CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134474	Kurthia zopfii strain NCTC404 genome assembly, chromosome: 1	4 crisprs	cas3,cas14j,WYL,csa3,DinG,DEDDh,cas5,cas8c,cas7	0	13	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134474_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134474_1

709310-709420

Orphan

Consensus_repeat	Method
AAGTCAGATGCTCTACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134474_1

>merge|LR134474|1|709310-709420|CRISPRCasFinder
AAGTCAGATGCTCTACCAACTGAGCTAATGACTCACTATGAATGGTGCCGGCGAAAGGAGTCGAACCCTCGACCTACTGATTACAAGTCAGTTGCTCTACCAACTGAGCTA

>LR134474|1|1|709310-709420|CRISPRCasFinder
AAGTCAGATGCTCTACCAACTGAGCTA	ATGACTCACTATGAATGGTGCCGGCGAAAGGAGTCGAACCCTCGACCTACTGATTAC
AAGTCAGTTGCTCTACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134474.1\|VEI05314.1\|718423_719251_-\|Branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|181067
LR134474.1\|VEI05317.1\|721357_722296_-\|Cysteine-synthase	unknown	unknown	gnl\|CDD\|273465
LR134474.1\|VEI05311.1\|716740_717256_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase	unknown	unknown	gnl\|CDD\|223872
LR134474.1\|VEI05301.1\|694041_694380_-\|Multiple-resistance-and-pH-homeostasis-protein-C	unknown	unknown	gnl\|CDD\|181497
LR134474.1\|VEI05305.1\|698254_699463_-\|Fosmidomycin-resistance-protein	unknown	unknown	gnl\|CDD\|341031
LR134474.1\|VEI05316.1\|719828_721223_-\|Para-aminobenzoate-synthase-component-1	unknown	unknown	gnl\|CDD\|223225
LR134474.1\|VEI05302.1\|694379_694808_-\|Multiple-resistance-and-pH-homeostasis-protein-B	unknown	unknown	gnl\|CDD\|183602
LR134474.1\|VEI05318.1\|722448_723756_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|225995
LR134474.1\|VEI05313.1\|717633_718422_-\|Dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
LR134474.1\|VEI05300.1\|692570_694049_-\|Multiple-resistance-and-pH-homeostasis-protein-D	unknown	unknown	gnl\|CDD\|181085
LR134474.1\|VEI05307.1\|700720_701284_+\|putative-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134474.1\|VEI05315.1\|719250_719832_-\|Anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
LR134474.1\|VEI05309.1\|702111_703017_+\|Predicted-permease,-DMT-superfamily	unknown	unknown	gnl\|CDD\|273359
LR134474.1\|VEI05319.1\|723977_724868_-\|Heat-shock-protein-33-homolog	unknown	unknown	gnl\|CDD\|234643
LR134474.1\|VEI05303.1\|694794_697194_-\|Multiple-resistance-and-pH-homeostasis-protein-A	unknown	unknown	gnl\|CDD\|237155
LR134474.1\|VEI05304.1\|697548_698214_+\|sensor-protein-KdpD	unknown	unknown	gnl\|CDD\|238945
LR134474.1\|VEI05310.1\|715095_716586_-\|Lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
LR134474.1\|VEI05306.1\|699585_700542_-\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|238572
LR134474.1\|VEI05312.1\|717252_717621_-\|Dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
LR134474.1\|VEI05308.1\|701328_702024_-\|Regulatory-protein-YeiL	unknown	unknown	gnl\|CDD\|223736

Protein	Function_ID	Function_description	E-value
LR134474.1\|VEI05314.1\|718423_719251_-\|Branched-chain-amino-acid-aminotransferase	gnl\|CDD\|181067	PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.	1.13936e-121
LR134474.1\|VEI05317.1\|721357_722296_-\|Cysteine-synthase	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	9.06141e-167
LR134474.1\|VEI05311.1\|716740_717256_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	2.02847e-75
LR134474.1\|VEI05301.1\|694041_694380_-\|Multiple-resistance-and-pH-homeostasis-protein-C	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	2.64648e-52
LR134474.1\|VEI05305.1\|698254_699463_-\|Fosmidomycin-resistance-protein	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.27194e-96
LR134474.1\|VEI05316.1\|719828_721223_-\|Para-aminobenzoate-synthase-component-1	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	1.52025e-164
LR134474.1\|VEI05302.1\|694379_694808_-\|Multiple-resistance-and-pH-homeostasis-protein-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	5.16944e-49
LR134474.1\|VEI05318.1\|722448_723756_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.01911e-90
LR134474.1\|VEI05313.1\|717633_718422_-\|Dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	1.88172e-124
LR134474.1\|VEI05300.1\|692570_694049_-\|Multiple-resistance-and-pH-homeostasis-protein-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
LR134474.1\|VEI05307.1\|700720_701284_+\|putative-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.28896e-14
LR134474.1\|VEI05315.1\|719250_719832_-\|Anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	9.9473e-129
LR134474.1\|VEI05309.1\|702111_703017_+\|Predicted-permease,-DMT-superfamily	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.85574e-09
LR134474.1\|VEI05319.1\|723977_724868_-\|Heat-shock-protein-33-homolog	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	1.65891e-153
LR134474.1\|VEI05303.1\|694794_697194_-\|Multiple-resistance-and-pH-homeostasis-protein-A	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
LR134474.1\|VEI05304.1\|697548_698214_+\|sensor-protein-KdpD	gnl\|CDD\|238945	cd01987, USP_OKCHK, USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.	6.07464e-41
LR134474.1\|VEI05310.1\|715095_716586_-\|Lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
LR134474.1\|VEI05306.1\|699585_700542_-\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	1.0481e-66
LR134474.1\|VEI05312.1\|717252_717621_-\|Dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	3.36578e-43
LR134474.1\|VEI05308.1\|701328_702024_-\|Regulatory-protein-YeiL	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	4.33414e-24

>LR134474.1|VEI05309.1|702111_703017_+|Predicted-permease,-DMT-superfamily
MNKNLIFPLLIVIASSSYGILSTIVKVAMAHGFTTAQAVQSQYAIGFLLALILFVFTQRSLPKITMKGFFIIVGAGLFTGITGIVYGKSVQYLPASLAVVMLFQFTWIGLFLDCLLHKRLPKRIELISLVFLVGGTILAAGVLDVDLSGLSWKGWAFGFAAAFSFAVFMQFNSKHVEGITTISRLTFMALVSLIIVSIFQAPEVMWNGELFTSELLYFGLALGFFGIILPILLFTVAVPKVGGGTASILSATELPVAIMASVIVLNESLSTLQIVGILVVLVGMTLPTVIEMKKEKQRLKV
>LR134474.1|VEI05308.1|701328_702024_-|Regulatory-protein-YeiL
MKIIEDPVILNQYIRLHRFEEVFNIEETPFKIMELAEGETLMNEGEELNELYYLVAGRVKVTSSVHTGKFLLLRFNHPLTILGDLELIRNVPVQSQVTAVIDSIIMTLPFEYIRKNEMDNPAFLKQMLKHISYKLQTSTIASRVNLLESVESRFASFLLSTVSSEPDNDFGQELQTMRIAEIADLLGTSHRHLNRVVKKLSEKEIIAREKNHLIILDEVRLEEVSQGIRFE
>LR134474.1|VEI05307.1|700720_701284_+|putative-acetyltransferase
MEVQLRQAKLADGPAVAPLIVDAIGDIANRITGEDSPDLIIQKLIELFERQDNRISYLKTFIAQCNDEVAGMMIVYGGDEAIQLDAQLERWLTAKNAPIQTIELEARPDEYYIDTVCVDANFRGKGIGTSLLKYAEVLCKEKGYHKLSLSVELEKGRARHLYEKRGFVYSEPWMIIGEEFDHMVKPI
>LR134474.1|VEI05306.1|699585_700542_-|5-dehydro-2-deoxygluconokinase
MLEPTREFILIYGDAFVDYIANDTTNTSFTKFLGGTTINVAAGISRIGAPSAIITVTGEDETSEFVRNELKNEGVNTNYAKIIPEKRVTSVEVHLTENHDRIFTNYQDEQPDIQVESSHLVDEAFEKASVFSFCSNTMFQETALETTKVAVKKAIEKDCLIAMDANIRPLRWESPQQCLDTISEFLPYVNVMKLADEELFFITESNSIEEGIAALAKYEITLLMITVGAEGTYVVFNGEMQHVPSIKIDCVDTTGAGDAFMSGILRSIHLDGLPKSMDEAYDYIYFSNQLGAMAATKAGAITAMPHLHEIESLIKHRL
>LR134474.1|VEI05305.1|698254_699463_-|Fosmidomycin-resistance-protein
MSSATVKSSVLGNPVYPIMLLIGVSHLLNDTLQAVVPAMFPVLKSETGISFTQLGWLSFALNMVASVFQPIVGLISDRKPKPYALPIGMCLSLIGIAGLAFMHNYWMLLVSVIFLGMGSAIFHPEGSRVSFMAAGSKRGLSQSVYQVGGNTGQALAPLISAFVLVPFGQIGAAWFLIVASVGIFTLSKISVWYKKQLEIEKEARRKNPILSSLSKLTKKKIAYALVILMLIIFARSFYVTSITNFFVFHLTDQYGLTIKNAQLFIFLFLAVGAVGTFFGGPIADKIGKKNVILLSVLVPLPFALYLPYTSLTLLPIFIIIIGFFIMLSFSVTVVYAQELVPNKIGTMSGFSVGFAFGMGAVGAVVIGSFLDQVGVMTTMTYISYLPILGIIGFLLPKDRKIA
>LR134474.1|VEI05304.1|697548_698214_+|sensor-protein-KdpD
MKSHGRMDESILVCVYYGPNSERLIRRGHKIANMLDCPLYVLNISRQSADEFDSSQQADLLHWQSLVEELGIDEFILKSNEDRPTQQVVAEVCNDLNITQVVIGQTAQNRWEEITKGSFINQLLKAIPYVDIHVVSVERQVMAKDDMYEKAIRAFLVDDAGVYRIYFDLPEKFLYEGLFFKELGTDFDNGRFKFMYEGKSYEIEVNDGYIHDDETIRQLNL
>LR134474.1|VEI05303.1|694794_697194_-|Multiple-resistance-and-pH-homeostasis-protein-A
MITKLMIIIPLIAAIIVPLLHKRFKTIHIGWFVLIIPTILFVMLLRFIPLISSGRTFTHTWDWIPSYNISFTTYLDGLSLLFALLITGIGSLVVLYSIFYLSKKESLHKFYCYLLLFMTAMLGVVFSDHLLVLYFFWEFTSVSSFLLIAFWHHRKASRRGAQKSMLITVSGGVAMLIGFLMVAEMTDSFSIREIISIMPTELDHRLFMPAMIFILLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIFAMSMNWFWIVSVVGLITLFWGSFNAGKQKDLKALLAFSTVSQLGLIMSLLGIGSIVYVLGYSAETAIYTQAGFAAIFHLMNHATFKGALFMTVGIIDHEVGSRDIRRLGGLMRVMPITFTIASIGSMSMAGLPFFNGFLSKEMFFEATLAIRHLDLHYAASLFVVVAWVASVLTFVYCAIFVAQTFFGTRDLLPKDRVIHEAPKGMLIAPSILAILVVLIFIFPNFFGKYILGSTMLSIYPNMGSIQEMTPTISAWHGFNTALIMTIGVIILGSILYVTRKKWSGIYGVLPEKMTFNYLYDLLVEEIQIVGKFVTDLYMTGSLRHYLIYIYLFIFLVVGGYFVKSNSFAIDFSQNAPVEWYEIILMIVMALAAVFIIFAKSRLTAVVLNGVIGLGVAIFFVLFRAPDLALTQLVVESVTTVLFLLCFSYLPEWKVEKSAKITKLINAVIAIGAGVLVVVISFTVLEYSEFKTISGFFENAYELVGGANIVNAILGDFRAFDTMLEVVVLLTAGLGVYILIKSKSKKERNNHENK
>LR134474.1|VEI05302.1|694379_694808_-|Multiple-resistance-and-pH-homeostasis-protein-B
MKINDVILRTVVQVVVFIILTIAIYLFFAGHYTPGGGFVAGLVLASAAVLLYLTYDAEKIKKGLPLDFKVVAAIGVTLALTTGVAPVFFGQPFLNMSSISVPFPLIGEKELATVMIFELGVALTVVGVVMTIILSISEGGED
>LR134474.1|VEI05301.1|694041_694380_-|Multiple-resistance-and-pH-homeostasis-protein-C
METLMVLLIGIFVSVATYLLLSKNIIRIIIGTALLSHAVHLLILTIGEVKKGDVPLLKEKPGPYTDALPQALILTAIVISFAVTAFVLVLAYRAYAKNGTDDVEEMRGDELE
>LR134474.1|VEI05300.1|692570_694049_-|Multiple-resistance-and-pH-homeostasis-protein-D
MNNLVVMPMFIPLFAAVILVFLRSKVRLQKIILFLSMCALIVVNIVLLVTIKKEGIQTLAFGGWEAPFGISFVADSFAMLFVTTASVVSLLCILFAFRSFEESFEKMFVYPLILLMIAGVNGSFLTGDIFNLFVCFEVMLLASYVLITIGGGKERLRESLKYVLINVLASWVFLVGLAMVYGSLGTLNFAHMAERVDLVHQGPVLTTISLMLLVVFSLKAGLFLFYWLPGSYRVPTVPIAAMFGALLTKVGIYAIIRTFTLIFPIQEDVTHTLIGLLALATIILGMFGAIGYRDLRQIVGYNVIIGVGFVLMALYANNATAFEGSIYYLIHDMIIKALLFLMIGTMMYITGRTSFDEIKGLIHQFPLFGWLFFMMVLALTGIPPFSGFLGKVLIGQGLIESGYLVGAVIAMLSSIVVLYSLIRVFLKSIFGEATLNENYKKKIPKQMMFAMTALGALSICLGLGAELLAPYVKDAVNVLVNPTVYIDAVLYK
>LR134474.1|VEI05310.1|715095_716586_-|Lysine--tRNA-ligase
MSEELNDQMIVRREKMDSIREAGLDPFGQRFERTHLTNELHEKFEAITKEELEELEAPIEVVIAGRIMTKRSKGKVGFANIQDLGGQIQIYVRKDAIGEEAYELFKRADLGDIVGIKGSIFKTHVGELTIKALEFTFLTKSLRPMPEKFHGLQDVEQRYRQRYLDLMTNEESKKAFITRSQIIRSIRNFLDNKGYLEVETPMLNAIAGGAAARPFVTHHNALDAQMYMRIAIELYLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTLLELYEAYADYEDIMNLTEDLFVHVAQEVIGETKIQYGEDVIDLTKGWKRLHMVDAVKEATGVDFWKQMTKEEAQTAAKEHGIEIRETMEVGHILNEFFEQKVEESLVQPTFIFGHPVEISPLAKKNPEDPRFTDRFELFIVRREHANAFTELNDPIDQRERFESQMVEKEQGNDEAHEMDEDFLEALEFGMAPTGGLGIGIDRMIMLLTNSQSIRDVLLFPLMRQRD
>LR134474.1|VEI05311.1|716740_717256_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase
MSVAYISLGSNMGDKVDSLKQAVALLNAHEEIKVTAVSSVYDTDPVGYEDQDLFMNIAVAVETTLSPVQLLEVCQSIEEELKRVRIIRWGPRTMDLDIVLFDDQVMDTERLIIPHPRMHERGFVLVPLAEITMDLVHPVLNKSIEALLPTVDHQGVRKHLEVKSVDAFINC
>LR134474.1|VEI05312.1|717252_717621_-|Dihydroneopterin-aldolase
MDYIHLRDLEFYGYHGVLPTETELGQRFRVTMKIAVDLQHAGETDSLDNTVSYADVFMIVQKILEGKPFKLIEAVAEKIATDVRAAYPNEIKGLQVEVIKPDPPIPGHYREVAVEITRGEMQ
>LR134474.1|VEI05313.1|717633_718422_-|Dihydropteroate-synthase
MELEFGKKTYIMGILNVTPDSFSDGGEFNSVEKAVIHAKEMVADGAHIIDVGGESTRPGYTPVSIEEEIARVVPVIQAITSELDVLVSIDSFKSEVAEAAVQAGAHIINDVWGAKHDPRIAEVAARHNVPIILMHNRKNEDYGTDFWATAKADLEESIQIALEAGVKREKIWLDPGIGFAKSFEQNIEMMKNLSNLSDMGYPVLLATSRKRMIGTILDLPVDERMEGTGATCCYGVSNGCHIMRVHDVKPIARMMKTMDSLK
>LR134474.1|VEI05314.1|718423_719251_-|Branched-chain-amino-acid-aminotransferase
MWCWKDGEFVQAEDLRISPLDHGFLYGLGFFETFRTYNDEPFLFEEHMERMKTALNEYKIKMPYSNDELMEVIRTLNAKSGNQDGYFRLNVSAGNEGLGLQARTYDHPTVIIFRKELLAGILEKEAIWLETRRNTPEQAIRYKSHHYANNILARQEVASLKDVEGFFLTEEGFIAEGITSNIFWVKDGELYTPSIETGILNGITRQYVMKLADQLNLQVNEGVFLKKSLQHAEECFVTTSIQEIVPIHSIGELRFAGGEGSVYQSLHALYKEMRE
>LR134474.1|VEI05315.1|719250_719832_-|Anthranilate-synthase-component-II
MILMIDNYDSFTYNIVQYFGELQEDIQVIRNDQITLAEIDALTPKMIVISPGPCSPNEAGMSLEIIEHFAGEIPILGVCLGHQSIAQVFGGKVVRAERLMHGKVSPVFHNDADMNKGMPNPYNATRYHSLIVEKSSLPDCLEVTSWTAEGEIMGLRHKDLAVEGVQFHPESIMTESGLTLLRNFIDQYCGGTK
>LR134474.1|VEI05316.1|719828_721223_-|Para-aminobenzoate-synthase-component-1
MNNQLFQSESIHFNADSFFYSFKEQTSKVDHAIYLESGRSGKQHIAAWNPLAVIQSTDEGIQIQWRNGDVEIRKGESLELIEQLTNTYAFQTEEELFTGGVIGSISYDYARKIESLSNTAADDLHFPDQFMYLVDAWAVFDVEKSELTVMKTSTSDVNLADWFKQWESAEAKRIFSKDAKVLNHQIENMNVSMNGAQFEAAVRQIQEYIKQGDVFQVNLSVRQSKDFTVEPIILFEALRTFNPSPYSALIKSPAFSIVSGSPELLIKKDDEDLSTRPIAGTRPRGNNDAEDLELANELINNEKERAEHVMLVDLERNDLGKVSAYGTVHVDEFMVIEKYSHVQHIVSNVRSKIAANQSNTEVIRAMFPGGTITGAPKIRTMEIIEELEPVRRGIYTGSIGWIGYNGDLDMNIVIRTAFIQDEKVYIQAGAGIVIDSIPEKEYIESLNKAKAMWQAVQMVEEVQQ
>LR134474.1|VEI05317.1|721357_722296_-|Cysteine-synthase
MTNQIVNSVSDLVGNTPIVKLNNVTGPNDADVYVKLEYMNPGSSVKDRLALGMVEQAEKDGILKAGSTLIEPTSGNTGIGLAMIAAAKGYKSVIVMPDTMSMERRNLLRAYGAELILTPGAEGMKGAIAKAEELSKENGWFLPQQFENPVNAVVHRLTTGPEIVDAFEKAGLTLDAFLAGVGTGGTITGAGEVLKEKFPNIEIIAVEPKDSPVLEGGKPGPHKIQGIGAGFVPSVLNTEIYGSVFPVENDAAFDTARKVAKEEGILGGISSGAAIFAAIETAKRLGKGKNVLAVLASNGERYLSTPLYHFDD
>LR134474.1|VEI05318.1|722448_723756_-|Transposase-and-inactivated-derivatives
MIYVKNGEKKHSFTNSFILKMLNNKRKKGELCYMKSIMNMPGLKDVLITKIEEIEGKYALYIELPKVPHTCPSCRSITSKVHDYRIQRISHLKWFERLTVLYYKRRRYSCSCGKRFSEKSSFIDRYQRFSKEWNQAIQILGVKSPTFKSVAEKMGTSISTVIRRFDKVAEKQLTSGVTLPKIIAIDEYKGDTNAGKFQLVIANAETHEPIDILPNRRKDTIKQYLQEYGDQVEIVVMDMNQSFKAAVKDALNRPVIIADRFHYCRYIYWALDKVRRSVQGEWHVYDRKRLKRMRYVFYKREAQLNEKQLWELNRYRSLSPLLKSAHELKEAYCEWFDWAKTSTDMIEIKERLSLFYRKVIEHDIPAFNQVMKTMKNWQTEILNSFAFGYSNGFLEGINNKTKVMKRNAYGYKRFDRFRAKILLAIKYKKVGLHLG
>LR134474.1|VEI05319.1|723977_724868_-|Heat-shock-protein-33-homolog
MSDYLVRAIGFNSSVRAFAVSTTETVGEAQRRHDTWPTTSAALGRTMTAGVMMGAMQKGEDRLTIKIQGDGEIGGIVVDANAKGEVRGYAVNPHVHYDLNEHGKLDVRRAVGTEGSLSVVKDAGLRDYFTGQVPLVSGEIAEDFTYYFAKSEQVPSAVGLGVLVDTDNSILASGGFVIQVMPNVEDEIITAIEEQLSKIEPVSKMIEKGYTPEQILESVLGKENVSVLDSMPVSFACNCSKERFSSALLSLGTNEIQTIIDEEGHAETQCHFCMEVYDFPKAELEGIIEEIKEQQA

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Crispr_ID: LR134474_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134474_2

1916547-1917506

TypeI

Consensus_repeat	Method
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	PILER-CR
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	CRISPRCasFinder
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	CRT

14 spacers

DEDDh,cas3,cas5,cas8c,cas7

The CRISPR arrays of LR134474_2

>merge|LR134474|2|1916547-1917506|PILER-CR,CRISPRCasFinder,CRT
GTCTCACTCTATATGAGTGAGTGGATTGAAATATCTTTCGCGTATTCAACAGCGAATTTAACACCAGTCTCACTCTATATGAGTGAGTGGATTGAAATTGCTGAATCATTGCTAATCCCGCATAATGGATAGTCTCACTCTATATGAGTGAGTGGATTGAAATAGAGAAAACGACTTATCATTTGTTGCAACTCGACACCGTCTCACTCTATATGAGTGAGTGGATTGAAATAGCTAGTTCTTCTGGTGTTTCTACGATTTCGAAGTCTCACTCTATATGAGTGAGTGGATTGAAATACACAACGGATAACACTAACAAGGGTGCAGATGCGTCTCACTCTATATGAGTGAGTGGATTGAAATAGCGAGTGATTTAAGTAGAACTACTTTAGGGAAAGTCTCACTCTATATGAGTGAGTGGATTGAAATAGAAGGACTTTATGAATTCCCAACAGTAAAAGATGGTCTCACTCTATATGAGTGAGTGGATTGAAATACACAACGGATAACACTAACAAGGGTGCAGATGCGTCTCACTCTATATGAGTGAGTGGATTGAAATAGCGAGTGATTTAAGTAGAACTACTTTAGGGAAAGTCTCACTCTATATGAGTGAGTGGATTGAAATAGAAGGACTTTATGAATTCCCAACAGTAAAAGATGGTCTCACTCTATATGAGTGAGTGGATTGAAATATACCTACGGATTTTGTTGGATCAGCAGATTTTGGTCTCACTCTATATGAGTGAGTGGATTGAAATTATGACTACTAAAAACAAACCAATTGAGAATTTTGTCTCACTCTATATGAGTGAGTGGATTGAAATATTTAACATAGGTTGATTACTTTCAAGATATTCTGTCTCACTCTATATGAGTGAGTGGATTGAAATGGTGGACATAAGGTTTATATCGAGGATAAATTATGTCTCACTCTATATGAGTGAGTGGATTGAAAAA

>LR134474|2|1|1916547-1917505|PILER-CR
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	ATCTTTCGCGTATTCAACAGCGAATTTAACACCA
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	TGCTGAATCATTGCTAATCCCGCATAATGGATA
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	AGAGAAAACGACTTATCATTTGTTGCAACTCGACACC
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	AGCTAGTTCTTCTGGTGTTTCTACGATTTCGAA
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	ACACAACGGATAACACTAACAAGGGTGCAGATGC
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	AGCGAGTGATTTAAGTAGAACTACTTTAGGGAAA
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	AGAAGGACTTTATGAATTCCCAACAGTAAAAGATG
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	ACACAACGGATAACACTAACAAGGGTGCAGATGC
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	AGCGAGTGATTTAAGTAGAACTACTTTAGGGAAA
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	AGAAGGACTTTATGAATTCCCAACAGTAAAAGATG
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	ATACCTACGGATTTTGTTGGATCAGCAGATTTTG
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	TATGACTACTAAAAACAAACCAATTGAGAATTTT
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	ATTTAACATAGGTTGATTACTTTCAAGATATTCT
GTCTCACTCTATATGAGTGAGTGGATTGAAAT	GGTGGACATAAGGTTTATATCGAGGATAAATTAT
GTCTCACTCTATATGAGTGAGTGGATTGAAAA

>LR134474|2|2|1916547-1917506|CRISPRCasFinder
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	TCTTTCGCGTATTCAACAGCGAATTTAACACCA
GTCTCACTCTATATGAGTGAGTGGATTGAAATT	GCTGAATCATTGCTAATCCCGCATAATGGATA
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GAGAAAACGACTTATCATTTGTTGCAACTCGACACC
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GCTAGTTCTTCTGGTGTTTCTACGATTTCGAA
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	CACAACGGATAACACTAACAAGGGTGCAGATGC
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GCGAGTGATTTAAGTAGAACTACTTTAGGGAAA
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GAAGGACTTTATGAATTCCCAACAGTAAAAGATG
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	CACAACGGATAACACTAACAAGGGTGCAGATGC
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GCGAGTGATTTAAGTAGAACTACTTTAGGGAAA
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GAAGGACTTTATGAATTCCCAACAGTAAAAGATG
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	TACCTACGGATTTTGTTGGATCAGCAGATTTTG
GTCTCACTCTATATGAGTGAGTGGATTGAAATT	ATGACTACTAAAAACAAACCAATTGAGAATTTT
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	TTTAACATAGGTTGATTACTTTCAAGATATTCT
GTCTCACTCTATATGAGTGAGTGGATTGAAATG	GTGGACATAAGGTTTATATCGAGGATAAATTAT
GTCTCACTCTATATGAGTGAGTGGATTGAAAAA

>LR134474|2|1|1916547-1917506|CRT
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	TCTTTCGCGTATTCAACAGCGAATTTAACACCA
GTCTCACTCTATATGAGTGAGTGGATTGAAATT	GCTGAATCATTGCTAATCCCGCATAATGGATA
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GAGAAAACGACTTATCATTTGTTGCAACTCGACACC
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GCTAGTTCTTCTGGTGTTTCTACGATTTCGAA
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	CACAACGGATAACACTAACAAGGGTGCAGATGC
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GCGAGTGATTTAAGTAGAACTACTTTAGGGAAA
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GAAGGACTTTATGAATTCCCAACAGTAAAAGATG
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	CACAACGGATAACACTAACAAGGGTGCAGATGC
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GCGAGTGATTTAAGTAGAACTACTTTAGGGAAA
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	GAAGGACTTTATGAATTCCCAACAGTAAAAGATG
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	TACCTACGGATTTTGTTGGATCAGCAGATTTTG
GTCTCACTCTATATGAGTGAGTGGATTGAAATT	ATGACTACTAAAAACAAACCAATTGAGAATTTT
GTCTCACTCTATATGAGTGAGTGGATTGAAATA	TTTAACATAGGTTGATTACTTTCAAGATATTCT
GTCTCACTCTATATGAGTGAGTGGATTGAAATG	GTGGACATAAGGTTTATATCGAGGATAAATTAT
GTCTCACTCTATATGAGTGAGTGGATTGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134474.1\|VEI06675.1\|1906642_1907659_-\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|224805
LR134474.1\|VEI06710.1\|1924350_1925256_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
LR134474.1\|VEI06685.1\|1911841_1912399_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134474.1\|VEI06688.1\|1913346_1913853_+\|Ferritin	unknown	unknown	gnl\|CDD\|153113
LR134474.1\|VEI06694.1\|1917655_1918267_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|376980
LR134474.1\|VEI06681.1\|1910418_1910628_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134474.1\|VEI06712.1\|1926455_1927301_-\|Integrase-core-domain	unknown	unknown	gnl\|CDD\|222853
LR134474.1\|VEI06702.1\|1919613_1919808_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134474.1\|VEI06708.1\|1922728_1924351_+\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
LR134474.1\|VEI06677.1\|1907683_1907845_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134474.1\|VEI06692.1\|1915504_1915870_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|379669
LR134474.1\|VEI06686.1\|1912417_1913224_-\|DNA-ligase	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235735
LR134474.1\|VEI06683.1\|1910644_1911715_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|225995
LR134474.1\|VEI06698.1\|1918816_1919209_-\|Transposase-C-of-IS166-homeodomain	unknown	unknown	gnl\|CDD\|379018
LR134474.1\|VEI06700.1\|1919338_1919617_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|377551
LR134474.1\|VEI06706.1\|1922081_1922747_+\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
LR134474.1\|VEI06690.1\|1914585_1915554_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|376574
LR134474.1\|VEI06704.1\|1919975_1922069_+\|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134474.1\|VEI06679.1\|1907945_1910270_+\|type-I-restriction-enzyme-EcoKI-subunit-R	unknown	unknown	gnl\|CDD\|223989
LR134474.1\|VEI06696.1\|1918426_1918774_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|376980

Protein	Function_ID	Function_description	E-value
LR134474.1\|VEI06675.1\|1906642_1907659_-\|2-dehydropantoate-2-reductase	gnl\|CDD\|224805	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].	1.75151e-21
LR134474.1\|VEI06710.1\|1924350_1925256_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.3459e-126
LR134474.1\|VEI06683.1\|1910644_1911715_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.19375e-57
LR134474.1\|VEI06688.1\|1913346_1913853_+\|Ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	8.05098e-76
LR134474.1\|VEI06694.1\|1917655_1918267_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	4.8433e-48
LR134474.1\|VEI06700.1\|1919338_1919617_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	8.81858e-35
LR134474.1\|VEI06712.1\|1926455_1927301_-\|Integrase-core-domain	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.82026e-46
LR134474.1\|VEI06708.1\|1922728_1924351_+\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	3.57642e-79
LR134474.1\|VEI06692.1\|1915504_1915870_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|379669	pfam14690, zf-ISL3, zinc-finger of transposase IS204/IS1001/IS1096/IS1165.	0.000104767
LR134474.1\|VEI06686.1\|1912417_1913224_-\|DNA-ligase	gnl\|CDD\|235735	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated.	2.55388e-19
LR134474.1\|VEI06698.1\|1918816_1919209_-\|Transposase-C-of-IS166-homeodomain	gnl\|CDD\|379018	pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This is a leucine-zipper-like or homeodomain-like region of transposase TnpC of insertion element IS66.	0.00524474
LR134474.1\|VEI06706.1\|1922081_1922747_+\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.55456e-65
LR134474.1\|VEI06690.1\|1914585_1915554_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	8.49968e-52
LR134474.1\|VEI06704.1\|1919975_1922069_+\|helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	8.43258e-47
LR134474.1\|VEI06679.1\|1907945_1910270_+\|type-I-restriction-enzyme-EcoKI-subunit-R	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	3.09664e-45
LR134474.1\|VEI06696.1\|1918426_1918774_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	9.18126e-24

>LR134474.1|VEI06692.1|1915504_1915870_-|Transposase-and-inactivated-derivatives
MSINHDIRNLLDIQDSNIHFATNCVNQKLYKGRMSKFISAKLTYTPRNCKVCGMANKDFSIIKNGTQESRISLPMVGVHRTFLLLKKQRFFCKSCSSTFVAESKVVDRLCCISNQSKSLGF
>LR134474.1|VEI06690.1|1914585_1915554_-|Transposase-and-inactivated-derivatives
MIAYVASRISPNHSASEAQSITLIAKDTCVSTTSVQRFINQYSQSMPKKYYYLAKHLSFDEFKYLKGRMAFEYINAKTGAILGILPTRLSRDIHDHFMTRYSYAQRCAVETITIDMNAGYEKIIRDLFPKAKIIIDRFHLVQLINRSINKLRISVMNTFRTSNGEDRKKYRRLKKYWKLPLKSALDLSCTSYKNFPLFGQTTDATVVETLMSYSERLKVNYDLYQSILTALKEKNLEQLTEILEKPLAEGVSKKFKRSIKTLKYHLSSIENSFLFPYNNGRIEGINNKIKVLNRVAYGYRNFENYRNRIYLHFNLKRASHAS
>LR134474.1|VEI06688.1|1913346_1913853_+|Ferritin
MISEKLHVALNDQLNFEFYSAHAYLAMAAYCTDQDYDGFANFFLVQAEEERFHAMKFYNFLSDMGQRVTIAEFPSVKNDFTNILEVFETALKHEKEVTRRIYNLSDIALDEREHATMAFLKWFIDEQIEEESTFDTLISKISRIQNDANAIFMLDSELASRKFVAPAE
>LR134474.1|VEI06686.1|1912417_1913224_-|DNA-ligase
MNFISMVIKTANQWPDSICGIELIKIEENKETDSFSTFIHTSQSFDPFYTSVHGIEANDVANSPTFEQMIPVLEQWLQNETVLSFHHEFEAQCLNESFEQLGKLKPIFTHYSVLPYFKNKIDESYFSYTLHDLTNHFIQEDVYNDAEKIAKLVVHFLQNETHWTAKLVENTVITQKEIQSIFQKTVVFTGGLSGMRRAEAAKLVMQAGGAFSNTMSKKVDLLVVSNSSFEKFNNNGAQSSKWVKAASLQNAGHEITILTEDEFLPLIK
>LR134474.1|VEI06685.1|1911841_1912399_-|Uncharacterised-protein
MYLVELLQGNRRHTVGLFAEKEEAIEWVESVPYVHKQVDVFDEHEFVNYSMNFDELPLYEEIVWKKSRFPLTKYMFTPDDGEITVLIWDRLVPMDEVDGLTDDATQVDAYVIPNAEAARYIQSREEIREAIFKHYGKRAETGGVGSEDGEYITVENGPFIHLDALTVQQWDEKTSIKQFIELISQ
>LR134474.1|VEI06683.1|1910644_1911715_+|Transposase-and-inactivated-derivatives
MGVHRTFLLLKKQRFFCKSCSSTFVAESEVINRFCFISNQSKSLVTLKASEAQSITLIAQDTSVSPTSVQRFINQFSESMPKKFNDLPKHLSFDEFKYLKGRMAFEYINAKTGTILGILPSRLSRDIKDHFLSRYSYAQRCAVETITIDMNAGYEKLIKELFPKAKIIIDRFHLVQLINRSMNKLRISVMNDFRTSNGADQKKYRRLKKHWKLPLKNALDLSFTSYKNFPLFGQTTDAKVVETLMSYSERLKVNYNLYQSILTALKDKNLEQLTEILEKPLAEGISKDFKRSIKTLKYHLSSIKNSFLFPYNNGRIEGINNKIKVLNRVAYGYRNFENYRNRIYLHFALKRASHAS
>LR134474.1|VEI06681.1|1910418_1910628_+|Uncharacterised-protein
MSINHDIRNLLDIQDSNIHFATNCVNQRLYKGRMSKFITAKLTYTPECCKVCKKGKQGFLNHQKRHTGV
>LR134474.1|VEI06679.1|1907945_1910270_+|type-I-restriction-enzyme-EcoKI-subunit-R
MIEVLSEIESKAKLNKNSRTSLKCRSFIKKLGYRSRSKKMIHEIDQAIQRTNLTMLLPDQVESWLEIDLDDAIHFQYNAKSRVLAPTTSKAPALYAFQAEAVNRIHRKMIGNDSFKGMLVLPTGGGKTTTAVRWIWEAALSKGKKVLWIAHRHELLNQALETMRNQVEKPVKYRVVSGIHDHATMIQDEQLIIASKDSLTHHGERLANWLAEDDELFLVIDEAHHATSRTYIQLIRSLEKSLDRLYLLGLTATPFRTAESESGALRKLFKDGILYKKDLKNLVASGILSEPHFFSMQTDVQIAQKLTAEQLETLRFTDQLPEKIMDKLVEHHPRNLLIVQQYIASANQFGKTILFAINQLHATMLALLFQQHQVDARVVISQNDVDHNADTIQAFRNNEFPILINVNILTEGADFPDVQSVFLTRPTISSIFMTQMVGRALRGEVAGGTKVANIVSFIDDWVEKIAWSNPQSLLAGENGDETFEGISDRKVTEIISAQVMEQLALRMNNHLDFADMKRNYFAESVPMGVYAMHYLHDEKTISEDVLVYENDVDAYALMLEQLPRFCIQNGLSSKLTNGQIRQFAEQLELQFFIEDELQPMYEIIDLMAILKYFLVTKELPALLLFKERKQVNITELARTIVQKDYTYRQQKEFIQQNWDEQPFLQVFFNYEEIYYKKCVQSELLMIDTIFSPKEPYESDVSLAKLKKSNHSEWRSLMYQVFERNKQKNGMYQCVLSGERSMNKADFKVGYKKSLKNGGKTIVNNLALVKKRVLQ
>LR134474.1|VEI06677.1|1907683_1907845_-|Uncharacterised-protein
MKKQKHKIDPSEETTISYDTVLDEVIDPKNEDENAEAEYEGVDPETIDDQPPY
>LR134474.1|VEI06675.1|1906642_1907659_-|2-dehydropantoate-2-reductase
MKIAVIGATSHGMTLAAYLKTIYDDVTLVDLEIAPLEAIQLHGINVVGATTFQVNNIAVKTAEQLESDYDLIFIFSPSRSNSLLFPMIESKIKATCMIVSFQENLSDWRTIRTFTKQPVFSAVCHFQATLKNTHTVSITTDLEYFSRHAFDLCDYKQMHPFNAAEIKNILDAVGHTMLTSLPTNIKWSKTLFSSAIDRLSSALNCSYGDILHHSTALLTAIHIADEIVRTAKKRNIILSTTGGANFNDLIINSDTKLEELVPVFQMLILPHQYTCTNILKSELFEYDIIDDLVTEALKVDQPTPYLDLLSYCLHFLRDRPFHENIQLFEPLILGNTLK
>LR134474.1|VEI06694.1|1917655_1918267_-|Transposase-and-inactivated-derivatives
MICDGYSAYGRLPNVQFANCWAHVRRYWLKADSKNGRIGVEYCDRLFHIELRIKHLSPEERVQIRQQEAKPIVDEFFAWIDRSPFYGKNAIAKATEYTLSRAEELKVFLENGNVAIDNNPAENAIRPNVIGRKNWLFSVSEAGAKANAICLSLAETAKANGIDFYQYLVKLMTDLPNLPFHQQPEILHNYLPWSENIQATCAK
>LR134474.1|VEI06696.1|1918426_1918774_-|Transposase-and-inactivated-derivatives
MKRVQHFEHVYECISCKNDATQKAQIKRGKAPQGAIQRSIAGPTVLAKLIYDKFIQYLPLYRQVNEWERHGLHTNDKNLSNWVIRVAEDWLQPLYDLMKQLLTAKSVLHIDDTYA
>LR134474.1|VEI06698.1|1918816_1919209_-|Transposase-C-of-IS166-homeodomain
MNTLDNNSVTETVIQLLEKQLAYSNQQNQELSAKLDQALAQIHHLTKALYGSKSEKSKYQAPDGQGSLFNDDSSFNEPEQTDEQSMETVSYTVTRKKTNKKRNDSFRDDIEIEELHHHPTNLACDCCHNE
>LR134474.1|VEI06700.1|1919338_1919617_-|Transposase-and-inactivated-derivatives
MKHDFTSVQNIYIICGKTYMRKGIDGLATLIQDSFELDPYSDSIFLFSEWSKDRYKCLYFDGDGFAMLYKRLDNGKLQWPKDENEVRNLTQQ
>LR134474.1|VEI06702.1|1919613_1919808_-|Uncharacterised-protein
MPTNKLTIVPVKLDPLSVETVTFHSSQYTAEPSCVIKTAAAEIAFFNGVDERIIQTIMKELNSR
>LR134474.1|VEI06704.1|1919975_1922069_+|helicase-Cas3
MGNDGMIAHVNHDKNGEVHTWEAHSKAVGILASQFMQSYDPFRVAEISGILHDVGKLSNEFQKYIVQENGKRGSVKHALPGAALIFRNSLTIEGRLKNISFLIQIIIAGHHRGLYDLDQEFNNRLKTTCELQEENEGINHLITIELRKIEQGKKHINEYSDQALSLLTRLAFSALIDADWLDTEAFFNEERKEQRNFIYPSMEKLLIKFDCYMLENKNDYIKHKENPKLDEFRALARSMGEEMGSLFELVSPTGTSKTFSSLSFALLHAIKQGKSNIIVALPLINLTSEIAEIYKKIFGEANVVEDHSAFDFTTESISKIAIENWNRPFVITTTVQLFESLFSNKPAKLRKIHRLANSVLIIDEYHLLPLHELIPILKALDLLQSYFGLTVLLVSATPFPLMESKEINRLNLKNKPTQIIKEQVIPTKKYELKLEKNIKMEEMSLKNSGNSTLMIVNTRKRAQQLFILAREVVNENEIYHLSTALTVGDRKKYLDEIKTKILNGEKILVIATQVMEAGVDISFKQVYRELAPLPSIIQAAGRCNRYSEYEIGVVTLFSFDDEYYPNALYRNGVKQLDYLIQKYGLQNIMTKKVVEVYYKRLLSQELIKTTIKDEDCFMFEKIAKEFKMLNSYNTKVICVNGTGFEKKWLHEKVNNNWWRKVNHYTAELPKKLEYLCEKHNDVLLWTGEYDQKLGIRV
>LR134474.1|VEI06706.1|1922081_1922747_+|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG
MLRRSKVSVKVFGNGALFVRPESKVERVSYPIITPSAARGILEAIFWKPEFKYQITKIKALEWPEFTSIVRNETSSKAVINKAFMNNPINKYIEDTRQLRHSLFLKKIAYIIEAEIILLEETAHPIKKYEVMFNRRVTKGQCFARPYFGTREFSCHFSCVEGNEEIIDWTEEVGPMFFDYFYSKNKEITQPHYFNANIVKGEMTIPQYLYKEVYKECILND
>LR134474.1|VEI06708.1|1922728_1924351_+|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG
MYIKRLIEFAEANPKLFPAEGFQLKKIDWIVDIEMGSMNVTFNEAEEQKRIVPSVNRTREVRPALIVDRADYVFGKASKEKDQARSKIRQNTYLLLLEDYLSKTNDEDIKVLIEILHEEIPLPLSMKESDIISFRIRDEDYLHENEKVKHYILEELKNKNESTVDHQTKCMFCGQIEQILDVHTISFKVNRENTKLISANENAYESQGISKSKVAPTCHSCEQKYGKALEYFLQKKSIGNERNHVLRVGELNYVYWLHGDKMEGNVATTFQLLDKNNLQSLKTFIKQIFSGIKRDVEFEGLSILVLSANKGRLVVRDYFENKAITIINRIESFLNAQDIGEERLYNVFSLASATYQNTSQMKVSDLQDWFNWVFKGQPLPKRILVQLLKRIQSEGRMHKLYFAVLKSWLCSQKNGRDWTVKFDEENRNPAYIVGNIFALLEKVHQSARGSSTDSLSNKYFGSMSTTPKTVFAVLMKNYQHHLAKIADVNKGGAIYYDKKMITLLSSLQQMPTLFTLDEQAEFTLGYYHEKERLWTKKEEV
>LR134474.1|VEI06710.1|1924350_1925256_+|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair
MVGLLNDENKRYDFLLVFDVKDGNPNGDPDAGNLPRVDSETNEGLVTDVALKRKIRNYVHLTKSGENRFDIYVKNRGILSQEQAKAYEALGLENVEKPAATVVKDAREWMCNQYYDTRMFGAVMSGKKYNAGQVKGPIQLTFARSVDPIMPLDMTITRVALTNANDGQKEETEDGGVEAKHGTFGRKAYVPYGLYVAYGYYTPSFAKQTGVQSEDLEVFWKALINMWDLDRSAARGQMATRALYVFEHDSEYGNAPAHVLFDKISITKKPEVLVTRKFSDYDINIKSFDIDGIKMHNLVDY
>LR134474.1|VEI06712.1|1926455_1927301_-|Integrase-core-domain
MIRNNAHKYSVSAMCAVLEIKRSTYYYQINLDATSQQKTEDMALSKEIARIFKESRNNYGTRKIKRELLKLDKPKRASRRLISRIMGALGLVSNYTVAQFKPNKSCSNEALVKNELQREFIQEKELAVVVSDLTYVRVSGKWHYVCLLVDLFNREIIGHSVGESKTASLVYKALASISANLNNIQMFHTDRGKEFDNKLIDDALETFNIQRSLSMKGCPYDNAVAEATFKVFKTEFANQANFSTVDQLEIELNDYVHWFNNIRIHGTLGYLTPMEFKLQPI

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Crispr_ID: LR134474_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134474_3

1925459-1926419

TypeI

I-C

Consensus_repeat	Method
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	PILER-CR
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CRISPRCasFinder
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CRT

14 spacers

cas7,cas8c,cas5,cas3

The CRISPR arrays of LR134474_3

>merge|LR134474|3|1925459-1926419|PILER-CR,CRISPRCasFinder,CRT
GTCTCACTCTACATGAGTGAGTGGATTGAAATCTTTGGTGGTGTACCGCCTTGTGGTGGGGTGCCACCGTCTCACTCTACATGAGTGAGTGGATTGAAATTTGAAAATTGTAACGCGAATGAAGTCCGCTTCTTGTCTCACTCTACATGAGTGAGTGGATTGAAATTAACGAACCATCTTCCCAGCTACCGCTACCTGTTGGTCTCACTCTACATGAGTGAGTGGATTGAAATTCTACCGCCTCCATAAAGATGTCCGGCAAGCTGACGTCTCACTCTACATGAGTGAGTGGATTGAAATCATAAAAATGCTGAAATAACACCTAAGAGCGCCGTCTCACTCTACATGAGTGAGTGGATTGAAATGGCAATAGCTCGCCAATATACTCACTTAGTGCCTCGTCTCACTCTACATGAGTGAGTGGATTGAAATCTTGCATACGCGGTCTGCCTCAATCATCGTCACTTGTCTCACTCTACATGAGTGAGTGGATTGAAATTAAAGACATGTCCTCACATTGCTTAGTAACTCAGGTCTCACTCTACATGAGTGAGTGGATTGAAATAATATCCCCGAATCATTGCTGAATAGTTCGATTGCGTCTCACTCTACATGAGTGAGTGGATTGAAATAATGCGACTATATTGTATTAGATACTCAAAACGTGTCTCACTCTACATGAGTGAGTGGATTGAAATACGAATAGATTGCAATACTAATATGAAGTCAAAGTCTCACTCTACATGAGTGAGTGGATTGAAATATAGGCGCGTTCTGTTTCTTCGTAAGATGTACTGGTCTCACTCTACATGAGTGAGTGGATTGAAATCCAGTTATCGTTTAGCGCCTTTTGAATATTAAACGTCTCACTCTACATGAGTGAGTGGATTGAAATTTTATTACCTGAACCGCTTGTCTACAAATTAGCTGTCTCACTCTACATGAGTGAGTGGATTGAAAT

>LR134474|3|2|1925459-1926419|PILER-CR
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CTTTGGTGGTGTACCGCCTTGTGGTGGGGTGCCACC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TTGAAAATTGTAACGCGAATGAAGTCCGCTTCTT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TAACGAACCATCTTCCCAGCTACCGCTACCTGTTG
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TCTACCGCCTCCATAAAGATGTCCGGCAAGCTGAC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CATAAAAATGCTGAAATAACACCTAAGAGCGCC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	GGCAATAGCTCGCCAATATACTCACTTAGTGCCTC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CTTGCATACGCGGTCTGCCTCAATCATCGTCACTT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TAAAGACATGTCCTCACATTGCTTAGTAACTCAG
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	AATATCCCCGAATCATTGCTGAATAGTTCGATTGC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	AATGCGACTATATTGTATTAGATACTCAAAACGT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	ACGAATAGATTGCAATACTAATATGAAGTCAAA
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	ATAGGCGCGTTCTGTTTCTTCGTAAGATGTACTG
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CCAGTTATCGTTTAGCGCCTTTTGAATATTAAAC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TTTATTACCTGAACCGCTTGTCTACAAATTAGCT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT

>LR134474|3|3|1925459-1926419|CRISPRCasFinder
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CTTTGGTGGTGTACCGCCTTGTGGTGGGGTGCCACC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TTGAAAATTGTAACGCGAATGAAGTCCGCTTCTT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TAACGAACCATCTTCCCAGCTACCGCTACCTGTTG
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TCTACCGCCTCCATAAAGATGTCCGGCAAGCTGAC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CATAAAAATGCTGAAATAACACCTAAGAGCGCC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	GGCAATAGCTCGCCAATATACTCACTTAGTGCCTC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CTTGCATACGCGGTCTGCCTCAATCATCGTCACTT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TAAAGACATGTCCTCACATTGCTTAGTAACTCAG
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	AATATCCCCGAATCATTGCTGAATAGTTCGATTGC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	AATGCGACTATATTGTATTAGATACTCAAAACGT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	ACGAATAGATTGCAATACTAATATGAAGTCAAA
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	ATAGGCGCGTTCTGTTTCTTCGTAAGATGTACTG
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CCAGTTATCGTTTAGCGCCTTTTGAATATTAAAC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TTTATTACCTGAACCGCTTGTCTACAAATTAGCT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT

>LR134474|3|2|1925459-1926419|CRT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CTTTGGTGGTGTACCGCCTTGTGGTGGGGTGCCACC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TTGAAAATTGTAACGCGAATGAAGTCCGCTTCTT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TAACGAACCATCTTCCCAGCTACCGCTACCTGTTG
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TCTACCGCCTCCATAAAGATGTCCGGCAAGCTGAC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CATAAAAATGCTGAAATAACACCTAAGAGCGCC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	GGCAATAGCTCGCCAATATACTCACTTAGTGCCTC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CTTGCATACGCGGTCTGCCTCAATCATCGTCACTT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TAAAGACATGTCCTCACATTGCTTAGTAACTCAG
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	AATATCCCCGAATCATTGCTGAATAGTTCGATTGC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	AATGCGACTATATTGTATTAGATACTCAAAACGT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	ACGAATAGATTGCAATACTAATATGAAGTCAAA
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	ATAGGCGCGTTCTGTTTCTTCGTAAGATGTACTG
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	CCAGTTATCGTTTAGCGCCTTTTGAATATTAAAC
GTCTCACTCTACATGAGTGAGTGGATTGAAAT	TTTATTACCTGAACCGCTTGTCTACAAATTAGCT
GTCTCACTCTACATGAGTGAGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134474.1\|VEI06718.1\|1930215_1931709_+\|Glycerol-kinase	unknown	unknown	gnl\|CDD\|234594
LR134474.1\|VEI06728.1\|1935009_1935315_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134474.1\|VEI06722.1\|1931989_1932895_-\|ComEC-family-competence-protein	unknown	unknown	gnl\|CDD\|225212
LR134474.1\|VEI06694.1\|1917655_1918267_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|376980
LR134474.1\|VEI06700.1\|1919338_1919617_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|377551
LR134474.1\|VEI06704.1\|1919975_1922069_+\|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LR134474.1\|VEI06716.1\|1927997_1929605_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|349905
LR134474.1\|VEI06724.1\|1933077_1934400_+\|Coniferyl-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143452
LR134474.1\|VEI06692.1\|1915504_1915870_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|379669
LR134474.1\|VEI06726.1\|1934470_1934956_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134474.1\|VEI06702.1\|1919613_1919808_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134474.1\|VEI06708.1\|1922728_1924351_+\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
LR134474.1\|VEI06720.1\|1931764_1931989_-\|Protein-of-uncharacterised-function-(DUF3006)	unknown	unknown	gnl\|CDD\|378598
LR134474.1\|VEI06706.1\|1922081_1922747_+\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
LR134474.1\|VEI06712.1\|1926455_1927301_-\|Integrase-core-domain	unknown	unknown	gnl\|CDD\|222853
LR134474.1\|VEI06710.1\|1924350_1925256_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
LR134474.1\|VEI06714.1\|1927303_1927585_-\|Transposase	unknown	unknown	gnl\|CDD\|225511
LR134474.1\|VEI06730.1\|1935391_1935760_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134474.1\|VEI06698.1\|1918816_1919209_-\|Transposase-C-of-IS166-homeodomain	unknown	unknown	gnl\|CDD\|379018
LR134474.1\|VEI06696.1\|1918426_1918774_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|376980

Protein	Function_ID	Function_description	E-value
LR134474.1\|VEI06722.1\|1931989_1932895_-\|ComEC-family-competence-protein	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.9022e-76
LR134474.1\|VEI06694.1\|1917655_1918267_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	4.8433e-48
LR134474.1\|VEI06700.1\|1919338_1919617_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	8.81858e-35
LR134474.1\|VEI06704.1\|1919975_1922069_+\|helicase-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	8.43258e-47
LR134474.1\|VEI06718.1\|1930215_1931709_+\|Glycerol-kinase	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
LR134474.1\|VEI06724.1\|1933077_1934400_+\|Coniferyl-aldehyde-dehydrogenase	gnl\|CDD\|143452	cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.	0
LR134474.1\|VEI06692.1\|1915504_1915870_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|379669	pfam14690, zf-ISL3, zinc-finger of transposase IS204/IS1001/IS1096/IS1165.	0.000104767
LR134474.1\|VEI06716.1\|1927997_1929605_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|349905	cd05654, M20_ArgE_RocB, M20 Peptidase arginine utilization protein, RocB. Peptidase M20 family, ArgE RocB (arginine utilization protein, RocB; arginine degradation protein, RocB) subfamily. This group of proteins is possibly related to acetylornithine deacetylase (ArgE) and may be involved in the arginine and/or ornithine degradation pathway. In Bacillus subtilis, RocB is one of the three genes found in the rocABC operon, which is sigma L dependent and induced by arginine. The function of members of this family is as yet unknown, although they are predicted as deacetylases.	0
LR134474.1\|VEI06708.1\|1922728_1924351_+\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	3.57642e-79
LR134474.1\|VEI06720.1\|1931764_1931989_-\|Protein-of-uncharacterised-function-(DUF3006)	gnl\|CDD\|378598	pfam11213, DUF3006, Protein of unknown function (DUF3006). This family of proteins has no known function.	1.7052e-10
LR134474.1\|VEI06706.1\|1922081_1922747_+\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.55456e-65
LR134474.1\|VEI06712.1\|1926455_1927301_-\|Integrase-core-domain	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.82026e-46
LR134474.1\|VEI06710.1\|1924350_1925256_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.3459e-126
LR134474.1\|VEI06714.1\|1927303_1927585_-\|Transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.12729e-13
LR134474.1\|VEI06698.1\|1918816_1919209_-\|Transposase-C-of-IS166-homeodomain	gnl\|CDD\|379018	pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This is a leucine-zipper-like or homeodomain-like region of transposase TnpC of insertion element IS66.	0.00524474
LR134474.1\|VEI06696.1\|1918426_1918774_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	9.18126e-24

>LR134474.1|VEI06710.1|1924350_1925256_+|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair
MVGLLNDENKRYDFLLVFDVKDGNPNGDPDAGNLPRVDSETNEGLVTDVALKRKIRNYVHLTKSGENRFDIYVKNRGILSQEQAKAYEALGLENVEKPAATVVKDAREWMCNQYYDTRMFGAVMSGKKYNAGQVKGPIQLTFARSVDPIMPLDMTITRVALTNANDGQKEETEDGGVEAKHGTFGRKAYVPYGLYVAYGYYTPSFAKQTGVQSEDLEVFWKALINMWDLDRSAARGQMATRALYVFEHDSEYGNAPAHVLFDKISITKKPEVLVTRKFSDYDINIKSFDIDGIKMHNLVDY
>LR134474.1|VEI06708.1|1922728_1924351_+|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG
MYIKRLIEFAEANPKLFPAEGFQLKKIDWIVDIEMGSMNVTFNEAEEQKRIVPSVNRTREVRPALIVDRADYVFGKASKEKDQARSKIRQNTYLLLLEDYLSKTNDEDIKVLIEILHEEIPLPLSMKESDIISFRIRDEDYLHENEKVKHYILEELKNKNESTVDHQTKCMFCGQIEQILDVHTISFKVNRENTKLISANENAYESQGISKSKVAPTCHSCEQKYGKALEYFLQKKSIGNERNHVLRVGELNYVYWLHGDKMEGNVATTFQLLDKNNLQSLKTFIKQIFSGIKRDVEFEGLSILVLSANKGRLVVRDYFENKAITIINRIESFLNAQDIGEERLYNVFSLASATYQNTSQMKVSDLQDWFNWVFKGQPLPKRILVQLLKRIQSEGRMHKLYFAVLKSWLCSQKNGRDWTVKFDEENRNPAYIVGNIFALLEKVHQSARGSSTDSLSNKYFGSMSTTPKTVFAVLMKNYQHHLAKIADVNKGGAIYYDKKMITLLSSLQQMPTLFTLDEQAEFTLGYYHEKERLWTKKEEV
>LR134474.1|VEI06706.1|1922081_1922747_+|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG
MLRRSKVSVKVFGNGALFVRPESKVERVSYPIITPSAARGILEAIFWKPEFKYQITKIKALEWPEFTSIVRNETSSKAVINKAFMNNPINKYIEDTRQLRHSLFLKKIAYIIEAEIILLEETAHPIKKYEVMFNRRVTKGQCFARPYFGTREFSCHFSCVEGNEEIIDWTEEVGPMFFDYFYSKNKEITQPHYFNANIVKGEMTIPQYLYKEVYKECILND
>LR134474.1|VEI06704.1|1919975_1922069_+|helicase-Cas3
MGNDGMIAHVNHDKNGEVHTWEAHSKAVGILASQFMQSYDPFRVAEISGILHDVGKLSNEFQKYIVQENGKRGSVKHALPGAALIFRNSLTIEGRLKNISFLIQIIIAGHHRGLYDLDQEFNNRLKTTCELQEENEGINHLITIELRKIEQGKKHINEYSDQALSLLTRLAFSALIDADWLDTEAFFNEERKEQRNFIYPSMEKLLIKFDCYMLENKNDYIKHKENPKLDEFRALARSMGEEMGSLFELVSPTGTSKTFSSLSFALLHAIKQGKSNIIVALPLINLTSEIAEIYKKIFGEANVVEDHSAFDFTTESISKIAIENWNRPFVITTTVQLFESLFSNKPAKLRKIHRLANSVLIIDEYHLLPLHELIPILKALDLLQSYFGLTVLLVSATPFPLMESKEINRLNLKNKPTQIIKEQVIPTKKYELKLEKNIKMEEMSLKNSGNSTLMIVNTRKRAQQLFILAREVVNENEIYHLSTALTVGDRKKYLDEIKTKILNGEKILVIATQVMEAGVDISFKQVYRELAPLPSIIQAAGRCNRYSEYEIGVVTLFSFDDEYYPNALYRNGVKQLDYLIQKYGLQNIMTKKVVEVYYKRLLSQELIKTTIKDEDCFMFEKIAKEFKMLNSYNTKVICVNGTGFEKKWLHEKVNNNWWRKVNHYTAELPKKLEYLCEKHNDVLLWTGEYDQKLGIRV
>LR134474.1|VEI06702.1|1919613_1919808_-|Uncharacterised-protein
MPTNKLTIVPVKLDPLSVETVTFHSSQYTAEPSCVIKTAAAEIAFFNGVDERIIQTIMKELNSR
>LR134474.1|VEI06700.1|1919338_1919617_-|Transposase-and-inactivated-derivatives
MKHDFTSVQNIYIICGKTYMRKGIDGLATLIQDSFELDPYSDSIFLFSEWSKDRYKCLYFDGDGFAMLYKRLDNGKLQWPKDENEVRNLTQQ
>LR134474.1|VEI06698.1|1918816_1919209_-|Transposase-C-of-IS166-homeodomain
MNTLDNNSVTETVIQLLEKQLAYSNQQNQELSAKLDQALAQIHHLTKALYGSKSEKSKYQAPDGQGSLFNDDSSFNEPEQTDEQSMETVSYTVTRKKTNKKRNDSFRDDIEIEELHHHPTNLACDCCHNE
>LR134474.1|VEI06696.1|1918426_1918774_-|Transposase-and-inactivated-derivatives
MKRVQHFEHVYECISCKNDATQKAQIKRGKAPQGAIQRSIAGPTVLAKLIYDKFIQYLPLYRQVNEWERHGLHTNDKNLSNWVIRVAEDWLQPLYDLMKQLLTAKSVLHIDDTYA
>LR134474.1|VEI06694.1|1917655_1918267_-|Transposase-and-inactivated-derivatives
MICDGYSAYGRLPNVQFANCWAHVRRYWLKADSKNGRIGVEYCDRLFHIELRIKHLSPEERVQIRQQEAKPIVDEFFAWIDRSPFYGKNAIAKATEYTLSRAEELKVFLENGNVAIDNNPAENAIRPNVIGRKNWLFSVSEAGAKANAICLSLAETAKANGIDFYQYLVKLMTDLPNLPFHQQPEILHNYLPWSENIQATCAK
>LR134474.1|VEI06692.1|1915504_1915870_-|Transposase-and-inactivated-derivatives
MSINHDIRNLLDIQDSNIHFATNCVNQKLYKGRMSKFISAKLTYTPRNCKVCGMANKDFSIIKNGTQESRISLPMVGVHRTFLLLKKQRFFCKSCSSTFVAESKVVDRLCCISNQSKSLGF
>LR134474.1|VEI06712.1|1926455_1927301_-|Integrase-core-domain
MIRNNAHKYSVSAMCAVLEIKRSTYYYQINLDATSQQKTEDMALSKEIARIFKESRNNYGTRKIKRELLKLDKPKRASRRLISRIMGALGLVSNYTVAQFKPNKSCSNEALVKNELQREFIQEKELAVVVSDLTYVRVSGKWHYVCLLVDLFNREIIGHSVGESKTASLVYKALASISANLNNIQMFHTDRGKEFDNKLIDDALETFNIQRSLSMKGCPYDNAVAEATFKVFKTEFANQANFSTVDQLEIELNDYVHWFNNIRIHGTLGYLTPMEFKLQPI
>LR134474.1|VEI06714.1|1927303_1927585_-|Transposase
MPRQRRTFTPEFKLQMVKLYENGKSRADIAREYDLTPSGLDKWIKNHRATGSFAAKDNRTDAEIELEKLRKENQRLLMENDILKQAALIMGRK
>LR134474.1|VEI06716.1|1927997_1929605_+|succinyl-diaminopimelate-desuccinylase
MNWQTPERLRELLCEVVSWGSETFTEGEKEFSRNLQKKMMELPYFQKFPEQLNLVDVDYGRQVVSAFYDSKQVKDTVVLISHFDTVQTEEYGELQHLATHPEELTKRLIEQPDFLNEAAQIDLAKGDYLFGRGVMDMKMGLCLHMQLIEKAIAEQWPINLLLITVPDEEVNSAGMRKAVEHISEMRDEKGLALQLFLNSEPSFSQGPDDIKEYIYSGTIGKIMPAALFYGKETHVGEPLKGITAPFMSAYLTAEMEFNDRFEETVYGETTPLPVSLQLRDLKDQYSTQTPYRSAALYNVFLLKRSASEIFDIFEQITQEAMEKCNTRYKEICAQKNVNPVGEIKTIRYHDLKQYALKKLGAEKLAKIENAIFENDAFDDRAKSIKVAEQLMIHCKELAPATVIMFAPPYYPPANSSEHPFIKEAIAHLLEAATPYDIPLEQIHFFNGICDLSYCQFVLDDGWKSYEENTPVWGSTYSIPFEEIAKFDAPVLNVGPFGKDAHQISERLHVKSAFEEMPTLIEGLIQKIMKKENAPV
>LR134474.1|VEI06718.1|1930215_1931709_+|Glycerol-kinase
MTEKFILALDQGTTSSRAILFNQAGEIHYSYQQEFPQYFPETGWVEHDAEQIWSSILSCIATVLADKHIDASQIAGIGITNQRETTVIWDKNTGKPIYNAIVWQSRQTADICEELKTNGYNDLFRDKTGLLIDAYFSGTKVKWILDNVAGAREKADNGDLLFGTIDTWLIWKLTNGKVHVTDYSNASRTLMYNIYDLQWDAELLDILNVPKSMLPEVKGSSELYGHTDPTCFFGGEVPIAGAAGDQQAALFGQTCFEEGMVKNTYGTGCFMLMNTGSKAVKSKNGLLTTLAWGIDGKVTYALEGSIFVAGSAIQWLRDGMRMIKDSADSELYASRVDSTEGVYVVPAFVGLGTPYWDSEVRGAVFGLTRGTTKEHFIRATLESLCYQTNDVLGAMEADSGIPFKTLRVDGGAVANNFLMQFQSDLLNVPVDRPVINETTALGAAYLAGLAVGFWQSKEEIAAYWKLDHQFEPEMAEVTRKSNYEGWKKAVMAAQIFK
>LR134474.1|VEI06720.1|1931764_1931989_-|Protein-of-uncharacterised-function-(DUF3006)
MVKGIIDRFEGDFVIIEMSDSGLTKDFPIANLQSDLQVGDVVEIDEALFIKKDELSTIQKKAEIEQLMDDLFED
>LR134474.1|VEI06722.1|1931989_1932895_-|ComEC-family-competence-protein
MKQKFIYAIAILFLAVVAIVFLQDEEPTSQQEAKQDTSVNSQSLKKSEEVKIHIIDIGQGDAILVQSKEDAYLIDGGNKGKGDDVLDYLHEQNVDHLTAVISTHPDADHIGGLAEVIRGIEVQSVYAPKVSHTTEAFKQFLLAVKEKSLKIKSVTSGGSISTNTSNLTLDFLGPTKDYSKSDLNDWSAVLQVTHGDKKFLLTGDAETPAERDMLTAGLLGPVDVLKVSHHGAAEATNKAFLDVVKPHLAAISVGEGNRYKHPTKDTLNRLKDANAKIYRTDQHGSIIFVSNGKNIIVKVER
>LR134474.1|VEI06724.1|1933077_1934400_+|Coniferyl-aldehyde-dehydrogenase
MEQTITSEIKSIFEKQVKHQWVLKKTSAQERIDKLQQLSEALVKFTPEIIEAAICDYDRPASEEQGQIDAVIGVIKHTSENLAEWMKPEVLPSDEQSKVQIMYEARGVVCVMGTWNSPLSTCVHPLVEAFAAGNCVVIKPSEMTPNYSLIIQKIMKTVFDEQEVAVVLGDATVANELLEYPFNHFFFTGSPRVGKLVMAGAAKHLASITLELGGKSPVIIAPDADMQQAAQQLVFGKILMGGQLCICPDYLFVHEDDVPNFTANYEGVTKYMLYGEDGKIRESERTTIVNENHYNRLKGLFDDAIQKGAKVLCGGTFNDELRLIEPTVLGNVTDDMRITEEEVFGPITFIHTYKDVEEAIQYIQARPKPLALYIFSKDEQFQNTILNETSSGGVTINGIIMHNVHPGLPFGGVNNSGIGSFHGIHGFKALSHARSVYNIL
>LR134474.1|VEI06726.1|1934470_1934956_+|Uncharacterised-protein
MRRGIVFLLFLIIVFMLTACNKGTMHSIQYGKIDQNGNIVITKTIKSDPIFENSEKLLGRMRNIFLEKDQVNHLSTQYIQFRNERQNMVISNYYLWDDEKNDRFICRPYFDDAILFYEITGHEYRMLKKEIDKIKASKEPLLDHNERNKSPIEKKPIFSTD
>LR134474.1|VEI06728.1|1935009_1935315_-|Uncharacterised-protein
MNKRFKITRLDEQQNPTITLQQCKEYFATLPDFTYEDAFISKNKEGVTMTIKGDFFMWQIQDVSFPFRFFDGEIYVAVSHPIIMKKVQEIASDLQAEFIEG
>LR134474.1|VEI06730.1|1935391_1935760_-|Uncharacterised-protein
MELFLNTQHKLDFEYLLNCHSRYATEIPLNEWSSTSYIIAGMNLNDAFLSVLQPDLTIDPHKLQLFSSLLNSKEQLFLLYALQQSYHFAFQNIQLDAVLKNSTTDELHLLINACDTNYFQKS

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Crispr_ID: LR134474_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134474_4

2941292-2941402

Orphan

Consensus_repeat	Method
AAGTCAGATGCTCTACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134474_4

>merge|LR134474|4|2941292-2941402|CRISPRCasFinder
AAGTCAGATGCTCTACCAACTGAGCTAATGACTCACTGTGAATGGTGCCGGCGAAAGGAGTCGAACCCTCGACCTACTGATTACAAGTCAGTTGCTCTACCAACTGAGCTA

>LR134474|4|4|2941292-2941402|CRISPRCasFinder
AAGTCAGATGCTCTACCAACTGAGCTA	ATGACTCACTGTGAATGGTGCCGGCGAAAGGAGTCGAACCCTCGACCTACTGATTAC
AAGTCAGTTGCTCTACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LR134474.1\|VEI08608.1\|2930954_2932682_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|224087
LR134474.1\|VEI08606.1\|2930145_2930967_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|274729
LR134474.1\|VEI08632.1\|2953111_2954656_-\|1-pyrroline-5-carboxylate-dehydrogenase-1	unknown	unknown	gnl\|CDD\|179543
LR134474.1\|VEI08620.1\|2946916_2947801_-\|Predicted-permease,-DMT-superfamily	unknown	unknown	gnl\|CDD\|273359
LR134474.1\|VEI08636.1\|2956153_2956528_-\|General-stress-protein-13	unknown	unknown	gnl\|CDD\|181215
LR134474.1\|VEI08612.1\|2934177_2935110_-\|Membrane-dipeptidase-(Peptidase-family-M19)	unknown	unknown	gnl\|CDD\|366534
LR134474.1\|VEI08610.1\|2932671_2934060_-\|Isochorismate-synthase-entC	unknown	unknown	gnl\|CDD\|224091
LR134474.1\|VEI08630.1\|2951817_2953011_-\|Ornithine-aminotransferase	unknown	unknown	gnl\|CDD\|179736
LR134474.1\|VEI08600.1\|2927513_2928611_-\|Pseudouridine-kinase	unknown	unknown	gnl\|CDD\|238916
LR134474.1\|VEI08618.1\|2937932_2939240_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|225995
LR134474.1\|VEI08602.1\|2928716_2929166_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134474.1\|VEI08622.1\|2947948_2948668_+\|putative-Mg(2+)-transport-ATPase	unknown	unknown	gnl\|CDD\|224204
LR134474.1\|VEI08604.1\|2929307_2930126_-\|1,4-Dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
LR134474.1\|VEI08634.1\|2954798_2956130_+\|Transcriptional-regulatory-protein-ZraR	unknown	unknown	gnl\|CDD\|226350
LR134474.1\|VEI08616.1\|2936363_2937572_-\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|225995
LR134474.1\|VEI08626.1\|2949688_2950402_+\|Serine/threonine-protein-phosphatase-1	unknown	unknown	gnl\|CDD\|277316
LR134474.1\|VEI08624.1\|2948686_2949676_+\|zinc-transporter-ZitB	unknown	unknown	gnl\|CDD\|223131
LR134474.1\|VEI08638.1\|2956740_2958069_+\|Na+-dependent-transporters-of-the-SNF-family	unknown	unknown	gnl\|CDD\|271367
LR134474.1\|VEI08614.1\|2935237_2936206_-\|D-alanyl-D-alanine-carboxypeptidase-dacB-precursor	unknown	unknown	gnl\|CDD\|224600
LR134474.1\|VEI08628.1\|2950455_2951700_-\|NAD-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|223411

Protein	Function_ID	Function_description	E-value
LR134474.1\|VEI08608.1\|2930954_2932682_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylate-synthase	gnl\|CDD\|224087	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism].	0
LR134474.1\|VEI08606.1\|2930145_2930967_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	3.95265e-108
LR134474.1\|VEI08612.1\|2934177_2935110_-\|Membrane-dipeptidase-(Peptidase-family-M19)	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	1.53206e-103
LR134474.1\|VEI08636.1\|2956153_2956528_-\|General-stress-protein-13	gnl\|CDD\|181215	PRK08059, PRK08059, general stress protein 13; Validated.	8.1085e-52
LR134474.1\|VEI08614.1\|2935237_2936206_-\|D-alanyl-D-alanine-carboxypeptidase-dacB-precursor	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	1.04315e-52
LR134474.1\|VEI08610.1\|2932671_2934060_-\|Isochorismate-synthase-entC	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.83783e-119
LR134474.1\|VEI08630.1\|2951817_2953011_-\|Ornithine-aminotransferase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
LR134474.1\|VEI08600.1\|2927513_2928611_-\|Pseudouridine-kinase	gnl\|CDD\|238916	cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.	2.92344e-85
LR134474.1\|VEI08618.1\|2937932_2939240_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.01911e-90
LR134474.1\|VEI08632.1\|2953111_2954656_-\|1-pyrroline-5-carboxylate-dehydrogenase-1	gnl\|CDD\|179543	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional.	0
LR134474.1\|VEI08622.1\|2947948_2948668_+\|putative-Mg(2+)-transport-ATPase	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.99083e-49
LR134474.1\|VEI08626.1\|2949688_2950402_+\|Serine/threonine-protein-phosphatase-1	gnl\|CDD\|277316	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.58989e-25
LR134474.1\|VEI08604.1\|2929307_2930126_-\|1,4-Dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
LR134474.1\|VEI08616.1\|2936363_2937572_-\|Transposase-and-inactivated-derivatives	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.82209e-92
LR134474.1\|VEI08620.1\|2946916_2947801_-\|Predicted-permease,-DMT-superfamily	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.37779e-16
LR134474.1\|VEI08624.1\|2948686_2949676_+\|zinc-transporter-ZitB	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	3.71873e-37
LR134474.1\|VEI08638.1\|2956740_2958069_+\|Na+-dependent-transporters-of-the-SNF-family	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	0
LR134474.1\|VEI08634.1\|2954798_2956130_+\|Transcriptional-regulatory-protein-ZraR	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	8.60764e-80
LR134474.1\|VEI08628.1\|2950455_2951700_-\|NAD-specific-glutamate-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0

>LR134474.1|VEI08618.1|2937932_2939240_-|Transposase-and-inactivated-derivatives
MIYVKNGEKKHSFTNSFILKMLNNKRKKGELCYMKSIMNMPGLKDVLITKIEEIEGKYALYIELPKVPHTCPSCRSITSKVHDYRIQRISHLKWFERLTVLYYKRRRYSCSCGKRFSEKSSFIDRYQRFSKEWNQAIQILGVKSPTFKSVAEKMGTSISTVIRRFDKVAEKQLTSGVTLPKIIAIDEYKGDTNAGKFQLVIANAETHEPIDILPNRRKDTIKQYLQEYGDQVEIVVMDMNQSFKAAVKDALNRPVIIADRFHYCRYIYWALDKVRRSVQGEWHVYDRKRLKRMRYVFYKREAQLNEKQLWELNRYRSLSPLLKSAHELKEAYCEWFDWAKTSTDMIEIKERLSLFYRKVIEHDIPAFNQVMKTMKNWQTEILNSFAFGYSNGFLEGINNKTKVMKRNAYGYKRFDRFRAKILLAIKYKKVGLHLG
>LR134474.1|VEI08616.1|2936363_2937572_-|Transposase-and-inactivated-derivatives
MKSIMNMPGLKDVLITKIEEIEGKYALYIEMPKVPHDCPSCHSITSKVHDYRIQRISHLKWFERLTVLYYKRRRYSCSCGKRFSEKSSFIDRYQRFSKEWNQVIQILGVKSPTFKSVAEKMETSISTVIRRFDKVAEKQLTSGVTLPKIIAIDEYKGDTNAGKFQLVIANAETHEPIDILPNRRKDTIKQYLQKYGDQVEIVVMDMNQSFKAAVKEALNRPVIIADRFHYCRYIYWALDKVRRSVQGEWHAYDRKRLKKMRYVFYKREAQLNEKQLWELNRYRSLSPLLKSAHELKEAYCEWFDWAKTSTDMIEIKERLSLFYRKVIESDIPAFNQVIKTMKNWQTEILNSFAFGYSNGFLEGINNKTKVMKRNAYGYKRFDRFRAKILLAIKYKKVGLHLG
>LR134474.1|VEI08614.1|2935237_2936206_-|D-alanyl-D-alanine-carboxypeptidase-dacB-precursor
MKKWIYLIVGLVILAGASIAAVQLIENDRSEISQQEHNKGINKPKAKKEKTAIEKDEPIKDQNTSNMKIKSEEALLIDLSSEKVLFAKNADQKAYPASLTKLMTVLVGVEENKNIHSIAEVPAAIFPYLTSANASMAGFSPNEKVTIEDLLNGAMLPSGGDASLALALHTAKNKKEFVKLMNEKAKALGMTNTNFKNVEGLHEKGHYTTAHDLMKLMTYGMKIPAFKKVITAQKYYVKPTNMHPSGLTLNSSLFTKLDMNKKRGYTLLGGKTGYTPESGLSLVSIAKKNGKLYVAITMNAPGTNRTTQYNVLDSLDLYKSIK
>LR134474.1|VEI08612.1|2934177_2935110_-|Membrane-dipeptidase-(Peptidase-family-M19)
MKVIDLHCDVLYKLAGTEEGASFKNSDQLDVNLEKLKKGGVKAQVFAIFVDDHLNETQRYMEALRQVEKFQYEVIAPYEEMVHITDWQQFEQLEEHQIGAILSLEGCDAIGESLEKLQSFIDAGILLAGLTWNHENAVAYGANEDATKGLKPFGYEVIQKLNDAKIIVDVSHLNEQGFWDVLKVTDRLIASHSNAYAVRAHQRNLKDDQIKALIEHGGHMHCVFYPLFIKESEQVTMTDLIEHIQHIANLVGADKIGLGSDFDGIDQKVIGLENASQYPMFLELLKPHFTEIEIEGIAANNFERFISVIE
>LR134474.1|VEI08610.1|2932671_2934060_-|Isochorismate-synthase-entC
MNHKLSTTNDDLKNTDQSTVRFYIETLEIDRLSALPFFEAGEKSFEGMRYFWQNREKNFTLVGLGNAYTIESNEENQRYTNVENQWKQLLQGVDYENLLQQPILFGSFTFDPKKGVSDEWSNFSHANFALATHQLVIRNEKAYVNTHIVSKQNISEEQISKLLAERDEIIHQAQVKGSKTYAKPVVNRMTEPFKEEYLKSISNVTDAIKDGQADKVVIARSLALRFDEKVDPTNVLTQVYNEQPESYLFGQENGENLFFGASPERLVSVKDGQAYSSCIAGSIKRGATKEHDNALGAELLNDEKNLQEHQYVVDMITSSFEDTCSSYTVPESPQLLKIRDIQHLYTPVEGYLNDGATILQMVEKLHPTPALGGAPRGKAMEMIRQYEPMNRGIYAGPIGWLNAEGDGEFAVAIRSALLQKDQAYLYAGGGIVADSEPQSEYEETLVKFRPMLRALGGKLNDE
>LR134474.1|VEI08608.1|2930954_2932682_-|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylate-synthase
MTNKEVLTEYVYQMISALSSYGVKDVVISPGSRSTPLAYAFASSKEFRIVRHVDERSAGFLALGMAKTASAPVVLLCTSGTAAANYFPAIVEAYYARIPLIVLTADRPHELRGVGAPQAIDQPNLYGHHVKWTVDLPIPDGESPTLPHIERHMARATSLAMTSPRGPVHINVPFREPLLIHFKDELPAITFNQADLAELTPTARGIDLLEQAIKSAEKGFLIIGEMDQSVSQDILWSFIRHLKWPVLVESLSHLRSNIPEDCMMYIVEHYDSILKNDLFKQHMAPDTVIRFGAQPVSKPLTLFMKAVKPATIITVDEDALFRDPLAVTTNHIQAQLGEWLTTVDCFDQIFEKDYLMKWLAANDIATQFVKQYIQNEQDEGALAGLLFERLEDGADLFASSSMPIRDVDTFFCKTEKDVQVFANRGTNGIDGVVSTAIGTQLVTNRELYLLIGDLSFLHDSNGLIASRYQDVNLTVVVMNNDGGGIFSYLAQSTVEAHFEQLFGTATGLTFDHLAAMYDAQYDVVKSKEEFIAAIHTSKKKPLRIIEVMTDRQENVVTHRKLWTAMGEELNKLWQV
>LR134474.1|VEI08606.1|2930145_2930967_-|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MASVVTTINGMDFHYEVFNARMEETVVLLHGFTGSTKTWHEVVELMPTTKRIILIDLIGHGQTASPKQLHFYTMKEQVELLEAFFNWKGIQTFSLVGYSMGGRVALAYAMKYPARIEKLVLESSSPGLESLEDREARMESDQLLASRIEEAGVETFVDYWQDIPLFKSQKKLSEAQQKAIRQERLQQSAIGLANSLRGMGTGRQKSYWRELSNFEKPVVLLSGELDKKFIKKAEQMAALFPQCDHQTILGVGHAIHVENPQSFATIVKEQLYL
>LR134474.1|VEI08604.1|2929307_2930126_-|1,4-Dihydroxy-2-naphthoyl-CoA-synthase
MTRQWVTEHVYEDIKYESYNGIAKITINRPEVRNAFRPKTTAELIDAFSRARDDAKIGAIILTGEGEKAFCSGGDQKVRGNGGYVGDDNIPRLNVLDLQTLIRKTPKPVVAMVAGYAIGGGHVLHIVCDLTIAADNARFGQTGPRVGSFDGGYGAGYLARIVGHKKAREIWFLCRQYDAQEALDMGLVNTVVPYAQLEDETVQWCEEMLALSPMALRMLKGAFNADSDGLAGIQQLAGDATLLYYTSDEAKEGRDAFKEKRQPDFGQFPRFP
>LR134474.1|VEI08602.1|2928716_2929166_-|Uncharacterised-protein
MKKYLRKIIVAVLVVIVLAIVILFINDKPPKPLVVANGKTISTLQSTYCWEKIMNNECVDMISPTDQIAKEKVEPIIVAPNSTIQIQYKKQPKSPIEVSIWDEKSESKTVEMNDGVLKAPNKKGRYIYSVGGHWAKGSSTAIFMIEVRD
>LR134474.1|VEI08600.1|2927513_2928611_-|Pseudouridine-kinase
MTLTEREQALIQLIKANPFMSQQDMADHMKMSRPALANLISGLVKKGKIVGRAYVLPRENNIICIGGANIDRKLHVKGEVQMGTSNPVYSTQSVGGVARNIAENLGRLDNKVALLTTAGKDTDWQAIVTASEAFINLDDVEQLQHATTGSYTAIMDEAGELVMATANMDVYEDLKPRVLMKHDLALSTAPVMIIDLNCPKETVEYVQQFAIARGVPLVIVPVSSPKMDRLTTDLQGVTWFICNTDEAETLLNTSIKTEEQYKEAVTKIIALGAENVIITAGAKGVYAANTTLMPTHFEAKTVNHVEDVTGAGDAFVAAVVHAWLEKRPFEQAIEAGLINAKCTLESPFTVRPELTKESLENELED
>LR134474.1|VEI08620.1|2946916_2947801_-|Predicted-permease,-DMT-superfamily
MPPLLVIFIGVLSVSASAIFVKLSTAESGTIAFYRMFLSVLIMLPLFLKNNLHELKEIRSRDWVFSTIAGILLAFHFILWFESLRYTSVASSTVLVTLQPLFAIFGTYFFFKEKITLKSVLAMIIAIGGSFLISWGDFQVGGTAFYGDILALIACALVTGYMLFGQDLRRRIGLTTYTIIVYTVSAVTLAIYMLVKGESFTTDDPMNWLWFLLLAIVPNLLGHNLFNWALKYVSANTISIAILFEPVGASIMAFLVFGEVLISSQYIGGAIVIVGILLYVIDFKQLFKLFQKNY
>LR134474.1|VEI08622.1|2947948_2948668_+|putative-Mg(2+)-transport-ATPase
MGFITDTPFLVESLLKMVIAASLSLGIGVERELKRKPVGLKTSLVIATFSCLLTIISVQSVFEATPVPGINVTMDPLRLAAQIVSGIGFLGAGVILKRTDDSISGLTTAAMIWGAAGIGIAVGAGFYIPAIVAVLIVLFGVEVIAPIFTRLGPERLRMQEINVIIRLEQSDDIEKVIDYLKANDFLLEGLIIKDTRDLNHDLIHEIHIRFSSLPEQDTLNIYTRLKSLPFIDDIEVSIL
>LR134474.1|VEI08624.1|2948686_2949676_+|zinc-transporter-ZitB
MKDIFHLLKGGNKPSLLAGVVNLILGIIKGIAFVFTGNVAMFAEMMHSLGDSANQFFVFIGSALSKKAPTPKFPTGFGRVVNLVCLGAVLIVGILAYETILEGWKHIQHPAASTGIAITISVLALGIILEGIVLLKAAKEIVHEAGQTATIFTVLPKAFANLNHAKPATKLVFMEDTVATSGGIIAIISVLISHFAGWSAAEGIASIIIGVMMFYVVASVFLENARGAIGETDEDMLNHIAYLVSDDENIRDIQRLEVIKEGEVLHVEVMAEVDPTLSFAQVDDIRDHLMEILLTQNKVARVTISFDEDDGITNWSHIGERPDSLKTKD
>LR134474.1|VEI08626.1|2949688_2950402_+|Serine/threonine-protein-phosphatase-1
MKRTLLISDIHGELRLLEELLKKASYSADADQLVLLGDYIDRGPSSKEVIALVRQLKQQGAHVLMGNHEQIMVDVFTSENKYDWDFWIYTAGGLATMRSYGFSESDLDQAGTLDDFSLQPFFTGEIIEDLEFIRNLDKVIEQKDYIFVHAGVEPNIPLNQNTKKSLLWIRDEFHKNYKGNQTVVFGHTPTPALHMNRQNHEIYFGENRIIGIDGGAVFGGQLNCLELPSQKVYFVKK
>LR134474.1|VEI08628.1|2950455_2951700_-|NAD-specific-glutamate-dehydrogenase
MAENLNLFTSTQAIIQKALQKLGYDEGMYELLKEPLRMLEVRIPIKMDNGQVRVFTGYRAQHNDAVGPTKGGVRFHPNVSEEEVKALSMWMTLKAGIVDLPYGGGKGGVICDPRQMSMGELERLSRGYVRATSQIVGPTKDIPAPDVFTNAQIMAWMMDEYSRMDEFNSPGFITGKPIVLGGSVGRDKATAQGVTIVIEEAAKRRNIAIKDARIVIQGFGNAGSFLAKFMSDLGAKVVGISDAYGALYDPEGLDIDYLLDRRDSFGTVTTLFENTISNKELLELECDILVPAAIENQITAENAHKIQASIVVEAANGPTTSEATKILNDRGILLVPDVLASAGGVTVSYFEWVQNNQGYYWTEEEVNERLLKKMVDAFDNVYNVATSRNIDMRLAAYMVGVRKTAEASRFRGWV
>LR134474.1|VEI08630.1|2951817_2953011_-|Ornithine-aminotransferase
MTKSTTIIEQTNSIGAQNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADRVTLTSRAFHSDQLGPWYEAVSELTGKEMVLPMNTGAEAVETAFKAARRWAYDVKGVADGQAEVIACNGNFHGRTMLAVSLTSDAEYRRGFGPLLPGIKLVDYGNLEQLKAAITPNTAAFMIEPIQGEAGIVLPPAGFLKAARELCRENNVLFIADEIQAGLARTGKMFACEWEDVNPDMYILGKALGGGVFPISCVVADRDVLGVFNPGSHGSTFGGNPLACAVSLASINVLKDEKLAERSQELGEYFMGELRTINNPHIKEVRGRGLFIGLELDVEARPYCEELMELGLLCKETHDTVIRFAPPLVISKEELDWALERIKQVFTK
>LR134474.1|VEI08632.1|2953111_2954656_-|1-pyrroline-5-carboxylate-dehydrogenase-1
MIPYKTEPLADFSNEENRQAYREALKKVQGELGKDYPLVIGGEKIFTEEKITSYNPAKKTEVVGTVSKASQELAEKAMQVADETFKTWSKVDAKVRADILFKVAEITKRRRHEMSAMMTIEAGKPWVEADADTAEAIDFFEYYARQMLSLKDGKPVESRPGEYNKFDYRALGVGVVISPWNFPFAIMAGTTVAAVVTGNTVLLKPASTTPVIAYKFMEILEEAGLPAGVVNYIPGSGAEVGDYLVDHPRTRFVSFTGSRDVGLRINERASVLNEGQIWIKRVIAEMGGKDTILVDKEADLELAAQSIVKSAFGFSGQKCSACSRAVIVEDVYDQVVERVTELTKALTIGDPTDPDNFMATVIDEAAFKKVTSYFEVAKEEGRIVAGGTADDSVGYFVNPTVVVDVAPKDRLMQEEIFGPIVAIAKAKDFDEALEIANNTVYGLTGAIISTNREHIERAREDFFVGNLYINRTCTGAIVGYQPFGGYNMSGTCSKAGGPDFLTLHMQPKTVSETF
>LR134474.1|VEI08634.1|2954798_2956130_+|Transcriptional-regulatory-protein-ZraR
MTNENLDLTVFYEFLTENTAIGIHAINAQGETIIYNEKMKKIEGLNLDDVSDRSILDIFRFNNADESTLLQVLQSGQSVINVKQTYWNQNGQEITTINDTYPVMKDGQILGAIEFSRDITTLEKLVNQPLQRYGEPITFEVITAVSNEMKRVIQIAKKAAIAKLPVLLIGESGTGKDLVAEGIHNATDPISEQFITVYCNRSDGNVIDKLAEQLIDLPASTVFCERIEYLSLEQQEKLLEILEQYGTEHLFIASVGNDPIDLIAENLVLKDLYYYFAAMSITIPPLKERLSDLLPFVQDYLSRYRRFFGSQIKGITNEVEQLFMHYDWPGNLKELEVLLDEMGTMMTNEEYITYDILPHHFKLKVQEYRDTTPLHAEDFVIQAEQELMPLDTYLREAESYYLNKVLDKYGQNITKAAEALGMSRQNLQYRIRKMKSTKKTTVD
>LR134474.1|VEI08636.1|2956153_2956528_-|General-stress-protein-13
MSNKYKVGDVVTGKVTGIQPYGAFVSLDEQTQGLVHISEITYGFVKSISEFISVGDTVTVQVLEVEDPNKKISLSIRALREKPQRKKELSPRKSLQNRVNEQDAVGFNSLKEKLNQWIEESGIK
>LR134474.1|VEI08638.1|2956740_2958069_+|Na+-dependent-transporters-of-the-SNF-family
MSNRDQFASKIGFILAAAGSAIGLGAIWKFPYMAGTNGGSVFILLFILCTLVIGLPILVAEFMIGRRGKSDAVTSFKKQAPGKPWFLTGWMGFIFSAIILSFYSVVGGWILSYLIRSVSFRLSSNEKDFFANLFTDLTMNTWEVIIAQGAFLLIIILIISSGIQNGVEKASKWMMPLLFIFFVILAIRSLTLDGAMDGVKFMFVPDWSYLTGKTFLLALGQAFFSLSVGVAAMLTYASYLKRDVNLGSSALNVAWMNIGISILAGLVIFPAVFALGFTPDQGPGLVFIIIPAVFQQIPFGSIFVIFFFILLLFATITSAIAMLEIVVATAMGDKYNQRKKFAWICGIGIFIIGIPSALSFGILSDVKIFGRSIFDFADFVTSSIGMPIGALLVAIFAGYQLKRAEQMEELPVKPWIFNIWRILVRYVAPIAIIIVFIQGFRN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134474_3	3.10\|1926091\|34\|LR134474\|PILER-CR,CRISPRCasFinder,CRT	1926091-1926124	34	MT366947	Bacillus phage Hyb2phi3Ts-SPbeta, complete genome	43797-43830	5	0.853
LR134474_3	3.10\|1926091\|34\|LR134474\|PILER-CR,CRISPRCasFinder,CRT	1926091-1926124	34	KY030782	Bacillus phage phi3T, complete genome	43797-43830	5	0.853
LR134474_3	3.10\|1926091\|34\|LR134474\|PILER-CR,CRISPRCasFinder,CRT	1926091-1926124	34	NC_001884	Bacillus phage SPBc2, complete genome	54308-54341	5	0.853
LR134474_3	3.10\|1926091\|34\|LR134474\|PILER-CR,CRISPRCasFinder,CRT	1926091-1926124	34	AF020713	Bacteriophage SPBc2 complete genome	54308-54341	5	0.853
LR134474_3	3.10\|1926091\|34\|LR134474\|PILER-CR,CRISPRCasFinder,CRT	1926091-1926124	34	MT366946	Bacillus phage Hyb1phi3Ts-SPbeta, complete genome	46396-46429	5	0.853
LR134474_3	3.10\|1926091\|34\|LR134474\|PILER-CR,CRISPRCasFinder,CRT	1926091-1926124	34	MT366948	Bacillus phage Hyb3phi3Ts-SPbeta, complete genome	43797-43830	5	0.853
LR134474_3	3.10\|1926091\|34\|LR134474\|PILER-CR,CRISPRCasFinder,CRT	1926091-1926124	34	MT601274	Bacillus phage vB_BsuS-Goe13, complete genome	44534-44567	5	0.853
LR134474_3	3.10\|1926091\|34\|LR134474\|PILER-CR,CRISPRCasFinder,CRT	1926091-1926124	34	CP052843	Bacillus phage Hybphi3Ts, partial sequence	20178-20211	5	0.853
LR134474_3	3.10\|1926091\|34\|LR134474\|PILER-CR,CRISPRCasFinder,CRT	1926091-1926124	34	MT601273	Bacillus phage vB_BsuS-Goe12, complete genome	44534-44567	5	0.853
LR134474_3	3.10\|1926091\|34\|LR134474\|PILER-CR,CRISPRCasFinder,CRT	1926091-1926124	34	MT366945	Bacillus phage phi3Ts, complete genome	43797-43830	5	0.853
LR134474_2	2.18\|1916780\|32\|LR134474\|CRISPRCasFinder,CRT	1916780-1916811	32	AP014360	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S40-C32, * SEQUENCING IN PROGRESS *	8624-8655	6	0.812
LR134474_2	2.4\|1916779\|33\|LR134474\|PILER-CR	1916779-1916811	33	AP014360	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S40-C32, * SEQUENCING IN PROGRESS *	8623-8655	7	0.788
LR134474_2	2.11\|1917242\|34\|LR134474\|PILER-CR	1917242-1917275	34	MT647606	Pelagibacter phage Mosig EXVC030M, partial genome	88128-88161	7	0.794
LR134474_2	2.25\|1917243\|33\|LR134474\|CRISPRCasFinder,CRT	1917243-1917275	33	MT647606	Pelagibacter phage Mosig EXVC030M, partial genome	88129-88161	7	0.788
LR134474_3	3.10\|1926091\|34\|LR134474\|PILER-CR,CRISPRCasFinder,CRT	1926091-1926124	34	MT601272	Bacillus phage vB_BsuS-Goe11, complete genome	45216-45249	7	0.794
LR134474_2	2.1\|1916579\|34\|LR134474\|PILER-CR	1916579-1916612	34	NC_011774	Bacillus cereus G9842 plasmid pG9842_140, complete sequence	28244-28277	8	0.765
LR134474_2	2.12\|1917308\|34\|LR134474\|PILER-CR	1917308-1917341	34	HM452126	Aeromonas phage phiAS5, complete genome	178666-178699	8	0.765
LR134474_2	2.12\|1917308\|34\|LR134474\|PILER-CR	1917308-1917341	34	NZ_CP020413	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence	289519-289552	8	0.765
LR134474_2	2.15\|1916580\|33\|LR134474\|CRISPRCasFinder,CRT	1916580-1916612	33	NC_011774	Bacillus cereus G9842 plasmid pG9842_140, complete sequence	28244-28276	8	0.758
LR134474_2	2.18\|1916780\|32\|LR134474\|CRISPRCasFinder,CRT	1916780-1916811	32	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	195152-195183	8	0.75
LR134474_2	2.26\|1917309\|33\|LR134474\|CRISPRCasFinder,CRT	1917309-1917341	33	NZ_CP020413	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence	289520-289552	8	0.758
LR134474_2	2.26\|1917309\|33\|LR134474\|CRISPRCasFinder,CRT	1917309-1917341	33	NZ_LN879503	Candidatus Protochlamydia naegleriophila strain KNic plasmid pPNK, complete sequence	50705-50737	8	0.758
LR134474_2	2.12\|1917308\|34\|LR134474\|PILER-CR	1917308-1917341	34	NZ_LN879503	Candidatus Protochlamydia naegleriophila strain KNic plasmid pPNK, complete sequence	50704-50737	9	0.735
LR134474_2	2.18\|1916780\|32\|LR134474\|CRISPRCasFinder,CRT	1916780-1916811	32	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	1491-1522	9	0.719
LR134474_2	2.28\|1917441\|33\|LR134474\|CRISPRCasFinder,CRT	1917441-1917473	33	NZ_CP018869	Sporosarcina sp. P37 plasmid pSporoP37, complete sequence	8886-8918	9	0.727
LR134474_2	2.4\|1916779\|33\|LR134474\|PILER-CR	1916779-1916811	33	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	1491-1523	10	0.697
LR134474_2	2.14\|1917440\|34\|LR134474\|PILER-CR	1917440-1917473	34	NZ_CP018869	Sporosarcina sp. P37 plasmid pSporoP37, complete sequence	8886-8919	10	0.706
LR134474_2	2.18\|1916780\|32\|LR134474\|CRISPRCasFinder,CRT	1916780-1916811	32	MH460463	Dickeya phage vB_DsoM_AD1, complete genome	36690-36721	10	0.688
LR134474_1	1.1\|709337\|57\|LR134474\|CRISPRCasFinder	709337-709393	57	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	900257-900313	11	0.807
LR134474_1	1.1\|709337\|57\|LR134474\|CRISPRCasFinder	709337-709393	57	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1553266-1553322	11	0.807
LR134474_1	1.1\|709337\|57\|LR134474\|CRISPRCasFinder	709337-709393	57	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2548092-2548148	12	0.789
LR134474_4	4.1\|2941319\|57\|LR134474\|CRISPRCasFinder	2941319-2941375	57	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	900257-900313	12	0.789
LR134474_4	4.1\|2941319\|57\|LR134474\|CRISPRCasFinder	2941319-2941375	57	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1553266-1553322	12	0.789
LR134474_4	4.1\|2941319\|57\|LR134474\|CRISPRCasFinder	2941319-2941375	57	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2548092-2548148	13	0.772

1. spacer 3.10|1926091|34|LR134474|PILER-CR,CRISPRCasFinder,CRT matches to MT366947 (Bacillus phage Hyb2phi3Ts-SPbeta, complete genome) position: , mismatch: 5, identity: 0.853

aatgcgactatattgtattagatactcaaaacgt	CRISPR spacer
attgcgattatattgtattagatactcaaagtat	Protospacer
* *****.**********************...*

2. spacer 3.10|1926091|34|LR134474|PILER-CR,CRISPRCasFinder,CRT matches to KY030782 (Bacillus phage phi3T, complete genome) position: , mismatch: 5, identity: 0.853

aatgcgactatattgtattagatactcaaaacgt	CRISPR spacer
attgcgattatattgtattagatactcaaagtat	Protospacer
* *****.**********************...*

3. spacer 3.10|1926091|34|LR134474|PILER-CR,CRISPRCasFinder,CRT matches to NC_001884 (Bacillus phage SPBc2, complete genome) position: , mismatch: 5, identity: 0.853

aatgcgactatattgtattagatactcaaaacgt	CRISPR spacer
attgcgattatattgtattagatactcaaagtat	Protospacer
* *****.**********************...*

4. spacer 3.10|1926091|34|LR134474|PILER-CR,CRISPRCasFinder,CRT matches to AF020713 (Bacteriophage SPBc2 complete genome) position: , mismatch: 5, identity: 0.853

aatgcgactatattgtattagatactcaaaacgt	CRISPR spacer
attgcgattatattgtattagatactcaaagtat	Protospacer
* *****.**********************...*

5. spacer 3.10|1926091|34|LR134474|PILER-CR,CRISPRCasFinder,CRT matches to MT366946 (Bacillus phage Hyb1phi3Ts-SPbeta, complete genome) position: , mismatch: 5, identity: 0.853

aatgcgactatattgtattagatactcaaaacgt	CRISPR spacer
attgcgattatattgtattagatactcaaagtat	Protospacer
* *****.**********************...*

6. spacer 3.10|1926091|34|LR134474|PILER-CR,CRISPRCasFinder,CRT matches to MT366948 (Bacillus phage Hyb3phi3Ts-SPbeta, complete genome) position: , mismatch: 5, identity: 0.853

aatgcgactatattgtattagatactcaaaacgt	CRISPR spacer
attgcgattatattgtattagatactcaaagtat	Protospacer
* *****.**********************...*

7. spacer 3.10|1926091|34|LR134474|PILER-CR,CRISPRCasFinder,CRT matches to MT601274 (Bacillus phage vB_BsuS-Goe13, complete genome) position: , mismatch: 5, identity: 0.853

aatgcgactatattgtattagatactcaaaacgt	CRISPR spacer
attgcgattatattgtattagatactcaaagtat	Protospacer
* *****.**********************...*

8. spacer 3.10|1926091|34|LR134474|PILER-CR,CRISPRCasFinder,CRT matches to CP052843 (Bacillus phage Hybphi3Ts, partial sequence) position: , mismatch: 5, identity: 0.853

aatgcgactatattgtattagatactcaaaacgt	CRISPR spacer
attgcgattatattgtattagatactcaaagtat	Protospacer
* *****.**********************...*

9. spacer 3.10|1926091|34|LR134474|PILER-CR,CRISPRCasFinder,CRT matches to MT601273 (Bacillus phage vB_BsuS-Goe12, complete genome) position: , mismatch: 5, identity: 0.853

aatgcgactatattgtattagatactcaaaacgt	CRISPR spacer
attgcgattatattgtattagatactcaaagtat	Protospacer
* *****.**********************...*

10. spacer 3.10|1926091|34|LR134474|PILER-CR,CRISPRCasFinder,CRT matches to MT366945 (Bacillus phage phi3Ts, complete genome) position: , mismatch: 5, identity: 0.853

aatgcgactatattgtattagatactcaaaacgt	CRISPR spacer
attgcgattatattgtattagatactcaaagtat	Protospacer
* *****.**********************...*

11. spacer 2.18|1916780|32|LR134474|CRISPRCasFinder,CRT matches to AP014360 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S40-C32, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.812

gctagttcttctggtgtttctacgatttcgaa	CRISPR spacer
actggttctgctggtgtttctacgattacaat	Protospacer
.**.***** ***************** *.*

12. spacer 2.4|1916779|33|LR134474|PILER-CR matches to AP014360 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S40-C32, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.788

agctagttcttctggtgtttctacgatttcgaa	CRISPR spacer
tactggttctgctggtgtttctacgattacaat	Protospacer
 .**.***** ***************** *.*

13. spacer 2.11|1917242|34|LR134474|PILER-CR matches to MT647606 (Pelagibacter phage Mosig EXVC030M, partial genome) position: , mismatch: 7, identity: 0.794

atacctacggattttgttggatcagcagattttg	CRISPR spacer
atcacatctgattttattgtatcagcagattttg	Protospacer
**  *  * ******.*** **************

14. spacer 2.25|1917243|33|LR134474|CRISPRCasFinder,CRT matches to MT647606 (Pelagibacter phage Mosig EXVC030M, partial genome) position: , mismatch: 7, identity: 0.788

tacctacggattttgttggatcagcagattttg	CRISPR spacer
tcacatctgattttattgtatcagcagattttg	Protospacer
*  *  * ******.*** **************

15. spacer 3.10|1926091|34|LR134474|PILER-CR,CRISPRCasFinder,CRT matches to MT601272 (Bacillus phage vB_BsuS-Goe11, complete genome) position: , mismatch: 7, identity: 0.794

aatgcgactatattgtattagatactcaaaacgt	CRISPR spacer
attgcgattatattgtattggatactcagagtat	Protospacer
* *****.***********.********.*...*

16. spacer 2.1|1916579|34|LR134474|PILER-CR matches to NC_011774 (Bacillus cereus G9842 plasmid pG9842_140, complete sequence) position: , mismatch: 8, identity: 0.765

atctttcgcgtattcaacagcgaatttaacacca	CRISPR spacer
atttacttcatattcaacagtgtatttaacacca	Protospacer
**.* .. *.**********.* ***********

17. spacer 2.12|1917308|34|LR134474|PILER-CR matches to HM452126 (Aeromonas phage phiAS5, complete genome) position: , mismatch: 8, identity: 0.765

tatgactactaaaaacaaaccaat---tgagaatttt	CRISPR spacer
tatgactactataaacaatccaatacctgggtaa---	Protospacer
*********** ****** *****   **.* *

18. spacer 2.12|1917308|34|LR134474|PILER-CR matches to NZ_CP020413 (Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

-tatgactactaaaaacaaaccaattgagaatttt	CRISPR spacer
ctgcggct-tgaaaaacaaacaaatttagaatttt	Protospacer
 *..*.** . ********** **** ********

19. spacer 2.15|1916580|33|LR134474|CRISPRCasFinder,CRT matches to NC_011774 (Bacillus cereus G9842 plasmid pG9842_140, complete sequence) position: , mismatch: 8, identity: 0.758

tctttcgcgtattcaacagcgaatttaacacca	CRISPR spacer
tttacttcatattcaacagtgtatttaacacca	Protospacer
*.* .. *.**********.* ***********

20. spacer 2.18|1916780|32|LR134474|CRISPRCasFinder,CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

-gctagttcttctggtgtttctacgatttcgaa	CRISPR spacer
tgctga-tcttctggtgtctctacgctttcatc	Protospacer
 ***.. ***********.****** ****.

21. spacer 2.26|1917309|33|LR134474|CRISPRCasFinder,CRT matches to NZ_CP020413 (Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

-atgactactaaaaacaaaccaattgagaatttt	CRISPR spacer
tgcggct-tgaaaaacaaacaaatttagaatttt	Protospacer
 ..*.** . ********** **** ********

22. spacer 2.26|1917309|33|LR134474|CRISPRCasFinder,CRT matches to NZ_LN879503 (Candidatus Protochlamydia naegleriophila strain KNic plasmid pPNK, complete sequence) position: , mismatch: 8, identity: 0.758

atgactactaaaaacaaaccaattgagaatttt	CRISPR spacer
atgactaataaaaacaaaccacttcaaacctac	Protospacer
******* ************* ** *.* .* .

23. spacer 2.12|1917308|34|LR134474|PILER-CR matches to NZ_LN879503 (Candidatus Protochlamydia naegleriophila strain KNic plasmid pPNK, complete sequence) position: , mismatch: 9, identity: 0.735

tatgactactaaaaacaaaccaattgagaatttt	CRISPR spacer
aatgactaataaaaacaaaccacttcaaacctac	Protospacer
 ******* ************* ** *.* .* .

24. spacer 2.18|1916780|32|LR134474|CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 9, identity: 0.719

gctagttcttctggtgtttctacgatttcgaa	CRISPR spacer
tttttatcttttggagtttctacgatttcggc	Protospacer
 .*   ****.*** ***************.

25. spacer 2.28|1917441|33|LR134474|CRISPRCasFinder,CRT matches to NZ_CP018869 (Sporosarcina sp. P37 plasmid pSporoP37, complete sequence) position: , mismatch: 9, identity: 0.727

gtggacataaggtttatatcgaggataaattat	CRISPR spacer
ttttccataaggtttccatcgaggataaatggg	Protospacer
 *   ********** .************* .

26. spacer 2.4|1916779|33|LR134474|PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 10, identity: 0.697

agctagttcttctggtgtttctacgatttcgaa	CRISPR spacer
ttttttatcttttggagtttctacgatttcggc	Protospacer
  .*   ****.*** ***************.

27. spacer 2.14|1917440|34|LR134474|PILER-CR matches to NZ_CP018869 (Sporosarcina sp. P37 plasmid pSporoP37, complete sequence) position: , mismatch: 10, identity: 0.706

ggtggacataaggtttatatcgaggataaattat	CRISPR spacer
cttttccataaggtttccatcgaggataaatggg	Protospacer
  *   ********** .************* .

28. spacer 2.18|1916780|32|LR134474|CRISPRCasFinder,CRT matches to MH460463 (Dickeya phage vB_DsoM_AD1, complete genome) position: , mismatch: 10, identity: 0.688

gctagttcttctggtgtttctacgatttcgaa	CRISPR spacer
ggcagttcttctggtgtttcgaagatcagatc	Protospacer
* .***************** * ***.  .

29. spacer 1.1|709337|57|LR134474|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 11, identity: 0.807

atgactcactatgaatggtgccggcgaaaggagtcgaaccctcgacctactgattac	CRISPR spacer
atcctccatgaaacatggtgccggcgataggagtcgaacccacgacctactgattac	Protospacer
**  ..**. * . ************* ************* ***************

30. spacer 1.1|709337|57|LR134474|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 11, identity: 0.807

atgactcactatgaatggtgccggcgaaaggagtcgaaccctcgacctactgattac	CRISPR spacer
atcctccatgaaacatggtgccggcgataggagtcgaacccacgacctactgattac	Protospacer
**  ..**. * . ************* ************* ***************

31. spacer 1.1|709337|57|LR134474|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 12, identity: 0.789

atgactcactatgaatggtgccggcgaaaggagtcgaaccctcgacctactgattac	CRISPR spacer
accctcgaggaaaaatggtgccggcgataggagtcgaacccacgacctactgattac	Protospacer
*.  .. *  * .************** ************* ***************

32. spacer 4.1|2941319|57|LR134474|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 12, identity: 0.789

atgactcactgtgaatggtgccggcgaaaggagtcgaaccctcgacctactgattac	CRISPR spacer
atcctccatgaaacatggtgccggcgataggagtcgaacccacgacctactgattac	Protospacer
**  ..**. . . ************* ************* ***************

33. spacer 4.1|2941319|57|LR134474|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 12, identity: 0.789

atgactcactgtgaatggtgccggcgaaaggagtcgaaccctcgacctactgattac	CRISPR spacer
atcctccatgaaacatggtgccggcgataggagtcgaacccacgacctactgattac	Protospacer
**  ..**. . . ************* ************* ***************

34. spacer 4.1|2941319|57|LR134474|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 13, identity: 0.772

atgactcactgtgaatggtgccggcgaaaggagtcgaaccctcgacctactgattac	CRISPR spacer
accctcgaggaaaaatggtgccggcgataggagtcgaacccacgacctactgattac	Protospacer
*.  .. *  . .************** ************* ***************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

382428 : 438600

Enterococcus_phage(36.36%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI05005.1\|382428_383571_-\|transposase	transposase, IS605 OrfB family	A0A288TXV8	Enterococcus_phage	1.2e-172	78.4
VEI05006.1\|384025_384715_+	Probable endopeptidase p60 precursor	D2KRB9	Lactobacillus_phage	1.5e-05	30.9
VEI05007.1\|384868_386164_-	Transposase and inactivated derivatives	A0A1S5SBP9	Streptococcus_phage	3.4e-51	33.6
VEI05008.1\|387046_388354_+	Transposase and inactivated derivatives	NA	NA	NA	NA
VEI05009.1\|388658_389867_+	Transposase and inactivated derivatives	NA	NA	NA	NA
VEI05010.1\|389852_390416_-\|transposase	transposase/IS protein	A0A059NT77	Lactococcus_phage	2.6e-24	39.2
VEI05011.1\|390412_391699_-	Transposase and inactivated derivatives	A0A2L1IVA1	Escherichia_phage	6.1e-16	27.8
VEI05012.1\|392303_393845_-\|protease	Putative serine protease HhoA precursor	NA	NA	NA	NA
VEI05013.1\|394198_394930_+	Putative N-acetylmannosaminyltransferase	NA	NA	NA	NA
VEI05014.1\|394999_395623_+	Arginine exporter protein ArgO	NA	NA	NA	NA
VEI05015.1\|395785_397081_+	Transposase and inactivated derivatives	A0A1S5SBP9	Streptococcus_phage	3.4e-51	32.7
VEI05016.1\|397353_398775_+	Predicted membrane protein	NA	NA	NA	NA
VEI05017.1\|398791_399637_+	Uncharacterised protein	NA	NA	NA	NA
VEI05018.1\|400417_403174_-	Uncharacterised protein	NA	NA	NA	NA
VEI05019.1\|404049_405387_-	H3	A0A2H4J162	uncultured_Caudovirales_phage	5.3e-15	48.2
VEI05020.1\|405614_405749_-	Uncharacterised protein	NA	NA	NA	NA
VEI05021.1\|406047_407652_+	Uncharacterised protein	NA	NA	NA	NA
VEI05022.1\|407761_408052_-	Protein of uncharacterised function (DUF2653)	NA	NA	NA	NA
VEI05023.1\|408042_408489_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEI05024.1\|408760_409156_+	Uncharacterized protein, possibly involved in aromatic compounds catabolism	NA	NA	NA	NA
VEI05025.1\|409467_410610_+\|transposase	transposase, IS605 OrfB family	A0A288TXV8	Enterococcus_phage	1.7e-171	78.1
VEI05026.1\|410992_411322_+	Uncharacterised protein	NA	NA	NA	NA
VEI05027.1\|411422_411860_-	Putative universal stress protein SAV1710	NA	NA	NA	NA
VEI05028.1\|412296_412914_-	Homoserine/homoserine lactone efflux protein	NA	NA	NA	NA
VEI05029.1\|413104_414412_-	Transposase and inactivated derivatives	NA	NA	NA	NA
VEI05030.1\|414638_416084_-	Pantothenate permease	NA	NA	NA	NA
VEI05031.1\|416083_416344_-	Predicted membrane protein	NA	NA	NA	NA
VEI05032.1\|416475_417405_+	Morphology and auto-aggregation control protein	NA	NA	NA	NA
VEI05033.1\|417416_418439_-	Uncharacterised protein	NA	NA	NA	NA
VEI05034.1\|418986_419448_+	transcription elongation factor GreA	NA	NA	NA	NA
VEI05035.1\|419412_420036_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEI05036.1\|420407_422576_+	Uncharacterised protein	NA	NA	NA	NA
VEI05037.1\|422714_423857_-\|transposase	transposase, IS605 OrfB family	A0A288TXV8	Enterococcus_phage	1.2e-172	78.4
VEI05038.1\|424035_424266_+	Uncharacterised protein	NA	NA	NA	NA
VEI05039.1\|424153_424399_-	Uncharacterised protein	NA	NA	NA	NA
VEI05040.1\|424395_425136_-	Transposase and inactivated derivatives	NA	NA	NA	NA
VEI05041.1\|425457_426666_-	Transposase and inactivated derivatives	NA	NA	NA	NA
VEI05042.1\|426905_427229_-	Transposase and inactivated derivatives	NA	NA	NA	NA
VEI05043.1\|427318_427540_-	Uncharacterised protein	NA	NA	NA	NA
VEI05044.1\|427484_428087_-	Uncharacterised protein	NA	NA	NA	NA
VEI05045.1\|428224_429181_-	Uncharacterised protein	NA	NA	NA	NA
VEI05046.1\|429193_430156_-	Uncharacterised protein	NA	NA	NA	NA
VEI05047.1\|430345_433777_-	Uncharacterised protein	NA	NA	NA	NA
VEI05048.1\|434287_436879_-	Putative endo-beta-N-acetylglucosaminidase precursor	G3MBP9	Bacillus_virus	9.1e-11	31.5
VEI05049.1\|437028_437292_-	Uncharacterised protein	NA	NA	NA	NA
VEI05050.1\|437457_438600_-\|transposase	transposase, IS605 OrfB family	A0A288TXV8	Enterococcus_phage	1.2e-172	78.4

DBSCAN-SWA_2

1238206 : 1246578

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI05832.1\|1238206_1239502_+	Adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	5.5e-17	26.0
VEI05833.1\|1239676_1240393_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	4.8e-47	41.0
VEI05834.1\|1240389_1240638_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
VEI05835.1\|1240639_1241326_+	Phosphoribosylformylglycinamidine synthase 1	NA	NA	NA	NA
VEI05836.1\|1241309_1243541_+	Phosphoribosylformylglycinamidine synthase 2	A6N228	Microbacterium_phage	5.9e-160	40.7
VEI05837.1\|1243516_1244941_+	Amidophosphoribosyltransferase precursor	A0A0M3SGR2	Mollivirus	3.5e-49	33.1
VEI05838.1\|1244953_1246009_+	Phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	6.6e-61	43.0
VEI05839.1\|1246008_1246578_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.2e-21	34.8

DBSCAN-SWA_3

1454813 : 1497381

Lactococcus_phage(40.0%)

transposase,head,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI06039.1\|1454813_1455956_-\|transposase	transposase, IS605 OrfB family	A0A288TXV8	Enterococcus_phage	5.3e-173	78.6
VEI06040.1\|1456134_1458831_+	Predicted outer membrane protein	NA	NA	NA	NA
VEI06041.1\|1458784_1459099_+	Predicted outer membrane protein	NA	NA	NA	NA
VEI06042.1\|1459326_1459644_+	Uncharacterised protein	NA	NA	NA	NA
VEI06043.1\|1459976_1460567_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.7e-56	57.8
VEI06044.1\|1460893_1461805_-	DNA-binding transcriptional repressor AcrR	NA	NA	NA	NA
VEI06045.1\|1461981_1463625_+	Spectinomycin tetracycline efflux pump	NA	NA	NA	NA
VEI06046.1\|1463746_1463977_+	Glutaredoxin-like domain (DUF836)	NA	NA	NA	NA
VEI06047.1\|1464151_1465183_+	Central glycolytic genes regulator	NA	NA	NA	NA
VEI06048.1\|1465210_1466215_+	Glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
VEI06049.1\|1466340_1467525_+	Phosphoglycerate kinase	NA	NA	NA	NA
VEI06050.1\|1467616_1468378_+	Triosephosphate isomerase	NA	NA	NA	NA
VEI06051.1\|1468370_1469897_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
VEI06052.1\|1469919_1471215_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	5.7e-163	68.3
VEI06053.1\|1471290_1472208_-	Uncharacterised protein	NA	NA	NA	NA
VEI06054.1\|1472350_1473493_-\|transposase	transposase, IS605 OrfB family	A0A288TXV8	Enterococcus_phage	4.1e-173	78.6
VEI06055.1\|1473682_1473790_-	Uncharacterised protein	NA	NA	NA	NA
VEI06056.1\|1474184_1475120_+	Glutaminase 1	NA	NA	NA	NA
VEI06057.1\|1475271_1475499_+	preprotein translocase subunit SecG	NA	NA	NA	NA
VEI06058.1\|1475569_1476316_+	Carboxylesterase	NA	NA	NA	NA
VEI06059.1\|1476338_1478729_+	Ribonuclease R	Q0GXV6	Lactococcus_phage	8.7e-93	41.6
VEI06060.1\|1478807_1479275_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	4.5e-46	61.1
VEI06061.1\|1480491_1481700_+	Transposase and inactivated derivatives	NA	NA	NA	NA
VEI06062.1\|1482209_1482500_+	uncharacterized phage protein (possible DNA packaging)	NA	NA	NA	NA
VEI06063.1\|1482486_1482816_+\|head,tail	Bacteriophage head-tail adaptor	NA	NA	NA	NA
VEI06064.1\|1482891_1483494_+	Uncharacterised protein	NA	NA	NA	NA
VEI06065.1\|1483507_1483999_+	Uncharacterised protein	NA	NA	NA	NA
VEI06066.1\|1484043_1484259_-	Uncharacterised protein	NA	NA	NA	NA
VEI06067.1\|1484407_1484794_+	Uncharacterised protein	NA	NA	NA	NA
VEI06068.1\|1485118_1486288_-	Integrase	A0A172LN96	Lactococcus_phage	6.0e-63	38.1
VEI06069.1\|1486392_1486617_-	Uncharacterised protein	NA	NA	NA	NA
VEI06070.1\|1486609_1486828_-	Uncharacterised protein	NA	NA	NA	NA
VEI06071.1\|1487032_1488544_+	Type III restriction enzyme, res subunit	NA	NA	NA	NA
VEI06072.1\|1488649_1490491_+	KAP family P-loop domain	NA	NA	NA	NA
VEI06073.1\|1490588_1490816_+	Uncharacterised protein	NA	NA	NA	NA
VEI06074.1\|1490954_1492409_+	Transposase and inactivated derivatives	NA	NA	NA	NA
VEI06075.1\|1492405_1493131_+	Chromosomal replication initiator protein DnaA	A0A059NT77	Lactococcus_phage	2.1e-34	37.7
VEI06076.1\|1493157_1493673_+	Uncharacterised protein	NA	NA	NA	NA
VEI06077.1\|1494327_1495611_+	Transposase and inactivated derivatives	A0A059NT83	Lactococcus_phage	2.6e-43	31.3
VEI06078.1\|1495868_1497011_+\|transposase	transposase, IS605 OrfB family	A0A288TXV8	Enterococcus_phage	4.1e-173	78.6
VEI06079.1\|1497171_1497381_+\|transposase	transposase/IS protein	NA	NA	NA	NA

DBSCAN-SWA_4

1873224 : 1881437

Lactococcus_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI06618.1\|1873224_1873983_-\|transposase	transposase/IS protein	A0A059NT77	Lactococcus_phage	1.4e-52	44.6
VEI06620.1\|1873979_1875266_-	Transposase and inactivated derivatives	A0A2L1IVA1	Escherichia_phage	6.1e-16	27.8
VEI06622.1\|1875395_1875872_+	Uncharacterised protein	NA	NA	NA	NA
VEI06624.1\|1875932_1877144_-	Uncharacterized conserved protein	A0A1S5SAB0	Streptococcus_phage	2.1e-42	44.4
VEI06626.1\|1877245_1877581_-	HTH-type transcriptional regulator immR	A0A139ZPI6	Marinitoga_camini_virus	2.2e-10	41.2
VEI06627.1\|1877797_1877977_+	Uncharacterised protein	NA	NA	NA	NA
VEI06628.1\|1877964_1878741_+	phage replisome organizer, putative, N-terminal region	A0A059T619	Staphylococcus_phage	4.1e-36	52.1
VEI06630.1\|1878685_1879507_+	DNA replication protein	A0A2D1GQF9	Lysinibacillus_phage	1.5e-39	39.5
VEI06631.1\|1879510_1879702_+	Uncharacterised protein	NA	NA	NA	NA
VEI06633.1\|1879736_1879952_+	Uncharacterised protein	NA	NA	NA	NA
VEI06635.1\|1880420_1881437_+	Alcohol dehydrogenase	A0A2K9L339	Tupanvirus	3.9e-34	29.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134474

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection