTIEPMLTIGSASTTQWDDGWTVLTQDGSRCAQFEQTLVITEQGAEILTLPSSGEPILGGDPAAIDLSAIGRPVA
>LR134442.1|VEH89666.1|802772_803648_-|Protein-of-uncharacterised-function-(DUF2510)
MPVPGWYPDPAGTPGSYRYWDGHTWSEVTTTDPATTPPPGTTPTTTSTTRSHKGPIIAIVAIIAIVAVIAAIALTRGGLNRHTDVPEDTNTAAPTGPVWDETSTPTPEDSSNQSSQRCPVTDGGTTTVQVNGSLTGGNLRVPTVEGWDESFKRLGWVADFHAIYDQIYAGWVADIAVGALLFEDGFTDLSTSARQTLECYASSGYYDGYTGQKDLIDEEATVDGHQAWHIRSEVYVQKESLPQVRGDVVDIYVVDVGSDDHLGVFISSINLGDADRMAKAQECMDQMKVVP
>LR134442.1|VEH89667.1|803682_804561_-|Protein-of-uncharacterised-function-(DUF2510)
MPVPGWYPDPAGTPGSYRYWDGHTWSEVTTTDPATTPPPGTTPTTTSTTRSHKGPIIAIVAIIAIVAVIAAIALTRGGLNRHTDVPEDTNTAAPTGPVWDETSTPTPEDSSNQSSQRCPVTTVTTESSQPAKGIAGGGLKAPDISGWQNTSSFYLDWVSDTHSLMDTVYVGWMSNVAVGALNFEDGFTDLSTSAHQTLECYASSGYYSGYTDHKNLVDEETTVDGHQAWHIQSEVYVQKESLPQVRGDVVDIYVVDVGSDDHLGVFISSVTIGDSDRDKKVRDCIAGLKVTS
>LR134442.1|VEH89668.1|804679_806044_+|Probable-glutamine-synthetase-2
MGGVRWQTWGMDRQTEFVLRTVEERNVKFIRLWFSDVQGFLKSVAMAPAELESAFDEGTGFDGSSIEGYARVYESDMIAHPDPSTFQLLPWRTHANTARMFCDITMPDGSPAMADPRQVLKRALGRAADMGFTFYCHPEIEFFLLEKLRQGEYEPRPLDNAGYFDHTTMDDGTDFRRDAVMMLEQMGISVEFSHHESAPGQHEIDLRYADALSMADNIMTFRVVVREIAAAQGIQASFLPKPFTDAAGSGMHTHMSLFEGDRNVFFDAADEVRLSRTGRRFVAGLLAHAREITAVTNQFVNSYKRLWGGGEAPAYICWGRNNRSALVRVPLFKPNKQSSARIEYRAIDSACNPYLTYALLLNAGLDGIERELPLPDEAEDDVWALSHKERHALGIAPLPRSLDEAIEAMESSELVAETLGEHVFDYFLRNKRAEYYEYAQQVTPWELERGIGRI
>LR134442.1|VEH89669.1|806076_807174_+|Threonine-synthase
MMFACAACGAREPAATREPRCACGGLWDLAYEHRPFSLGAVDRGEWSMFRYRAFMGLDDDTAWRSVTMGEGMTPIIDFDADLALKMDYLMPTLSFKDRGAAVLVAHCASIGVESVVQDSSGNAGHAVAAYCARAGIGCEIFVPEGTSPKKIDLISAAGATVNAVPGNRDHCAEVCRARVADEGVYYANHVYNPVFYEGTKTFAYEIYEQLGRVPANILVPVGNGTLFLGLVKGLEDLLRAGLIEAMPQIIAVQAQGCDPLLRAAEAGAAQPAAVTPEPTLAEGIAIGAPARGAQILARARRHGVRFIHAPEDEILRARAALAARGVHCEHTTAANLAAYWQYCRQWGPTPDCLTTMCGAGLKSDH
>LR134442.1|VEH89670.1|807343_808081_-|Uncharacterised-protein
MATRAEAAARRSASIYLTQLGALRDPAQAHGARALAELIWQAEVVGRAATSPLRATPMSLADHLAALEKDRPAREERINRLVADESPEQLAAHAGEAVGGCERALAGAGTGVVETGQGPVRLPDVIRAATIEARLLAERCGAGLDKAGAAQALRACAQALSERHPGRSIELRVPPVTAVQLGALTGGPTHHRGTPPNVVETDPDTFWALCTGTLDWPAAREQRLLRVSGVHATELEQMLPVIAPR
>LR134442.1|VEH89671.1|808260_811227_+|Glutamate-ammonia-ligase-adenylyltransferase
MAARRMTLAGILARRGFTGAAHAAEVLESLPVDPAGLIDELSATADPDLALTAFAELFGKDPELINEVMADQDWRRRLVAVIGFSQALGRHLSAHPQDVRVLAGEPERWTASRIRADLLTDIGLGELAGAGPGELARAVACEPEAADRLRLANKRHLVRIAGRDLSADEPRDVVNSIGSELADLADAIMGCALAIARGQVADQAKARLGVIALGKCGAQELNYLSDIDVLFVAEPADDSVPTSEATAVGNLIAAAMTRICSAHSSCGTIWQVDAALRPEGKKGPLTRTLSGHQAYYERWARNWEFQAMLKARPMAGHPELTAGFCRIVEPLVWQAGGRDDFMSEAQAMRRRVVDLIPAKDTETEIKLGAGGLRDIEFSVQLLQLVHGRVDERLRLRGTLPALRALAQHGYISRGDASELDRAYRFERVVEHRIQLFNLRRSHLMPPGDDDRRRIARSLGMREGEELWRAWRSTARDVEHRQRRIFYSPLLEAVSQLSDEELRLSPQAAQDRLKALGFADSRSALAHIEALTKGASRTADIQRQLMPAMLGWFAEGPNPDLGLLSFRQLSEAMGGTSWYMRALRDEGQMAESLAMILSSSRYVIKMIGYVPGSVQMLADSSQLAPRSRESLSETMSAAARRHDDTEEAIEALRTIRCRELTRLALGDALGLITTQNVGAGLSSVMGATIDVALAIIGREQTDPVPPIGVVAMGRWGGAELSYGSDADAMFIVPDGTSSEQIATATRVIARLRALLNAPGRGPALQIDADLRPEGKEGPMVRTLSGFLTYYERWSSTWEHQALVRADYGAGDREVVDALLDGITGLRYPAGGLRPDQVAEIRKLKARMERERIRRGTDPHRNLKLGPGGLSDVEWTVQLLQMQHAGAIEQLRTPTTMIALAALRETGLVDEHDAHVLGRAWRLASALRDHTMLVSGRSSDLLPSDPRDLAAIALQMHRDMKNASELIEDWERTSRRASNVVDRIFWERDA
>LR134442.1|VEH89672.1|811223_812069_+|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG
MRHPRLPQGAHRRHGAGRAVTDPSEQPRPDTEPGALVVFGGTSDIGLAIAAELLARTPRPVVLVCRAGAARVPSARRVVLDAGASRVRVVDLDVTDLDAHEAAVDEAFAEPVDRVILAFGVLGDQERAWQDADAAVNVFTVNATAAVSIGVLVAQRLRGQVWATGRRGRIIAISSVAAERVRRSNFVYGASKAGMDGFFTGLREALRPDGIGVLLVRPGFVRSAMTAGRRVALAVGPEQVGRAVAEADEAGRELVRVPAIFGPLMAVFTVMPSALARRLPW
>LR134442.1|VEH89673.1|812093_812648_-|Tetracycline-repressor-protein-class-E
MALTEKDVIDAALAILDEYGLADLTMRRLAGVLDVKPGALYWHVANKQTLLAKLVATILDGLEVPAGPWRQSLSAWADELRARLLAHRDSADLLASMRAIGMAATDLADGPAAALTAAGLSRARAGLGARTLVHLVIGHVNEEQQRAQLSPLAGGDETAALVADEQTDFRAGVQLLLDGIAAGR

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Crispr_ID: LR134442_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_8

2033787-2036277

Unclear

Consensus_repeat	Method
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	PILER-CR
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CRISPRCasFinder
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CRT

34 spacers

cas1,cas8u1,cas3,csb2gr5,csb1gr7

The CRISPR arrays of LR134442_8

>merge|LR134442|8|2033787-2036277|PILER-CR,CRISPRCasFinder,CRT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCTCGGCCTCGAGTACAACGCCTCCGAGGAGGCTTGGGCGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCAGAGTGACAGAACTCTCCCCCTCACCAGGGTGCCAAGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCTCTGCCGAGTTCGCCGGCGCGACGAGCCTTCCGGTGTCCGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCCTGTCCAAGCAGCTCGGGGTGACCACCGCCGACGTGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCCTCATGCCTGGCCGCACGGCCGGCGCCCCACCATCCGGTATTCCCAGTCCTAAGGACCGGGCTCCATTGAGGCTTCATCGAAGAATCCCCGGCAGGCGAACGGAGCTGTGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCTCAACCACTCTCGGGCGGTCTCCCTCCGGTGAGGGTGGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCCTGACCTCGTGAAGGAGATTGAAGCACACGATGCGACGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCGCCCGCTACTACCCGCAGCACCCGCTGGAGGGGCTGGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCACCATAGAGGTTTCGCAGTGTGCCCTGACCTGTGGCGGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCTCCAGGTCCGCGATCAAGTCTTCGATCTCGTCTGCGGGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCATGCCGGTGGGCGGCAGGCCGCGTTCACCGAACAGGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCATTTGGACGCCCACGGTGATGCGGCCCGGGCAGTAGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCACGAGCTAGGCCGTGAGGCGTCGATCGTGATCGGGAGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCACCGTCCCCCTACCCCGCAGCATCAGCCCGCTCCGGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCTCATCAACACCGTCTACAACAACGGCATCCGGCGCGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCATGGTGGTTCCGCTGCCGGTGGCGCCGCCGCTGGCGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCTCGACCGCGTAGGAGGCGGACTGTTCGGCGGCCCAGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCATGTGGCGGACGAAGTAATAGATGGCCGTCAACCACGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCAGCTCGCTCAACGCGAGGCATTGCCGCTTGTTGAGCGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCGGGTTACCCAACCGTCTTCTGTGAGGCGCAGGAGAGGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCGTTCATTCCTTCGAGCCAGTCGGTGACCAGCCCGGGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCGAGTCACTTGACAGCCTGCTTCTGAGCGGCTAGACGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCTTGTAGATCAGGTAGCCGGAGAGCTTACCGGCCCGCTGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCCCTTCGCTTGTTGTGTCCGCAGGACAATTCGGTGAGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCGTCACGATCATGGGCTGGGCCAAGTGGGTCGCCCTGGCGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCTGGTCATGGTTGTGCTCCATTACTTGATTACTTGAGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCAATACCATCCCAGTCGTTCTCATCGGGGATGGTGAGGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCCTCGATATCGGCAAGGACTCTGTCACATTGCAGGGCGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCTTGGTGCGGCGGTCCCCGTCGATGACCTCGATCTCGGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCCACAGCTCGTACGCCTGCGACAGCGGGTCGCCGGGCGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCGCTTCCTCCTCGTTGTAGCCCATCTGGGTCGCCGTCTGGGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCACGCCATGACGGAAGACAGGATCACTGTCACCTGCGGCGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGCCAGCCGTACGCGTTGCCCTCCTCCGTGTTGATCGTTGTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGAG

>LR134442|8|4|2033787-2036204|PILER-CR
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCGGCCTCGAGTACAACGCCTCCGAGGAGGCTTGGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	AGAGTGACAGAACTCTCCCCCTCACCAGGGTGCCAA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCTGCCGAGTTCGCCGGCGCGACGAGCCTTCCGGTGTCC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTGTCCAAGCAGCTCGGGGTGACCACCGCCGACGT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTCATGCCTGGCCGCACGGCCGGCGCCCCACCATCCG
GTATTCCCAGTCCTAAGGACCGGGCTCCATTGAGGC	TTCATCGAAGAATCCCCGGCAGGCGAACGGAGCTGT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCAACCACTCTCGGGCGGTCTCCCTCCGGTGAGGGTG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTGACCTCGTGAAGGAGATTGAAGCACACGATGCGAC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GCCCGCTACTACCCGCAGCACCCGCTGGAGGGGCTG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACCATAGAGGTTTCGCAGTGTGCCCTGACCTGTGGCG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCCAGGTCCGCGATCAAGTCTTCGATCTCGTCTGCGG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATGCCGGTGGGCGGCAGGCCGCGTTCACCGAACAG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATTTGGACGCCCACGGTGATGCGGCCCGGGCAGTA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACGAGCTAGGCCGTGAGGCGTCGATCGTGATCGGGA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACCGTCCCCCTACCCCGCAGCATCAGCCCGCTCCG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCATCAACACCGTCTACAACAACGGCATCCGGCGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATGGTGGTTCCGCTGCCGGTGGCGCCGCCGCTGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCGACCGCGTAGGAGGCGGACTGTTCGGCGGCCCA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATGTGGCGGACGAAGTAATAGATGGCCGTCAACCAC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	AGCTCGCTCAACGCGAGGCATTGCCGCTTGTTGAGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GGGTTACCCAACCGTCTTCTGTGAGGCGCAGGAGAG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GTTCATTCCTTCGAGCCAGTCGGTGACCAGCCCGG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GAGTCACTTGACAGCCTGCTTCTGAGCGGCTAGAC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TTGTAGATCAGGTAGCCGGAGAGCTTACCGGCCCGCT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CCTTCGCTTGTTGTGTCCGCAGGACAATTCGGTGA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GTCACGATCATGGGCTGGGCCAAGTGGGTCGCCCTGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TGGTCATGGTTGTGCTCCATTACTTGATTACTTGA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	AATACCATCCCAGTCGTTCTCATCGGGGATGGTGAG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTCGATATCGGCAAGGACTCTGTCACATTGCAGGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TTGGTGCGGCGGTCCCCGTCGATGACCTCGATCTCG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CACAGCTCGTACGCCTGCGACAGCGGGTCGCCGGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GCTTCCTCCTCGTTGTAGCCCATCTGGGTCGCCGTCTGG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACGCCATGACGGAAGACAGGATCACTGTCACCTGCGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC

>LR134442|8|8|2033787-2036277|CRISPRCasFinder
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCGGCCTCGAGTACAACGCCTCCGAGGAGGCTTGGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	AGAGTGACAGAACTCTCCCCCTCACCAGGGTGCCAA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCTGCCGAGTTCGCCGGCGCGACGAGCCTTCCGGTGTCC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTGTCCAAGCAGCTCGGGGTGACCACCGCCGACGT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTCATGCCTGGCCGCACGGCCGGCGCCCCACCATCCG
GTATTCCCAGTCCTAAGGACCGGGCTCCATTGAGGC	TTCATCGAAGAATCCCCGGCAGGCGAACGGAGCTGT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCAACCACTCTCGGGCGGTCTCCCTCCGGTGAGGGTG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTGACCTCGTGAAGGAGATTGAAGCACACGATGCGAC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GCCCGCTACTACCCGCAGCACCCGCTGGAGGGGCTG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACCATAGAGGTTTCGCAGTGTGCCCTGACCTGTGGCG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCCAGGTCCGCGATCAAGTCTTCGATCTCGTCTGCGG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATGCCGGTGGGCGGCAGGCCGCGTTCACCGAACAG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATTTGGACGCCCACGGTGATGCGGCCCGGGCAGTA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACGAGCTAGGCCGTGAGGCGTCGATCGTGATCGGGA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACCGTCCCCCTACCCCGCAGCATCAGCCCGCTCCG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCATCAACACCGTCTACAACAACGGCATCCGGCGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATGGTGGTTCCGCTGCCGGTGGCGCCGCCGCTGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCGACCGCGTAGGAGGCGGACTGTTCGGCGGCCCA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATGTGGCGGACGAAGTAATAGATGGCCGTCAACCAC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	AGCTCGCTCAACGCGAGGCATTGCCGCTTGTTGAGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GGGTTACCCAACCGTCTTCTGTGAGGCGCAGGAGAG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GTTCATTCCTTCGAGCCAGTCGGTGACCAGCCCGG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GAGTCACTTGACAGCCTGCTTCTGAGCGGCTAGAC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TTGTAGATCAGGTAGCCGGAGAGCTTACCGGCCCGCT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CCTTCGCTTGTTGTGTCCGCAGGACAATTCGGTGA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GTCACGATCATGGGCTGGGCCAAGTGGGTCGCCCTGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TGGTCATGGTTGTGCTCCATTACTTGATTACTTGA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	AATACCATCCCAGTCGTTCTCATCGGGGATGGTGAG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTCGATATCGGCAAGGACTCTGTCACATTGCAGGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TTGGTGCGGCGGTCCCCGTCGATGACCTCGATCTCG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CACAGCTCGTACGCCTGCGACAGCGGGTCGCCGGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GCTTCCTCCTCGTTGTAGCCCATCTGGGTCGCCGTCTGG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACGCCATGACGGAAGACAGGATCACTGTCACCTGCGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CAGCCGTACGCGTTGCCCTCCTCCGTGTTGATCGTT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGAG

>LR134442|8|4|2033787-2036276|CRT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCGGCCTCGAGTACAACGCCTCCGAGGAGGCTTGGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	AGAGTGACAGAACTCTCCCCCTCACCAGGGTGCCAA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCTGCCGAGTTCGCCGGCGCGACGAGCCTTCCGGTGTCC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTGTCCAAGCAGCTCGGGGTGACCACCGCCGACGT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTCATGCCTGGCCGCACGGCCGGCGCCCCACCATCCG
GTATTCCCAGTCCTAAGGACCGGGCTCCATTGAGGC	TTCATCGAAGAATCCCCGGCAGGCGAACGGAGCTGT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCAACCACTCTCGGGCGGTCTCCCTCCGGTGAGGGTG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTGACCTCGTGAAGGAGATTGAAGCACACGATGCGAC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GCCCGCTACTACCCGCAGCACCCGCTGGAGGGGCTG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACCATAGAGGTTTCGCAGTGTGCCCTGACCTGTGGCG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCCAGGTCCGCGATCAAGTCTTCGATCTCGTCTGCGG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATGCCGGTGGGCGGCAGGCCGCGTTCACCGAACAG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATTTGGACGCCCACGGTGATGCGGCCCGGGCAGTA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACGAGCTAGGCCGTGAGGCGTCGATCGTGATCGGGA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACCGTCCCCCTACCCCGCAGCATCAGCCCGCTCCG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCATCAACACCGTCTACAACAACGGCATCCGGCGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATGGTGGTTCCGCTGCCGGTGGCGCCGCCGCTGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TCGACCGCGTAGGAGGCGGACTGTTCGGCGGCCCA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ATGTGGCGGACGAAGTAATAGATGGCCGTCAACCAC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	AGCTCGCTCAACGCGAGGCATTGCCGCTTGTTGAGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GGGTTACCCAACCGTCTTCTGTGAGGCGCAGGAGAG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GTTCATTCCTTCGAGCCAGTCGGTGACCAGCCCGG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GAGTCACTTGACAGCCTGCTTCTGAGCGGCTAGAC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TTGTAGATCAGGTAGCCGGAGAGCTTACCGGCCCGCT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CCTTCGCTTGTTGTGTCCGCAGGACAATTCGGTGA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GTCACGATCATGGGCTGGGCCAAGTGGGTCGCCCTGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TGGTCATGGTTGTGCTCCATTACTTGATTACTTGA
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	AATACCATCCCAGTCGTTCTCATCGGGGATGGTGAG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CTCGATATCGGCAAGGACTCTGTCACATTGCAGGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	TTGGTGCGGCGGTCCCCGTCGATGACCTCGATCTCG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CACAGCTCGTACGCCTGCGACAGCGGGTCGCCGGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	GCTTCCTCCTCGTTGTAGCCCATCTGGGTCGCCGTCTGG
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	ACGCCATGACGGAAGACAGGATCACTGTCACCTGCGGC
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CAGCCGTACGCGTTGCCCTCCTCCGTGTTGATCGTT
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGA

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH91410.1\|2044131_2045178_+\|Sodium-Bile-acid-symporter-family	unknown	unknown	gnl\|CDD\|372642
LR134442.1\|VEH91385.1\|2026460_2027852_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
LR134442.1\|VEH91375.1\|2022271_2022808_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|373068
LR134442.1\|VEH91412.1\|2045520_2046306_-\|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470	unknown	unknown	gnl\|CDD\|224044
LR134442.1\|VEH91406.1\|2041654_2042455_+\|Voltage-gated-potassium-channel	unknown	unknown	gnl\|CDD\|369572
LR134442.1\|VEH91398.1\|2037173_2038172_-\|Uncharacterized-protein-conserved-in-bacteria-containing-thioredoxin-like-domain	unknown	unknown	gnl\|CDD\|227101
LR134442.1\|VEH91393.1\|2030721_2031657_+\|Uncharacterised-protein	cas8u1	mkCas0114_cas8u1_CAS-I-U	gnl\|CDD\|238334
LR134442.1\|VEH91408.1\|2042896_2043712_-\|Putative-TrmH-family-tRNA/rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
LR134442.1\|VEH91387.1\|2027851_2030725_+\|helicase-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
LR134442.1\|VEH91377.1\|2022812_2023073_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH91379.1\|2023224_2024112_-\|Tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
LR134442.1\|VEH91402.1\|2038967_2039996_-\|Probable-ABC-transporter-permease-protein-HI_1471	unknown	unknown	gnl\|CDD\|376439
LR134442.1\|VEH91414.1\|2046423_2047176_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH91383.1\|2025316_2026459_+\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
LR134442.1\|VEH91404.1\|2039976_2041098_-\|corrinoid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562
LR134442.1\|VEH91396.1\|2031653_2033333_+\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LR134442.1\|VEH91416.1\|2047284_2048058_-\|Enoyl-[acyl-carrier-protein]-reductase-[NADH]	unknown	unknown	gnl\|CDD\|236124
LR134442.1\|VEH91400.1\|2038164_2038971_-\|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470	unknown	unknown	gnl\|CDD\|224045
LR134442.1\|VEH91381.1\|2024228_2024849_+\|Peptide-deformylase	unknown	unknown	gnl\|CDD\|238271
LR134442.1\|VEH91373.1\|2021320_2022265_+\|Septal-ring-factor	unknown	unknown	gnl\|CDD\|366703

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH91410.1\|2044131_2045178_+\|Sodium-Bile-acid-symporter-family	gnl\|CDD\|372642	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). These family members are 7TM putative membrane transporter proteins. The family is similar to the SBF family of bile-acid symporters, pfam01758.	1.41377e-100
LR134442.1\|VEH91385.1\|2026460_2027852_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.77449e-64
LR134442.1\|VEH91375.1\|2022271_2022808_+\|Uncharacterised-protein	gnl\|CDD\|373068	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease. This is a bacterial virion of EndoU nuclease. It is found at C-terminal region of polymorphic toxin proteins.	2.93906e-05
LR134442.1\|VEH91412.1\|2045520_2046306_-\|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	5.91942e-96
LR134442.1\|VEH91406.1\|2041654_2042455_+\|Voltage-gated-potassium-channel	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	2.83984e-13
LR134442.1\|VEH91398.1\|2037173_2038172_-\|Uncharacterized-protein-conserved-in-bacteria-containing-thioredoxin-like-domain	gnl\|CDD\|227101	COG4759, COG4759, Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones].	7.92679e-48
LR134442.1\|VEH91393.1\|2030721_2031657_+\|Uncharacterised-protein	gnl\|CDD\|238334	cd00594, KU, Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.	0.00432416
LR134442.1\|VEH91408.1\|2042896_2043712_-\|Putative-TrmH-family-tRNA/rRNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	1.32732e-59
LR134442.1\|VEH91387.1\|2027851_2030725_+\|helicase-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.97371e-112
LR134442.1\|VEH91379.1\|2023224_2024112_-\|Tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	4.8095e-132
LR134442.1\|VEH91402.1\|2038967_2039996_-\|Probable-ABC-transporter-permease-protein-HI_1471	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.29969e-71
LR134442.1\|VEH91383.1\|2025316_2026459_+\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	3.00008e-47
LR134442.1\|VEH91404.1\|2039976_2041098_-\|corrinoid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	3.35099e-56
LR134442.1\|VEH91396.1\|2031653_2033333_+\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.15643e-105
LR134442.1\|VEH91416.1\|2047284_2048058_-\|Enoyl-[acyl-carrier-protein]-reductase-[NADH]	gnl\|CDD\|236124	PRK07889, PRK07889, enoyl-[acyl-carrier-protein] reductase FabI.	1.93514e-146
LR134442.1\|VEH91400.1\|2038164_2038971_-\|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.70822e-70
LR134442.1\|VEH91381.1\|2024228_2024849_+\|Peptide-deformylase	gnl\|CDD\|238271	cd00487, Pep_deformylase, Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II) as the catalytic metal ion, which can be replaced with a nickel or cobalt ion with no loss of activity. There are two types of peptide deformylases, types I and II, which differ in structure only in the outer surface of the domain. Because these enzymes are essential only in prokaryotes (although eukaryotic gene sequences have been found), they are a target for a new class of antibacterial agents.	2.81024e-59
LR134442.1\|VEH91373.1\|2021320_2022265_+\|Septal-ring-factor	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.03995e-31

>LR134442.1|VEH91396.1|2031653_2033333_+|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO
MSVVRPDFPGLPETLPARMLNEFVYCPRLFHLEWVQQQFATSDDVEEGNYLHRVVDQETGDLPDKSEAWAGRAARSVSLSSRRLGLTTRIDMVEDGGDGTVVPVDYKKGHPDKDGEAWPSDRVQSLVQAALLQEAGYVVERAEIWYAETRQRVHITVNDAALKEITETVAKAWKIAAQPMAPPPLHDSPRCPRCSLVGICLPDEMESLHSPPTQRRPLKRLMAPILEGRPVYVTVQGAVVGIRHERLEIRLKGELQTSYRLIDISQVCIFGNVTVSAQAVRSLIPRDIPVLWFSYGGWFIGITEGLPGKNVDLRIAQFRIPESRKLEIARRMISGKIRNSRTMLRRNSRTSTKNVGDQLKSLALQATEAESPQQLLGIEGVAARLYFENFISLISKDARIDVSGFSEGGRTRRPPEDPVNTLLSFCYSLLIKDLTVTLEAVGFDPYYGMFHRPRFGRPALALDLAEEFRSLVAESVVLQVLNNGEVGSRDFKFRAGGCMLEADGRKAVLRAYERRLDQEITHPQFGYKASYRRIMDIQSRILGAVMIGELDQYTAMMTR
>LR134442.1|VEH91393.1|2030721_2031657_+|Uncharacterised-protein
MNDVKFPALVGDSPLAILAAIGTLKLARDFVDDHALLSWDAADYVPVLHSSMTSIDDVVARLAEIIEAMPEDVVVPGGPPGFPPPGAAPDRLRLKLGELRKFTGALCTDQPSASTVRAWISGLVTDLVADSSGRGAISQYAAPSGKQSMATMLQKPFELVRDTSEYLREAFVGWRRVPGVTGEYLDHRANWDSSEDGRGKAEMRGVPGATWLALMSYSLWTTTASGAQPRTSGWHTVSRGRRREEELRLPLWGERLGPAAVKVLVEHPALVGDWKSIDHDALRTLGVIHVCRARRRKAEGGKSAGVLVPLS
>LR134442.1|VEH91387.1|2027851_2030725_+|helicase-Cas3
MNVADFDSFMRQVHGHPPFPWQSQVVAEALKKGTWPALVDVPTGLGKTSMLDIAVFLLAMSAGGDATAGLGRRRIFMVVDRRIVVDQAEQHGRLIAKALDEAETRTICWEIAERLRSLSDARESDPALRVVKMRGGATWDAAWLPRPDLPAIVTGTVDQVGSRLFFRGYGVSARRRPIDAALVGTDSVIMIDEAHLAQAFTAALASASELDSSEVLGLPGTSIVHLSATAVEQSDGWSAEFDEEAHLHNPTADRRLRAPKTLSFVDSSEKMIAKEMAERAAELSDRPGARVLVVCNTVNRAREVYDALASKKKRSCDAETMLLMGRSRPLDRERVAERVTELFGAGREQTPAPAILVATQTIEVGIDLDATDMITETAAWDALVQRFGRVNRRGDFSDATVTVIEDKAEKPPVYGQAKSRTAVFLRDAACDGLDVSPLALRHLDVPSGLTAEPPLLPALLPAQLDAWARTNPTPSNDPPLDPYLHGINKATAQITVAWRDGLVDAMGELLPAAEAGAAVDALPVRGEECLEVSLQAMRRWLLDGKPKVVADVDEFADVDEFDDIPFSEDESGALALRPTADAGWQWVDAASLRPGDVIVVPSRYGGLDQFGWNPMNHETVRDVAELASLRRGHAVLRLDPGLGDRLGLESPPELTESRAAWSNADDLTERDEAARRLIETIREWLSDEAVLADGSPWVPEDIADLRKAFSQGAVVSDGDDASAVPVLLLHTSSSRTAWQGVDEGTPADSSSLSRRVSLSDHLKAVGARSKQITENLGLPQELSRVIVDAARWHDLGKLDRRFQAMLFGGSEIAAELAEEPLAKSGMSQDDRAQRLRALRLSGLPRGARHEAWSETIVAAHLKSLEEPYPGDEDLLRHLVASHHGHARPLLPPVNDPGTHTADADVEDVHVHVLLPTGVRLADADRFAELNARYGRWGLALLETVVRCADMTVSSEGS
>LR134442.1|VEH91385.1|2026460_2027852_+|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MPIRLDITLLSGRYDAGGGDDPRAVEWPPHPARVFSALRAVASDDELAPLAELERLSPPLIHASAAGAYRTRGYVVTNAREQKGKHQIHPGRTAGFRQRSGSLPHDARVQFDWPDGDTLSDGSLASLDRLARRVPYIGRSTSPAILIFSRVSDPEPLPGLTTYEPAEGPGTVSIRVPYPGYLDELDALHEANQPAWQAAGGRSRRSYREAGVEEKTPGQQPIESSYPDLVILRFVDRRPPGSLVGQFTEALRRKVMGQTEEPLPPALHGHGLPGVPHVAYLGLPLAGFEHADGQLMALAVAIPGLERAERRRILRGILGNDPDRSVSLHVPGIHGSFPLRYSPNDPLPHSATIARWIKPSRTWVSVTPLVLDRYPKDHDLVSAAAVSLAQAGLPTPRAVELSKQPMTPGAVRLRPDELPKRCRGRLYTHARVVFDQPVRGPVLAGAGRYFGVGLFAPERERER
>LR134442.1|VEH91383.1|2025316_2026459_+|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system
MELTLNTLQEKMSGMEWAAARITATYQPTGGPGSRVFPPTFPTTATDPSPYLMEERVRDGEVRRAVVLDQVPAQAHRCQDAEALAWRQGIVRMPMLRLVHDGAARFELIGLDAPHRAFDAYWRDSMLDGVKFDDTEIGKALLSSSLADATALLEHDPGTLAHGGWNSHREGRQAKFPRIYSSEVIGWDPVAGVRKAGRMDPANLTGSRRGDGDEWSYSPTADKKKDTRLSEIGHGNIAPNPTHGGVTITEATRTAILSLTATRRIRFGSLDRAAVDAAHVLLASFALLGDRLAFGQAGLWLRSGCDLVTQSETLEWIGRGGTVEQFTLSPHEAVQLYDEALRAAQEAGVPLHLEPVELTPSKALAAALDFSLTKAEPAGE
>LR134442.1|VEH91381.1|2024228_2024849_+|Peptide-deformylase
MKSPAEWATTGRILRITRWDEPVMSSRTRPVTDFGDELHQLVADMFRTMAAADGVGLAAPQVDSDLALFVFNCPDASGRLVYGIVCNPVVTLPEGNDRRLVSEQEGCLSWPGAYQQLARPDFAVCEGQDENGEPVRVEGTGLLARCLQHETDHLQGTVFGDRLSKRSRRRLDEEKERLAPLYPDDWPIHPKRTASEVGRAEEPDKG
>LR134442.1|VEH91379.1|2023224_2024112_-|Tyrosine-recombinase-XerC
MARYGDYLSLQRGYSVHTVRAYLGDITDLLGFLAGRGHTDLAQVTLPELRRWLAAQQADGATSATLARRAGAARGFFAWAKDTRIVPADVAGGLKSPKVGRSLPQTITQADARELMDAAAAAAAESEGPKGVRDVAILEVLYGSGIRVSELCGLDVGDIDAGTGTARVLGKGNKERVVPLGTPALAAVDAWLAQRGQWVIPASGRAMFLGVRGGRIDPAVVRRVVHTALRAVPQAPDIGPHGLRHAMATHLLEGGADLRSVQEMLGHASLATTQIYTHISDERLRAAFNQAHPRA
>LR134442.1|VEH91377.1|2022812_2023073_+|Uncharacterised-protein
MSTSEELLAFADQVLPEPASEDVLIVQDIAMDDDESIAYGALDLLVAARVTIPEDLLLRALDEYSDSWTFVELATEALERQRQTAA
>LR134442.1|VEH91375.1|2022271_2022808_+|Uncharacterised-protein
MPEEPRPGPDEAPAGQDPPPPATGTDRPGRARLTPALSGDGRAYVTADGRRLLFGPADVHGLDEAREHVVEGSTRRSGRRTGGHLYATVEAERREGQIAFPRDWDADRIMAAARPVIDRPENLLLQGEHRIELSSTIDGVRLAVRIRLPKNGPAVVTVFPTGGVGVKRVHNGRLRDVG
>LR134442.1|VEH91373.1|2021320_2022265_+|Septal-ring-factor
MLLQCLVVLAAAPVGAARADGTRVIPVNGPVLRGFDPPAEKWLAGHRGVDLGGIDGDVVHAAADGTVTFVGVIDGVQMLTVTHAGGLRTTYQPVAATVSRGDRVKAGQRIGTLLAGHCARQACLHLGLKRGDEYLDPLAWINGDKGTGDVSLLPSDASVHDVLPSWWVERLRQAAADSSAKAPGWPADGPVTSPFSHRINPILGTHEFHDGLDIGASCGSPVRAAWSGTVTYAAPMQGFGNRVEVDHGTMEGRHRSSSYNHLADESIGLVRVGDHVEAGQVIAYVGTTGLSTGCHLHFSVYLDGTAVDPAPFLP
>LR134442.1|VEH91398.1|2037173_2038172_-|Uncharacterized-protein-conserved-in-bacteria-containing-thioredoxin-like-domain
MHETSSGPHVMSGAATDMRSRDERARDRHAPCSTIARASGEQLIATATPYDRFVLVEVQAPWPDDMRTPPWMRSDWSPERVGALNRAIAGAEAAGVRAKFVALAPDRQYSVPGNPRAIILERHAGHCIRWVRQEFFLGEEDGLDQMCAVAGGPLGQDGFRVGRVRELLICAHGQVDSCCGRLGVRLHRAARQMLGGDTTTRVWRCSAIGGHRFAPTALDFPSGRMWGHLVEDDLPVLLTGREIDPIWDRYRGAVGLDTRAEQAVEGELLRRYGPALVDAELVFRVEDGYVDVSVDLVGIHDRYRMVVITGEPRMVVANCKGMTSPVTPISVS
>LR134442.1|VEH91400.1|2038164_2038971_-|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470
MSAPVAAMLGAGFAFPGAGWLFQHVNWQVDAHELMAVLGSNGRGKSTMIRCFMGWLRLAEGSVRHSAEPAFVPQHHSPVFAYSVLDMVLMGRARRLGMMRLPGARDRAAALEALERVGAAHLAERDFPTLSGGEQQLVLVARAIIGQTGLLVLDEPGASLDLANQARMVSIVRELCDEGWAAIMITHQPDHALEAADKVLLMDGSDGGVFGAPRLVMTDESLTRLYGIPTRIISYETGGTERLTVASSLRGRESAWCDGQSAKERPDA
>LR134442.1|VEH91402.1|2038967_2039996_-|Probable-ABC-transporter-permease-protein-HI_1471
MPTSAAKCHRRWTRSLTPLLLVLVGLVALSIGRYVVDPLQVLRILASHLMPVQQTWTAMQENAVMNIRLPRVLLSMLVGAGLAAAGAALQAIFGNPIVSPQALGVSSAASCGGVVSIMLGTGPFSMIGLCCVFGIGALAAVFAISRVRGTVSIVTIVLGGLVVGSFFSAITSLLTYVADPYTEMPAIVFWLLGSLAAATTGKLLMAAVPVTIGSVVLVVLRWRINILSLGDEEASALGVHPQRIRWLLLVAVALIVAGAVSVSGVIGWVGLVVPHLTRFLVGSDNRQVIPQSLLIGAAYLVVIDTITRSMAAAEIPLGVLTAIIGAPVFVWALRSSTRGAWA
>LR134442.1|VEH91404.1|2039976_2041098_-|corrinoid-ABC-transporter-substrate-binding-protein
MRSSIRPGRLCATAAAVILCTSLVTACSSSTPQDASSGKAGVDVTDLTGARVHLDQTAQRVVTIPLPAASMLVAVDGTADHLVGMNSASMTAIENGFLGEAYPQLLDVPSDVAGTDFAPNMESIMRTDPDLVIQWGDEGSGVVDPLTQSGIPVAQITYGTQERIEAITALYGELLGKQDRARRIVDTMHERRAELERREPATTADGTQPSVLYLRGDKDAFNANGTNSYNHFTTELAGARDAAEKVNGSSVAVSPEQILAWDPDVILLGNFGQMTPEDLYNDLRFAELKAVQNRQVYKVPLGGYRWDPPSQESSLMWTWLAAVVRGESAPGLREMIADDYEFLYNKRPDDTQLDQILQTEANKDSANYADFGR
>LR134442.1|VEH91406.1|2041654_2042455_+|Voltage-gated-potassium-channel
MASSDIRAGRLRAWERVTEWPLIAVAMIFLVAYAWETIADLHGTPRMITEVTMDVIWVLFVVDYLVRLVLAPARGRWFLEHLFDFAVVALPLLRPLRLLRVVTLVRVLQRNAGLALRGRIMIYAAGGATLITFAASLAALEAERHEPGSSITTFPDALWWALVTITTVGYGDLAPVTAIGRTVAALLMIGGIALIGVITATLASWIVSTMAVESAEEEAATRVQVADLQRQIAELTEQIAALSGTTAEPPASGRDTRREQDDGTTV
>LR134442.1|VEH91408.1|2042896_2043712_-|Putative-TrmH-family-tRNA/rRNA-methyltransferase
MAILVPVTDPADERLGDYVRLRDVSLRRSLEAAHGLFIAEGEKVIRRACEAGYEPRSFLLAERWIDGLREILDRFDVPVYVVDEVLAEQVTGFHVHRGALASMRRTTGRNMTDLLGAQRLVVAEDIVDHTNVGAIIRCAAALGWDGVLLAPRAADPLYRRAIKTSMGAVFFLPWARMDDWAGGLDVLKQAGFTVAAMALREDAVTLDAFAAELAGEPRKLALLMGTEGSGLSSHWLRQADVAVRIPMARGIDSLNVAAAAAVACYTLRPEQ
>LR134442.1|VEH91410.1|2044131_2045178_+|Sodium-Bile-acid-symporter-family
MTTPQTPSHERRPWYRRIRIDWFVTAIVVSVIVATLLPATGEANHVLDWGVKVLIFILFYLYGVRLAPREALAGLTHWRLHVTILVFTYVLFPLLALGLRPLSGHYLSPELYLGVLWLSILPSTVQSSINFTSIAGGNVAGAIVSASLSNLLGVFFTPLLAMVVMSTGGLVIEPSSILDLVVQLLLPFVLGQLTRRWTAGFVTSHPRLKLVDQFSIVCVVYSAFSDGINEGVWHTVGLFDIVRLLPVLFVVLALMLVLTWWLPGRLGFGRRDQIAIQFCGTKKSLATGAPMASVLFSAAQVPLLVLPLMIFHMAQLIACGVIAGRYRTKPRAWHERGGRLSVAEESPA
>LR134442.1|VEH91412.1|2045520_2046306_-|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470
MVSVAELAGVSVRRGEKLLLDDVNLSIDEGQRWVMVGPNGAGKTTLLSILATQLYPTKGVVGILGEVLGAVNVFELRPRIGLTSASIAHRIPYREKVRDVVVSASYAINGRWHEHYDEMDFDRAGRLMDYFGVAHLAERTYGTLSEGERKRVEIARAMMTDPELLLLDEPGAGLDLGGRERLVSTLNQLCASPYAPTTVLVTHHVEEIPAGITHALLLSDGRVAASGPAGEVLTDENMSAVYGMPLHVEQAADGRWTAKAA
>LR134442.1|VEH91414.1|2046423_2047176_+|Uncharacterised-protein
MPDPVIECLRLVSLLNTMGVGALDAPLAEHALRTGEAGETDRPHHVADPESVLGLDAGGAVPVRLALARIADRMRGALWMLVLARPGNLGGLRGPAAVNEQALACGAAVVNHDGGVTWFPHPIGPAMQWQLARAERPLPPPTPGEAATALNEQILESARELAALDATAGQRPADAASVVLGRAYPARNQQLLDKAMLWREACAAGLDAGDALLHSHAQLTRSTHLRRLDAVCCEAISAAASWPDMSPART
>LR134442.1|VEH91416.1|2047284_2048058_-|Enoyl-[acyl-carrier-protein]-reductase-[NADH]
MGILEGKKILVTGITMDTSIAYKAAEVAQREGADIIVTGFGRALSLCRRVCAKLDPAPPVIELDATSAESLAALPGALAENGFDHVDGVLHSIAFANPKTALGGNFLSTDWDDVATALHTSTYSYPALAVALKDMMGPGSSVVGLTFDATISWPSYDWMGVAKAGLESANRYLARYLGPDGIRANLVSAGPIDSLAKKAIPGSASLNDVWDERAPLGWDAKDATPVGTVICALFSDLFAATTGEVIHVDGGLFSTGA

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Crispr_ID: LR134442_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_9

2036435-2036542

Unclear

Consensus_repeat	Method
GTATTCCCGGTCCTAAGGACCGGGCTCCATTGAGGC	CRISPRCasFinder

1 spacers

cas1,cas8u1,cas3,csb2gr5,csb1gr7

The CRISPR arrays of LR134442_9

>merge|LR134442|9|2036435-2036542|CRISPRCasFinder
AGATTCCTGGTCATCAAGATCAGGCTCCATTGAGGTATAGGCAAAGCCCATGATTATGGGTGGAGTATGCTCATTTTCCCGGTCGTAAGGACCGGGCTCCATTGAGGC

>LR134442|9|9|2036435-2036542|CRISPRCasFinder
AGATTCCTGGTCATCAAGATCAGGCTCCATTGAGGT	ATAGGCAAAGCCCATGATTATGGGTGGAGTATGCTC
ATTTTCCCGGTCGTAAGGACCGGGCTCCATTGAGGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH91410.1\|2044131_2045178_+\|Sodium-Bile-acid-symporter-family	unknown	unknown	gnl\|CDD\|372642
LR134442.1\|VEH91385.1\|2026460_2027852_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
LR134442.1\|VEH91375.1\|2022271_2022808_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|373068
LR134442.1\|VEH91412.1\|2045520_2046306_-\|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470	unknown	unknown	gnl\|CDD\|224044
LR134442.1\|VEH91406.1\|2041654_2042455_+\|Voltage-gated-potassium-channel	unknown	unknown	gnl\|CDD\|369572
LR134442.1\|VEH91398.1\|2037173_2038172_-\|Uncharacterized-protein-conserved-in-bacteria-containing-thioredoxin-like-domain	unknown	unknown	gnl\|CDD\|227101
LR134442.1\|VEH91393.1\|2030721_2031657_+\|Uncharacterised-protein	cas8u1	mkCas0114_cas8u1_CAS-I-U	gnl\|CDD\|238334
LR134442.1\|VEH91408.1\|2042896_2043712_-\|Putative-TrmH-family-tRNA/rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
LR134442.1\|VEH91387.1\|2027851_2030725_+\|helicase-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
LR134442.1\|VEH91377.1\|2022812_2023073_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH91379.1\|2023224_2024112_-\|Tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
LR134442.1\|VEH91402.1\|2038967_2039996_-\|Probable-ABC-transporter-permease-protein-HI_1471	unknown	unknown	gnl\|CDD\|376439
LR134442.1\|VEH91414.1\|2046423_2047176_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH91383.1\|2025316_2026459_+\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
LR134442.1\|VEH91404.1\|2039976_2041098_-\|corrinoid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562
LR134442.1\|VEH91396.1\|2031653_2033333_+\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LR134442.1\|VEH91416.1\|2047284_2048058_-\|Enoyl-[acyl-carrier-protein]-reductase-[NADH]	unknown	unknown	gnl\|CDD\|236124
LR134442.1\|VEH91400.1\|2038164_2038971_-\|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470	unknown	unknown	gnl\|CDD\|224045
LR134442.1\|VEH91381.1\|2024228_2024849_+\|Peptide-deformylase	unknown	unknown	gnl\|CDD\|238271
LR134442.1\|VEH91373.1\|2021320_2022265_+\|Septal-ring-factor	unknown	unknown	gnl\|CDD\|366703

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH91410.1\|2044131_2045178_+\|Sodium-Bile-acid-symporter-family	gnl\|CDD\|372642	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). These family members are 7TM putative membrane transporter proteins. The family is similar to the SBF family of bile-acid symporters, pfam01758.	1.41377e-100
LR134442.1\|VEH91385.1\|2026460_2027852_+\|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.77449e-64
LR134442.1\|VEH91375.1\|2022271_2022808_+\|Uncharacterised-protein	gnl\|CDD\|373068	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease. This is a bacterial virion of EndoU nuclease. It is found at C-terminal region of polymorphic toxin proteins.	2.93906e-05
LR134442.1\|VEH91412.1\|2045520_2046306_-\|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	5.91942e-96
LR134442.1\|VEH91406.1\|2041654_2042455_+\|Voltage-gated-potassium-channel	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	2.83984e-13
LR134442.1\|VEH91398.1\|2037173_2038172_-\|Uncharacterized-protein-conserved-in-bacteria-containing-thioredoxin-like-domain	gnl\|CDD\|227101	COG4759, COG4759, Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones].	7.92679e-48
LR134442.1\|VEH91393.1\|2030721_2031657_+\|Uncharacterised-protein	gnl\|CDD\|238334	cd00594, KU, Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.	0.00432416
LR134442.1\|VEH91408.1\|2042896_2043712_-\|Putative-TrmH-family-tRNA/rRNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	1.32732e-59
LR134442.1\|VEH91387.1\|2027851_2030725_+\|helicase-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.97371e-112
LR134442.1\|VEH91379.1\|2023224_2024112_-\|Tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	4.8095e-132
LR134442.1\|VEH91402.1\|2038967_2039996_-\|Probable-ABC-transporter-permease-protein-HI_1471	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.29969e-71
LR134442.1\|VEH91383.1\|2025316_2026459_+\|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	3.00008e-47
LR134442.1\|VEH91404.1\|2039976_2041098_-\|corrinoid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	3.35099e-56
LR134442.1\|VEH91396.1\|2031653_2033333_+\|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.15643e-105
LR134442.1\|VEH91416.1\|2047284_2048058_-\|Enoyl-[acyl-carrier-protein]-reductase-[NADH]	gnl\|CDD\|236124	PRK07889, PRK07889, enoyl-[acyl-carrier-protein] reductase FabI.	1.93514e-146
LR134442.1\|VEH91400.1\|2038164_2038971_-\|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.70822e-70
LR134442.1\|VEH91381.1\|2024228_2024849_+\|Peptide-deformylase	gnl\|CDD\|238271	cd00487, Pep_deformylase, Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II) as the catalytic metal ion, which can be replaced with a nickel or cobalt ion with no loss of activity. There are two types of peptide deformylases, types I and II, which differ in structure only in the outer surface of the domain. Because these enzymes are essential only in prokaryotes (although eukaryotic gene sequences have been found), they are a target for a new class of antibacterial agents.	2.81024e-59
LR134442.1\|VEH91373.1\|2021320_2022265_+\|Septal-ring-factor	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.03995e-31

>LR134442.1|VEH91396.1|2031653_2033333_+|CRISPR-associated-endonuclease-Cas1,-subtype-CYANO
MSVVRPDFPGLPETLPARMLNEFVYCPRLFHLEWVQQQFATSDDVEEGNYLHRVVDQETGDLPDKSEAWAGRAARSVSLSSRRLGLTTRIDMVEDGGDGTVVPVDYKKGHPDKDGEAWPSDRVQSLVQAALLQEAGYVVERAEIWYAETRQRVHITVNDAALKEITETVAKAWKIAAQPMAPPPLHDSPRCPRCSLVGICLPDEMESLHSPPTQRRPLKRLMAPILEGRPVYVTVQGAVVGIRHERLEIRLKGELQTSYRLIDISQVCIFGNVTVSAQAVRSLIPRDIPVLWFSYGGWFIGITEGLPGKNVDLRIAQFRIPESRKLEIARRMISGKIRNSRTMLRRNSRTSTKNVGDQLKSLALQATEAESPQQLLGIEGVAARLYFENFISLISKDARIDVSGFSEGGRTRRPPEDPVNTLLSFCYSLLIKDLTVTLEAVGFDPYYGMFHRPRFGRPALALDLAEEFRSLVAESVVLQVLNNGEVGSRDFKFRAGGCMLEADGRKAVLRAYERRLDQEITHPQFGYKASYRRIMDIQSRILGAVMIGELDQYTAMMTR
>LR134442.1|VEH91393.1|2030721_2031657_+|Uncharacterised-protein
MNDVKFPALVGDSPLAILAAIGTLKLARDFVDDHALLSWDAADYVPVLHSSMTSIDDVVARLAEIIEAMPEDVVVPGGPPGFPPPGAAPDRLRLKLGELRKFTGALCTDQPSASTVRAWISGLVTDLVADSSGRGAISQYAAPSGKQSMATMLQKPFELVRDTSEYLREAFVGWRRVPGVTGEYLDHRANWDSSEDGRGKAEMRGVPGATWLALMSYSLWTTTASGAQPRTSGWHTVSRGRRREEELRLPLWGERLGPAAVKVLVEHPALVGDWKSIDHDALRTLGVIHVCRARRRKAEGGKSAGVLVPLS
>LR134442.1|VEH91387.1|2027851_2030725_+|helicase-Cas3
MNVADFDSFMRQVHGHPPFPWQSQVVAEALKKGTWPALVDVPTGLGKTSMLDIAVFLLAMSAGGDATAGLGRRRIFMVVDRRIVVDQAEQHGRLIAKALDEAETRTICWEIAERLRSLSDARESDPALRVVKMRGGATWDAAWLPRPDLPAIVTGTVDQVGSRLFFRGYGVSARRRPIDAALVGTDSVIMIDEAHLAQAFTAALASASELDSSEVLGLPGTSIVHLSATAVEQSDGWSAEFDEEAHLHNPTADRRLRAPKTLSFVDSSEKMIAKEMAERAAELSDRPGARVLVVCNTVNRAREVYDALASKKKRSCDAETMLLMGRSRPLDRERVAERVTELFGAGREQTPAPAILVATQTIEVGIDLDATDMITETAAWDALVQRFGRVNRRGDFSDATVTVIEDKAEKPPVYGQAKSRTAVFLRDAACDGLDVSPLALRHLDVPSGLTAEPPLLPALLPAQLDAWARTNPTPSNDPPLDPYLHGINKATAQITVAWRDGLVDAMGELLPAAEAGAAVDALPVRGEECLEVSLQAMRRWLLDGKPKVVADVDEFADVDEFDDIPFSEDESGALALRPTADAGWQWVDAASLRPGDVIVVPSRYGGLDQFGWNPMNHETVRDVAELASLRRGHAVLRLDPGLGDRLGLESPPELTESRAAWSNADDLTERDEAARRLIETIREWLSDEAVLADGSPWVPEDIADLRKAFSQGAVVSDGDDASAVPVLLLHTSSSRTAWQGVDEGTPADSSSLSRRVSLSDHLKAVGARSKQITENLGLPQELSRVIVDAARWHDLGKLDRRFQAMLFGGSEIAAELAEEPLAKSGMSQDDRAQRLRALRLSGLPRGARHEAWSETIVAAHLKSLEEPYPGDEDLLRHLVASHHGHARPLLPPVNDPGTHTADADVEDVHVHVLLPTGVRLADADRFAELNARYGRWGLALLETVVRCADMTVSSEGS
>LR134442.1|VEH91385.1|2026460_2027852_+|CRISPR-associated-protein-GSU0054/csb2,-Dpsyc-system
MPIRLDITLLSGRYDAGGGDDPRAVEWPPHPARVFSALRAVASDDELAPLAELERLSPPLIHASAAGAYRTRGYVVTNAREQKGKHQIHPGRTAGFRQRSGSLPHDARVQFDWPDGDTLSDGSLASLDRLARRVPYIGRSTSPAILIFSRVSDPEPLPGLTTYEPAEGPGTVSIRVPYPGYLDELDALHEANQPAWQAAGGRSRRSYREAGVEEKTPGQQPIESSYPDLVILRFVDRRPPGSLVGQFTEALRRKVMGQTEEPLPPALHGHGLPGVPHVAYLGLPLAGFEHADGQLMALAVAIPGLERAERRRILRGILGNDPDRSVSLHVPGIHGSFPLRYSPNDPLPHSATIARWIKPSRTWVSVTPLVLDRYPKDHDLVSAAAVSLAQAGLPTPRAVELSKQPMTPGAVRLRPDELPKRCRGRLYTHARVVFDQPVRGPVLAGAGRYFGVGLFAPERERER
>LR134442.1|VEH91383.1|2025316_2026459_+|CRISPR-associated-protein-GSU0053/csb1,-Dpsyc-system
MELTLNTLQEKMSGMEWAAARITATYQPTGGPGSRVFPPTFPTTATDPSPYLMEERVRDGEVRRAVVLDQVPAQAHRCQDAEALAWRQGIVRMPMLRLVHDGAARFELIGLDAPHRAFDAYWRDSMLDGVKFDDTEIGKALLSSSLADATALLEHDPGTLAHGGWNSHREGRQAKFPRIYSSEVIGWDPVAGVRKAGRMDPANLTGSRRGDGDEWSYSPTADKKKDTRLSEIGHGNIAPNPTHGGVTITEATRTAILSLTATRRIRFGSLDRAAVDAAHVLLASFALLGDRLAFGQAGLWLRSGCDLVTQSETLEWIGRGGTVEQFTLSPHEAVQLYDEALRAAQEAGVPLHLEPVELTPSKALAAALDFSLTKAEPAGE
>LR134442.1|VEH91381.1|2024228_2024849_+|Peptide-deformylase
MKSPAEWATTGRILRITRWDEPVMSSRTRPVTDFGDELHQLVADMFRTMAAADGVGLAAPQVDSDLALFVFNCPDASGRLVYGIVCNPVVTLPEGNDRRLVSEQEGCLSWPGAYQQLARPDFAVCEGQDENGEPVRVEGTGLLARCLQHETDHLQGTVFGDRLSKRSRRRLDEEKERLAPLYPDDWPIHPKRTASEVGRAEEPDKG
>LR134442.1|VEH91379.1|2023224_2024112_-|Tyrosine-recombinase-XerC
MARYGDYLSLQRGYSVHTVRAYLGDITDLLGFLAGRGHTDLAQVTLPELRRWLAAQQADGATSATLARRAGAARGFFAWAKDTRIVPADVAGGLKSPKVGRSLPQTITQADARELMDAAAAAAAESEGPKGVRDVAILEVLYGSGIRVSELCGLDVGDIDAGTGTARVLGKGNKERVVPLGTPALAAVDAWLAQRGQWVIPASGRAMFLGVRGGRIDPAVVRRVVHTALRAVPQAPDIGPHGLRHAMATHLLEGGADLRSVQEMLGHASLATTQIYTHISDERLRAAFNQAHPRA
>LR134442.1|VEH91377.1|2022812_2023073_+|Uncharacterised-protein
MSTSEELLAFADQVLPEPASEDVLIVQDIAMDDDESIAYGALDLLVAARVTIPEDLLLRALDEYSDSWTFVELATEALERQRQTAA
>LR134442.1|VEH91375.1|2022271_2022808_+|Uncharacterised-protein
MPEEPRPGPDEAPAGQDPPPPATGTDRPGRARLTPALSGDGRAYVTADGRRLLFGPADVHGLDEAREHVVEGSTRRSGRRTGGHLYATVEAERREGQIAFPRDWDADRIMAAARPVIDRPENLLLQGEHRIELSSTIDGVRLAVRIRLPKNGPAVVTVFPTGGVGVKRVHNGRLRDVG
>LR134442.1|VEH91373.1|2021320_2022265_+|Septal-ring-factor
MLLQCLVVLAAAPVGAARADGTRVIPVNGPVLRGFDPPAEKWLAGHRGVDLGGIDGDVVHAAADGTVTFVGVIDGVQMLTVTHAGGLRTTYQPVAATVSRGDRVKAGQRIGTLLAGHCARQACLHLGLKRGDEYLDPLAWINGDKGTGDVSLLPSDASVHDVLPSWWVERLRQAAADSSAKAPGWPADGPVTSPFSHRINPILGTHEFHDGLDIGASCGSPVRAAWSGTVTYAAPMQGFGNRVEVDHGTMEGRHRSSSYNHLADESIGLVRVGDHVEAGQVIAYVGTTGLSTGCHLHFSVYLDGTAVDPAPFLP
>LR134442.1|VEH91398.1|2037173_2038172_-|Uncharacterized-protein-conserved-in-bacteria-containing-thioredoxin-like-domain
MHETSSGPHVMSGAATDMRSRDERARDRHAPCSTIARASGEQLIATATPYDRFVLVEVQAPWPDDMRTPPWMRSDWSPERVGALNRAIAGAEAAGVRAKFVALAPDRQYSVPGNPRAIILERHAGHCIRWVRQEFFLGEEDGLDQMCAVAGGPLGQDGFRVGRVRELLICAHGQVDSCCGRLGVRLHRAARQMLGGDTTTRVWRCSAIGGHRFAPTALDFPSGRMWGHLVEDDLPVLLTGREIDPIWDRYRGAVGLDTRAEQAVEGELLRRYGPALVDAELVFRVEDGYVDVSVDLVGIHDRYRMVVITGEPRMVVANCKGMTSPVTPISVS
>LR134442.1|VEH91400.1|2038164_2038971_-|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470
MSAPVAAMLGAGFAFPGAGWLFQHVNWQVDAHELMAVLGSNGRGKSTMIRCFMGWLRLAEGSVRHSAEPAFVPQHHSPVFAYSVLDMVLMGRARRLGMMRLPGARDRAAALEALERVGAAHLAERDFPTLSGGEQQLVLVARAIIGQTGLLVLDEPGASLDLANQARMVSIVRELCDEGWAAIMITHQPDHALEAADKVLLMDGSDGGVFGAPRLVMTDESLTRLYGIPTRIISYETGGTERLTVASSLRGRESAWCDGQSAKERPDA
>LR134442.1|VEH91402.1|2038967_2039996_-|Probable-ABC-transporter-permease-protein-HI_1471
MPTSAAKCHRRWTRSLTPLLLVLVGLVALSIGRYVVDPLQVLRILASHLMPVQQTWTAMQENAVMNIRLPRVLLSMLVGAGLAAAGAALQAIFGNPIVSPQALGVSSAASCGGVVSIMLGTGPFSMIGLCCVFGIGALAAVFAISRVRGTVSIVTIVLGGLVVGSFFSAITSLLTYVADPYTEMPAIVFWLLGSLAAATTGKLLMAAVPVTIGSVVLVVLRWRINILSLGDEEASALGVHPQRIRWLLLVAVALIVAGAVSVSGVIGWVGLVVPHLTRFLVGSDNRQVIPQSLLIGAAYLVVIDTITRSMAAAEIPLGVLTAIIGAPVFVWALRSSTRGAWA
>LR134442.1|VEH91404.1|2039976_2041098_-|corrinoid-ABC-transporter-substrate-binding-protein
MRSSIRPGRLCATAAAVILCTSLVTACSSSTPQDASSGKAGVDVTDLTGARVHLDQTAQRVVTIPLPAASMLVAVDGTADHLVGMNSASMTAIENGFLGEAYPQLLDVPSDVAGTDFAPNMESIMRTDPDLVIQWGDEGSGVVDPLTQSGIPVAQITYGTQERIEAITALYGELLGKQDRARRIVDTMHERRAELERREPATTADGTQPSVLYLRGDKDAFNANGTNSYNHFTTELAGARDAAEKVNGSSVAVSPEQILAWDPDVILLGNFGQMTPEDLYNDLRFAELKAVQNRQVYKVPLGGYRWDPPSQESSLMWTWLAAVVRGESAPGLREMIADDYEFLYNKRPDDTQLDQILQTEANKDSANYADFGR
>LR134442.1|VEH91406.1|2041654_2042455_+|Voltage-gated-potassium-channel
MASSDIRAGRLRAWERVTEWPLIAVAMIFLVAYAWETIADLHGTPRMITEVTMDVIWVLFVVDYLVRLVLAPARGRWFLEHLFDFAVVALPLLRPLRLLRVVTLVRVLQRNAGLALRGRIMIYAAGGATLITFAASLAALEAERHEPGSSITTFPDALWWALVTITTVGYGDLAPVTAIGRTVAALLMIGGIALIGVITATLASWIVSTMAVESAEEEAATRVQVADLQRQIAELTEQIAALSGTTAEPPASGRDTRREQDDGTTV
>LR134442.1|VEH91408.1|2042896_2043712_-|Putative-TrmH-family-tRNA/rRNA-methyltransferase
MAILVPVTDPADERLGDYVRLRDVSLRRSLEAAHGLFIAEGEKVIRRACEAGYEPRSFLLAERWIDGLREILDRFDVPVYVVDEVLAEQVTGFHVHRGALASMRRTTGRNMTDLLGAQRLVVAEDIVDHTNVGAIIRCAAALGWDGVLLAPRAADPLYRRAIKTSMGAVFFLPWARMDDWAGGLDVLKQAGFTVAAMALREDAVTLDAFAAELAGEPRKLALLMGTEGSGLSSHWLRQADVAVRIPMARGIDSLNVAAAAAVACYTLRPEQ
>LR134442.1|VEH91410.1|2044131_2045178_+|Sodium-Bile-acid-symporter-family
MTTPQTPSHERRPWYRRIRIDWFVTAIVVSVIVATLLPATGEANHVLDWGVKVLIFILFYLYGVRLAPREALAGLTHWRLHVTILVFTYVLFPLLALGLRPLSGHYLSPELYLGVLWLSILPSTVQSSINFTSIAGGNVAGAIVSASLSNLLGVFFTPLLAMVVMSTGGLVIEPSSILDLVVQLLLPFVLGQLTRRWTAGFVTSHPRLKLVDQFSIVCVVYSAFSDGINEGVWHTVGLFDIVRLLPVLFVVLALMLVLTWWLPGRLGFGRRDQIAIQFCGTKKSLATGAPMASVLFSAAQVPLLVLPLMIFHMAQLIACGVIAGRYRTKPRAWHERGGRLSVAEESPA
>LR134442.1|VEH91412.1|2045520_2046306_-|Uncharacterized-ABC-transporter-ATP-binding-protein-HI_1470
MVSVAELAGVSVRRGEKLLLDDVNLSIDEGQRWVMVGPNGAGKTTLLSILATQLYPTKGVVGILGEVLGAVNVFELRPRIGLTSASIAHRIPYREKVRDVVVSASYAINGRWHEHYDEMDFDRAGRLMDYFGVAHLAERTYGTLSEGERKRVEIARAMMTDPELLLLDEPGAGLDLGGRERLVSTLNQLCASPYAPTTVLVTHHVEEIPAGITHALLLSDGRVAASGPAGEVLTDENMSAVYGMPLHVEQAADGRWTAKAA
>LR134442.1|VEH91414.1|2046423_2047176_+|Uncharacterised-protein
MPDPVIECLRLVSLLNTMGVGALDAPLAEHALRTGEAGETDRPHHVADPESVLGLDAGGAVPVRLALARIADRMRGALWMLVLARPGNLGGLRGPAAVNEQALACGAAVVNHDGGVTWFPHPIGPAMQWQLARAERPLPPPTPGEAATALNEQILESARELAALDATAGQRPADAASVVLGRAYPARNQQLLDKAMLWREACAAGLDAGDALLHSHAQLTRSTHLRRLDAVCCEAISAAASWPDMSPART
>LR134442.1|VEH91416.1|2047284_2048058_-|Enoyl-[acyl-carrier-protein]-reductase-[NADH]
MGILEGKKILVTGITMDTSIAYKAAEVAQREGADIIVTGFGRALSLCRRVCAKLDPAPPVIELDATSAESLAALPGALAENGFDHVDGVLHSIAFANPKTALGGNFLSTDWDDVATALHTSTYSYPALAVALKDMMGPGSSVVGLTFDATISWPSYDWMGVAKAGLESANRYLARYLGPDGIRANLVSAGPIDSLAKKAIPGSASLNDVWDERAPLGWDAKDATPVGTVICALFSDLFAATTGEVIHVDGGLFSTGA

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Crispr_ID: LR134442_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_12

2396567-2396659

Orphan

Consensus_repeat	Method
ACGGTCGCCCCACACATGAGGGCGACGGCGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134442_12

>merge|LR134442|12|2396567-2396659|CRISPRCasFinder
ACGGTCGCCCCACACATGAGGGCGACGGCGCGCACGGTCTCCCAAGCCGGTAGTGATCCGACGGTCGCCCCACACATGAGGGCGACGGCGCGC

>LR134442|12|12|2396567-2396659|CRISPRCasFinder
ACGGTCGCCCCACACATGAGGGCGACGGCGCGC	ACGGTCTCCCAAGCCGGTAGTGATCCG
ACGGTCGCCCCACACATGAGGGCGACGGCGCGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH91871.1\|2399864_2400317_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH91869.1\|2398332_2399565_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH91851.1\|2389964_2391602_-\|Coenzyme-A-disulfide-reductase	unknown	unknown	gnl\|CDD\|163244
LR134442.1\|VEH91857.1\|2392779_2394657_+\|Tyrosine-phosphorylated-protein-A	unknown	unknown	gnl\|CDD\|273597
LR134442.1\|VEH91863.1\|2396294_2396534_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH91879.1\|2405045_2406104_+\|L-threonine-3-dehydrogenase	unknown	unknown	gnl\|CDD\|176196
LR134442.1\|VEH91849.1\|2389697_2389976_+\|Copper-sensitive-operon-repressor	unknown	unknown	gnl\|CDD\|197385
LR134442.1\|VEH91861.1\|2395787_2396291_-\|Domain-of-uncharacterised-function-(DUF1794)	unknown	unknown	gnl\|CDD\|378046
LR134442.1\|VEH91873.1\|2401275_2401476_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH91847.1\|2388703_2389462_-\|conserved-hypothetical-integral-membrane-protein	unknown	unknown	gnl\|CDD\|376842
LR134442.1\|VEH91859.1\|2394802_2395768_-\|putative-global-regulator	unknown	unknown	gnl\|CDD\|223431
LR134442.1\|VEH91853.1\|2391695_2391875_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH91867.1\|2397594_2398239_+\|Transcriptional-regulatory-protein-YycF	unknown	unknown	gnl\|CDD\|223816
LR134442.1\|VEH91875.1\|2401587_2402646_-\|Ribose-operon-repressor	unknown	unknown	gnl\|CDD\|224525
LR134442.1\|VEH91881.1\|2406146_2407001_+\|Transketolase-2	unknown	unknown	gnl\|CDD\|238970
LR134442.1\|VEH91883.1\|2407002_2407959_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|226467
LR134442.1\|VEH91855.1\|2391888_2392434_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH91845.1\|2386173_2388078_-\|Methylmalonyl-CoA-mutase-small-subunit	unknown	unknown	gnl\|CDD\|273191
LR134442.1\|VEH91877.1\|2403486_2405049_+\|Inner-membrane-symporter-yicJ	unknown	unknown	gnl\|CDD\|225121
LR134442.1\|VEH91865.1\|2396902_2397334_+\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH91851.1\|2389964_2391602_-\|Coenzyme-A-disulfide-reductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	1.35836e-135
LR134442.1\|VEH91857.1\|2392779_2394657_+\|Tyrosine-phosphorylated-protein-A	gnl\|CDD\|273597	TIGR01394, GTP-binding_protein_TypA/BipA_homolog, GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors].	0
LR134442.1\|VEH91879.1\|2405045_2406104_+\|L-threonine-3-dehydrogenase	gnl\|CDD\|176196	cd08234, threonine_DH_like, L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.	2.52296e-94
LR134442.1\|VEH91849.1\|2389697_2389976_+\|Copper-sensitive-operon-repressor	gnl\|CDD\|197385	cd10148, CsoR-like_DUF156, Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156. This superfamily includes various transcriptional regulators that respond to stressors including Cu(I), Ni(I), sulfite, and formaldehyde. It includes CsoR (copper-sensitive operon repressor) from Mycobacterium tuberculosis (MtCsoR), Bacillus subtilis (BsCsoR), Thermus thermophilus (TthCsoR), and Staphylococcus aureus (SaCsoR), Mycobacterium tuberculosis RicR (regulated in copper repressor, MtRicR), Escherichia coli RncR (formally known as YohL, nickel and cobalt-sensitive), Alcaligenes xylosoxidans NreA (nickel-sensitive), E. coli FrmR (formally known as YaiN, formaldehyde sensitive), and Staphylococcus aureus CstR (CsoR-like sulfur transferase repressor, NWMN_0026.5, SaCstR). CsoR is Cu(I)-inducible, and regulates the expression of genes involved in copper homeostasis. For example, TthCsoR binds the promoter region of the copZ-csoR-copA operon, and represses expression of these genes, which encode the copper chaperone CopZ, CsoR, and the copper efflux P-type ATPase CopA, respectively. In the presence of excess Cu(I), TthCsoR binds this ion, and is released from the DNA, allowing expression of the downstream genes. TthCsoR also senses other metal ions such as Cu(II), Zn(II), Ag(I), Cd(II) and Ni(II). CsoRs form a homotetramer (dimer of dimers). In the case of MtCsoR, two Cys residues on opposite subunits within each dimer, along with a His residue, bind the Cu(I) ion. These residues are conserved in the majority of members of this superfamily. Exceptions include the functionally uncharacterized Bacillus subtilis YrkD where there is an Asn instead of His (C-N-C), E.coli RcnR where there is a Thr instead of the second Cys (C-H-T), or TthCsoR and E.coli FrmR where there is a His instead of the second Cys and which have an additional N-terminal His (not found in those family members having C-H-C) that may also be involved in metal binding (H-C-H-H). A conserved Tyr and a Glu residue facilitate allosteric regulation of DNA binding. SaCstR regulates genes predicted to function in sulfur metabolism; it is thought that oxidation of the intersubunit Cys pair to a mixture of disulphide and trisulphide linkages by sulfite, results in a reduced affinity of SaCstR for the operator DNA. SaCstR exists as a mixture of oligomeric states, including dimers, tetramers and octamers. The sequence of SaCstR was not available at the time this hierarchy was curated and therefore was not included. Escherichia coli RncR represses expression of the gene encoding the nickel and cobalt-efflux protein RcnA. The gene encoding Alcaligenes xylosoxidans NreA is part of the nre nickel resistance locus located on the pTOM9 plasmid from thisbacteria. Escherichia coli FrmR regulates the formaldehyde degradation frmRAB operon.	2.36961e-26
LR134442.1\|VEH91861.1\|2395787_2396291_-\|Domain-of-uncharacterised-function-(DUF1794)	gnl\|CDD\|378046	pfam08768, DUF1794, Domain of unknown function (DUF1794). This domain forms a beta barrel structure but the function is unknown. The GO annotation for this protein indicates that the protein has a function in nematode larval development and has a positive regulation on growth rate.	1.88942e-60
LR134442.1\|VEH91877.1\|2403486_2405049_+\|Inner-membrane-symporter-yicJ	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	2.83864e-109
LR134442.1\|VEH91847.1\|2388703_2389462_-\|conserved-hypothetical-integral-membrane-protein	gnl\|CDD\|376842	pfam02592, Vut_1, Putative vitamin uptake transporter.	1.40475e-38
LR134442.1\|VEH91859.1\|2394802_2395768_-\|putative-global-regulator	gnl\|CDD\|223431	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].	3.44201e-40
LR134442.1\|VEH91883.1\|2407002_2407959_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	1.62366e-89
LR134442.1\|VEH91867.1\|2397594_2398239_+\|Transcriptional-regulatory-protein-YycF	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.65473e-44
LR134442.1\|VEH91875.1\|2401587_2402646_-\|Ribose-operon-repressor	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.65406e-83
LR134442.1\|VEH91845.1\|2386173_2388078_-\|Methylmalonyl-CoA-mutase-small-subunit	gnl\|CDD\|273191	TIGR00642, mmCoA_mut_beta, methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved. [Central intermediary metabolism, Other].	0
LR134442.1\|VEH91881.1\|2406146_2407001_+\|Transketolase-2	gnl\|CDD\|238970	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.	4.86477e-106
LR134442.1\|VEH91865.1\|2396902_2397334_+\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	3.88309e-77

>LR134442.1|VEH91863.1|2396294_2396534_-|Uncharacterised-protein
MPRPAGEPTGPIVSPGRGWSQRPRLARVAMLDVILLLLAVAVVAAAAIALLSVVVRWLRRREAREVRRHRPLTRTDRRR
>LR134442.1|VEH91861.1|2395787_2396291_-|Domain-of-uncharacterised-function-(DUF1794)
MPFQIPEDLNPALMPLAWLIGRWAGNGHGTWPDRGDFEFGQQVEFTTNGEPYLHYISQTYVADENGRPIAPLSMETGFWRPQADGGVEVVLSHPDGWSEVWNGRIDGAKIELVTDVVARTKNAALEYTGGQRLYGNVESDLLWTFDRATTDVSLQPYMWARLQRRTM
>LR134442.1|VEH91859.1|2394802_2395768_-|putative-global-regulator
MSAVTVPEGPDEGLLWHRGRPLAEQRAIVEGKAVAELGRREVVSVTGPARHEWLHSLTTGVFTDLQAGSGLDALVLSPTGHITHVLHAVEDGERLWMFGQAGSGGSLGDYLESMVFRTRVSVERHPGAHVFWAGSNAGDVPAGLAPDLAAPFGDGFVRIAASGIADEDERAAGTWAWEALRIAAGIPRIGVDTDERTLPNELGLYATALDKGCYCGQETVARVHNVGHPPRRMVRLLLDGMRSQLPATGAELLLDGTPVGFIGASAQHWQDGPIGLGLIKRTVPVDAQLVVDGVDAAQEVLVDPDVGLHVKAPAGLRRRLL
>LR134442.1|VEH91857.1|2392779_2394657_+|Tyrosine-phosphorylated-protein-A
MPVRQDLRNLAIVAHVDHGKTTLVDAMLWQSGAFREGSDVENRVMDSMDLEREKGITILAKNTAIRHTMTDGRELTLNIIDTPGHADFGGEVERGLEMVDGVILLVDASEGPLPQTRFVLRKALDKKLPIILVVNKVDRPDARIDEVVDETYELFMDLLDDEDAGGLDFPIAYCAAKAGRASLTKPADGALPDSRDLQPLFDLIESSIPAPAYTEDAPLQAHVTNLDSSPYLGRLALCRVVEGTVRRGQNVAWCRRDGSVQTVRLSELLMTEALDRVSVEEAGPGDIIAIAGIPEITIGETICDPADPRPLPLIHVDEPSLSMTIGINTSPLAGRSGTQLTARLVKNRLDAELIGNVSIRVLDTDRPDAWEVQGRGELQLAVLVEMMRREGFELTVGKPEVVTRRDENGTLLEPTDRLTIDVPEEFLGTVTEMMGTRKGTMDQMINHGSGWVRMEYVVPSRGLIGFRTEFLTATRGTGIMNHVFEGFTPWVGEMRSRPTGSLVADRQGTVSSYALFNLQERGELFVAPGDEVYEGMVVGENSRPDEMDVNPTKEKHLTNVRSSTGEELERLIPPRRMSLEQSLEFCAADECLEVTPDVVRVRKVVLDARDRAKARIRNRNQNANA
>LR134442.1|VEH91855.1|2391888_2392434_-|Uncharacterised-protein
MDRDGTVSDGLKWARATVFADTVWRALRRLLLGAAAVLFAAALASPWSVEANWPYEVRLIEWGMLNRSGDGGWPQALSVLLALTVVALWCLAASPTERQRGWVAALVNVLGVAGVAGAVLTTLTTKTIYDASDQRFVGPAVVLMTLSLVCSWVCAGCLREEPELTGRAVSGSGPARPPAGP
>LR134442.1|VEH91853.1|2391695_2391875_+|Uncharacterised-protein
MCRPVTCKICGKTTWAGCGQHIAQVKAQVPPQRWCDGRHTAEETAAARKPGLLGRLLGR
>LR134442.1|VEH91851.1|2389964_2391602_-|Coenzyme-A-disulfide-reductase
MRIIIVGGVAGGMSAATRLRRLDETAQITVIERSGHVSFANCGLPYYLGGVIEERSELLLQTPQSLASRFGIDVRVRHEAIGVDPAARSLTVRELDTGETCELLYDALLLSPGARPVRPPIPGIERALSLRTVEDVDAIAAAAERASTAVVIGGGFIGVELVENLARRGLAVTLVEGADQVLAPLDPEMAELVHDRLRASGVRVLLGRTAAAIESSQVVLDDGSAEQADLVVAAIGVRPDSQLAAEAGCALGSQGGILVDEHFATSVPGIWAVGDAVQKTDAIDGSGAMVALAQTANLQGRSVADAIVGRPAADRPVRGSFIVGVLGLQVAATGWNERRARAAGRALRIIHTHPGDHAGYYPGAEQMHLKLVVDADTDAILGAQGVGASGVDKRIDVIATAMAGGLRAAELGRLELAYAPQFSSAKDPVNMLGFIDENLRDGLAENLQWHELDAAVAAGATVLDVRSPAEHAQAAIPGSLLIPLDELRDRLDELPDGDIVVYCAVGLRGYLACRILAQHGRRARNLDGGLATWVPGSAVMRPSGQ
>LR134442.1|VEH91849.1|2389697_2389976_+|Copper-sensitive-operon-repressor
MSGTAPTNALADDDLAAVVRRLQRAQGQLGGIIRMIQEGRDCKDVVTQIAAVSKAVDRAGFAVIAAGLRHCLADPQSGPDPAEMERLFLSLA
>LR134442.1|VEH91847.1|2388703_2389462_-|conserved-hypothetical-integral-membrane-protein
MEPRSAQRPACGSGAPGRSHRAGPRGTGPAYASTGARFYPVILAVMAVVIVLSGIGGSKAVQFGPILTDGAFFIFPFSYILGDSITEVYGPRAARQAITTGFVVNIVSSLIYWVIIALPGLSDGSNAARDAAFRLALGPVWQVVLAGVVGFAGGQSANSFIMWLGKRRHHEKGLYGRLISSTGVGEFIDTLLFCLIASRAIGLTTIGQIVNYTIIGYLYKITLQYALMPLTGRIIKALKKREPSYQAALAAA
>LR134442.1|VEH91845.1|2386173_2388078_-|Methylmalonyl-CoA-mutase-small-subunit
MSNTESGATAAEEATPAQLSLAGDFPAVTEEQWEIEVAKVLNRGRPPEKQLSVEQCMKRLTVHTVDGIDIKPMYRRDDVPGPLGYPGVAPFTRGTTVRNGEADAWDVRALHEDPDTDFTNKAILTDLERGVTSIWLRTGSDAISPADVATVLSGVLLEMAKVEISSREDQQGAAEALLAVYEASDKPKDNLAFNLGLDPIGLAALQGTTADLSGLGAWVERIAAYPKASAITVDSTIYHNAGAGDVAELAWALATGVEYVRALVEQGVDVNEAFKTIEFRVTATHDQFLTIARLRALRTCWQRVGEVFGVDEANRGARQNAVTSWRELTREDPYVNILRGTIATFAASVGGAESITTLPFCAAFGLPDDFVRRIARNTGIILAEEVNIGRVNDPGGGSFYVESLTDTLAKAGWAEFQKTEAAGGMAAALAGGHVAEVLAECATERAKRLAHRTQPITAVSEYPMLDARSVEVKPLPEAPALGGLEWHRDSEVFEKLVDRSAANGEKPKVFLACLGTRRDFGGREGFSAPVWHVGGIETPEVEGGTVEEIVAAFKDSGAQVVDLCSSAKVYAEQGVEVAKALRGAGAKAVYLSGAYKELGISDDEAAEIFDGRLFMGMDVVDMLTRTLDVMGVTE
>LR134442.1|VEH91865.1|2396902_2397334_+|D-tyrosyl-tRNA(Tyr)-deacylase
MRVVLQRALSASVSVDGEVVGALPRPGLVALVGVTHEDTADTAAAMAAKTFTLRILEGERSASDLDAPVLVVSQFTLYASTRKGRRPSWSAAAPRPVSEPIVEAYVAALRAAGAHVETGRFGAHMEVALVNDGPVTILLDSDD
>LR134442.1|VEH91867.1|2397594_2398239_+|Transcriptional-regulatory-protein-YycF
MAHALFVCPAGLIPPENLALLQYELIAVANGAEALNNLELADAVIVDARAELDAARTSCQVITAASGEKPVLLLIAPESLPVVSPEWGVDDFILEGARPAEWEARLRLLIAPHEHETLSSGAIVIDESAYTAAVGGEQLDLTYTEFELLKFLVAHPGLVLSREELLKHVWGYDYYGGTRTVDVHVRRLRAKLGTEHDQCISTVRNVGYRFDPRA
>LR134442.1|VEH91869.1|2398332_2399565_+|Uncharacterised-protein
MHDIALTPTGRESLETMHRRIVQLGLLDDRPERVGWISCEAGTCTGTVLTDEEELRGGPLRYRTHSAVGLASLPDGYYTMRITRRGLHIQQWDAEDHLRRALQVVREAGRGSYAVCFVSAVDGDAAQPLGNGFKDMPVESIAHLRRLRALAADPPRVFVVEARMLRTRLITDKPIGDLPVSVDTSLVALYQQEFTGVDAVRRDRAAFYSGSGLEPLGAARFDDRWPRLSRNTWPAGPELWQLFGAPDGTTIILSEGLADPNPDDGLRVELFAEADARITPGSELEDYWIFHTLRRVANFAINGGLVYERITRRGFFVMQLTDGPDELRGPDGRVNVLLGAPSEWIAGEQVWGALEVALVSVTLIDPQLVAELQAGESRDAAWQELLETGRPALGNNALRVSGQTPRPAHD
>LR134442.1|VEH91871.1|2399864_2400317_-|Uncharacterised-protein
MDFDVLDFARLLSRLPAHLPISDDYDGFVDGEYRYSKPWYASQRQHMVAWFRGQATTGAGAYTRNTPNHSARRAYNRLLDAGSRLWTNEALGQDSDLVRRAAEAAALEREYRKRCRIVREHLPWDQVARLAEARSTLGGRIRALGKRFRR
>LR134442.1|VEH91873.1|2401275_2401476_+|Uncharacterised-protein
MILDDRSPMVNLGQGKHTALTSVSPIVTNEERCIPTKSVKFITTLHREELNPFLVEHVSHIWLSWD
>LR134442.1|VEH91875.1|2401587_2402646_-|Ribose-operon-repressor
MAERKERRAPTRADVARLAGTSLATVSYVINGGPKKVSAETGDKVRRAISELGYRPDPIARQLRGSESSVLGLLVPNLRGPFFVDLAEEIERQVRSRGKLLLIASTNFDPETEEELVADFLSRRTAAILSIGPTPRLLPESAEHGTFHGALTVMPGGRMEQAVSIGIDQREAARLAVQHLVDHGCRSVAAIFGPEGHTVFRPRMRGWRDVTGLDDTQSQQLSRWADYSFGGGYRAAVELVRDGAVKPDGLFVSNDTQAVGALAALSDLRVQVPEDIAVVSIDAARISGFTTPALTTVEQPTGLLAYAALDVVEGLTPAGPRTVTVPHRLVIRDSCGGDGGIEPSRLAKYHKS
>LR134442.1|VEH91877.1|2403486_2405049_+|Inner-membrane-symporter-yicJ
MTEKSPPSPRPDTSSQWEKSGPEPGYYKLRGKEIFGYSLVDFAMNLVFQAIMMYITFFYTDIFGLRPSHIAVMFLVSRLWDAVNDPLMGWIVERANPRHGKYKSWIMYAAVPFGLAAVLTYTTPGFSYPAKLVWAYATYNLLNMGYTLIIQPYISLATVMTADPRQRTRLQSIRMAFAQSGGVIVALTIPLLSDWLAKSMSLQASYQVTVALMSIIMVAILLFSCTQVTERIKVVSHEDPPGIGQIIHQATHNKYVVLMFLLFFGVYGFNTIQSASGVYYMTYFAMRPDLVAWFSMMNVLPSVVGVPIVPWLQRFFHKKGTTMLGLVVGALGAVLLAFLSPSSIAMMLTARGISSFGYGIMMGALWSIITDPVEYGDLNTGRRLTAIVMTLIGLGLKFSMLLGGVVPTWILDIVKYQPGVEQQTSESLAGIHFMSSWLPAIILLVTLLVFGLFYDLTEEKIVDIQHRIAVRDGQIPPVGEEEEALAAEGVRLREAAQASQHPPASRAASAMTPHIGKESS
>LR134442.1|VEH91879.1|2405045_2406104_+|L-threonine-3-dehydrogenase
MKVAHVTKIGSLRDPDPATRGAVGVLDIPEHPLGDEDVRIKVAYCSICGSDPHLVEGIFGTDVPIGLGHELSGVITELGPKATRKGLKVGDRVAGNFLRFCGTCYYCQNGQQQFCASSGEYNRPGMAENIVWHESQAYKLPDDVPLRKGALLEPTSVAVRIADKAAPRIGERVVICGGGPIGLLSLQVLKMMGATDLTLIEPIADRRELAEQYGADHTIDPTSDDVAAEAMKLTGGLGYDIVIDCSGSVHGIQPLPEIAAYGARLIFGAMYPGDYEFGLNIHKYCYLKELTITGLFVSPYAYPRAAQILPRMNLDALTEKVFELDDTVAAFEAQVSGRYPKILIRCNQIEGE
>LR134442.1|VEH91881.1|2406146_2407001_+|Transketolase-2
MIECQNITVAELEDRAYELKQKLLKLCGTYNGSVHIGGDLSVADVLTALFQYGLRIDPADIQNPERDRFILSKGHAAVCMYIAMAIRGFFDYDEIVRTYGQLDSAYGMHPCKVQLPGVEASTGSLGHGLPLAVGMALHARQQKAKHRVFTVMGDGETGEGSVWEAAIAGRSRELGNLVAVIDRNHQLMTSMSEDRIVLEPYADKWRAFGWDVMEVDGHDMSALVEALDSLPETTSTRPTAIICQTVKGKGVDFMERNIGWHAGSLGAEDLQRALDSLATTRKDN
>LR134442.1|VEH91883.1|2407002_2407959_+|1-deoxy-D-xylulose-5-phosphate-synthase
MPETMNFDVVISSRSVTGQTLADLGDTYPNLWAVTPDICATLREFMDRHPDRFVDVGLSEQAAVGIGAGLAYEGNIVVVSGMLPFLSMRSMEQVRTDVCYPNLPVRIIGTHGGLQGNGGSTHYALEDLGLMSSLVNMTVISISDPMMVKEVLEQSMTYPGPMYIRTGVGKKDTVIYDFDERSITIGKAITALDGDQITLFTHGEMVVQAIKAAREVAKEGISVRVVDMFTIKPIDVESIRTNAAETGRFVVLEDHLKMSGLAQAIANVLADEMIHLSWFKRLGIPQVYAGFGEDEQLRDKHGYGLQHTIDALREAAEH

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Crispr_ID: LR134442_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_13

2810935-2811024

Orphan

Consensus_repeat	Method
GTGCGTCAGTTCACAAGGACCGCAGGCG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of LR134442_13

>merge|LR134442|13|2810935-2811024|CRISPRCasFinder
GTGCGTCAGTTCACAAGGACCGCAGGCGCTCCTCGTCCGCCTCTGATTGGCCTGCGGTTTTCGTGCGTCAGTTCGCAAGGACCGCAGGCG

>LR134442|13|13|2810935-2811024|CRISPRCasFinder
GTGCGTCAGTTCACAAGGACCGCAGGCG	CTCCTCGTCCGCCTCTGATTGGCCTGCGGTTTTC
GTGCGTCAGTTCGCAAGGACCGCAGGCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH92437.1\|2817684_2818905_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|283431
LR134442.1\|VEH92417.1\|2809451_2810453_+\|Fluoroquinolones-export-permease-protein-Rv2687c/MT2761	unknown	unknown	gnl\|CDD\|223912
LR134442.1\|VEH92409.1\|2804817_2805750_+\|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA	unknown	unknown	gnl\|CDD\|224054
LR134442.1\|VEH92403.1\|2802325_2803078_-\|LemA-family	unknown	unknown	gnl\|CDD\|377192
LR134442.1\|VEH92407.1\|2803963_2804821_+\|Transcriptional-regulator,-effector-binding-domain/component	unknown	unknown	gnl\|CDD\|133378
LR134442.1\|VEH92415.1\|2808492_2809341_+\|Fluoroquinolones-export-ATP-binding-protein-Rv2688c/MT2762	unknown	unknown	gnl\|CDD\|224054
LR134442.1\|VEH92411.1\|2805746_2807420_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|226089
LR134442.1\|VEH92433.1\|2816644_2817031_+\|Predicted-enzyme-related-to-lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|319922
LR134442.1\|VEH92435.1\|2817114_2817579_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH92401.1\|2801604_2802300_+\|SNARE-associated-Golgi-protein	unknown	unknown	gnl\|CDD\|182775
LR134442.1\|VEH92425.1\|2811793_2813041_-\|Tetracycline-resistance-protein,-class-C	unknown	unknown	gnl\|CDD\|340888
LR134442.1\|VEH92431.1\|2815524_2816553_-\|HTH-domain	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
LR134442.1\|VEH92413.1\|2807833_2808496_+\|mycofactocin-system-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
LR134442.1\|VEH92421.1\|2811106_2811364_+\|Putative-antitoxin-VapB5	unknown	unknown	gnl\|CDD\|226603
LR134442.1\|VEH92427.1\|2813498_2814224_-\|Bacterial-regulatory-proteins,-tetR-family	unknown	unknown	gnl\|CDD\|366102
LR134442.1\|VEH92423.1\|2811360_2811756_+\|Probable-ribonuclease-VapC47	unknown	unknown	gnl\|CDD\|350222
LR134442.1\|VEH92419.1\|2810404_2810896_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH92439.1\|2818901_2821220_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH92429.1\|2814393_2815473_-\|Inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
LR134442.1\|VEH92405.1\|2803079_2803622_-\|Orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH92437.1\|2817684_2818905_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|283431	pfam05762, VWA_CoxE, VWA domain containing CoxE-like protein. This family is annotated by SMART as containing a VWA (von Willebrand factor type A) domain. The exact function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon is several bacteria.	3.95613e-30
LR134442.1\|VEH92417.1\|2809451_2810453_+\|Fluoroquinolones-export-permease-protein-Rv2687c/MT2761	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	0.00120471
LR134442.1\|VEH92409.1\|2804817_2805750_+\|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.98791e-86
LR134442.1\|VEH92403.1\|2802325_2803078_-\|LemA-family	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	1.104e-72
LR134442.1\|VEH92407.1\|2803963_2804821_+\|Transcriptional-regulator,-effector-binding-domain/component	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	5.66758e-20
LR134442.1\|VEH92415.1\|2808492_2809341_+\|Fluoroquinolones-export-ATP-binding-protein-Rv2688c/MT2762	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.81246e-76
LR134442.1\|VEH92411.1\|2805746_2807420_+\|Uncharacterised-protein	gnl\|CDD\|226089	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane].	4.65456e-73
LR134442.1\|VEH92433.1\|2816644_2817031_+\|Predicted-enzyme-related-to-lactoylglutathione-lyase	gnl\|CDD\|319922	cd07261, EhpR_like, phenazine resistance protein, EhpR. Phenazine resistance protein (EhpR) in Enterobacter agglomerans confers resistance by binding D-alanyl-griseoluteic acid and acting as a chaperone involved in exporting the antibiotic rather than by altering it chemically. EhpR is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.	8.97793e-47
LR134442.1\|VEH92401.1\|2801604_2802300_+\|SNARE-associated-Golgi-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	5.50529e-41
LR134442.1\|VEH92425.1\|2811793_2813041_-\|Tetracycline-resistance-protein,-class-C	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.02095e-31
LR134442.1\|VEH92431.1\|2815524_2816553_-\|HTH-domain	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	4.31043e-42
LR134442.1\|VEH92413.1\|2807833_2808496_+\|mycofactocin-system-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.3101e-12
LR134442.1\|VEH92421.1\|2811106_2811364_+\|Putative-antitoxin-VapB5	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	3.33528e-08
LR134442.1\|VEH92423.1\|2811360_2811756_+\|Probable-ribonuclease-VapC47	gnl\|CDD\|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	6.72652e-21
LR134442.1\|VEH92427.1\|2813498_2814224_-\|Bacterial-regulatory-proteins,-tetR-family	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.94747e-05
LR134442.1\|VEH92429.1\|2814393_2815473_-\|Inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
LR134442.1\|VEH92405.1\|2803079_2803622_-\|Orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	1.24377e-57

>LR134442.1|VEH92419.1|2810404_2810896_+|Uncharacterised-protein
MLLGEKEDRVWDALAVTPVSLRGYLAWRAVGATLGAGCACTVCLWLGGLGTMGIAQVCCVALAAAPLAGATAMALAAWAADTLRGFAAVKLSFVVLVLPAVVPGSGIGQWLLAPVPSWWPAQAYRELAAGGALTPVWVAGSVLVCGAITAVALRRAARHRIAH
>LR134442.1|VEH92417.1|2809451_2810453_+|Fluoroquinolones-export-permease-protein-Rv2687c/MT2761
MRAAMRRGAATLLLDLRRQAQEGFWLVALLAGLIVAALLGALATDLHRWWPMIVLGELTITSFYFAAVQVLRERNEGTLCARAVSPLGAGEYLAALVASLTLLALAEVGVLVLVVHGPALAWAALAAGVVLVSCIYVLYGVVAVAGYESIGAFLLPSGVWTLVLGLPLLPLLGAPGGWWLWLHPLQPAIVLIQVAFGAEPPSASVPCVALGAAWCAGLVALARRRLRRAVVLVGGERMRPRTVLALLPADLARLARDELLVWLPPCPSSWPWRHGSARHLSFRPSAFARSSHGSGPPVSTWRPSGSSSRCSSGRSSASCCWARRRTGCGMPWR
>LR134442.1|VEH92415.1|2808492_2809341_+|Fluoroquinolones-export-ATP-binding-protein-Rv2688c/MT2762
MTEAICAHGLGFTYHGASRPALADVDLMVATGEVVGLLGPSGAGKSTLQRVLTGLLTGYRGSARVLGREISRWGREVYERIGVAFETPIAFGRLTLRENLAYTARLYVGSTREPEELLDAVDLAEDADMRAAHMSKGMGVRFNVARALLHEPELIFLDEPTAGLDPVRAQRMARLIAAERVRGHTLVITTHDMDLAHRACDRVGFIVEGRLVELGEPDTLCRRHGTREVHVAWDGGEALFPLDGLAENAGFHEVLRTRDVRALHSREADLAEVFAAVTGREL
>LR134442.1|VEH92413.1|2807833_2808496_+|mycofactocin-system-transcriptional-regulator
MPRPTFFNLPEDKRSRVLAALKDEFATRTYSQASVDRITAAAGVSKGSFYQYFDDKQDAYTHLVRELMSARLGVAGSPSPEEPFEEVLTALVLGSHDFHRSDPQGWAVLARALSDDAPAVLGSDEALSEGVRRWAVTAIATGQSTGELRDDVDPGTAAWMIERVLLGVPQYVVARFGVSPEGAATDGSAFDSPEIASVAHDVVALLTAALTAMPRGGGGR
>LR134442.1|VEH92411.1|2805746_2807420_+|Uncharacterised-protein
MSATMSPARAARGAEPTRPATGPGGAGPLLGLGPSLRLLVRRLRVQVLAWTLPLWLLLAATPPAYEDVYPSLQERELLVESMRDTAGTRLLYGVLPLPGRIGQLVQWETGTYLLICGALMAILLTCRAMRADEDDGLVEVQRGSGVGHLVPFVAPVLMVWGTVALLAGGAGLVLTVLTRVVAELTVSGAWALAGAIAVTGWAFAALAALSCQLCRQAGSARGLALAALGCCFALRVLADESGAGWLRWFTPLAWRDLARPYSDDRVWPLVVCAAAAVLLAAVAGGLFVRREYLGGYLPDRSSSRRRWRLGGYADLQARLALRSAVAWSVTVAATSVLFGAMAGSITGLFGPDSATSAYVGKMASGSPVEQFMGLLTIMTVLLVAVAGVQRVTALAADERAGFVEFEVSVGTSRTRMFMTQAGVAVVESVVLLALSGGVLAAVTGTQLTDDHAVGRAFVFTVSQLPGVLAAIGVALALVGLVPRLSALVWAVVGWSVFAQFFGALVELPDWAQELSVLGHHLDVVGDPDWGPLAVQAVVGLAGMLVGLAAYRRRDLAR
>LR134442.1|VEH92409.1|2804817_2805750_+|Daunorubicin/doxorubicin-resistance-ATP-binding-protein-DrrA
MTTHTDTAPTMTDDSPVRVRSLVKRFGRFTALDGLDLEVAAGQVHGFLGPNGAGKSTTIRVLLGLYRPDGGSVRVLGRDPSREAAAINREISYVPGDVALWPNLTGGQALDALAGLRGRRDRAREEELIERFDLDPGKKVRTYSKGNRQKVALVAALAAPTRLLVLDEPTSGLDPLMERAFTEEIARAAEQGRTVLLSSHILAEVQHLCSAVTIIKQGRVVEQGDLETLRRLARTQIEIRADGQTLGRVAAGLDERDVPADRTDELLSVQVESALVPRVMEVVAACRVTDVSCGPASLEDLFLRHYEEAR
>LR134442.1|VEH92407.1|2803963_2804821_+|Transcriptional-regulator,-effector-binding-domain/component
MRIKEMADLAGTTPRAVRHYHQLGLLDVPPTVRGRREYGVEHLARLLRIRWLAGGGLPLPRVADMLAADESGTDRDSVLHDLRAARRSIDEQQRALREQAERIDGLIAQVADGGTLSPLPTVLARFYDDLEDRIRASERAGSDGGLQVLRTERRLMMILASRGMVPDSAGPFVEELDDAERDECVRQVIAFARLDETDEAGALALAQDTWELTLRHKEQALAVMDDLPGGPFGRALWRLAEVLAGISYSQNAQRIFTARLFELMLADPDLAATIRRSAGEEHPVL
>LR134442.1|VEH92405.1|2803079_2803622_-|Orotate-phosphoribosyltransferase
MTDREELLRHIVDEAVVSGHVVLSSGKEADYYIDMRRITLSGVAAPLVGRVMLDLVKGWDFDVVGGLTMGADPVAAAILHAAAAAGRPVDACVVRKESKTHGLHKRIEGPGVEGRRVLVVEDTSTTGNSALTAARALREAGATVVGVADIVDRSGRVVSQAMAKAGLEYRFAYSAKDLGL
>LR134442.1|VEH92403.1|2802325_2803078_-|LemA-family
MLIGIIIVLVVLLALAGGLFVGPYNRLVALRNKLQEAWRQVDVELNRRYDLIPSLVETVKGYATHEHNTLSDIIALRNQARSLDTTAAPSAERVAVESRLSGAVGGLIATAEAYPELKADAGFRQLVSELSQTEDRIANSRRYYNAVVGDYNTKVESFPSNIVANMFHFTQAAYFQLDDPTMRANPGVDFSQLGYGSGVQGSQPQTPGQITPGQQPQAPGFQAPGQQFPAPQPQADPRFQQPGQRPPAQQ
>LR134442.1|VEH92401.1|2801604_2802300_+|SNARE-associated-Golgi-protein
MTLLTLVPMMPSWLDPAAIIHALGNGALWGVCLILFIECAIFPVLPGDSLLFTVGTFIAMNPPSITFGSMSKPLVYVVACAIMTVFAIGGNIAGYFIGKTIAPWLFKPREGFMGRIFSPKHLADTHAFFEKYGSKALVLGRFVPFVRTFVTMVAGAAGMSFRHFISWTAIGGVIWVWGITLVGYLLGNVKFIGDHIDLILVLIVLVSVVPMVVEWWNGKRKAAKQAGAAVH
>LR134442.1|VEH92421.1|2811106_2811364_+|Putative-antitoxin-VapB5
MTTIPHRELRNDSAAILRRVEAGESFIVTNNGRAVAELIPITRDRLALLRQQGATRPATPVDFSALRRIRGLRSKDVLADLRGES
>LR134442.1|VEH92423.1|2811360_2811756_+|Probable-ribonuclease-VapC47
MTICYLDTSAALKLLIEEAESESLGSWLTGEVTDGMTLCSSFLLHVELHCAARRRHRLDEQAVASLLAGIELIDISREHLLAAARDTTGLRAADAIHLAVALDVRSDLLLTYDQEMQNAAQQRALTVVAPV
>LR134442.1|VEH92425.1|2811793_2813041_-|Tetracycline-resistance-protein,-class-C
MPASREIQSGKSSPQIRIVLSAVFLAYLGQTTLNPVIAPLSREVGLAEWQIGLTISVAAVMVVLTSQPWGRRSQSWGRKPVLAAALGGCTAAMVLFAVIAALGMRGALGGTPPFCLFVLARGLIFGTALAAILPTAQAYVADITTDEEERVRGMAGIGAAQGTASIAGALVGGLLSGISLMVSVDMVPVFLLLGLLVVTLGMRRETRTELVAEPARVRPLDSRVWPFLVAGFGMFTAMGLIQVVTGFLVQDRLRLDANTTGLVSGGALLAAGVGMVFAQSVIVPRSKWSPPTLLRVGTGTGAVGFALLAVDGGAALLIVAVTVIGAGIGIGMPGYTAGPTLRMSREEQGGLAGLVGATNGLTYVVSPTAGTAMYGRSPVLPIVVGGAILALVFVFALVHRSFRRAPAAAPAVTAK
>LR134442.1|VEH92427.1|2813498_2814224_-|Bacterial-regulatory-proteins,-tetR-family
MADGRADAGGAQGRRDSYHAGLTTQAVVDAAVELSGQRGLTVWSLRDLAQELGVAPSVIYHHAGGRETLNRLVAERVLGMVGLPTRIMPWRQWFREALFPIRPVLRSYPGTARWVLLHGPVLPDLVPVIDAGIASLRHDGFGQDAAIAYASLVNTALMMVAAADDRVLYEGDAPRDHASLIRGIEELSADSTGISLMTRDLLTQFTGSPERIAAAQDRYYRFVLERIMDGLELRLEAGGSL
>LR134442.1|VEH92429.1|2814393_2815473_-|Inositol-3-phosphate-synthase
MNKVRVAIVGVGNCASSLVQGVTHYADAKPTDTVGGLMHVQFGDYHVSDIEFVAAFDVDAAKVGLDLADAIGASENNTITIAEVAPTGVTVQRGVTLDGFGKYYRETVTESAEPPVDVVQALKDARAEVVVSYLPVGSEEADKFYAQCAIDAGCAFVNCLPVFIASDPDWAQKFTDAGLPIIGDDIKSQIGATITHRVLARLFEERGITLDRTYQLNVGGNMDFKNMLERERLASKRISKTQAVTSNVSTTFDEKDIHIGPSDYVGWLDDRKFAFVRLEGRNFGGAPVSLEYKLEVWDSPNSAGVVIDAVRAAKIGLDRGIGGPLLSPSSFFMKSPPQQRPDEEAMDSTEDFIAGRVER
>LR134442.1|VEH92431.1|2815524_2816553_-|HTH-domain
MRADRLLSMLWLLRAHGGLSTAELARRLEVSRRTVLRDVEALSAAGVPVWCERGPHGGVRLTPGHRLDVTALNSEESRALFASATMWGASSLGLGDALASALRKLLAAVPDEHRAGSAEISSRVLIDPQGWLPQPDSEHTGAVFRTIQEAVLARHRLRIVRRRRTGTMTGDTVDPHGLVAAGHSWYLCSSLDGELLFTRISRIAEAEITDEACPDDDGFDLADAWRQRREDFLARFDALTATAWVRDTRVRDVHEWALHASEAESHGAPPDDRSWSFLELGFMDRLHAVTVLLRLGSDVCVLGPDELRRELIDRLDRTRALYPAGSGTDSDRGGMCSPPADG
>LR134442.1|VEH92433.1|2816644_2817031_+|Predicted-enzyme-related-to-lactoylglutathione-lyase
MTVFVPNSIVLYVADIERSAAFYSELLGAGPQETFEGFAVFALAGSMTLCLQAADQIDPAAEAHVGGSELSLSDVDRADVDCLHAEWAARGVPMLLEPTDLVFGYTFVAADPDGHRLRVCATDTSTLE
>LR134442.1|VEH92435.1|2817114_2817579_-|Uncharacterised-protein
MCAESVGGEQPTPDDAGCASEGGPQDHEARAIRSQPARAAASSPGDAPLSEKRGLHAWGLGATRSAARSLDEPAARQIYSPRRVMPAPRRVRTGTVPEWLWASHPRRALCEVRAYYRPRRLSPDAPADLSLLGPSSLRLWFIPIPGLPRRWSRG
>LR134442.1|VEH92437.1|2817684_2818905_-|Uncharacterized-protein-conserved-in-bacteria
MSTAPAAGDQQIGPGTISAEQRWRLMLGTDSTGGARRHEVLTVEQRAMDRALARLYDVGDEDGQAGRRRAGRGGLESAMPSVAAWLGDIRRYFPNRVVQVMQNDAIERFGLAAMLAQPEILENLEPDVHLVATLARLSSVIPEESKQTARQVVSTVAEQVAERIANRMRQSVRGALDRASRTARPRPSDIDWGRTIAANLKNYLPEQRTIVPERLVGYGRRHRGVQREFVICLDQSGSMATSVVYASIMAGVMASISALRTHLVAYSTDIADLTSQLSDPVDVIFGAQLGGGTDTAPALEYCRRSITRGSDAVVILISDLYDARPERMIDQAQRIRADGATMIALLALSDDGVPSYNRSVAAELAGLGVPAFGCTPDAFPELIAAAIEGEDLGHWAEQRSADEAGA
>LR134442.1|VEH92439.1|2818901_2821220_-|Uncharacterised-protein
MSSAGAAAPPPVRVFGVRHHGPGSARALAAALDAYAPDCVLIEGPADADKLIEWVADPAMRPPVALLAWQTDRPANAAFWPMAVFSPEWQALGWAARNGAETHFMDLPAAMTLAATGRQDPDEPGADDTQGQDPSGGEPPEADADRHTGDPEGLAGEAPVEDPRAGRRTDPIAELARIAGYDDPEAWWEDAVELRSTGDPFDELTEAIGLLREATPETDPRTLRREAHMRKVLRAARRRGHERVAVVCGAWHAPALAGPAPTLKADNALLKGLPKVKTALTWVPWTHGRLAAVSGYGAGIDSPGWYHHLFTAPDEPVARWFTLVARSMREHDLPVSSAHVIEAARLADALAALRGRPQPGLDEVNEATWSVLCAGSSVQADLVTREVVVGQALGEVPPGVPMVPLDADLRATARSLRLTMSATERTITLDLRKPNDLAKSRLLRRLAILGIDWGKQGTARGTGTFKEAWQLQWDPEFSVAVIEAAAFGNTVAAAAGNALLARTSTLPEVTAAVEQGLLADLGEVLPQLLGTLDKRAAGEPDVLHLLQSIPALARSMRYGDVRGTDTQALGTVAQSVLARACAGLPAAASGTSEDAAAALRRAIDDVQGVVALLDERSGALWQDTLRSLLASRTLPGLLSGRIVRLLLDAGELDADEAARRLGRALSPGAEPERQAHWIEGFLAGSALLLLEDRQLLAVIDAWAAGIPDEAFRRVLPALRRAFGTWSTAERRMLAGRVAHLGDPQTHAAEAAEDLLHAGPVLETVGAILGGGR

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Crispr_ID: LR134442_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_14

2953113-2954159

Orphan

Consensus_repeat	Method
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	PILER-CR
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CRISPRCasFinder
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CRT

14 spacers

The CRISPR arrays of LR134442_14

>merge|LR134442|14|2953113-2954159|PILER-CR,CRISPRCasFinder,CRT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCATGTCGAAGGAGATGCGATAAGTTTCGGCGTCTGCGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCCTACCACGCAGTAGCCTAGATTCTCAGCAAGTCAGGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCCATTCCGGCGCTTGTCAGGAGCCCGGTGATCGTGTGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCTCCCTGATCGTGGCTACGCGCAGCTGCGCGAGCACGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCATGTACATCTCCGACGAGTTGGAGGGACGGTGAATCGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCAGCGTCTGGATACGCTCCATCGCCTCGCGGATGTCAAGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCACGTCGGTGTCCTCCGAAGCCGACGTTTGCAACACGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCCTGCACACCTTGTCCGCGCCGTCCCTGACGGCACGACGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCCGGTATAGGGTCGCGTCGTGTGCTTCAACCTCCTTGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCGTCAGCCATTGGAGCTGGGCGAAGTTCATCACCAACAGGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCATGCCGCACAGGGGGGCGCCCTGGTCGAGGACGTCGCGGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCTTGGGATGCGTTGCCCCAGTGGCCGTAGATGTGGGCGCGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCTTCCGGGGCACCTGGCCGATGGATTCGCGGGGGAAAGGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCGTGACGGGCAGCAGCAGGCCGGGCACTTCGTCGCAGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCA

>LR134442|14|5|2953113-2954158|PILER-CR
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ATGTCGAAGGAGATGCGATAAGTTTCGGCGTCTGC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CTACCACGCAGTAGCCTAGATTCTCAGCAAGTCAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CATTCCGGCGCTTGTCAGGAGCCCGGTGATCGTGT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TCCCTGATCGTGGCTACGCGCAGCTGCGCGAGCAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ATGTACATCTCCGACGAGTTGGAGGGACGGTGAATC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	AGCGTCTGGATACGCTCCATCGCCTCGCGGATGTCAA
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ACGTCGGTGTCCTCCGAAGCCGACGTTTGCAACAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CTGCACACCTTGTCCGCGCCGTCCCTGACGGCACGAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CGGTATAGGGTCGCGTCGTGTGCTTCAACCTCCTT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTCAGCCATTGGAGCTGGGCGAAGTTCATCACCAACAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ATGCCGCACAGGGGGGCGCCCTGGTCGAGGACGTCGCG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTGGGATGCGTTGCCCCAGTGGCCGTAGATGTGGGCGC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTCCGGGGCACCTGGCCGATGGATTCGCGGGGGAAAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTGACGGGCAGCAGCAGGCCGGGCACTTCGTCGCA
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC

>LR134442|14|14|2953113-2954159|CRISPRCasFinder
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ATGTCGAAGGAGATGCGATAAGTTTCGGCGTCTGC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CTACCACGCAGTAGCCTAGATTCTCAGCAAGTCAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CATTCCGGCGCTTGTCAGGAGCCCGGTGATCGTGT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TCCCTGATCGTGGCTACGCGCAGCTGCGCGAGCAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ATGTACATCTCCGACGAGTTGGAGGGACGGTGAATC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	AGCGTCTGGATACGCTCCATCGCCTCGCGGATGTCAA
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ACGTCGGTGTCCTCCGAAGCCGACGTTTGCAACAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CTGCACACCTTGTCCGCGCCGTCCCTGACGGCACGAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CGGTATAGGGTCGCGTCGTGTGCTTCAACCTCCTT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTCAGCCATTGGAGCTGGGCGAAGTTCATCACCAACAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ATGCCGCACAGGGGGGCGCCCTGGTCGAGGACGTCGCG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTGGGATGCGTTGCCCCAGTGGCCGTAGATGTGGGCGC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTCCGGGGCACCTGGCCGATGGATTCGCGGGGGAAAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTGACGGGCAGCAGCAGGCCGGGCACTTCGTCGCA
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCA

>LR134442|14|5|2953113-2954158|CRT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ATGTCGAAGGAGATGCGATAAGTTTCGGCGTCTGC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CTACCACGCAGTAGCCTAGATTCTCAGCAAGTCAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CATTCCGGCGCTTGTCAGGAGCCCGGTGATCGTGT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TCCCTGATCGTGGCTACGCGCAGCTGCGCGAGCAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ATGTACATCTCCGACGAGTTGGAGGGACGGTGAATC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	AGCGTCTGGATACGCTCCATCGCCTCGCGGATGTCAA
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ACGTCGGTGTCCTCCGAAGCCGACGTTTGCAACAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CTGCACACCTTGTCCGCGCCGTCCCTGACGGCACGAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CGGTATAGGGTCGCGTCGTGTGCTTCAACCTCCTT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTCAGCCATTGGAGCTGGGCGAAGTTCATCACCAACAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ATGCCGCACAGGGGGGCGCCCTGGTCGAGGACGTCGCG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTGGGATGCGTTGCCCCAGTGGCCGTAGATGTGGGCGC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTCCGGGGCACCTGGCCGATGGATTCGCGGGGGAAAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTGACGGGCAGCAGCAGGCCGGGCACTTCGTCGCA
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH92785.1\|2960039_2960861_-\|Iron(3+)-hydroxamate-import-ATP-binding-protein-FhuC	unknown	unknown	gnl\|CDD\|224045
LR134442.1\|VEH92791.1\|2961907_2963026_-\|Probable-ABC-transporter-permease-protein-HI_1471	unknown	unknown	gnl\|CDD\|376439
LR134442.1\|VEH92745.1\|2944117_2944576_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372649
LR134442.1\|VEH92754.1\|2946636_2947593_+\|L-lactate-dehydrogenase-2	unknown	unknown	gnl\|CDD\|133428
LR134442.1\|VEH92779.1\|2958091_2959087_+\|Choloylglycine-hydrolase	unknown	unknown	gnl\|CDD\|238303
LR134442.1\|VEH92782.1\|2959257_2960043_-\|trans-aconitate-2-methyltransferase	unknown	unknown	gnl\|CDD\|379312
LR134442.1\|VEH92770.1\|2954193_2955261_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|315923
LR134442.1\|VEH92760.1\|2949490_2951989_+\|Alpha-xylosidase	unknown	unknown	gnl\|CDD\|269885
LR134442.1\|VEH92763.1\|2952067_2952634_+\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|377959
LR134442.1\|VEH92776.1\|2956842_2957811_-\|UDP-glucose-4-epimerase	unknown	unknown	gnl\|CDD\|187558
LR134442.1\|VEH92757.1\|2947780_2949271_+\|Carboxylesterase	unknown	unknown	gnl\|CDD\|225181
LR134442.1\|VEH92748.1\|2944622_2944883_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372577
LR134442.1\|VEH92739.1\|2942025_2942823_+\|Zinc-transporter-ZupT	unknown	unknown	gnl\|CDD\|223505
LR134442.1\|VEH92797.1\|2964917_2965511_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH92773.1\|2955542_2956235_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH92742.1\|2942879_2943947_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|315923
LR134442.1\|VEH92794.1\|2963704_2964601_-\|Sulfite-exporter-TauE/SafE	unknown	unknown	gnl\|CDD\|376667
LR134442.1\|VEH92736.1\|2941182_2941527_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|315923
LR134442.1\|VEH92751.1\|2945498_2945993_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372649
LR134442.1\|VEH92788.1\|2960857_2961859_-\|corrinoid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238568

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH92785.1\|2960039_2960861_-\|Iron(3+)-hydroxamate-import-ATP-binding-protein-FhuC	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	5.09858e-96
LR134442.1\|VEH92791.1\|2961907_2963026_-\|Probable-ABC-transporter-permease-protein-HI_1471	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	3.77227e-75
LR134442.1\|VEH92745.1\|2944117_2944576_+\|Uncharacterised-protein	gnl\|CDD\|372649	pfam13613, HTH_Tnp_4, Helix-turn-helix of DDE superfamily endonuclease. This domain is the probable DNA-binding region of transposase enzymes, necessary for efficient DNA transposition. Most of the members derive from the IS superfamily IS5 and rather fewer from IS4.	3.53668e-06
LR134442.1\|VEH92754.1\|2946636_2947593_+\|L-lactate-dehydrogenase-2	gnl\|CDD\|133428	cd05292, LDH_2, A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	3.58891e-153
LR134442.1\|VEH92779.1\|2958091_2959087_+\|Choloylglycine-hydrolase	gnl\|CDD\|238303	cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins. PVA has an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which PVA belongs. This nucleophilic cysteine is exposed by post-translational prossessing of the PVA precursor. PVA forms a homotetramer.	8.28906e-128
LR134442.1\|VEH92770.1\|2954193_2955261_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.63925e-24
LR134442.1\|VEH92760.1\|2949490_2951989_+\|Alpha-xylosidase	gnl\|CDD\|269885	cd06599, GH31_glycosidase_Aec37, E.coli Aec37-like. Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.	0
LR134442.1\|VEH92763.1\|2952067_2952634_+\|Predicted-membrane-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	1.13905e-18
LR134442.1\|VEH92776.1\|2956842_2957811_-\|UDP-glucose-4-epimerase	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.83311e-137
LR134442.1\|VEH92757.1\|2947780_2949271_+\|Carboxylesterase	gnl\|CDD\|225181	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].	4.09442e-102
LR134442.1\|VEH92748.1\|2944622_2944883_+\|Uncharacterised-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.02068e-13
LR134442.1\|VEH92739.1\|2942025_2942823_+\|Zinc-transporter-ZupT	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	6.28828e-45
LR134442.1\|VEH92782.1\|2959257_2960043_-\|trans-aconitate-2-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.01117e-13
LR134442.1\|VEH92742.1\|2942879_2943947_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.48463e-24
LR134442.1\|VEH92794.1\|2963704_2964601_-\|Sulfite-exporter-TauE/SafE	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	4.69215e-23
LR134442.1\|VEH92736.1\|2941182_2941527_-\|Uncharacterised-protein	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	0.00232202
LR134442.1\|VEH92751.1\|2945498_2945993_-\|Uncharacterised-protein	gnl\|CDD\|372649	pfam13613, HTH_Tnp_4, Helix-turn-helix of DDE superfamily endonuclease. This domain is the probable DNA-binding region of transposase enzymes, necessary for efficient DNA transposition. Most of the members derive from the IS superfamily IS5 and rather fewer from IS4.	1.47342e-06
LR134442.1\|VEH92788.1\|2960857_2961859_-\|corrinoid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	8.29632e-45

>LR134442.1|VEH92763.1|2952067_2952634_+|Predicted-membrane-protein
MNELVPVSALRVSDADRGAVTELLARAHAEGRLDLAEHSERSDRALSAKTVGDLLALVEDLTPARVAQAALPAAPAGSGAIRATLGSTRRTGAWMVPEKLHVSVLMGEAKIDMTEAVFTHPVVELDVSIIMGDVKVYVPAGINVIDESSHIMSDFKIKGTLQPAPGAPMILVKGSSIMGDVKIRVRPS
>LR134442.1|VEH92760.1|2949490_2951989_+|Alpha-xylosidase
MRTLDQITSFTQTATGLRAEITGGFTLHLDVLDNDLARVRVLPSGGPAVASTWTITPGQGVDERTGLDPDHLLTPAEDVPWSGRDRSDLSGFACPPVTVEEVELETAGSDATGMGKNATDEMAIFDRPRPGQHRIIVTSGDLRAVIQDIPLRVCWQIRVDDGWTTITEDRRTGGYEINPVTGRVAHYIMREPEDHYYGLGEKGGDLERTGSRYDMRCLDAMGYDAVETDPLYKHVPFIMTRRAGVGAVGVLYDNQSAAVLDMGRVKDNYHRPFISWTADGGDIDYYVMFGRQLADLTRSIVRLTGDNAFLPRWALGYSGSTMHYTDAPDAADKLVEFLDLLGEHKIPCDSFQMSSGYTSIGPKRYVFNWNRDKFPDPRRTAQAYADKGLHLAANIKPALLIDHPMFEEAASQGVFVADEETGEPELSLFWGDRGAHVDFTSPAGRDWWKDNVRTKLLEMGIGSTWNDNNEYEVWDDRAICEGFGTKVPLALIRPVQSLLMMRASAEAQREFAPAERPYLISRSGMLGMQRYVQTWSGDNYTSWKTLKYNTRMGTGMSMSGVFNVGHDVGGFSGAARPSPELFVRWVQNGVMHPRFTIHSWHDDGSVNEPWMYPEVTGLIREAIELRYRLMPYLYTALYLGSQRREPIIAPTFYADESDESLFVENDDFLLGRDLLVASVVEEGATTRTVRLPDVPDGWFEFDTGIHHDGGQTVTVDAPLGRLPLFVRAGAGIPLAELPAEADIITTASLEATGRRVVLYLPERVVAASGFLFEDDGISEAYRDGEGLWLRWSVDADPEQVRVHTERDGRFVPAWGEVEFVLRPGDDREIVVE
>LR134442.1|VEH92757.1|2947780_2949271_+|Carboxylesterase
MQITPYGSVLADVTGGRVVGFVDNDGMKVFRGIPYAAAPYGANRFKAPQPVVPWDGERDATTFGPSTYQIEPLFRGHGFNYRAIMSPGWRPGDETLNLNIWTPGEAGDNLPVLVYIHGGAFLTGNGGLPAYDGHHLAERGAVYVSIHYRTGTEGFGAFEGAATNRGLRDQIAALTWVQENIARFGGDPDRVMVHGESAGGMSIALLLASPAADGLFHRAIVQSGSSPMADSPELAADRARRIAAALGTEPTAEAIAAVDQKTLLDTALPALAENHTDRWDMLALGPWVDGEIVPEDLDTAMLARPVRPTIWGTNRDEGNLFLITPDMMSTATEETLAGYLMASHGAVEPLRTMLLERARIHEPGMAMAQHLSWTTFTGPTMTAVDQLAGDGRPTWLYRFDYASRANDGRAQACHMSEFPFVWDNLDSPAHRQMTGPNPPQRLATEMADAWVRFAATADPGWPAFTDPQRIGRVFDTTSRDVPGLDQELWRAWTNQG
>LR134442.1|VEH92754.1|2946636_2947593_+|L-lactate-dehydrogenase-2
MRTSTRHPSKLSIVGAGAVGTSLAYAALIRDSAQVVALYDIATKKVDAEVKDLAHGTQFTNSVVMGGDDISVVKDSSIVIMTAGAKQKPGQTRLDLAATNAKILASMMPQLVEQAPEALYVLVTNPCDVLTVVAQKVSGLPTAQVLSTGTLLDTSRLRYLIARRAQVAQPNVHSMIVGEHGDSEFPLWSSATISSVPIRDWTVAGERVFTQQVLDELAHEAAFAAYEVIEGKGATNYAIGLAGARLVEALLSPTRSVLPVSSVLDGYYDISGVALSLPTLVSKHGVDRVVEAPMSADEVSLLHASAERIRETVASVGF
>LR134442.1|VEH92751.1|2945498_2945993_-|Uncharacterised-protein
MVEYNNLRTGPRVYHTTGLPAEAIAVCYQTLVHNHPRTPQATGRPPALSQEEEIRATPAYLRRNRAQSELAESFGVSQSSICRAIARWTPRIVEALADLVPTADDLDQTQTLIVDGTLVPCWDWNHQPGLYSGKHHTTGLNLQIACTLTGRLVWVLRPCPRVDP
>LR134442.1|VEH92748.1|2944622_2944883_+|Uncharacterised-protein
MPPLGDKGYIGLGMRTPIRKPPGGGLTDWQKQYNHAINKLRAPVERAIAHLKTWRILHAGYRRPLDTFPQTITAVIALEFYKNSFE
>LR134442.1|VEH92745.1|2944117_2944576_+|Uncharacterised-protein
MYHTTGLPAAAITVLYQTLVHNYPRTPQATGRPPALSQAEEIRATLAYLRRNRAQSELAESFGVSQASICRAIARWTPRIVEVLAELVPTADDLDQTQTLIVDGTLVPCWDWNHQPGLYSGKHHTTGLNLQIACTLTGRLVWVLRPCPRVDP
>LR134442.1|VEH92742.1|2942879_2943947_-|Transposase-and-inactivated-derivatives
MQVEVTPEETAVLIRWKKRTDNYMLVRMKAEAILYASEGVGLGIIAKMVERSEKTVREWLADWQASRMCSVLTGHAGNQNAAKLTRTQKEDLKTVLAQPPSRSGIDAEFWDVPALRDVVKILFDVEYESESSYQLLLRFCGLSFKLPDPFDKHRDEKAITRRMAEVKAQVYQLLEAGCEVYAVDEVRLEHEAETRRIWLPRGQRTKLYVDRQKVSQSFFGALSLTDKKMRLYPIEGNQNTEQIILALERLQRETRTEKIAVVLDNARFHHAKALTGLYEPGQLLERITPIFLPPYAPDHNPVEHVWNTAKTNIANIQRETPDQTFGAFASYVTGRTFDYDFEHLPKPQPETDLVS
>LR134442.1|VEH92739.1|2942025_2942823_+|Zinc-transporter-ZupT
MIEVFPVNIQLIQGIFIPFLGTSLGAATVFFLREGISDATRRILIGFAAGVMMAASFWSLLQPALDSSDHMGRLSFIPAAVGFLIGIGFFCSWVFLRRIMHMDEKAGEPISGLRRKSKLILAVTLHNIPEGMAVGVVYAGWLSGETGISQAAALVLSLGIAIQNFPEGAIVSMPLRAEGMPKMKTFWYGVLSGAVEPIAAAATIVTASTVVIVLPYMLAFAAGAMIYVVVEELIPEMSSNTHSNAGTVAFSLGFVLMMILDVALG
>LR134442.1|VEH92736.1|2941182_2941527_-|Uncharacterised-protein
MQPPRFLPPYAPGHNPIEHVWNTANIHHETPDQTFGAFASYITVKNSRQSSSVRSSAVSSGRLSGYSRGSRWFVFAHALSGLVMTGWIAGECLIIDAFGWPHALWGGLACAAGS
>LR134442.1|VEH92770.1|2954193_2955261_-|Transposase-and-inactivated-derivatives
MQIEVTPEETAVLIRWKKRTDTYVLVRMKAEAILYASRGVDVGIIAEMVERSEKTVREWLAEWQASRMCSVLTGHAGNQNAAKLTRTQKEDLKTVLALPPSRSGIDAEFWDVPALRDVVKILFDVEYESESSYQLLLRFCGLSFKLPDPFDKHRDEQAITRRMTEVKTQVNDLLGAGCEVYAIDEVRLEHEAETRRMWLPKGQRTKLYVDRQKVSQSFFGALSLTDKKVRLYPIEGNQNTEQIILALERLQRETKADRIAVVLDNARFHHAKALTSLYQPGQLLERITPVFLPPYAPDHNPVEHVWGTAKNNIANIQHQTPEQTFGAFASYITGRTFDYDFEHLPKPQPETDLVS
>LR134442.1|VEH92773.1|2955542_2956235_-|Uncharacterised-protein
MEPHLFRWGNGRRASRARRVGCASMEPHLFRWGNGRRASRARRVGCASMEPHLFRWGNIRDRAALLHLVHASMEPHLFRWGNHASFASGAVTSPGLNGAPPIQVGKPLHRPTRTRPGRWPQWSPTYSGGETRPALAGQQVRVLASMEPHLFRWGNLGEALAESISAWASMEPHLFRWGNVGRRRRQQPEERSLNGAPPIQVGKRLYELVNNTIASKPQWSPTYSGGETTL
>LR134442.1|VEH92776.1|2956842_2957811_-|UDP-glucose-4-epimerase
MSWLVTGGAGYIGSHIVRAFQQAGIEPVVIDDLSSGFADFVPRDVPFVQGSILDTALVRRALTEHSCQGVVHLAGFKYAGVSVSRPLHTYTQNVTGTVSLLRAMREAGVHRYVFSSSASVYGTPETDPVTEDTPLHPESPYGETKLIGEWLNRDMAAVDEAWQSVNLRYFNVVGSGTDELYDASPHNLFPIVFDMLLEGRTPRINGDDYPTPDGTCVRDYIHVADLARSHVAAAEAMMAGRALEPSYNLGSGNGSSVREIMEAIARVTGIDFTPEIAPRRPGDPARIVARGELAARDIDWKMRNSLDDMVASAWSARKAHQG
>LR134442.1|VEH92779.1|2958091_2959087_+|Choloylglycine-hydrolase
MCTGIRFTDSAGNMYFGRNLDWSTSYGERVVITPKGFPVRWAFLDDAPAAHAVIGMGIVFEDHPLYFDCGNDAGLAVAGLNFPGYAHYEDGPADGRTNVAAYEFPLWVASTFSTVDEVEAALSGTAIVGRPVSEELGVSLLHWIIGDGRRSIVVEYMADGMHVHQDTVDTLANQPTFDWHLENLRSFITATGDLPQPAHWRDAELVPFGSGAGMRGIPGDYYSPSRFVKAAFLNAHYPTKDTETENVARLFHTLGNVSMVDGAALMANGAYERTLYTGCFSARTGTYYYSTYDDPALRRVRLADHADADPGHLLQPEPLSGTAPATIRRVF
>LR134442.1|VEH92782.1|2959257_2960043_-|trans-aconitate-2-methyltransferase
MTPDELLEAWHRQQTAFIEFRELRTRMMTDALQRLREQRGRPLRMLDLACGPASLASAALAVLPDGEAVAVDCDPVLLRLARETNRFGDRLRVVEADLTAPDLPERLPAGPYDAAFSATALHWLDPDELVALYQRLPRLLGPGALFMNADHLFYDARHNPWLSAHAPDAREAFEREAVAGGVMGWDQWWAAATGMPGWEQEAAEREKVWADDHPTVKVSLEFHLAALRAAGFTETGQLYQLLDDRIVFARLPDPGEDGGLG
>LR134442.1|VEH92785.1|2960039_2960861_-|Iron(3+)-hydroxamate-import-ATP-binding-protein-FhuC
MIQAEHITIDRGGRTICHGVDLTAGPGRVVGVVGPNGSGKTTFLLSLNRALRLAGGRVLIDGDDVADLRRREIARRVAVVAQENETVLPLTVRDSVALGRLATSTMFDYGNDADAALVDEALARVELTELADRLVTRVSGGERQRAMVARAIAQQASHLLLDEPTNHLDLRHQFALLELVRALDCTTVIVLHDLNMAARFCDEVMLLAEGRVVASGAPADVLTPERIAPIYRMHVDRVEHLGRPYLLFDSETHAAAGGAHTEAGEASGEEGDR
>LR134442.1|VEH92788.1|2960857_2961859_-|corrinoid-ABC-transporter-substrate-binding-protein
MKKLAPAAAALAATMMLTACGSSAADKAASSASEAGSAAGFPAEVTSCTETLHFDAAPERVVIIGGTSASILKDLGLMDHVVARAGDPGLQDADPDLQSQIEAIPEVESSSNVTGGRVVSTEAILSVRPDLVIGYDSGVERDALRDAGVPLYAPDAFCDEMTLEHATWDNVENEVTKTATIFGVTDKVPALMDEVRGRLDDIEQTAASGQSAAALYLTPGSDVFYAYGTPSMIQPIFEANGLKNAYEDTQERVFDASMEDLLDRNPQWIVLMGDAGTTTEQLTETLMGLNGAADLQAVKDGHVLVLSFRLTDPPNTLSVQGAVRLSQLIGEAQ
>LR134442.1|VEH92791.1|2961907_2963026_-|Probable-ABC-transporter-permease-protein-HI_1471
MSTLQRRRTNRAPAGRAGAVPAGPPRPAAADARSRRGPALRRIGLIAILLAVSPALTIAMGPAAVPLHDVFGVIASHVPGLPVDITWDRTTDAIVWQTRLPRIIGAMAVGAILGVAGVVMQAIVRNPLAEPYVLGVSSGASTGAALAMIVLGISSGTGVGLLAFAGAALATAAVLAVAGRTHSPLHLVLGGLAVGFGFQALTNLIIFSADSAEAGQSVAFWMLGSMARIGNGDLPRMITTAVVLVVAMALLGPVLDALASGDRTAQSVGIEPGRARIGLLIPVSAAVAIAVAGAGGIGFIGLIIPHLMRSFIGHSHRLLVVGTALAAALFCVWTDTVARIVFSPAELPLGVITGLVGAPFLIVIIRRSRATW
>LR134442.1|VEH92794.1|2963704_2964601_-|Sulfite-exporter-TauE/SafE
MKQLVLLAVAGLVAQLIDGSLGMGYGVTSTSVLLAGGLSPAAASASVHMAEVGTTVASGLSHWRLRNVDWWLVLRLGVPGAAGAFLGATVLSGLSTEAARPVMALLLVGLGLFILGRSLRRRDAAVSESRISPHGRRFLVPLGLVGGFVDATGGGGWGPVSTTALVSAGRTSPRTVIGSVDTSEFMVSLAASAGFFVGLGRSGVHLTHVLVLLAGGLIAAPIAAWLVSRIPPKIMGALVGGAIVMTNLGQLFSGLALPQAALLPSAVVLLLVWGTAVLVVATGRGAPRGVSRVAAERV
>LR134442.1|VEH92797.1|2964917_2965511_+|Uncharacterised-protein
MSTTKTPMRRRAGLAAALASLMSVLCVAACTASPSSPPPRSTTGPSTQASTAAYDFSPFAEQTYEQVEVSDDPARVTAFLPELNVSEAHSMAASREDPRSIPGPDPQYWLNAVVTLEQDSVEALAERVDPHELSTLPALAPELQQYVPSGCTFTRLPLKNATPITGATPAGTDSFKLTAFSLSADCSTAIIMAEIVF

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Crispr_ID: LR134442_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_15

2955338-2956608

Orphan

Consensus_repeat	Method
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	PILER-CR
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CRISPRCasFinder
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCN	CRT

17 spacers

The CRISPR arrays of LR134442_15

>merge|LR134442|15|2955338-2956608|PILER-CR,CRISPRCasFinder,CRT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCCCGGTGAGGGTGGGGGTGATTATGGTGCGGGCATGGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCGCGACGATCACCTCCACACCCCCTCGTGGGTGGCCTGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCTTGGTAGCTGAGACCAAGATCATCCCTCAAAGAGTCGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCTTGCTCGCAATGGTGTTGTTGACCAGCTCGTAGAGCCGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCTTCTTTCTTCTGGTTGTTGACGTCGTCGACGACCCACGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCCCACGCGCTGATGCTCTCAGCAAGCGCCTCGCCCAGGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCGAGCACTCTGACCTGCTGTCCCGCGAGGGCTGGGCGCGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCCATCTTCCAGGACGTGTACGAGTGGGCCGGTGAAGAGGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCCCGGTGACGTGACTGCCCCGGACGCAAATGATGCATGGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCGTGGACAAGGTGAAGGAGTGCGGCACGGTCCCGGATGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCACAGCCGACACGGCGTGCACGCGACGCTCTTCTACCGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCACAGCCGACACGGCGTGCACGCGACGCTCTTCTACCGTTTCCCCACCTGAATAGGTGGGGTTCCATTGAGGCGAGGCGCTCCTCGGTGACATGTGAGCGTCCGTGCCGTGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCGTTGACCGCGGCGGCTAAGACCGCGCAGTGGCGGGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCTTCAGCTGTGTCACCACGGCTGTATACCGATCTGATGTACAGGTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGCTTGCTGATCGCAACGTGCGTGTGCAGGTCGGGGTCACCGTTTCCCCACCTGAATAGGTGGGGCTTATTGAGGCGTGCAACTCACGGCCAAGAAGATCGAGAGCCCGGAGGGTTTCCCCTGGGTCTCCGTGACGCTGCGCCCATTGC

>LR134442|15|6|2955338-2956462|PILER-CR
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CCGGTGAGGGTGGGGGTGATTATGGTGCGGGCATG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GCGACGATCACCTCCACACCCCCTCGTGGGTGGCCT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTGGTAGCTGAGACCAAGATCATCCCTCAAAGAGTC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTGCTCGCAATGGTGTTGTTGACCAGCTCGTAGAGCC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTCTTTCTTCTGGTTGTTGACGTCGTCGACGACCCAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CCACGCGCTGATGCTCTCAGCAAGCGCCTCGCCCAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GAGCACTCTGACCTGCTGTCCCGCGAGGGCTGGGCGC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CATCTTCCAGGACGTGTACGAGTGGGCCGGTGAAGAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CCGGTGACGTGACTGCCCCGGACGCAAATGATGCATG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTGGACAAGGTGAAGGAGTGCGGCACGGTCCCGGAT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC
GTTTCCCCACCTGAATAGGTGGGGTTCCATTGAGGC	GAGGCGCTCCTCGGTGACATGTGAGCGTCCGTGCCGT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTTGACCGCGGCGGCTAAGACCGCGCAGTGGCGG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTCAGCTGTGTCACCACGGCTGTATACCGATCTGATGTACAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC

>LR134442|15|15|2955338-2956536|CRISPRCasFinder
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CCGGTGAGGGTGGGGGTGATTATGGTGCGGGCATG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GCGACGATCACCTCCACACCCCCTCGTGGGTGGCCT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTGGTAGCTGAGACCAAGATCATCCCTCAAAGAGTC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTGCTCGCAATGGTGTTGTTGACCAGCTCGTAGAGCC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTCTTTCTTCTGGTTGTTGACGTCGTCGACGACCCAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CCACGCGCTGATGCTCTCAGCAAGCGCCTCGCCCAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GAGCACTCTGACCTGCTGTCCCGCGAGGGCTGGGCGC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CATCTTCCAGGACGTGTACGAGTGGGCCGGTGAAGAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CCGGTGACGTGACTGCCCCGGACGCAAATGATGCATG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTGGACAAGGTGAAGGAGTGCGGCACGGTCCCGGAT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC
GTTTCCCCACCTGAATAGGTGGGGTTCCATTGAGGC	GAGGCGCTCCTCGGTGACATGTGAGCGTCCGTGCCGT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTTGACCGCGGCGGCTAAGACCGCGCAGTGGCGG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTCAGCTGTGTCACCACGGCTGTATACCGATCTGATGTACAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTGCTGATCGCAACGTGCGTGTGCAGGTCGGGGTCACC
GTTTCCCCACCTGAATAGGTGGGGCTTATTGAGGCG

>LR134442|15|6|2955338-2956608|CRT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CCGGTGAGGGTGGGGGTGATTATGGTGCGGGCATG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GCGACGATCACCTCCACACCCCCTCGTGGGTGGCCT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTGGTAGCTGAGACCAAGATCATCCCTCAAAGAGTC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTGCTCGCAATGGTGTTGTTGACCAGCTCGTAGAGCC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTCTTTCTTCTGGTTGTTGACGTCGTCGACGACCCAC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CCACGCGCTGATGCTCTCAGCAAGCGCCTCGCCCAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GAGCACTCTGACCTGCTGTCCCGCGAGGGCTGGGCGC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CATCTTCCAGGACGTGTACGAGTGGGCCGGTGAAGAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	CCGGTGACGTGACTGCCCCGGACGCAAATGATGCATG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTGGACAAGGTGAAGGAGTGCGGCACGGTCCCGGAT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC
GTTTCCCCACCTGAATAGGTGGGGTTCCATTGAGGC	GAGGCGCTCCTCGGTGACATGTGAGCGTCCGTGCCGT
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	GTTGACCGCGGCGGCTAAGACCGCGCAGTGGCGG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTCAGCTGTGTCACCACGGCTGTATACCGATCTGATGTACAG
GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC	TTGCTGATCGCAACGTGCGTGTGCAGGTCGGGGTCACC
GTTTCCCCACCTGAATAGGTGGGGCTTATTGAGGCG	TGCAACTCACGGCCAAGAAGATCGAGAGCCCGGAGG
GTTTCCCCTGGGTCTCCGTGACGCTGCGCCCATTGC

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH92785.1\|2960039_2960861_-\|Iron(3+)-hydroxamate-import-ATP-binding-protein-FhuC	unknown	unknown	gnl\|CDD\|224045
LR134442.1\|VEH92791.1\|2961907_2963026_-\|Probable-ABC-transporter-permease-protein-HI_1471	unknown	unknown	gnl\|CDD\|376439
LR134442.1\|VEH92745.1\|2944117_2944576_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372649
LR134442.1\|VEH92754.1\|2946636_2947593_+\|L-lactate-dehydrogenase-2	unknown	unknown	gnl\|CDD\|133428
LR134442.1\|VEH92779.1\|2958091_2959087_+\|Choloylglycine-hydrolase	unknown	unknown	gnl\|CDD\|238303
LR134442.1\|VEH92767.1\|2953537_2954197_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH92800.1\|2965817_2967221_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH92770.1\|2954193_2955261_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|315923
LR134442.1\|VEH92760.1\|2949490_2951989_+\|Alpha-xylosidase	unknown	unknown	gnl\|CDD\|269885
LR134442.1\|VEH92763.1\|2952067_2952634_+\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|377959
LR134442.1\|VEH92776.1\|2956842_2957811_-\|UDP-glucose-4-epimerase	unknown	unknown	gnl\|CDD\|187558
LR134442.1\|VEH92757.1\|2947780_2949271_+\|Carboxylesterase	unknown	unknown	gnl\|CDD\|225181
LR134442.1\|VEH92748.1\|2944622_2944883_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372577
LR134442.1\|VEH92803.1\|2967602_2968436_-\|Fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|376459
LR134442.1\|VEH92797.1\|2964917_2965511_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH92782.1\|2959257_2960043_-\|trans-aconitate-2-methyltransferase	unknown	unknown	gnl\|CDD\|379312
LR134442.1\|VEH92742.1\|2942879_2943947_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|315923
LR134442.1\|VEH92794.1\|2963704_2964601_-\|Sulfite-exporter-TauE/SafE	unknown	unknown	gnl\|CDD\|376667
LR134442.1\|VEH92751.1\|2945498_2945993_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372649
LR134442.1\|VEH92788.1\|2960857_2961859_-\|corrinoid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238568

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH92785.1\|2960039_2960861_-\|Iron(3+)-hydroxamate-import-ATP-binding-protein-FhuC	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	5.09858e-96
LR134442.1\|VEH92791.1\|2961907_2963026_-\|Probable-ABC-transporter-permease-protein-HI_1471	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	3.77227e-75
LR134442.1\|VEH92745.1\|2944117_2944576_+\|Uncharacterised-protein	gnl\|CDD\|372649	pfam13613, HTH_Tnp_4, Helix-turn-helix of DDE superfamily endonuclease. This domain is the probable DNA-binding region of transposase enzymes, necessary for efficient DNA transposition. Most of the members derive from the IS superfamily IS5 and rather fewer from IS4.	3.53668e-06
LR134442.1\|VEH92754.1\|2946636_2947593_+\|L-lactate-dehydrogenase-2	gnl\|CDD\|133428	cd05292, LDH_2, A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	3.58891e-153
LR134442.1\|VEH92779.1\|2958091_2959087_+\|Choloylglycine-hydrolase	gnl\|CDD\|238303	cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins. PVA has an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which PVA belongs. This nucleophilic cysteine is exposed by post-translational prossessing of the PVA precursor. PVA forms a homotetramer.	8.28906e-128
LR134442.1\|VEH92770.1\|2954193_2955261_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.63925e-24
LR134442.1\|VEH92760.1\|2949490_2951989_+\|Alpha-xylosidase	gnl\|CDD\|269885	cd06599, GH31_glycosidase_Aec37, E.coli Aec37-like. Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.	0
LR134442.1\|VEH92763.1\|2952067_2952634_+\|Predicted-membrane-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	1.13905e-18
LR134442.1\|VEH92776.1\|2956842_2957811_-\|UDP-glucose-4-epimerase	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.83311e-137
LR134442.1\|VEH92757.1\|2947780_2949271_+\|Carboxylesterase	gnl\|CDD\|225181	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].	4.09442e-102
LR134442.1\|VEH92748.1\|2944622_2944883_+\|Uncharacterised-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.02068e-13
LR134442.1\|VEH92803.1\|2967602_2968436_-\|Fructose-bisphosphate-aldolase	gnl\|CDD\|376459	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II.	6.2189e-97
LR134442.1\|VEH92782.1\|2959257_2960043_-\|trans-aconitate-2-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.01117e-13
LR134442.1\|VEH92742.1\|2942879_2943947_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.48463e-24
LR134442.1\|VEH92794.1\|2963704_2964601_-\|Sulfite-exporter-TauE/SafE	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	4.69215e-23
LR134442.1\|VEH92751.1\|2945498_2945993_-\|Uncharacterised-protein	gnl\|CDD\|372649	pfam13613, HTH_Tnp_4, Helix-turn-helix of DDE superfamily endonuclease. This domain is the probable DNA-binding region of transposase enzymes, necessary for efficient DNA transposition. Most of the members derive from the IS superfamily IS5 and rather fewer from IS4.	1.47342e-06
LR134442.1\|VEH92788.1\|2960857_2961859_-\|corrinoid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	8.29632e-45

>LR134442.1|VEH92770.1|2954193_2955261_-|Transposase-and-inactivated-derivatives
MQIEVTPEETAVLIRWKKRTDTYVLVRMKAEAILYASRGVDVGIIAEMVERSEKTVREWLAEWQASRMCSVLTGHAGNQNAAKLTRTQKEDLKTVLALPPSRSGIDAEFWDVPALRDVVKILFDVEYESESSYQLLLRFCGLSFKLPDPFDKHRDEQAITRRMTEVKTQVNDLLGAGCEVYAIDEVRLEHEAETRRMWLPKGQRTKLYVDRQKVSQSFFGALSLTDKKVRLYPIEGNQNTEQIILALERLQRETKADRIAVVLDNARFHHAKALTSLYQPGQLLERITPVFLPPYAPDHNPVEHVWGTAKNNIANIQHQTPEQTFGAFASYITGRTFDYDFEHLPKPQPETDLVS
>LR134442.1|VEH92767.1|2953537_2954197_-|Uncharacterised-protein
MTAIHVRFRTGLYASMEPHLFRWGNCDEVPGLLLPVTPQWSPTYSGGETFPPRIHRPGAPEASMEPHLFRWGNAPTSTATGATHPKPQWSPTYSGGETATSSTRAPPCAACLNGAPPIQVGKPVGDELRPAPMADASMEPHLFRWGNKEVEAHDATLYRPQWSPTYSGGETSCRQGRRGQGVQASMEPHLFRWGNVLQTSASEDTDVPQWSPTYSGGET
>LR134442.1|VEH92763.1|2952067_2952634_+|Predicted-membrane-protein
MNELVPVSALRVSDADRGAVTELLARAHAEGRLDLAEHSERSDRALSAKTVGDLLALVEDLTPARVAQAALPAAPAGSGAIRATLGSTRRTGAWMVPEKLHVSVLMGEAKIDMTEAVFTHPVVELDVSIIMGDVKVYVPAGINVIDESSHIMSDFKIKGTLQPAPGAPMILVKGSSIMGDVKIRVRPS
>LR134442.1|VEH92760.1|2949490_2951989_+|Alpha-xylosidase
MRTLDQITSFTQTATGLRAEITGGFTLHLDVLDNDLARVRVLPSGGPAVASTWTITPGQGVDERTGLDPDHLLTPAEDVPWSGRDRSDLSGFACPPVTVEEVELETAGSDATGMGKNATDEMAIFDRPRPGQHRIIVTSGDLRAVIQDIPLRVCWQIRVDDGWTTITEDRRTGGYEINPVTGRVAHYIMREPEDHYYGLGEKGGDLERTGSRYDMRCLDAMGYDAVETDPLYKHVPFIMTRRAGVGAVGVLYDNQSAAVLDMGRVKDNYHRPFISWTADGGDIDYYVMFGRQLADLTRSIVRLTGDNAFLPRWALGYSGSTMHYTDAPDAADKLVEFLDLLGEHKIPCDSFQMSSGYTSIGPKRYVFNWNRDKFPDPRRTAQAYADKGLHLAANIKPALLIDHPMFEEAASQGVFVADEETGEPELSLFWGDRGAHVDFTSPAGRDWWKDNVRTKLLEMGIGSTWNDNNEYEVWDDRAICEGFGTKVPLALIRPVQSLLMMRASAEAQREFAPAERPYLISRSGMLGMQRYVQTWSGDNYTSWKTLKYNTRMGTGMSMSGVFNVGHDVGGFSGAARPSPELFVRWVQNGVMHPRFTIHSWHDDGSVNEPWMYPEVTGLIREAIELRYRLMPYLYTALYLGSQRREPIIAPTFYADESDESLFVENDDFLLGRDLLVASVVEEGATTRTVRLPDVPDGWFEFDTGIHHDGGQTVTVDAPLGRLPLFVRAGAGIPLAELPAEADIITTASLEATGRRVVLYLPERVVAASGFLFEDDGISEAYRDGEGLWLRWSVDADPEQVRVHTERDGRFVPAWGEVEFVLRPGDDREIVVE
>LR134442.1|VEH92757.1|2947780_2949271_+|Carboxylesterase
MQITPYGSVLADVTGGRVVGFVDNDGMKVFRGIPYAAAPYGANRFKAPQPVVPWDGERDATTFGPSTYQIEPLFRGHGFNYRAIMSPGWRPGDETLNLNIWTPGEAGDNLPVLVYIHGGAFLTGNGGLPAYDGHHLAERGAVYVSIHYRTGTEGFGAFEGAATNRGLRDQIAALTWVQENIARFGGDPDRVMVHGESAGGMSIALLLASPAADGLFHRAIVQSGSSPMADSPELAADRARRIAAALGTEPTAEAIAAVDQKTLLDTALPALAENHTDRWDMLALGPWVDGEIVPEDLDTAMLARPVRPTIWGTNRDEGNLFLITPDMMSTATEETLAGYLMASHGAVEPLRTMLLERARIHEPGMAMAQHLSWTTFTGPTMTAVDQLAGDGRPTWLYRFDYASRANDGRAQACHMSEFPFVWDNLDSPAHRQMTGPNPPQRLATEMADAWVRFAATADPGWPAFTDPQRIGRVFDTTSRDVPGLDQELWRAWTNQG
>LR134442.1|VEH92754.1|2946636_2947593_+|L-lactate-dehydrogenase-2
MRTSTRHPSKLSIVGAGAVGTSLAYAALIRDSAQVVALYDIATKKVDAEVKDLAHGTQFTNSVVMGGDDISVVKDSSIVIMTAGAKQKPGQTRLDLAATNAKILASMMPQLVEQAPEALYVLVTNPCDVLTVVAQKVSGLPTAQVLSTGTLLDTSRLRYLIARRAQVAQPNVHSMIVGEHGDSEFPLWSSATISSVPIRDWTVAGERVFTQQVLDELAHEAAFAAYEVIEGKGATNYAIGLAGARLVEALLSPTRSVLPVSSVLDGYYDISGVALSLPTLVSKHGVDRVVEAPMSADEVSLLHASAERIRETVASVGF
>LR134442.1|VEH92751.1|2945498_2945993_-|Uncharacterised-protein
MVEYNNLRTGPRVYHTTGLPAEAIAVCYQTLVHNHPRTPQATGRPPALSQEEEIRATPAYLRRNRAQSELAESFGVSQSSICRAIARWTPRIVEALADLVPTADDLDQTQTLIVDGTLVPCWDWNHQPGLYSGKHHTTGLNLQIACTLTGRLVWVLRPCPRVDP
>LR134442.1|VEH92748.1|2944622_2944883_+|Uncharacterised-protein
MPPLGDKGYIGLGMRTPIRKPPGGGLTDWQKQYNHAINKLRAPVERAIAHLKTWRILHAGYRRPLDTFPQTITAVIALEFYKNSFE
>LR134442.1|VEH92745.1|2944117_2944576_+|Uncharacterised-protein
MYHTTGLPAAAITVLYQTLVHNYPRTPQATGRPPALSQAEEIRATLAYLRRNRAQSELAESFGVSQASICRAIARWTPRIVEVLAELVPTADDLDQTQTLIVDGTLVPCWDWNHQPGLYSGKHHTTGLNLQIACTLTGRLVWVLRPCPRVDP
>LR134442.1|VEH92742.1|2942879_2943947_-|Transposase-and-inactivated-derivatives
MQVEVTPEETAVLIRWKKRTDNYMLVRMKAEAILYASEGVGLGIIAKMVERSEKTVREWLADWQASRMCSVLTGHAGNQNAAKLTRTQKEDLKTVLAQPPSRSGIDAEFWDVPALRDVVKILFDVEYESESSYQLLLRFCGLSFKLPDPFDKHRDEKAITRRMAEVKAQVYQLLEAGCEVYAVDEVRLEHEAETRRIWLPRGQRTKLYVDRQKVSQSFFGALSLTDKKMRLYPIEGNQNTEQIILALERLQRETRTEKIAVVLDNARFHHAKALTGLYEPGQLLERITPIFLPPYAPDHNPVEHVWNTAKTNIANIQRETPDQTFGAFASYVTGRTFDYDFEHLPKPQPETDLVS
>LR134442.1|VEH92776.1|2956842_2957811_-|UDP-glucose-4-epimerase
MSWLVTGGAGYIGSHIVRAFQQAGIEPVVIDDLSSGFADFVPRDVPFVQGSILDTALVRRALTEHSCQGVVHLAGFKYAGVSVSRPLHTYTQNVTGTVSLLRAMREAGVHRYVFSSSASVYGTPETDPVTEDTPLHPESPYGETKLIGEWLNRDMAAVDEAWQSVNLRYFNVVGSGTDELYDASPHNLFPIVFDMLLEGRTPRINGDDYPTPDGTCVRDYIHVADLARSHVAAAEAMMAGRALEPSYNLGSGNGSSVREIMEAIARVTGIDFTPEIAPRRPGDPARIVARGELAARDIDWKMRNSLDDMVASAWSARKAHQG
>LR134442.1|VEH92779.1|2958091_2959087_+|Choloylglycine-hydrolase
MCTGIRFTDSAGNMYFGRNLDWSTSYGERVVITPKGFPVRWAFLDDAPAAHAVIGMGIVFEDHPLYFDCGNDAGLAVAGLNFPGYAHYEDGPADGRTNVAAYEFPLWVASTFSTVDEVEAALSGTAIVGRPVSEELGVSLLHWIIGDGRRSIVVEYMADGMHVHQDTVDTLANQPTFDWHLENLRSFITATGDLPQPAHWRDAELVPFGSGAGMRGIPGDYYSPSRFVKAAFLNAHYPTKDTETENVARLFHTLGNVSMVDGAALMANGAYERTLYTGCFSARTGTYYYSTYDDPALRRVRLADHADADPGHLLQPEPLSGTAPATIRRVF
>LR134442.1|VEH92782.1|2959257_2960043_-|trans-aconitate-2-methyltransferase
MTPDELLEAWHRQQTAFIEFRELRTRMMTDALQRLREQRGRPLRMLDLACGPASLASAALAVLPDGEAVAVDCDPVLLRLARETNRFGDRLRVVEADLTAPDLPERLPAGPYDAAFSATALHWLDPDELVALYQRLPRLLGPGALFMNADHLFYDARHNPWLSAHAPDAREAFEREAVAGGVMGWDQWWAAATGMPGWEQEAAEREKVWADDHPTVKVSLEFHLAALRAAGFTETGQLYQLLDDRIVFARLPDPGEDGGLG
>LR134442.1|VEH92785.1|2960039_2960861_-|Iron(3+)-hydroxamate-import-ATP-binding-protein-FhuC
MIQAEHITIDRGGRTICHGVDLTAGPGRVVGVVGPNGSGKTTFLLSLNRALRLAGGRVLIDGDDVADLRRREIARRVAVVAQENETVLPLTVRDSVALGRLATSTMFDYGNDADAALVDEALARVELTELADRLVTRVSGGERQRAMVARAIAQQASHLLLDEPTNHLDLRHQFALLELVRALDCTTVIVLHDLNMAARFCDEVMLLAEGRVVASGAPADVLTPERIAPIYRMHVDRVEHLGRPYLLFDSETHAAAGGAHTEAGEASGEEGDR
>LR134442.1|VEH92788.1|2960857_2961859_-|corrinoid-ABC-transporter-substrate-binding-protein
MKKLAPAAAALAATMMLTACGSSAADKAASSASEAGSAAGFPAEVTSCTETLHFDAAPERVVIIGGTSASILKDLGLMDHVVARAGDPGLQDADPDLQSQIEAIPEVESSSNVTGGRVVSTEAILSVRPDLVIGYDSGVERDALRDAGVPLYAPDAFCDEMTLEHATWDNVENEVTKTATIFGVTDKVPALMDEVRGRLDDIEQTAASGQSAAALYLTPGSDVFYAYGTPSMIQPIFEANGLKNAYEDTQERVFDASMEDLLDRNPQWIVLMGDAGTTTEQLTETLMGLNGAADLQAVKDGHVLVLSFRLTDPPNTLSVQGAVRLSQLIGEAQ
>LR134442.1|VEH92791.1|2961907_2963026_-|Probable-ABC-transporter-permease-protein-HI_1471
MSTLQRRRTNRAPAGRAGAVPAGPPRPAAADARSRRGPALRRIGLIAILLAVSPALTIAMGPAAVPLHDVFGVIASHVPGLPVDITWDRTTDAIVWQTRLPRIIGAMAVGAILGVAGVVMQAIVRNPLAEPYVLGVSSGASTGAALAMIVLGISSGTGVGLLAFAGAALATAAVLAVAGRTHSPLHLVLGGLAVGFGFQALTNLIIFSADSAEAGQSVAFWMLGSMARIGNGDLPRMITTAVVLVVAMALLGPVLDALASGDRTAQSVGIEPGRARIGLLIPVSAAVAIAVAGAGGIGFIGLIIPHLMRSFIGHSHRLLVVGTALAAALFCVWTDTVARIVFSPAELPLGVITGLVGAPFLIVIIRRSRATW
>LR134442.1|VEH92794.1|2963704_2964601_-|Sulfite-exporter-TauE/SafE
MKQLVLLAVAGLVAQLIDGSLGMGYGVTSTSVLLAGGLSPAAASASVHMAEVGTTVASGLSHWRLRNVDWWLVLRLGVPGAAGAFLGATVLSGLSTEAARPVMALLLVGLGLFILGRSLRRRDAAVSESRISPHGRRFLVPLGLVGGFVDATGGGGWGPVSTTALVSAGRTSPRTVIGSVDTSEFMVSLAASAGFFVGLGRSGVHLTHVLVLLAGGLIAAPIAAWLVSRIPPKIMGALVGGAIVMTNLGQLFSGLALPQAALLPSAVVLLLVWGTAVLVVATGRGAPRGVSRVAAERV
>LR134442.1|VEH92797.1|2964917_2965511_+|Uncharacterised-protein
MSTTKTPMRRRAGLAAALASLMSVLCVAACTASPSSPPPRSTTGPSTQASTAAYDFSPFAEQTYEQVEVSDDPARVTAFLPELNVSEAHSMAASREDPRSIPGPDPQYWLNAVVTLEQDSVEALAERVDPHELSTLPALAPELQQYVPSGCTFTRLPLKNATPITGATPAGTDSFKLTAFSLSADCSTAIIMAEIVF
>LR134442.1|VEH92800.1|2965817_2967221_-|Uncharacterised-protein
MSQQQGASATPEPDASPEAEQSDATEEVVRPSGTPRRVGGDTSDAPVLPARRGTGGRPRKALRVWAAVLVVVLVLVIGFVTNLLLGGPGTAEFTARRVVYSPRSSDNDWLNTDYAAGYTSWRADGTVLGHSADWTTVLTQRGSSGQDESDQDLVGLDIATGAERWRSAGLRCMGRDAVLAGTVYCARTVKDGKDESDQLVGVDIATGQQRVVHESDDELSFVQAHGEHEGDLIVTEAAGRVTERVLAIGADGEVTWELDLPWWGQCRFLTDHLGCISYADSQIAVIDLATGEFSLSPTEYEHAGDELSVTWLWNGFTTNGNGSGLSRLVFDLDGNRRGVVDAINLPGYGSGGLLFSRDDLLMSSAPTAKAAVDASGDVVAVRFGNSIRMLPSRELIDADFIDLVSVDGSMALARTYTHGGRAGWEDEWAIYSNEGAMLQEMPRFTTIVDGLLVGESGGTSTVHAPGR
>LR134442.1|VEH92803.1|2967602_2968436_-|Fructose-bisphosphate-aldolase
MLTDLASIARACQSERTGLGAFNVIHLENAMMFIDAATRAGRPVVLQISENAVKYHGSLAPIGTGTLVAARAARVPVAVHLDHAESVDLVREAVELGFTSVMYDGSKLPDDVNRATTAEVVDFCHATGVTVEAELGEVGGKNGVHDPTARTAPGDAAAFVADTGVDLLAVAVGSSHAMVTRTAALDTGLIREIADATPVPLVLHGSSGVSDEGMSAAIRAGMVKINVSTHLNKVFTGSVRQTLAENPDMVDSRKWFASAGKKVSAEAERLLRLYAQQ

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Crispr_ID: LR134442_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134442_16

3043188-3044208

Orphan

Consensus_repeat	Method
GGCTCACCCCCGCGTGGCGCGGGGAATTC	PILER-CR
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CRISPRCasFinder
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CRT

16 spacers

The CRISPR arrays of LR134442_16

>merge|LR134442|16|3043188-3044208|PILER-CR,CRISPRCasFinder,CRT
GGCTCACCCCCGCGTGGCGCGGGGAATTCCTGAGCGCCGTCTTGTCGCTGGCCGCCGCCGTGGGCTCACCCCCGCGTGGCGCGGGGAATTCGATCGCCGGCATGGAAATAGGCCACAAAAAGGAGGCTCACCCCCGCGTGGCGCGGGGAATTCGACGCGTCAAACCACGCCAAAACCGCGGCCAAAGGCTCACCCCCGCGTGGCGCGGGGAATTCGACGCGTCAAACCACGCCAAAACCGCGGCCAAAGGCTCACCCCCGCGTGGCGCGGGGAATTCATTGCAGCGCATACTCAAGGCCACCAGACTTCGGGCTCACCCCCGCGTGGCGCGGGGAATTCTGTAGGCGGGTGGCGAGGCTGAACCTCGTGAAAGGCTCACCCCCGCGTGGCGCGGGGAATTCCATAATCACCGCCGCGAGCCACCTGCAGACCCAGGCTCACCCCCGCGTGGCGCGGGGAATTCCTCGTGCGGGGGTGTCCCGTTGCAAGGGTTATCGGCTCACCCCCGCGTGGCGCGGGGAATTCGCTCCTTGGTAGCTGAACACAGTGCCACTGGCTGGCTCACCCCCGCGTGGCGCGGGGAATTCCCTTAATATTCTTAGCGAGGATGACTTCGTGAAGGCTCACCCCCGCGTGGCGCGGGGAATTCGCGCTCGGCCTCACCGGCAAGACCTTCGCCGCGGGCTCACCCCCGCGTGGCGCGGGGAATTCTTGCTGGCAGCAATGGGTTTGTGATTGACACGGGGCTCACCCCCGCGTGGCGCGGGGAATTCCGAGGACAAGCCCTCATGGAGGGGCGATATTAAGGCTCACCCCCGCGTGGCGCGGGGAATTCTATGGCTCATGTGCCGGCGCTGCCGGAAGGCGAGGCTCACCCCCGCGTGGCGCGGGGAATTCCGACAAAGAAGTTTTCCGCATCCTTGACAGGCAGGCTCACCCCCGCGTGGCGCGGGGAATTCGGCTGCACGGTAAGGTTGATGCTAGTGTGGATAGGCTCACCCCCGCGTGGCGCGGGGAATTC

>LR134442|16|7|3043188-3044146|PILER-CR
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CTGAGCGCCGTCTTGTCGCTGGCCGCCGCCGTG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GATCGCCGGCATGGAAATAGGCCACAAAAAGGA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GACGCGTCAAACCACGCCAAAACCGCGGCCAAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GACGCGTCAAACCACGCCAAAACCGCGGCCAAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	ATTGCAGCGCATACTCAAGGCCACCAGACTTCG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	TGTAGGCGGGTGGCGAGGCTGAACCTCGTGAAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CATAATCACCGCCGCGAGCCACCTGCAGACCCA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CTCGTGCGGGGGTGTCCCGTTGCAAGGGTTATC
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GCTCCTTGGTAGCTGAACACAGTGCCACTGGCT
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CCTTAATATTCTTAGCGAGGATGACTTCGTGAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GCGCTCGGCCTCACCGGCAAGACCTTCGCCGCG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	TTGCTGGCAGCAATGGGTTTGTGATTGACACGG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CGAGGACAAGCCCTCATGGAGGGGCGATATTAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	TATGGCTCATGTGCCGGCGCTGCCGGAAGGCGA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CGACAAAGAAGTTTTCCGCATCCTTGACAGGCA
GGCTCACCCCCGCGTGGCGCGGGGAATTC

>LR134442|16|16|3043188-3044208|CRISPRCasFinder
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CTGAGCGCCGTCTTGTCGCTGGCCGCCGCCGTG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GATCGCCGGCATGGAAATAGGCCACAAAAAGGA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GACGCGTCAAACCACGCCAAAACCGCGGCCAAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GACGCGTCAAACCACGCCAAAACCGCGGCCAAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	ATTGCAGCGCATACTCAAGGCCACCAGACTTCG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	TGTAGGCGGGTGGCGAGGCTGAACCTCGTGAAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CATAATCACCGCCGCGAGCCACCTGCAGACCCA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CTCGTGCGGGGGTGTCCCGTTGCAAGGGTTATC
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GCTCCTTGGTAGCTGAACACAGTGCCACTGGCT
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CCTTAATATTCTTAGCGAGGATGACTTCGTGAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GCGCTCGGCCTCACCGGCAAGACCTTCGCCGCG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	TTGCTGGCAGCAATGGGTTTGTGATTGACACGG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CGAGGACAAGCCCTCATGGAGGGGCGATATTAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	TATGGCTCATGTGCCGGCGCTGCCGGAAGGCGA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CGACAAAGAAGTTTTCCGCATCCTTGACAGGCA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GGCTGCACGGTAAGGTTGATGCTAGTGTGGATA
GGCTCACCCCCGCGTGGCGCGGGGAATTC

>LR134442|16|7|3043188-3044208|CRT
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CTGAGCGCCGTCTTGTCGCTGGCCGCCGCCGTG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GATCGCCGGCATGGAAATAGGCCACAAAAAGGA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GACGCGTCAAACCACGCCAAAACCGCGGCCAAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GACGCGTCAAACCACGCCAAAACCGCGGCCAAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	ATTGCAGCGCATACTCAAGGCCACCAGACTTCG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	TGTAGGCGGGTGGCGAGGCTGAACCTCGTGAAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CATAATCACCGCCGCGAGCCACCTGCAGACCCA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CTCGTGCGGGGGTGTCCCGTTGCAAGGGTTATC
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GCTCCTTGGTAGCTGAACACAGTGCCACTGGCT
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CCTTAATATTCTTAGCGAGGATGACTTCGTGAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GCGCTCGGCCTCACCGGCAAGACCTTCGCCGCG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	TTGCTGGCAGCAATGGGTTTGTGATTGACACGG
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CGAGGACAAGCCCTCATGGAGGGGCGATATTAA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	TATGGCTCATGTGCCGGCGCTGCCGGAAGGCGA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	CGACAAAGAAGTTTTCCGCATCCTTGACAGGCA
GGCTCACCCCCGCGTGGCGCGGGGAATTC	GGCTGCACGGTAAGGTTGATGCTAGTGTGGATA
GGCTCACCCCCGCGTGGCGCGGGGAATTC

Protein	Signature genes	Signature genes Name	Protein_function
LR134442.1\|VEH92993.1\|3038549_3039458_+\|Ribokinase	unknown	unknown	gnl\|CDD\|238579
LR134442.1\|VEH92996.1\|3039619_3040060_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH93003.1\|3040937_3042335_+\|Transposase	unknown	unknown	gnl\|CDD\|227708
LR134442.1\|VEH93000.1\|3040516_3040618_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH92998.1\|3040228_3040495_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH92990.1\|3037366_3038455_+\|Degradation-activator	unknown	unknown	gnl\|CDD\|224525
LR134442.1\|VEH93007.1\|3042763_3042958_+\|Predicted-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226181
LR134442.1\|VEH92988.1\|3036228_3037170_-\|Pyrimidine-specific-ribonucleoside-hydrolase-rihB	unknown	unknown	gnl\|CDD\|239117
LR134442.1\|VEH93005.1\|3042350_3042623_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134442.1\|VEH92985.1\|3034795_3036166_-\|Purine-nucleoside-transport-protein-nupG	unknown	unknown	gnl\|CDD\|224883

Protein	Function_ID	Function_description	E-value
LR134442.1\|VEH92993.1\|3038549_3039458_+\|Ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	4.22201e-95
LR134442.1\|VEH92985.1\|3034795_3036166_-\|Purine-nucleoside-transport-protein-nupG	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	1.54308e-110
LR134442.1\|VEH93003.1\|3040937_3042335_+\|Transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	4.94062e-12
LR134442.1\|VEH92988.1\|3036228_3037170_-\|Pyrimidine-specific-ribonucleoside-hydrolase-rihB	gnl\|CDD\|239117	cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine and cytidine, E. coli RihB prefers cytidine over uridine. S. cerevisiae URH1 prefers uridine over cytidine. .	3.12376e-149
LR134442.1\|VEH92990.1\|3037366_3038455_+\|Degradation-activator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.07048e-87
LR134442.1\|VEH93007.1\|3042763_3042958_+\|Predicted-transcriptional-regulator	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	1.77695e-16

>LR134442.1|VEH93007.1|3042763_3042958_+|Predicted-transcriptional-regulator
MTLVELSEQVGITVVNLSVLKNNRAKAIRFSTLVAICEALGCDVGDLLEVTTEAVEPDEPGTEG
>LR134442.1|VEH93005.1|3042350_3042623_+|Uncharacterised-protein
MEIRALAQEHALLVTIDTSSPEAVPAGYEGVIEPAGGLGTQYSYAGAPAWALVTANFMAFLTHALSRLHERTTRLAAENTALLEQTEGLV
>LR134442.1|VEH93003.1|3040937_3042335_+|Transposase
MQDELDFLSPAAVSRSLTITGRGSTALWDSLRRVYTDLGFEVLADDVFAQLVLARVIKPTSKAGSIRELDSLGIPHAGLRSVFRCLARVQAEDYRSKISRLCFENARVDGNLTLVLYDVTTLYFEAEREDELRKVGFSKERRVDPQIVVGLLTDRTGFPLELTCWEGGKAETLTMLPTVMGFLTRHGLGDLVVVADAGMLSAANLAALDEAGLKFIVGSRQVKAPIDLESHFHWHGDSFEDGQVIDTITVRHGNCREAVSDSRFRDEPVWDPEVHSGSWRAVWAYSRKRAVKDTRNLKKMTDRAIAVINGTKTVKSPRFVKTLQGKKILDEKALDRAHRLVGLKGYVTNMPATRISAAELIADYHELWLIEKSFRMSKSDLKARPVFHHTREAIEAHLTIVMAALAVSHRLQTITGKSVAKIIETLEPIHEMNVNIAGQTLPAHDQITPAAQTILDTLGLTWPPH
>LR134442.1|VEH93000.1|3040516_3040618_+|Uncharacterised-protein
MAFLTHALSRLHERTTRLAAENTALLEQTEGLV
>LR134442.1|VEH92998.1|3040228_3040495_+|Uncharacterised-protein
MPWSASSPPTGDNPFPGTGRISVTISAAVIALCLAIPPCLEIRALAQEHALLVTIDTSSPEAVPAGYEGVIEPAGGPGTQHFYAGAPA
>LR134442.1|VEH92996.1|3039619_3040060_+|Uncharacterised-protein
MTEWSFEAQMQAVEALSDACARWMRSSHIEEMSIDVQAVGTRAGVHSRTLRSSGLMRRGGWKDNIVPREVVEPAVQVRTAMARPGGGTWTRGVFTMNKQDYQLVSDFDYDHEPVLNPPYGPEDVADELKLFPRDPKATPDWMKQGQ
>LR134442.1|VEH92993.1|3038549_3039458_+|Ribokinase
MGRVIVIGSINQDITVTVDRLPEPGETLLGTSLTYRLGGKGANQSAAAAHAGAPSLFIGRVGADQAGMVLVDELSSHGVDVSHLLVDEDATTGIALITVSASGENTIILDAGANGRVTAEQAREAVEPSGEDVIVLQGEIGAEVNEQVIRWAHQVGARTVFNIAPAYEVAPEVLALVDCVVVNETEAGIVLGRPAPQDADSALDAAAAVVDLGPRLALVTLGGHGAAWSDGDRSEHVPALRLGPVVDTTGAGDAAVGALAAALAMGWDFPEAVRAGVRAGSTAVLAEGAAVSYAGIEPLQAP
>LR134442.1|VEH92990.1|3037366_3038455_+|Degradation-activator
MTNPNEPGPTVPTGSSQGIEAQSVNRAPRARPTIKDVAALAGVSLGTASRVLTNHPATSAAAREKVRAAALSLGYQVNLRARSLRTSRTNAIGLIVPDIRNPFFAGLAQSIQSEGLDDGVTVFIASSQEDPDQQDQHLRTLLKEQVDGLIVVPLGGMTPMLEQLRDQQIPFVTVDRTLDELKAPSVDADPLPGVYAAVEALRNLGHRRIVYVGSLLDSSTGRERLLAFDNAGDALLPGGDARMVIAAPLDDDGWLRELDSFLDDGATAAIFGHSRHALRAFGHLRDAGRVIGDRGVSLVSFDDLDVFSLLTPAITAITQHPEQLASKAVAMLSATIGGDRPGSVRIETSLIPRESLAAPPAG
>LR134442.1|VEH92988.1|3036228_3037170_-|Pyrimidine-specific-ribonucleoside-hydrolase-rihB
MAASIILDCDPGHDDAIAILMALGSPQIDLIGITTVGGNHGLDKVTYNARAVCEVAGFPEVPVHAGARRPLIREAIDAAGIHGETGLDGVELPEPTRALPDRHAVDWMIGEIMAREPGTVVLVPTGPLTNIALAARLEPRIVDRVKEVVLMGGAHGPGNATPVAEFNILCDPEAAHIVFNESWPVTMIGLDVTHRALCTPEVQGRLCAANPRLAGVVNGLMDFFRATYQDQQAFPDPPTHDPCAVAHVIDPTIVQTRRAPLDVEIRGQATYGMTIADMRAEEDPECRTRVGTDLDVERFWNTVEDAFRRLPQG
>LR134442.1|VEH92985.1|3034795_3036166_-|Purine-nucleoside-transport-protein-nupG
MYLALNVVGIIVFLAIGLVFSHDRKKIDWKSVGILAALNVALAWILTSFPWGRAAVQGAAAAFNELVDVAWAGINFALANWVGADGVNPEPVNFVVSALLPILLILPIFDILTYIGFLPWLIKWIGRILSFITRRPKFETFYSIEMMFLGNTEAPVVSKLQLQKMSPARNVVVAMMTMSCVTASILAAYIQMMPAEYILTAVPLNCLNALIVTSMLYPVDVTAEEDVIYTYEDGLAEDAEKQLVPAGVAAEQAPEAQPAETSPAAGAAAKPGTGGWPAKIFKRDPNRPKKEPFFSFLGDSILNGGRLVLIVTANVITFVALAALIDKILGAIWSPLSLESILGVFMFIPSLLLGLDPATAWDMSQIMGLKLVTNEFVAMGQVTDTITTFSPHHQAVLTVFLTSFANFGTLGMIIGTFKGIVDKERNELIAKNVGRMLLSGILVSLLSAGMVGLFVW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134442_8	8.31\|2035984\|36\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2035984-2036019	36	AY320035	Bacteriophage VWB, complete genome	6586-6621	2	0.944
LR134442_8	8.31\|2035984\|36\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2035984-2036019	36	NC_005345	Streptomyces phage VWB, complete genome	6586-6621	2	0.944
LR134442_8	8.31\|2035984\|36\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2035984-2036019	36	KT221034	Streptomyces phage SF3, complete genome	35043-35078	3	0.917
LR134442_8	8.26\|2035623\|38\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2035623-2035660	38	NZ_CP029051	Miniimonas sp. S16 plasmid pS16-2, complete sequence	2463-2500	4	0.895
LR134442_10	10.1\|2209695\|31\|LR134442\|CRISPRCasFinder	2209695-2209725	31	CP021131	Meiothermus taiwanensis strain WR-220 plasmid pMtWR-220, complete sequence	25490-25520	5	0.839
LR134442_15	15.16\|2956463\|38\|LR134442\|CRISPRCasFinder,CRT	2956463-2956500	38	NZ_CP045327	Mycobacterium sp. THAF192 plasmid pTHAF192_b, complete sequence	35793-35830	5	0.868
LR134442_8	8.17\|2034979\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034979-2035013	35	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	219614-219648	6	0.829
LR134442_8	8.17\|2034979\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034979-2035013	35	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	166391-166425	6	0.829
LR134442_8	8.17\|2034979\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034979-2035013	35	NZ_CP022569	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence	196774-196808	6	0.829
LR134442_8	8.26\|2035623\|38\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2035623-2035660	38	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	46490-46527	6	0.842
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	HM486077	Tsukamurella phage TPA2, complete sequence	23746-23780	7	0.8
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	MN234196	Gordonia phage CloverMinnie, complete genome	22588-22622	7	0.8
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	NC_015210	Tsukamurella phage TPA2, complete genome	23746-23780	7	0.8
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	NC_023722	Rhodococcus phage ReqiPine5, complete genome	23261-23295	7	0.8
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	NC_030917	Gordonia phage OneUp, complete genome	23726-23760	7	0.8
LR134442_10	10.1\|2209695\|31\|LR134442\|CRISPRCasFinder	2209695-2209725	31	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	903146-903176	7	0.774
LR134442_16	16.1\|3043217\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043217-3043249	33	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	49475-49507	7	0.788
LR134442_8	8.4\|2034043\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034043-2034077	35	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	744855-744889	8	0.771
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	KY613597	Corynebacterium phage LGCM-V2, complete genome	24220-24254	8	0.771
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	KY624612	Corynebacterium phage LGCM-V6, complete genome	24220-24254	8	0.771
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	KY566218	Corynebacterium phage LGCM-VI, complete genome	24220-24254	8	0.771
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	KY624613	Corynebacterium phage LGCM-V5, complete genome	24220-24254	8	0.771
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	KY624615	Corynebacterium phage LGCM-V8, complete genome	24220-24254	8	0.771
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	KY624611	Corynebacterium phage LGCM-V4, complete genome	24223-24257	8	0.771
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	KY624616	Corynebacterium phage LGCM-V9, complete genome	24220-24254	8	0.771
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	KY624610	Corynebacterium phage LGCM-V3, complete genome	24220-24254	8	0.771
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	KY624614	Corynebacterium phage LGCM-V7, complete genome	24220-24254	8	0.771
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	MN369758	Gordonia phage NHagos, complete genome	21180-21214	8	0.771
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	NC_048169	Gordonia phage BrutonGaster, complete genome	22621-22655	8	0.771
LR134442_10	10.1\|2209695\|31\|LR134442\|CRISPRCasFinder	2209695-2209725	31	NC_010851	Streptomyces sp. FR1 plasmid pFRL1, complete sequence	41102-41132	8	0.742
LR134442_15	15.8\|2955880\|37\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2955880-2955916	37	NZ_CP023066	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631d, complete sequence	87050-87086	8	0.784
LR134442_15	15.8\|2955880\|37\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2955880-2955916	37	NZ_CP015522	Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence	8423-8459	8	0.784
LR134442_16	16.1\|3043217\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043217-3043249	33	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1405388-1405420	8	0.758
LR134442_16	16.7\|3043589\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043589-3043621	33	KU160644	Arthrobacter phage Galaxy, complete genome	23817-23849	8	0.758
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NC_011143	Phenylobacterium zucineum HLK1 plasmid, complete sequence	273324-273356	8	0.758
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NC_011143	Phenylobacterium zucineum HLK1 plasmid, complete sequence	17756-17788	8	0.758
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NC_011143	Phenylobacterium zucineum HLK1 plasmid, complete sequence	324330-324362	8	0.758
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	AP017627	Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome	36309-36341	8	0.758
LR134442_16	16.12\|3043899\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043899-3043931	33	NZ_CP046704	Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence	141919-141951	8	0.758
LR134442_16	16.14\|3044023\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3044023-3044055	33	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2710026-2710058	8	0.758
LR134442_16	16.15\|3044085\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3044085-3044117	33	MT601270	Bacillus phage vB_BsuM-Goe9, complete genome	96814-96846	8	0.758
LR134442_16	16.15\|3044085\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3044085-3044117	33	MT601271	Bacillus phage vB_BsuM-Goe10, complete genome	94019-94051	8	0.758
LR134442_8	8.12\|2034623\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034623-2034657	35	NC_024123	Pseudomonas phage KPP25 DNA, complete sequence	3633-3667	9	0.743
LR134442_8	8.12\|2034623\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034623-2034657	35	NC_041964	Pseudomonas phage R18 DNA, complete genome	59855-59889	9	0.743
LR134442_8	8.16\|2034908\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034908-2034942	35	MK875791	Gordonia phage Yakult, complete genome	11750-11784	9	0.743
LR134442_8	8.17\|2034979\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034979-2035013	35	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	713786-713820	9	0.743
LR134442_8	8.18\|2035050\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2035050-2035084	35	MH572512	Microviridae sp. isolate SD_HF_15, complete genome	1603-1637	9	0.743
LR134442_8	8.26\|2035623\|38\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2035623-2035660	38	NZ_CP047182	Rathayibacter festucae strain VKM Ac-2802 plasmid unnamed2, complete sequence	39566-39603	9	0.763
LR134442_14	14.8\|2953649\|37\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2953649-2953685	37	MK376343	Pseudomonas sp. strain ANT_J16 plasmid pA16J1, complete sequence	19288-19324	9	0.757
LR134442_15	15.8\|2955880\|37\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2955880-2955916	37	NZ_CP039892	Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499c, complete sequence	4211-4247	9	0.757
LR134442_15	15.8\|2955880\|37\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2955880-2955916	37	NZ_CP031193	Humibacter sp. BT305 plasmid unnamed1	4565-4601	9	0.757
LR134442_15	15.8\|2955880\|37\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2955880-2955916	37	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	11387-11423	9	0.757
LR134442_15	15.8\|2955880\|37\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2955880-2955916	37	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	159274-159310	9	0.757
LR134442_15	15.17\|2956537\|36\|LR134442\|CRT	2956537-2956572	36	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	314981-315016	9	0.75
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP013588	Rhizobium phaseoli strain N161 plasmid pRphaN161c, complete sequence	305165-305197	9	0.727
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	1154972-1155004	9	0.727
LR134442_16	16.12\|3043899\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043899-3043931	33	NZ_CP046704	Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence	141265-141297	9	0.727
LR134442_16	16.12\|3043899\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043899-3043931	33	NZ_CP046704	Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence	141697-141729	9	0.727
LR134442_16	16.14\|3044023\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3044023-3044055	33	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	168520-168552	9	0.727
LR134442_8	8.4\|2034043\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034043-2034077	35	NZ_CP028969	Aminobacter sp. MSH1 plasmid pUSP1, complete sequence	55015-55049	10	0.714
LR134442_8	8.4\|2034043\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034043-2034077	35	NZ_CP026266	Aminobacter sp. MSH1 plasmid pAM01, complete sequence	52315-52349	10	0.714
LR134442_8	8.17\|2034979\|35\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2034979-2035013	35	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	332424-332458	10	0.714
LR134442_10	10.1\|2209695\|31\|LR134442\|CRISPRCasFinder	2209695-2209725	31	NC_014213	Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence	129817-129847	10	0.677
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP013072	Sphingobium indicum B90A plasmid pSRL2, complete sequence	89529-89561	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	MN234216	Streptomyces phage Gilgamesh, complete genome	62196-62228	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP020899	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence	98616-98648	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NC_007765	Rhizobium etli CFN 42 plasmid p42e, complete sequence	85994-86026	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP005190	Sphingobium sp. MI1205 plasmid pMI1, complete sequence	74322-74354	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP021028	Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence	101624-101656	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP013634	Rhizobium sp. N324 plasmid pRspN324d, complete sequence	107982-108014	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP020909	Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence	85834-85866	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP013529	Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence	89239-89271	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP013539	Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence	95026-95058	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NC_021908	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence	85826-85858	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	97764-97796	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP013582	Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence	89239-89271	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	97764-97796	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	97764-97796	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	97764-97796	10	0.697
LR134442_16	16.11\|3043837\|33\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	3043837-3043869	33	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	98167-98199	10	0.697
LR134442_2	2.3\|297318\|34\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	297318-297351	34	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	117073-117106	11	0.676
LR134442_2	2.3\|297318\|34\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	297318-297351	34	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	168534-168567	11	0.676
LR134442_2	2.3\|297318\|34\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	297318-297351	34	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	127909-127942	11	0.676
LR134442_15	15.14\|2956315\|34\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2956315-2956348	34	HM486077	Tsukamurella phage TPA2, complete sequence	16038-16071	11	0.676
LR134442_15	15.14\|2956315\|34\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2956315-2956348	34	NC_015210	Tsukamurella phage TPA2, complete genome	16038-16071	11	0.676
LR134442_15	15.14\|2956315\|34\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2956315-2956348	34	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	279049-279082	12	0.647
LR134442_15	15.14\|2956315\|34\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2956315-2956348	34	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	304292-304325	12	0.647
LR134442_15	15.14\|2956315\|34\|LR134442\|PILER-CR,CRISPRCasFinder,CRT	2956315-2956348	34	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	304292-304325	12	0.647

1. spacer 8.31|2035984|36|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to AY320035 (Bacteriophage VWB, complete genome) position: , mismatch: 2, identity: 0.944

cacagctcgtacgcctgcgacagcgggtcgccgggc	CRISPR spacer
cacagctcgttcgcctgcgacagggggtcgccgggc	Protospacer
********** ************ ************

2. spacer 8.31|2035984|36|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_005345 (Streptomyces phage VWB, complete genome) position: , mismatch: 2, identity: 0.944

cacagctcgtacgcctgcgacagcgggtcgccgggc	CRISPR spacer
cacagctcgttcgcctgcgacagggggtcgccgggc	Protospacer
********** ************ ************

3. spacer 8.31|2035984|36|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to KT221034 (Streptomyces phage SF3, complete genome) position: , mismatch: 3, identity: 0.917

cacagctcgtacgcctgcgacagcgggtcgccgggc	CRISPR spacer
cacatctcgtacgactgcgacagcgggtcgccggcc	Protospacer
**** ******** ******************** *

4. spacer 8.26|2035623|38|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029051 (Miniimonas sp. S16 plasmid pS16-2, complete sequence) position: , mismatch: 4, identity: 0.895

gtcacgatcatgggctgggccaagtgggtcgccctggc	CRISPR spacer
aactcgatcatgggctgggcgaagtgggtcgccctggc	Protospacer
. * **************** *****************

5. spacer 10.1|2209695|31|LR134442|CRISPRCasFinder matches to CP021131 (Meiothermus taiwanensis strain WR-220 plasmid pMtWR-220, complete sequence) position: , mismatch: 5, identity: 0.839

-ctgccccggggaggggggccgggagagccac	CRISPR spacer
gctg-cccagggaggggggccgggtgagcctg	Protospacer
 *** ***.*************** *****

6. spacer 15.16|2956463|38|LR134442|CRISPRCasFinder,CRT matches to NZ_CP045327 (Mycobacterium sp. THAF192 plasmid pTHAF192_b, complete sequence) position: , mismatch: 5, identity: 0.868

ttgctgatcgcaacgtgcgtgtgcaggtcggggtcacc	CRISPR spacer
ttcgagatcgcgacgtgggtgtgcaggtcggggtcacc	Protospacer
**   ******.***** ********************

7. spacer 8.17|2034979|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.829

atggtggttccgctgccggtggcgccgccgctggc	CRISPR spacer
gagatggtcgcgctgccggtggcgccgccgctgtc	Protospacer
. *.****. *********************** *

8. spacer 8.17|2034979|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 6, identity: 0.829

atggtggttccgctgccggtggcgccgccgctggc	CRISPR spacer
gagatggtcgcgctgccggtggcgccgccgctgtc	Protospacer
. *.****. *********************** *

9. spacer 8.17|2034979|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 6, identity: 0.829

atggtggttccgctgccggtggcgccgccgctggc----	CRISPR spacer
atggtggtgccgctgccggtggtg----cgctggccgaa	Protospacer
******** *************.*    *******

10. spacer 8.26|2035623|38|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 6, identity: 0.842

gtcacga--tcatgggctgggccaagtgggtcgccctggc	CRISPR spacer
--caggaagtcatgggctgggtcaagtggatcgccctggg	Protospacer
  ** **  ************.*******.*********

11. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to HM486077 (Tsukamurella phage TPA2, complete sequence) position: , mismatch: 7, identity: 0.8

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcggcaccgtctacaacaacggcatccgcaag	Protospacer
* ***..************************  .

12. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to MN234196 (Gordonia phage CloverMinnie, complete genome) position: , mismatch: 7, identity: 0.8

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tcatcggcaccgtctacaacaacggcatcaagaag	Protospacer
*****..********************** .* .

13. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_015210 (Tsukamurella phage TPA2, complete genome) position: , mismatch: 7, identity: 0.8

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcggcaccgtctacaacaacggcatccgcaag	Protospacer
* ***..************************  .

14. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_023722 (Rhodococcus phage ReqiPine5, complete genome) position: , mismatch: 7, identity: 0.8

tcatcaacaccgtctacaacaacggcatccggcgc----	CRISPR spacer
tgatcggcaccgtctacaacaacggcat----cgccaag	Protospacer
* ***..*********************    ***

15. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_030917 (Gordonia phage OneUp, complete genome) position: , mismatch: 7, identity: 0.8

tcatcaacaccgtctacaacaacggcat--ccggcgc	CRISPR spacer
ccatcaacaccgtcttcaacgacggcctggtcggc--	Protospacer
.************** ****.***** *  .****

16. spacer 10.1|2209695|31|LR134442|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 7, identity: 0.774

ctgccccggggaggggggccgggagagccac	CRISPR spacer
gtgccccgcggagggggggcgggagagggga	Protospacer
 ******* ********* ********  .

17. spacer 16.1|3043217|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 7, identity: 0.788

ctgagcgccgtcttgtcgctggccgccgccgtg	CRISPR spacer
cgcaccgccgtgatgtcgctggccgccgccgcc	Protospacer
*  * ******  ******************.

18. spacer 8.4|2034043|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

ctgtccaagcagctcggggtgaccaccgccgacgt	CRISPR spacer
gcgtccaagcagcgcggggcgaccaccatcgtcat	Protospacer
 .*********** *****.*******..** *.*

19. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to KY613597 (Corynebacterium phage LGCM-V2, complete genome) position: , mismatch: 8, identity: 0.771

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcaacaccgtctacaataacggcattctcaaa	Protospacer
* *****************.********.*   .

20. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to KY624612 (Corynebacterium phage LGCM-V6, complete genome) position: , mismatch: 8, identity: 0.771

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcaacaccgtctacaataacggcattctcaaa	Protospacer
* *****************.********.*   .

21. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to KY566218 (Corynebacterium phage LGCM-VI, complete genome) position: , mismatch: 8, identity: 0.771

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcaacaccgtctacaataacggcattctcaaa	Protospacer
* *****************.********.*   .

22. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to KY624613 (Corynebacterium phage LGCM-V5, complete genome) position: , mismatch: 8, identity: 0.771

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcaacaccgtctacaataacggcattctcaaa	Protospacer
* *****************.********.*   .

23. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to KY624615 (Corynebacterium phage LGCM-V8, complete genome) position: , mismatch: 8, identity: 0.771

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcaacaccgtctacaataacggcattctcaaa	Protospacer
* *****************.********.*   .

24. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to KY624611 (Corynebacterium phage LGCM-V4, complete genome) position: , mismatch: 8, identity: 0.771

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcaacaccgtctacaataacggcattctcaaa	Protospacer
* *****************.********.*   .

25. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to KY624616 (Corynebacterium phage LGCM-V9, complete genome) position: , mismatch: 8, identity: 0.771

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcaacaccgtctacaataacggcattctcaaa	Protospacer
* *****************.********.*   .

26. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to KY624610 (Corynebacterium phage LGCM-V3, complete genome) position: , mismatch: 8, identity: 0.771

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcaacaccgtctacaataacggcattctcaaa	Protospacer
* *****************.********.*   .

27. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to KY624614 (Corynebacterium phage LGCM-V7, complete genome) position: , mismatch: 8, identity: 0.771

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcaacaccgtctacaataacggcattctcaaa	Protospacer
* *****************.********.*   .

28. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to MN369758 (Gordonia phage NHagos, complete genome) position: , mismatch: 8, identity: 0.771

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tgatcaacaccgtttacaacaacgggatcaagaag	Protospacer
* ***********.*********** *** .* .

29. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_048169 (Gordonia phage BrutonGaster, complete genome) position: , mismatch: 8, identity: 0.771

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
ccatcaacaccgtcttcaacgacggcctggtgggc	Protospacer
.************** ****.***** *   * **

30. spacer 10.1|2209695|31|LR134442|CRISPRCasFinder matches to NC_010851 (Streptomyces sp. FR1 plasmid pFRL1, complete sequence) position: , mismatch: 8, identity: 0.742

ctgccccggggaggggggccgggagagccac	CRISPR spacer
caggaccggggcggggggccgggagggcagg	Protospacer
* *  ****** *************.** .

31. spacer 15.8|2955880|37|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023066 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631d, complete sequence) position: , mismatch: 8, identity: 0.784

catcttccaggacgtgtacgagtgggccggtgaagag	CRISPR spacer
ccttttccaggacgtgttcgagtgggccgggcatctg	Protospacer
* *.************* ************  *   *

32. spacer 15.8|2955880|37|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015522 (Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.784

catcttccaggacgtgtacgagtgggccggtgaagag	CRISPR spacer
cctgttccaggacctgtacgagtgggcgggccaggac	Protospacer
* * ********* ************* **. *.**

33. spacer 16.1|3043217|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

ctgagcgccgtcttgtcgctggccgccgccgtg	CRISPR spacer
tccggcgccgtcttgtcgcgggtcgccgcctcg	Protospacer
.. .*************** **.******* .*

34. spacer 16.7|3043589|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to KU160644 (Arthrobacter phage Galaxy, complete genome) position: , mismatch: 8, identity: 0.758

cataatcaccgccgcgagccacctgcagaccca	CRISPR spacer
cgaaatcaccgcctcgagccgcctgcagctcgt	Protospacer
*. ********** ******.******* .*

35. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_011143 (Phenylobacterium zucineum HLK1 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcaccggcatggccaaggccttc	Protospacer
******************* *.**   *** .

36. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_011143 (Phenylobacterium zucineum HLK1 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcaccggcatggccaaggccttc	Protospacer
******************* *.**   *** .

37. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_011143 (Phenylobacterium zucineum HLK1 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcaccggcatggccaaggccttc	Protospacer
******************* *.**   *** .

38. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to AP017627 (Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome) position: , mismatch: 8, identity: 0.758

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
tcgctcggccgcaccggcaagagctggtcggtg	Protospacer
 ********* *********** **   * *.*

39. spacer 16.12|3043899|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046704 (Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence) position: , mismatch: 8, identity: 0.758

ttgctggcagcaatgggtttgtgattgacacgg	CRISPR spacer
ttaatggcagcaatggctttgtgattaacggca	Protospacer
**. ************ *********.**.  .

40. spacer 16.14|3044023|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

tatggctcatgtgccggcgctgccggaaggcga	CRISPR spacer
tgcgcggcatgttccggcgcagccggaaggcaa	Protospacer
*..*   ***** ******* **********.*

41. spacer 16.15|3044085|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to MT601270 (Bacillus phage vB_BsuM-Goe9, complete genome) position: , mismatch: 8, identity: 0.758

cgacaaagaagttttccgcatccttgacaggca	CRISPR spacer
ctttatagaagttttccgcatcttggacagtta	Protospacer
*  .* ****************.* ***** .*

42. spacer 16.15|3044085|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to MT601271 (Bacillus phage vB_BsuM-Goe10, complete genome) position: , mismatch: 8, identity: 0.758

cgacaaagaagttttccgcatccttgacaggca	CRISPR spacer
ctttatagaagttttccgcatcttggacagtta	Protospacer
*  .* ****************.* ***** .*

43. spacer 8.12|2034623|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_024123 (Pseudomonas phage KPP25 DNA, complete sequence) position: , mismatch: 9, identity: 0.743

atgccggtgggcggcaggccgcgttcaccgaacag	CRISPR spacer
cttgcggtgggcggcagcccgctttcaccgcggcg	Protospacer
 *  ************* **** ******* .  *

44. spacer 8.12|2034623|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_041964 (Pseudomonas phage R18 DNA, complete genome) position: , mismatch: 9, identity: 0.743

atgccggtgggcggcaggccgcgttcaccgaacag	CRISPR spacer
cttgcggtgggcggcagcccgctttcaccgcggcg	Protospacer
 *  ************* **** ******* .  *

45. spacer 8.16|2034908|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to MK875791 (Gordonia phage Yakult, complete genome) position: , mismatch: 9, identity: 0.743

tcatcaacaccgtctacaacaacggcatccggcgc	CRISPR spacer
tcatcaacaccgtctggaacaacggcctgctcaag	Protospacer
***************. ********* * *   .

46. spacer 8.17|2034979|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 9, identity: 0.743

atggtggttccgctgccggtggcgccgccgctggc	CRISPR spacer
ctacgactgccgctgccgctgccgccgccgctggc	Protospacer
 *.  . * ********* ** *************

47. spacer 8.18|2035050|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to MH572512 (Microviridae sp. isolate SD_HF_15, complete genome) position: , mismatch: 9, identity: 0.743

tcgac-cgcgtaggaggcggactgttcggcggccca	CRISPR spacer
-ggacaggcgcaggaggcggactggtcggcggaggc	Protospacer
  ***  ***.************* *******

48. spacer 8.26|2035623|38|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047182 (Rathayibacter festucae strain VKM Ac-2802 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.763

gtcacgatcatgggctgggccaagtgggtcgccctggc	CRISPR spacer
accgtcgtcatgggctgggccaagtgggtcggcctcgg	Protospacer
..*.. .************************ *** *

49. spacer 14.8|2953649|37|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to MK376343 (Pseudomonas sp. strain ANT_J16 plasmid pA16J1, complete sequence) position: , mismatch: 9, identity: 0.757

ctgcacaccttgtccgcgccgtccctgacggcacgac	CRISPR spacer
atgcacaccttgtccgcgccgtcggtgaaacagcgcc	Protospacer
 **********************  *** .  .** *

50. spacer 15.8|2955880|37|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039892 (Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499c, complete sequence) position: , mismatch: 9, identity: 0.757

catcttccaggacgtgtacgagtgggccggtgaagag	CRISPR spacer
tatcttccaagacgtgtacgagtgggctggacataca	Protospacer
.********.*****************.**  * . .

51. spacer 15.8|2955880|37|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031193 (Humibacter sp. BT305 plasmid unnamed1) position: , mismatch: 9, identity: 0.757

catcttccaggacgtgtacgagtgggccggtgaagag	CRISPR spacer
gctcttccaagacgtctacgagtgggccggccagctg	Protospacer
  *******.***** **************. *.  *

52. spacer 15.8|2955880|37|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.757

catcttccaggacgtgtacgagtgggccggtgaagag	CRISPR spacer
cttgttccaggacgtctacgactgggccggccagctg	Protospacer
* * *********** ***** ********. *.  *

53. spacer 15.8|2955880|37|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.757

catcttccaggacgtgtacgagtgggccggtgaagag	CRISPR spacer
cttgttccaggacgtctacgactgggccggccagctg	Protospacer
* * *********** ***** ********. *.  *

54. spacer 15.17|2956537|36|LR134442|CRT matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 9, identity: 0.75

tgcaactcacggccaagaagatcgagagcccggagg-----	CRISPR spacer
ggcaactcatggccaagaaaatcgaga-----aaggcacgc	Protospacer
 ********.*********.*******     .***

55. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013588 (Rhizobium phaseoli strain N161 plasmid pRphaN161c, complete sequence) position: , mismatch: 9, identity: 0.727

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
ggcttcggcctctccgccaagaccttcgacaac	Protospacer
*  .******** *** *********** *.

56. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
ggcttcggccgcaccggcaagacgttcggctac	Protospacer
*  .****** ************ **** *

57. spacer 16.12|3043899|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046704 (Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence) position: , mismatch: 9, identity: 0.727

ttgctggcagcaatgggtttgtgattgacacgg	CRISPR spacer
tcaatggcagcaatggctttgtgattaacggca	Protospacer
*.. ************ *********.**.  .

58. spacer 16.12|3043899|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046704 (Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence) position: , mismatch: 9, identity: 0.727

ttgctggcagcaatgggtttgtgattgacacgg	CRISPR spacer
tgaatggcagcaatggctttgtgattaacggca	Protospacer
* . ************ *********.**.  .

59. spacer 16.14|3044023|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 9, identity: 0.727

tatggctcatgtgccggcgctgccggaaggcga	CRISPR spacer
gccgctgcatctgccgccgctgccggaaggcta	Protospacer
  .* . *** ***** ************** *

60. spacer 8.4|2034043|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028969 (Aminobacter sp. MSH1 plasmid pUSP1, complete sequence) position: , mismatch: 10, identity: 0.714

ctgtccaagcagctcggggtgaccaccgccgacgt	CRISPR spacer
atcgagaaggagctcggtgtgaccaccgccggagc	Protospacer
 *    *** ******* *************. *.

61. spacer 8.4|2034043|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026266 (Aminobacter sp. MSH1 plasmid pAM01, complete sequence) position: , mismatch: 10, identity: 0.714

ctgtccaagcagctcggggtgaccaccgccgacgt	CRISPR spacer
atcgagaaggagctcggtgtgaccaccgccggagc	Protospacer
 *    *** ******* *************. *.

62. spacer 8.17|2034979|35|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.714

atggtggttccgctgccggtggcgccgccgctggc	CRISPR spacer
gaactggcgccgctgccggtggcgccgccggaacc	Protospacer
. . ***. *********************  . *

63. spacer 10.1|2209695|31|LR134442|CRISPRCasFinder matches to NC_014213 (Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence) position: , mismatch: 10, identity: 0.677

ctgccccggggaggggggccgggagagccac	CRISPR spacer
ctgccctggggaggtgggccggggctcaggt	Protospacer
******.******* ********.     ..

64. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013072 (Sphingobium indicum B90A plasmid pSRL2, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gacaacggcctcaccggcaagaccaacgcaagc	Protospacer
*    *******************  *** .

65. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to MN234216 (Streptomyces phage Gilgamesh, complete genome) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
atcaacagcctcaccggcaagaccgtcaccgtc	Protospacer
..   *.***************** **.***.

66. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020899 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

67. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_007765 (Rhizobium etli CFN 42 plasmid p42e, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

68. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP005190 (Sphingobium sp. MI1205 plasmid pMI1, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gacaacggcctcaccggcaagaccaacgcaagc	Protospacer
*    *******************  *** .

69. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

70. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013634 (Rhizobium sp. N324 plasmid pRspN324d, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccgggacgctc	Protospacer
*************.****.*****   .*  .

71. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

72. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013529 (Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

73. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013539 (Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

74. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_021908 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

75. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

76. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013582 (Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

77. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

78. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

79. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

80. spacer 16.11|3043837|33|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 10, identity: 0.697

gcgctcggcctcaccggcaagaccttcgccgcg	CRISPR spacer
gcgctcggcctcatcggcgagaccggaacgctc	Protospacer
*************.****.*****   .*  .

81. spacer 2.3|297318|34|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 11, identity: 0.676

tcggagccggtgcgccactcgcgcggcacgacaa	CRISPR spacer
atcggcccgttgcgccattcgcgcggcacgcggt	Protospacer
 . *. *** *******.************  .

82. spacer 2.3|297318|34|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 11, identity: 0.676

tcggagccggtgcgccactcgcgcggcacgacaa	CRISPR spacer
atcggcccgttgcgccattcgcgcggcacgcggt	Protospacer
 . *. *** *******.************  .

83. spacer 2.3|297318|34|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 11, identity: 0.676

tcggagccggtgcgccactcgcgcggcacgacaa	CRISPR spacer
atcggcccgttgcgccattcgcgcggcacgcggt	Protospacer
 . *. *** *******.************  .

84. spacer 15.14|2956315|34|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to HM486077 (Tsukamurella phage TPA2, complete sequence) position: , mismatch: 11, identity: 0.676

gttgaccgcggcggctaagaccgcgcagtggcgg	CRISPR spacer
caccaccgcggcggcgaagaccgtgcagcccggc	Protospacer
  . *********** *******.****.   *

85. spacer 15.14|2956315|34|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NC_015210 (Tsukamurella phage TPA2, complete genome) position: , mismatch: 11, identity: 0.676

gttgaccgcggcggctaagaccgcgcagtggcgg	CRISPR spacer
caccaccgcggcggcgaagaccgtgcagcccggc	Protospacer
  . *********** *******.****.   *

86. spacer 15.14|2956315|34|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

gttgaccgcggcggctaagaccgcgcagtggcgg	CRISPR spacer
cgaatatgccgcggataagaccgcgcagtggaaa	Protospacer
   .  .** **** **************** ..

87. spacer 15.14|2956315|34|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 12, identity: 0.647

gttgaccgcggcggctaagaccgcgcagtggcgg	CRISPR spacer
cgaatatgccgcggataagaccgcgcagtggaaa	Protospacer
   .  .** **** **************** ..

88. spacer 15.14|2956315|34|LR134442|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 12, identity: 0.647

gttgaccgcggcggctaagaccgcgcagtggcgg	CRISPR spacer
cgaatatgccgcggataagaccgcgcagtggaaa	Protospacer
   .  .** **** **************** ..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134442

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection