CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134475	Klebsiella aerogenes strain NCTC9735 genome assembly, chromosome: 1	3 crisprs	cas3,csa3,RT,DEDDh,DinG,WYL	1	2	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134475_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134475_1

98326-98445

Unclear

Consensus_repeat	Method
GTCCCTGCTGGCGCTACGCTTAGCAGGGCTACAGTTCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of LR134475_1

>merge|LR134475|1|98326-98445|CRISPRCasFinder
GTCCCTGCTGGCGCTACGCTTAGCAGGGCTACAGTTCTGCGCCGTCCGGTAGCCCGGGTAAGGCGACAGCCGCTACCCGGGAGTCCCTGCTGGCGCTACGCTTAGCAGGGCTACAGTTCT

>LR134475|1|1|98326-98445|CRISPRCasFinder
GTCCCTGCTGGCGCTACGCTTAGCAGGGCTACAGTTCT	GCGCCGTCCGGTAGCCCGGGTAAGGCGACAGCCGCTACCCGGGA
GTCCCTGCTGGCGCTACGCTTAGCAGGGCTACAGTTCT

Protein	Signature genes	Signature genes Name	Protein_function
LR134475.1\|VEI06458.1\|86097_87477_-\|Maltose-6'-phosphate-glucosidase	unknown	unknown	gnl\|CDD\|133432
LR134475.1\|VEI06479.1\|99398_100703_+\|Di-and-tricarboxylate-transporters	unknown	unknown	gnl\|CDD\|273267
LR134475.1\|VEI06475.1\|97328_98318_+\|sulfate-binding-protein	unknown	unknown	gnl\|CDD\|182700
LR134475.1\|VEI06481.1\|100800_101568_-\|triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
LR134475.1\|VEI06477.1\|98569_99334_+\|CDP-diacylglycerol-pyrophosphatase	unknown	unknown	gnl\|CDD\|235485
LR134475.1\|VEI06487.1\|102817_103564_-\|Ferredoxin--NADP(+)-reductase	unknown	unknown	gnl\|CDD\|182844
LR134475.1\|VEI06489.1\|103659_104670_-\|Fructose-1,6-bisphosphatase-class-2	unknown	unknown	gnl\|CDD\|224411
LR134475.1\|VEI06483.1\|101676_102276_-\|Putative-uncharacterized-protein-YiiQ	unknown	unknown	gnl\|CDD\|369310
LR134475.1\|VEI06471.1\|95642_96491_-\|glycerol-uptake-facilitator-protein	unknown	unknown	gnl\|CDD\|238204
LR134475.1\|VEI06473.1\|96935_97175_+\|cell-division-protein-ZapB	unknown	unknown	gnl\|CDD\|185320
LR134475.1\|VEI06485.1\|102388_102817_+\|membrane-protein	unknown	unknown	gnl\|CDD\|225694
LR134475.1\|VEI06491.1\|104721_106803_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
LR134475.1\|VEI06466.1\|92792_93995_+\|Sodium/glutamate-symport-protein	unknown	unknown	gnl\|CDD\|129314
LR134475.1\|VEI06493.1\|106808_107498_-\|tRNA-(Guanosine18-2'-O-)-methyltransferase	unknown	unknown	gnl\|CDD\|236837
LR134475.1\|VEI06495.1\|107594_109715_-\|GTP-pyrophosphokinase,-(p)ppGpp-synthetase-II-/-Guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236843
LR134475.1\|VEI06456.1\|85289_86012_+\|transcriptional-regulator,-RpiR-family	unknown	unknown	gnl\|CDD\|224651
LR134475.1\|VEI06460.1\|87490_89050_-\|PTS-system,-maltose-and-glucose-specific-IIC-component-/-PTS-system,-maltose-and-glucose-specific-IIB-component	unknown	unknown	gnl\|CDD\|273925
LR134475.1\|VEI06464.1\|91113_92505_-\|Xanthine-permease-XanP	unknown	unknown	gnl\|CDD\|225142
LR134475.1\|VEI06462.1\|89242_90952_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957
LR134475.1\|VEI06469.1\|94109_95621_-\|Glycerol-kinase	unknown	unknown	gnl\|CDD\|234594

Protein	Function_ID	Function_description	E-value
LR134475.1\|VEI06458.1\|86097_87477_-\|Maltose-6'-phosphate-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	7.17193e-141
LR134475.1\|VEI06479.1\|99398_100703_+\|Di-and-tricarboxylate-transporters	gnl\|CDD\|273267	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter. The Divalent Anion:Na+ Symporter (DASS) Family (TC 2.A.47) Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+. [Transport and binding proteins, Anions, Transport and binding proteins, Cations and iron carrying compounds].	5.76641e-25
LR134475.1\|VEI06475.1\|97328_98318_+\|sulfate-binding-protein	gnl\|CDD\|182700	PRK10752, PRK10752, sulfate ABC transporter substrate-binding protein.	0
LR134475.1\|VEI06481.1\|100800_101568_-\|triosephosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	3.18645e-141
LR134475.1\|VEI06477.1\|98569_99334_+\|CDP-diacylglycerol-pyrophosphatase	gnl\|CDD\|235485	PRK05471, PRK05471, CDP-diacylglycerol pyrophosphatase; Provisional.	2.08397e-157
LR134475.1\|VEI06487.1\|102817_103564_-\|Ferredoxin--NADP(+)-reductase	gnl\|CDD\|182844	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional.	0
LR134475.1\|VEI06489.1\|103659_104670_-\|Fructose-1,6-bisphosphatase-class-2	gnl\|CDD\|224411	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism].	0
LR134475.1\|VEI06483.1\|101676_102276_-\|Putative-uncharacterized-protein-YiiQ	gnl\|CDD\|369310	pfam07305, DUF1454, Protein of unknown function (DUF1454). This family consists of several Enterobacterial sequences of around 200 residues in length which are often known as YiiQ proteins. The function of this family is unknown.	2.18497e-93
LR134475.1\|VEI06471.1\|95642_96491_-\|glycerol-uptake-facilitator-protein	gnl\|CDD\|238204	cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.	3.43558e-81
LR134475.1\|VEI06473.1\|96935_97175_+\|cell-division-protein-ZapB	gnl\|CDD\|185320	PRK15422, PRK15422, septal ring assembly protein ZapB; Provisional.	6.12933e-20
LR134475.1\|VEI06485.1\|102388_102817_+\|membrane-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	2.30356e-25
LR134475.1\|VEI06491.1\|104721_106803_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
LR134475.1\|VEI06466.1\|92792_93995_+\|Sodium/glutamate-symport-protein	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	0
LR134475.1\|VEI06493.1\|106808_107498_-\|tRNA-(Guanosine18-2'-O-)-methyltransferase	gnl\|CDD\|236837	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional.	7.4309e-174
LR134475.1\|VEI06495.1\|107594_109715_-\|GTP-pyrophosphokinase,-(p)ppGpp-synthetase-II-/-Guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|236843	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase.	0
LR134475.1\|VEI06456.1\|85289_86012_+\|transcriptional-regulator,-RpiR-family	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.27759e-20
LR134475.1\|VEI06460.1\|87490_89050_-\|PTS-system,-maltose-and-glucose-specific-IIC-component-/-PTS-system,-maltose-and-glucose-specific-IIB-component	gnl\|CDD\|273925	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.55398e-104
LR134475.1\|VEI06464.1\|91113_92505_-\|Xanthine-permease-XanP	gnl\|CDD\|225142	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism].	5.27444e-143
LR134475.1\|VEI06462.1\|89242_90952_-\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	3.93631e-24
LR134475.1\|VEI06469.1\|94109_95621_-\|Glycerol-kinase	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0

>LR134475.1|VEI06475.1|97328_98318_+|sulfate-binding-protein
MNKWGVGLTLLLASASVLAKDYQLLNVSYDPTRELYEQYNKAFSAHWKQETGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKNWLKRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHQNHGDQAKAQEFVKALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLATKELGKDKFEIVTPSESILAEPTVSVVDKVVDKKGTRQVAEAYLKYLYSPEGQEIAAKNFYRPRDPDVAKKYANEFPKLKLFTIDQEFGGWTKAQKEHFSNGGTFDQISQR
>LR134475.1|VEI06473.1|96935_97175_+|cell-division-protein-ZapB
MSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNTTLAQEVQSAQHGREELERENSQLREQQQGWQDRLQALLGRMEEV
>LR134475.1|VEI06471.1|95642_96491_-|glycerol-uptake-facilitator-protein
MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISIIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDGRKVVPFIISQFAGAFCAAALVYGLYYNLFFDFEHTHNMVRGSVESLELAGIFSTYPNPHINFVQAFAVEMVITAILMGVILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDIGPKAFAWLAGWGNVAFTGGKDIPYFLVPLCAPVVGAALGAFSYRKFIGRHLPCDTCVEEEKESASSASQQKASL
>LR134475.1|VEI06469.1|94109_95621_-|Glycerol-kinase
MTEKKYIVALDQGTTSSRAVVMDHDANIVSVSQREFEQIYPKPGWVEHDPMEIWASQSSTLVEVLAKADINSDEIAAIGITNQRETAIVWERETGKPIYNAIVWQCRRTADICEQLKRDGMEEYIRKATGLVVDPYFSGTKVKWILDHVEGARERAKRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHELDWDDKMLDALDIPRAMLPEVRKSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVTSTHGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAFDSEYFATKVKDTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNFRYSGWKKAVKRALAWEEHDEA
>LR134475.1|VEI06466.1|92792_93995_+|Sodium/glutamate-symport-protein
MLHLDTLSTLVAATMVLLLGRKLVQNVPFLKKYTIPEPVAGGLLVALALLVLKKSMDIEIDFDMSLKDPLMLAFFATIGLNANLASLRAGGKVLGTFLIVVVGLLLLQNALGIGMAKLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFVERYGFANATEVAMACATFGLVLGGLIGGPVARYLVKHSSSPEGTPDDQLAPTAFEKPDMGRMITSLVLIESIALIAICLTVGKVVAQLLAGTVFELPTFVCVLFIGVILSNGLALAGLYRVFDRAVSVLGNVSLSLFLAMALMSLKLWELASLALPMIIILAVQAVAMALYAVFVTYRMMGKNYDAAVLAAGHCGFGLGATPTAIANMQAITDRFGPSHMAFLVVPMVGAFFIDIVNALVIKLYLLLPIFG
>LR134475.1|VEI06464.1|91113_92505_-|Xanthine-permease-XanP
MSVTTAESENAQPVAHKPPSELIYRLEDRPPLPQTLFAAFQHLLAMFVAVITPALLICQALGLPAEDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQGTSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVLSRVLHLARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMADHTFGAPKNLLLAGIVLALIIILNRQRNPYLRIASLVIAMAAGYLAAWFLDMLPANTAPTNSSLITIPTPLYYGLGIDWSLLLPLMLVFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPDWLKNLLSSGIAAGGITAIVLNLIFPPEKN
>LR134475.1|VEI06462.1|89242_90952_-|AsmA-family-protein
MKFLGKLILWLLIALLVVIVAAYFALQTRWGARQASSWLSESTGWKIAFDKMAHDFSSPLHLQLQNVTFGRDGKPPTLVARTVDIGFSTRQFSDPLHADEIVLSDGTLNLSPASASMPFAADRLQLRDMAFNSPDSEWNLSAQRVTGGVMPWQPEAGDVLGRKAQIQMSAGSMNINGIEASNVLIQGAMDNGEVTLNTLGADIARGTLTGNAKRRADGSWLVDNLRLNEIRLQSAKPLNEFLAPLTSVPSLQIGRLDVTDARLQGPGWAVTDLDLNLRNLTLSHNGWQSDDGTLSMNASEFIYGSLNFLDPIVNAEFSPQGIALRQFSSRWEGGMVRTSGNWLRAGNALVLDDAVFAGLEYTLPSNWKQLWMEPMPGWLQSLTLKKFSASRNLIIDIDPAFPWQITALDGYGGELQLVKDGQWGVWNGSATLNAAAATFNRIDVRRPSLKLNANASTVNISELSAFTERGILQATAAVSQLPQRQVNLSLNGRGVPLNILQAWGWPALPISGDGNFQLTANGSVQANAPLKPSVNGQLSATNMDKQQAAQVMRNGEVSNAPAASVPVTP
>LR134475.1|VEI06460.1|87490_89050_-|PTS-system,-maltose-and-glucose-specific-IIC-component-/-PTS-system,-maltose-and-glucose-specific-IIB-component
MSVIRQRILENMQKFSRAMIGAVLFLPVIGLILALSSVLTNPTLIAETSFLHQLGQLLGDTFWPLFGNLGLLFCVGISYGLAKDKKTEVALVSVMCFIMFLGANHSWLEHTHAVAEKINGEYYGTGQTQLLGFVVVDMGVFLGIILGCTIAWVHNKVSNIELPGALSMYGGAKLTLVAMTPVIICYAIAFTWIWPFMTHGISALTGFMKNAGVAGVFVYGFFEKFLIPTGLHHFVWSPFQLTQIGGTLNVDGQVVSGTQAIFLAYMRHPDLTPVMNDALRFSQQGMTTIFGLAGASLAFYHTAKPEKKAMAKAILLPAIITSMLTGITEPIEFTFLFVSPLLWVIHATLTAASQAICDIFTVRPWGASGLIEFLIYNLPLPVSLTRWPGYVLIGIGQFIVYYAIFRTLVVKLNLKTPGREDDDNVKLYSKADYRKKVSGPQSMTDEIINGLGGKANIISVDNCFTRLRVVVHNMTLVDDELLKSTGANGVVRNRNEVQVIYGVKVGQVRSRVDSWLAEN
>LR134475.1|VEI06458.1|86097_87477_-|Maltose-6'-phosphate-glucosidase
MKLTVLGGGGVRSAFLAKSLAYNAHRIGLTEVVFQDSSAENLSLFGEIARYVFNTIRPDIHFTTTSDPVAALQGTHYVITTLRVGGDESRIRDERIALEHNTLGQETTGAGGFAMAMRSIPAILRYCRLIEEHADKDAILFNFTNPSGLVTEAIIKSGFKRRVYGICDAPSELIRELPEILGCDPHDLSVECYGLNHFSWFTHFTVRGEEVTAQLVANPDLYRKTAMQYFSPELVKLCDNQLLNEYLYYYYYREVALRAIQQAPETRGEQIARINHDMRQELSGVDVKAEPQAAFTIWMKHYLRRENSYMQNESQQEKFHTREPLTLRQFIEEPDTGGYAGVALDILEAVNSTTTKRIVVSLQNNGTLDFLRPDDVIEISCDLSKEGLKPVTPVNVPTAQKNMIASVKEYERLAVAAILQQDKSLALQALMAHPLVGSYSLAKKLVEAYLDDEQFAGWR
>LR134475.1|VEI06456.1|85289_86012_+|transcriptional-regulator,-RpiR-family
MDLENIFRDVKLSKTEMTVLRFIQNDPQLCIREGIRTVAERCYSNPSSLVRLAKKLKFSGWLELVYFIKFNITMPKLDVTNDIDYMSIQPAEALTPLLAGLEQQRILIHGSGFSQLIAQYIYNKFLVTGVNASLALWPDYEILEQKNAARFDSIWIISKSGRSSSALNWVKALEGKEINLVCFTGDYQSPLAQAANTAFIIHDPQKFDDDIYWSNPFFGYCILGFERLLKMWFTSVPSKR
>LR134475.1|VEI06477.1|98569_99334_+|CDP-diacylglycerol-pyrophosphatase
MRRVRYLLWVLLVVILAALAGGYYWLHSGNPNALRHIVLQQCVPNQQQYQNPSPCAEVNLKGGYVLFKDRNGPLQYLLMPTYRINGTESPLLLDPLTPNFFWQAWQGREIMSQRRGAPIDDNAVSLAINSRSGRTQNHFHIHISCLRPDVRAQLDNDAATISSRWLPLPGGLQGHEYLARRVTEAELAQRSPFLMLAEEVPEAREHMGRYALAMARQSDGSLVLLATERNLLTLNRASAEEIQDHSCAILNANH
>LR134475.1|VEI06479.1|99398_100703_+|Di-and-tricarboxylate-transporters
MSLWLTHPLFLPSLIVGITIVLWATSLLPEFITALLFFAAAMMIKIAPPEVIFGGFASSAFWLVFSGFVLGIAIRKTGLADRAAQALSARLTDSWPRMVGSVVLLSYALAFVMPSNMGRIALLMPIVAAMARRAGIADGTRGWYGLALAVGFGTFQLSATILPANVPNLVMSGAAEGSYGIHLNYVPYLLLHTPVLGWLKGAVLVALICWLFPGKPHPPRELAPQAPMSRDEKRLAWLLAVVLTLWVTESWHGVGPAWTGLAAAVVTLLPRVGFISGEEFASGVNMRTCIYVAGILGLAITVTQTGIGGAVGNALLQVMPLDKDNPFTSFLALTGITSALNFIMTANGVPALYTTFAQSFADATGFPLLSVIMIQVLGYSTPLLPYQASPIVVAMGLGKVPAKAGMLLCLALAAVSYLILLPLDYAWYQLLGKL
>LR134475.1|VEI06481.1|100800_101568_-|triosephosphate-isomerase
MRHPLVMGNWKLNGSRHMVNELVANLRTELAGVSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAKKA
>LR134475.1|VEI06483.1|101676_102276_-|Putative-uncharacterized-protein-YiiQ
MKKWAILSLIGLTALSVGPMALSAETESAATAPYLLPSAPIFDVSISEFREKFNADNPKLPLNEFRSIASSRDKANLTRAATKINENLYASTALERGTLKIKSMQITWLPIQGPEQKAAKAKAQEYMSAILRAFVPTLSPLQSQQKLQKLLTAGKGKRYYTETEGAVRYVVADHGEKGLTFAIEPIKLALSETLEDNNK
>LR134475.1|VEI06485.1|102388_102817_+|membrane-protein
MTLQQWLFSIKGRIGRRDFWIWIVIWVLTMSALFTLAGSNLLSLQTAAFILVCLFWPTAAVVVKRLHDRGRSGLWALLMILAWMLLAGNWAMLPQVWQWGVGRFVPTLIIVMMLIDLGAFVGTQGENKFGKETQDVRWKADA
>LR134475.1|VEI06487.1|102817_103564_-|Ferredoxin--NADP(+)-reductase
MANWVTGKVVKVQNWTDALFSLTIHAPVEPFTAGQFAKLGLDVDGERVQRAYSYVNAPSNPDLEFYLVTVPEGKLSPRLAALKPGDDVQIVSEAAGFFVLEEVPDCDTLWMLATGTAIGPYLSILEEGKDLDRFKNLVLVHAARYAADLSYLPQMRELEQRYAGKLRIQTVVSRETAEGSLTGRVPFLIETGALEEAVGLPMTADTSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPGHMTAEHYW
>LR134475.1|VEI06489.1|103659_104670_-|Fructose-1,6-bisphosphatase-class-2
MKRELAIEFSRVTEAAALAGYKWLGRGDKNTADGAAVNAMRIMLNLVNIDGTIVIGEGEIDEAPMLYIGEKVGTGKGDAVDIAVDPIEGTRMTAMGQANALAVMAVGDKGCFLNAPDMYMEKLIVGPGAKGAIDLNLPLEENLRNIARALNKPLGDLTVTVLAKPRHDAVIAQLQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSAAVIRALDGDMQGRLLARHHVKGDSEENRRIGENELARCKTMGIEAGKVLRLDEMARSDNVIFSATGITKGDLLDGITRKGNMATTETLLIRGKSRTIRRIQSIHYLDRKDPDVQQHIL
>LR134475.1|VEI06491.1|104721_106803_-|ATP-dependent-DNA-helicase-RecG
MSGRLLDAVPLNSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHLYQIGELLPGVYATVEGEVLNSNITFGGRRMMTCQISDGSGILTMRFFNFNAAMKNSLATGRRVLAYGEAKRGKFGAEMIHPEYRVQGDMSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLETCAISELLPPELAQGMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEELLAHNLSMLALRAGAQRYHALPLSANDTLKTQLLASLPFKPTGAQARVTAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRSWFAPLGIEVGWLAGKQKGKARQAQQEAIANGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRNACTQEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPDVQRIARHIHERYPLQAQALIERWMPETERYSNA
>LR134475.1|VEI06493.1|106808_107498_-|tRNA-(Guanosine18-2'-O-)-methyltransferase
MNSQRYARICEMLARRQPDLTVCMEQVHKPHNVSAVIRTADAIGVHEVHAIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVSHLKGRGMQILATHLSDKAIDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSMLPPEEQQRLLFEGGYPVLARVARQKGLPYPHVNEQGEVEADASWWATMQAAR
>LR134475.1|VEI06495.1|107594_109715_-|GTP-pyrophosphokinase,-(p)ppGpp-synthetase-II-/-Guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MYLFESLNQLIQNYLPEEQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVHDPDICYRVLGQMHSLYKPRPGRFKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGGESSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLAEIPPENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQQGEASAAPVPANASNHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQEFIAEIKVDMFNHQGALANLTAAINTASSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN

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Crispr_ID: LR134475_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134475_2

3088482-3088573

Orphan

Consensus_repeat	Method
CGCGCTTCGCTTAGCGAGGCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134475_2

>merge|LR134475|2|3088482-3088573|CRISPRCasFinder
CGCGCTTCGCTTAGCGAGGCTACACACTCTCGCACTCTCTCAGCCACCTGCACTGCCATCTCCTCGCTCGCGCTTCGCTTAGCGAGGCTACA

>LR134475|2|2|3088482-3088573|CRISPRCasFinder
CGCGCTTCGCTTAGCGAGGCTACA	CACTCTCGCACTCTCTCAGCCACCTGCACTGCCATCTCCTCGCT
CGCGCTTCGCTTAGCGAGGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
LR134475.1\|VEI10441.1\|3086026_3086533_+\|SEC-C-motif-domain-containing-protein	unknown	unknown	gnl\|CDD\|234966
LR134475.1\|VEI10435.1\|3078296_3080975_+\|aldehyde-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
LR134475.1\|VEI10433.1\|3074788_3076420_-\|periplasmic-oligopeptide-binding-protein	unknown	unknown	gnl\|CDD\|185059
LR134475.1\|VEI10437.1\|3082328_3082736_+\|global-DNA-binding-transcriptional-dual-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858
LR134475.1\|VEI10440.1\|3085064_3085964_-\|UPF0028-protein-YchK	unknown	unknown	gnl\|CDD\|182352
LR134475.1\|VEI10436.1\|3081158_3081689_-\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
LR134475.1\|VEI10444.1\|3089177_3090074_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	unknown	unknown	gnl\|CDD\|273359
LR134475.1\|VEI10448.1\|3092986_3096730_-\|respiratory-nitrate-reductase-subunit-alpha-apoprotein	unknown	unknown	gnl\|CDD\|227346
LR134475.1\|VEI10434.1\|3077170_3077818_-\|multiple-antibiotic-resistance-(MarC)-like-protein	unknown	unknown	gnl\|CDD\|236850
LR134475.1\|VEI10445.1\|3090070_3090748_-\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
LR134475.1\|VEI10446.1\|3090747_3091458_-\|Respiratory-nitrate-reductase-delta-chain	unknown	unknown	gnl\|CDD\|185014
LR134475.1\|VEI10447.1\|3091454_3092990_-\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
LR134475.1\|VEI10442.1\|3086577_3087420_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
LR134475.1\|VEI10449.1\|3097116_3098505_-\|Nitrate/nitrite-transporter	unknown	unknown	gnl\|CDD\|184994
LR134475.1\|VEI10438.1\|3082861_3083764_-\|UTP-glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|184021
LR134475.1\|VEI10452.1\|3101252_3102629_-\|Putative-invasin	unknown	unknown	gnl\|CDD\|236661
LR134475.1\|VEI10439.1\|3083961_3084975_-\|Hnr-protein	unknown	unknown	gnl\|CDD\|182652
LR134475.1\|VEI10450.1\|3098816_3100595_+\|Nitrate/nitrite-sensor-protein	unknown	unknown	gnl\|CDD\|182581
LR134475.1\|VEI10451.1\|3100605_3101256_+\|nitrate/nitrite-response-regulator-protein-narL	unknown	unknown	gnl\|CDD\|182619
LR134475.1\|VEI10443.1\|3088626_3089070_-\|Leucine-responsive-regulatory-protein,-regulator-for-leucine-(or-lrp)-regulon-and-high-affinity-branched-chain-amino-acid-transport-system	unknown	unknown	gnl\|CDD\|224439

Protein	Function_ID	Function_description	E-value
LR134475.1\|VEI10441.1\|3086026_3086533_+\|SEC-C-motif-domain-containing-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	2.17027e-105
LR134475.1\|VEI10435.1\|3078296_3080975_+\|aldehyde-alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
LR134475.1\|VEI10433.1\|3074788_3076420_-\|periplasmic-oligopeptide-binding-protein	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
LR134475.1\|VEI10437.1\|3082328_3082736_+\|global-DNA-binding-transcriptional-dual-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	4.61486e-79
LR134475.1\|VEI10440.1\|3085064_3085964_-\|UPF0028-protein-YchK	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
LR134475.1\|VEI10436.1\|3081158_3081689_-\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	2.58373e-92
LR134475.1\|VEI10444.1\|3089177_3090074_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.14894e-16
LR134475.1\|VEI10448.1\|3092986_3096730_-\|respiratory-nitrate-reductase-subunit-alpha-apoprotein	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
LR134475.1\|VEI10434.1\|3077170_3077818_-\|multiple-antibiotic-resistance-(MarC)-like-protein	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	1.54416e-133
LR134475.1\|VEI10445.1\|3090070_3090748_-\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	1.25701e-130
LR134475.1\|VEI10446.1\|3090747_3091458_-\|Respiratory-nitrate-reductase-delta-chain	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	2.10188e-83
LR134475.1\|VEI10447.1\|3091454_3092990_-\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
LR134475.1\|VEI10442.1\|3086577_3087420_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	1.89921e-175
LR134475.1\|VEI10449.1\|3097116_3098505_-\|Nitrate/nitrite-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
LR134475.1\|VEI10438.1\|3082861_3083764_-\|UTP-glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
LR134475.1\|VEI10452.1\|3101252_3102629_-\|Putative-invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
LR134475.1\|VEI10439.1\|3083961_3084975_-\|Hnr-protein	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
LR134475.1\|VEI10450.1\|3098816_3100595_+\|Nitrate/nitrite-sensor-protein	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
LR134475.1\|VEI10451.1\|3100605_3101256_+\|nitrate/nitrite-response-regulator-protein-narL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.43471e-140
LR134475.1\|VEI10443.1\|3088626_3089070_-\|Leucine-responsive-regulatory-protein,-regulator-for-leucine-(or-lrp)-regulon-and-high-affinity-branched-chain-amino-acid-transport-system	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.4783e-31

>LR134475.1|VEI10442.1|3086577_3087420_+|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDATLLADLDSALPEGSIRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVDIAAVIGNHETLRTLVERFDIPFELVSHEGLSREEHDQRMGDAIAAHDPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>LR134475.1|VEI10441.1|3086026_3086533_+|SEC-C-motif-domain-containing-protein
MHFGALAPSFFSMEAILSQLCPCGSALEYSSCCQRYLTGGQLAPSPSQLMRSRYSAFVMKDVDYLIKTWHPHCEAPRFRADIEKGFANTQWLGLTVFATDNGRSSDEGFVSFIARFTEDNRPGAIIERSRFLKENGQWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ
>LR134475.1|VEI10440.1|3085064_3085964_-|UPF0028-protein-YchK
MRKLKIGLALGAGAARGWSHIGVIKALHRAGVDVDVVAGCSIGALVGAAYACNRLPALEKWVSSFSNWDVLRLMDLSWRRGGLLRGERVFNQYRQIMPVAQIEACERRFAAVATNLSTGRELWFTEGDLHMAVRASCSMPGLMSPVMHNGYWLVDGAVVNPVPVSLTRALGADIVIAVDLQHDAHLMQQDLLSIESPRPEPIEELSWHSRLRSRLGRMSSRRATITPTAMEIMSTSIQVLENRLKRNRMAGDPPDILLQPFCPQISTLDFHRAGEAMAAGQLAVEKKMDELLPLVRTSA
>LR134475.1|VEI10439.1|3083961_3084975_-|Hnr-protein
MTQPLAGKQILIVEDEPVFRSLLDSWLTSLGATTRQAEDGIEALQQIAISKPDLMICDISMPRMNGLELVEQVRNQGEQLPILMISATENMADIAKALRLGVQDVLLKPVKDFNRLRETVYACLYPTMFSSRVEEEERLFEDWDALVSDPLAASRLLQELQPPVQQEISHCRINYRQLISADKPGLVLDIAPLSENDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQGQRLPEMGALLKQVNQLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNGTLNTGEHKIQISNGVPLGTLGNAYLNQISQRCTSWQCQIWGAGGRLRLMLSAD
>LR134475.1|VEI10438.1|3082861_3083764_-|UTP-glucose-1-phosphate-uridylyltransferase
MAALNSKVRKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLTRDNLAEMIVRFDETGASQIMVEPVEDVTAYGVVDCKGESLQPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGVRHKTLGEDFKAWLAQAVAK
>LR134475.1|VEI10437.1|3082328_3082736_+|global-DNA-binding-transcriptional-dual-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEIEERTRKLQQYREMLIADGIDPNELLSTMAAVKAGTKTKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKTLDDFLL
>LR134475.1|VEI10436.1|3081158_3081689_-|thymidine-kinase
MRTVVYTAEIDDRFGSGKVSSRIGLSSPARLYNPQTSLYADIASEHARQPIHCVLVDESQFLTREQVHELSEVVDELDIPVLCYGLRTDFRGELFSGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQEGRPYNEGEQVVIGGNERYVSVCRKHYKEALSTGSLTQVQSKLRHGE
>LR134475.1|VEI10435.1|3078296_3080975_+|aldehyde-alcohol-dehydrogenase
MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIIEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKAVQDIILKNGALNAAIVGQPAAKIAELAGFTVPATTKILIGEVTDVDESEPFAHEKLSPTLAMYRAKDFEDAVNKAEKLVAMGGIGHTSCLYTDQDNQPARVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLISNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESLKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLIAELKQILLDTYYGRDFVEGEAAAVKKEAAPAKAEKKAKKSA
>LR134475.1|VEI10434.1|3077170_3077818_-|multiple-antibiotic-resistance-(MarC)-like-protein
MTLPLFDFAIYFKFFIGLFALVNPVGIIPVFISMTSYQTALVRNKTNLTANLSVGIILLTSLFLGDGILQIFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSIAHLIGFSIAIALFAACCWGIFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKALFPGLTA
>LR134475.1|VEI10433.1|3074788_3076420_-|periplasmic-oligopeptide-binding-protein
MTIITKKSLVAAGILSALITANVAMAADVPAGVQLADKQTLVRNNGAEVQSLDPHKIEGVPESNVNRDLFEGLVIGDLNGHPVPGVAESWDNKDFKVWTFHIRKDAKWSDGSPVTAQDFVYSWQRLADPKTASPYASYLQYGHVANVDEIIAGKKPATDLGVKAIDDKTFEVTLSEPVPYFYKLLVHPSVSPVPKAAIEKYGEKWTQPANIVTNGAYKLKDWVVNERIVLERNTNYWDNAKTVINQVTYMPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPKEVHVDPYLCTYYYEINNQKAPFTDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTPPYTDGMKLVEPEWFKWSQEKRNEEAKKLLAEAGYTADKPLTFNLLYNTSDLHKKLAIAVASIWKKNLGANVKLENQEWKTFLDSRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYKSPAFDKIIGDTLQVTDEAKRAELYAQSEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPLDNIYVKNLYIIKH
>LR134475.1|VEI10443.1|3088626_3089070_-|Leucine-responsive-regulatory-protein,-regulator-for-leucine-(or-lrp)-regulon-and-high-affinity-branched-chain-amino-acid-transport-system
MEYVIDEIDRAILTCLTQDARVSLKVLSAQVGLTSPSTAERVKRLEEKGVIEGYGARVNLAALGYSLQALVRVRPLPGLLQKVDKYIQAMPECIESDKVTGEDCFVMRLVVRDIAQLDTILDGLAEYAQCNTSVVKSSPVKRRLPPL
>LR134475.1|VEI10444.1|3089177_3090074_+|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily
MQLSRGVWQMSLAMIISGSIGAFVLLSGLPVIDVVFWRCLIGAVTLLLFILLSRQPFSRLTRLTLALAVLGGVALVINWLLLFAAYSRVSIGMATVVYNTQPFMLVLLSMILGERVSAVKWGWLLLAFGGVVILLSSELTPGHGDNLVTGIALALCAAFFYALTAIIARKLQPLPAQHIAFIQVIVGTVMLLPLVHAPEFNGHFPWRYLLILGIVHTGIMYQLLYSAIQKLPTPVTGSLSFIYPLMAIVVDYLVFHHALTPLQLAGGVLILFAAAGNNLDWGEKKPRHGGVSQPSRMN
>LR134475.1|VEI10445.1|3090070_3090748_-|respiratory-nitrate-reductase-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPIDVKQKMAMFAGGACGVMTLVGGLLLLKRRLLSPRVRATTTTADILILSLLMVQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFVFRVHLVLGMTLFLLFPFSRLVHIWSAPVEYLTRKYQIVRARR
>LR134475.1|VEI10446.1|3090747_3091458_-|Respiratory-nitrate-reductase-delta-chain
MIELVIVSRLLEYPDAALWQHQQEMFEALASSEKLAKEDAQALGVFLRDLVAQDPLDAQSAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYERHGLLLDSHELPDHLPLYLEYLAQLPEEEALGGLRDVAPILGLLSARLQQRESRYAVLFELLLKLANTQVDSQKVAEKIADEARDDTPQALDAVWEEEQVKFFADQGCGESDISAHQRRFAGAVAPQYLNISNGGQH
>LR134475.1|VEI10447.1|3091454_3092990_-|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDFDYQNLHNAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFENMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIESGMPTVCSETCVGRIRYLGVLLYDADAIENAASTENEKDLYQRQLDVFLDPNDPKVIEQALKDGVPQGVIEAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHFKRAETVDGVVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHREQARDAFPEKSGCGFTFGDGCHGSDSEFNLFNSRRIDAIDVTSKTEPHA
>LR134475.1|VEI10448.1|3092986_3096730_-|respiratory-nitrate-reductase-subunit-alpha-apoprotein
MSKFLDRFRYFKQKGETFADGHGQLLKTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKVQHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWKEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDKPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVDSLGQEQNPEWKTVAFDEKGEMTVPNGSLGFRWGDKGKWNLEQRDGKTGEEIELRLSLLGSHDDIANVGFPYFGGEGSEHFNKVDLENILLHKLPVKRLQMADGSTALVTTVYDLTMANYGLERGLNDENCATSYDDVKAYTPAWAEKITGVSRAHIIRTAREFADNADKTHGRSMIIVGAGLNHWFHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFGLDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGVNPLRIADEAKKAGMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIQGKDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWDIYKGIAKKFSEVCVGHLGKETDVVTLPIQHDSAAEMAQPFDVKDWKKGECDLIPGKTAPHIIPVERDYPATYERFTSIGPLLETIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPKLETAIDAAEMILTLAPETNGQVAVKAWKALSEFTGRDHAHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQSLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGEKSNGNKEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEADAKDLGIEDNDWIEVFNANGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEVTGQRGGIHNSVTRITPKPTHMIGGYGHLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>LR134475.1|VEI10449.1|3097116_3098505_-|Nitrate/nitrite-transporter
MSQSSIPEKASSSVITDWRPEDPEFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLNKVGFQFTTDQLFMLTALPALSGALLRVPYAFMVPLFGGHRWTAFSTGIMIIPCVWLGFAVQDTSTPFSVFVIISLLCGFAGANFASSMANISFFFPKEKQGGALGVNGGLGNMGVSVMQLVAPLVVSISIFAVFGGSGSEQPDGSMLYLENAAWIWVPFLIIFTLAAWFFMNDLSASKASLSEQLPVLKRLHLWIMALLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSMGGAISDRLGGTRVTLVNFVVMAIFCALLFLTLPTNGQGGNFIAFFAVFMVLFLTAGLGSASTFQMISVIFRKLTMDRVKAQGGSEAQAMREAATDTAAALGFISAIGAIGGFFIPKAFGISLDLTGSPAGAMKVFLVFYIACVVITWAVYGRKQK
>LR134475.1|VEI10450.1|3098816_3100595_+|Nitrate/nitrite-sensor-protein
MLKRLFTPLTLVNQLALIVLLATIIGVAGMAISARLVHGVQGSAHAINKAGSLRMQSYRLLAAIPLTANDQKLFNDMTATVFSPELQYSARRDGQEVQLKALQQYWQLSLGPGMKQAVRQSDVAQDVADFVDRIDQLVTAFDHTTEQRIERVVWIHRILAIGMALLLIFTIIWLRARLLRPWKQLLGMARAVSQRDFTQRAHISGRNEMATLGMALNNMSEELAESYAVLERRVQEKTAGLEQKNEILAFLWQANRRLHSSAPLCERISPVLNGLQGLTLLRDIEVRVYDLEDEDNHQEFACHSDIECDDKGCYLCPRDLPPLPDGGTTLKWRLSDAHNQYGILLATLPVGRHLSHDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDSLPDESRLLLGQIRNELNTSWAQLRELLTTFRLQLTEAGLRPALEASCQEYSAHFGFTVQLDYQLPPRFVPSHQAIHLLQIAREALSNALKHANATEVIVTVSQRDNQVRLVVADNGRGVPENAERSNHYGLIIMRDRAQSLRGDCQVRRRETGGTEVVVTFIPEKSFSIQ
>LR134475.1|VEI10451.1|3100605_3101256_+|nitrate/nitrite-response-regulator-protein-narL
MSQQERATILLIDDHPMLRTGVKQLVSMAPDIQVIGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRVVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATSDRDISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>LR134475.1|VEI10452.1|3101252_3102629_-|Putative-invasin
MPLPYRLTPSLTLLLLLTGAPAWALIANDSSMPPQATLPDLGIAPQVDDDAKHFAEMAKKFGEASMSDNGLTTGEQARMFAISKIGNEFSHQLENWLSPWGNANIDLLVDKEGIFTGSKGSWFVPLQDNERYLTWNQYSVTRRENDLVGNVGLGQRWRVGSWLLGYNSFYDKVLSESLARGSIGAEAWGEYLRLSANYYHPLGDWQLRENQTQEQRMAVGYDVTAQARLPFYQHINTSVSVEQYFGDSVDLFHSGTGYHNPVAVSVGLNYTPVPLVTVTAKHKQGENGVSQNNVGLKLNYRFGVPLKQQLAADEVAISNSLRGSRYDSPERDNLPVVEYRQRKNLTVYLATPPWDLHSGETVQLKLQINSLHGIKSLHWQGDTQALSLTPPVNANSADGWSIIMPVWNSEPGAVNRWRLSVVVEDKSGQRVSSNEIALALTEPLVTFTAPDVSWTESP

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Crispr_ID: LR134475_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134475_3

3577739-3577812

Orphan

Consensus_repeat	Method
CGGGTAAGGCGTTAGCCGCCACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134475_3

>merge|LR134475|3|3577739-3577812|CRISPRCasFinder
CGGGTAAGGCGTTAGCCGCCACCCGACAAAAAACGGCACCGCGGGTAGCCCGGGTAAGGCGTAGCCGCCACCCG

>LR134475|3|3|3577739-3577812|CRISPRCasFinder
CGGGTAAGGCGTTAGCCGCCACCCG	ACAAAAAACGGCACCGCGGGTAGC
CCGGGTAAGGCGTAGCCGCCACCCG

Protein	Signature genes	Signature genes Name	Protein_function
LR134475.1\|VEI10894.1\|3570194_3571010_+\|Hydrolase-(HAD-superfamily)	unknown	unknown	gnl\|CDD\|272905
LR134475.1\|VEI10904.1\|3582362_3583739_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|225343
LR134475.1\|VEI10893.1\|3567611_3570044_+\|Pyruvate-formate-lyase	unknown	unknown	gnl\|CDD\|273798
LR134475.1\|VEI10906.1\|3585043_3586156_-\|citrate-transporter	unknown	unknown	gnl\|CDD\|238537
LR134475.1\|VEI10898.1\|3575098_3577462_+\|Alpha-glucosidase	unknown	unknown	gnl\|CDD\|224418
LR134475.1\|VEI10901.1\|3580253_3580502_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134475.1\|VEI10895.1\|3571149_3572415_+\|Protein-of-uncharacterised-function-(DUF1479)	unknown	unknown	gnl\|CDD\|369327
LR134475.1\|VEI10897.1\|3573781_3575083_+\|hexuronate-transporter	unknown	unknown	gnl\|CDD\|340877
LR134475.1\|VEI10889.1\|3563441_3564383_-\|Isoaspartyl-aminopeptidase;-Asp-X-dipeptidase	unknown	unknown	gnl\|CDD\|182319
LR134475.1\|VEI10900.1\|3579599_3580382_+\|Protein-tyrosine/serine-phosphatase	unknown	unknown	gnl\|CDD\|379135
LR134475.1\|VEI10908.1\|3586806_3586932_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380222
LR134475.1\|VEI10907.1\|3586152_3586620_-\|Mn-dependent-transcriptional-regulator-MntR	unknown	unknown	gnl\|CDD\|182927
LR134475.1\|VEI10903.1\|3581585_3582302_-\|Transcriptional-regulator,-GntR-family	unknown	unknown	gnl\|CDD\|225099
LR134475.1\|VEI10890.1\|3564562_3565798_+\|Molybdopterin-biosynthesis-protein-MoeA	unknown	unknown	gnl\|CDD\|182643
LR134475.1\|VEI10896.1\|3572411_3573485_-\|Transcriptional-regulator,-LacI-family	unknown	unknown	gnl\|CDD\|224525
LR134475.1\|VEI10892.1\|3566708_3567608_+\|Pyruvate-formate-lyase-activating-enzyme	unknown	unknown	gnl\|CDD\|274163
LR134475.1\|VEI10905.1\|3583895_3584936_-\|Oxidoreductase	unknown	unknown	gnl\|CDD\|381317
LR134475.1\|VEI10891.1\|3565797_3566553_+\|Molybdopterin-biosynthesis-protein-MoeB	unknown	unknown	gnl\|CDD\|180204
LR134475.1\|VEI10902.1\|3580571_3581495_+\|L,D-transpeptidase-YbiS	unknown	unknown	gnl\|CDD\|182341
LR134475.1\|VEI10899.1\|3577827_3579420_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|237894

Protein	Function_ID	Function_description	E-value
LR134475.1\|VEI10894.1\|3570194_3571010_+\|Hydrolase-(HAD-superfamily)	gnl\|CDD\|272905	TIGR00099, Uncharacterized_protein_MCAP_0867, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences. [Unknown function, Enzymes of unknown specificity].	7.40504e-66
LR134475.1\|VEI10904.1\|3582362_3583739_-\|6-phospho-beta-glucosidase	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	2.47116e-157
LR134475.1\|VEI10893.1\|3567611_3570044_+\|Pyruvate-formate-lyase	gnl\|CDD\|273798	TIGR01774, Putative_formate_acetyltransferase_3, glycyl radical enzyme, PFL2/glycerol dehydratase family. This family previously was designated pyruvate formate-lyase, but it now appears that members include the B12-independent glycerol dehydratase. Therefore, the functional definition of the family is being broadened. This family includes the PflF and PflD proteins of E. coli, described as isoforms of pyruvate-formate lyase found in a limited number additional species. PFL catalyzes the reaction pyruvate + CoA -> acetyl-CoA + formate, which is a step in the fermentation of glucose.	0
LR134475.1\|VEI10906.1\|3585043_3586156_-\|citrate-transporter	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	2.3497e-91
LR134475.1\|VEI10898.1\|3575098_3577462_+\|Alpha-glucosidase	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
LR134475.1\|VEI10895.1\|3571149_3572415_+\|Protein-of-uncharacterised-function-(DUF1479)	gnl\|CDD\|369327	pfam07350, DUF1479, Protein of unknown function (DUF1479). This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.	0
LR134475.1\|VEI10897.1\|3573781_3575083_+\|hexuronate-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.71542e-74
LR134475.1\|VEI10889.1\|3563441_3564383_-\|Isoaspartyl-aminopeptidase;-Asp-X-dipeptidase	gnl\|CDD\|182319	PRK10226, PRK10226, isoaspartyl peptidase; Provisional.	0
LR134475.1\|VEI10900.1\|3579599_3580382_+\|Protein-tyrosine/serine-phosphatase	gnl\|CDD\|379135	pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This family is closely related to the pfam00102 and pfam00782 families.	1.64834e-72
LR134475.1\|VEI10908.1\|3586806_3586932_+\|Uncharacterised-protein	gnl\|CDD\|380222	NF033226, small_MntS, manganase accumulation protein MntS. Members of this family are MntS, a small protein of about 42 amino acids that seems to play assist bacteria in accumulating manganese when iron is limiting. It may function as a manganese chaperone, or may inhibit manganese efflux transporters.	8.63856e-23
LR134475.1\|VEI10907.1\|3586152_3586620_-\|Mn-dependent-transcriptional-regulator-MntR	gnl\|CDD\|182927	PRK11050, PRK11050, manganese-binding transcriptional regulator MntR.	4.05373e-90
LR134475.1\|VEI10903.1\|3581585_3582302_-\|Transcriptional-regulator,-GntR-family	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	7.32122e-63
LR134475.1\|VEI10890.1\|3564562_3565798_+\|Molybdopterin-biosynthesis-protein-MoeA	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
LR134475.1\|VEI10896.1\|3572411_3573485_-\|Transcriptional-regulator,-LacI-family	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.97726e-59
LR134475.1\|VEI10892.1\|3566708_3567608_+\|Pyruvate-formate-lyase-activating-enzyme	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	1.89076e-138
LR134475.1\|VEI10905.1\|3583895_3584936_-\|Oxidoreductase	gnl\|CDD\|381317	cd19091, AKR_PsAKR, Polaromonas Sp. aldo-keto reductase and similar proteins. The prototype of this family is an uncharacterized aldo-keto reductase from Polaromonas sp.	0
LR134475.1\|VEI10891.1\|3565797_3566553_+\|Molybdopterin-biosynthesis-protein-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	1.46205e-180
LR134475.1\|VEI10902.1\|3580571_3581495_+\|L,D-transpeptidase-YbiS	gnl\|CDD\|182341	PRK10260, PRK10260, L,D-transpeptidase; Provisional.	0
LR134475.1\|VEI10899.1\|3577827_3579420_-\|ABC-transporter	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0

>LR134475.1|VEI10898.1|3575098_3577462_+|Alpha-glucosidase
MKTLKHWSLHQQLEHHVELTVDGQHTLCLYVLEENLFRVLLKRQGQLAMDRTWSIAPQQDVPWEGRARDDLSGFSLPAWQMTKEDDALTIATRQLRVTVHQPLWLEWSYRDDAGEWQTLANDRPTSAYLANAHGDGVAHYLSRRKDERFYGLGEKAGDLQRNGKRYEMRNLDAMGYNAVSTDPLYKHIPFTITQRSDISYGLFYDNLSSCWLDLGNEIDNYHTAYRRWQAEAGDIDYYLFTGKQVLDVTKAFVRLTGKTLFGPKWSLGYSGSTMHYTDAPDAQNQLMNFIRLCEQHAIPCDSFQLSSGYTSINGKRYVFNWNYDKVPQPKVMSQSFHDAGLKLAANIKPCLLQDHPRYGEVAERGLFIRDSQTDSPERSSFWDDEGSHLDFTNPHTVTWWQEGVTTQLLEMGIDSTWNDNNEYEVWDGEARCYGFGREIAIKHIRPVMPLLMMRASLEAQQRFAPQKRPYLISRSGCAGMQRYVQTWSGDNRTNWDTLRYNTRMGLGMSLSGLFNVGHDVGGFSGDKPEPELFVRWVQNGVMHPRFTIHSWNDDQTVNEPWMYPEITPAIRSAIELRYRLLPYLYTLLWQAHADDEPMLRPTFLDHQHDTQTFAECDDFMLGRDLLVASVVEPGARQRQLWLPDNQDGWYDFYSHQWFAGGQWVTLDAPLEKLPLLVRAGAGLPLSERISHVDAQKDDRRELQLFPLKGTGSTRGLLFEDDGESWGYKEGDALWLEWEMTCSASSINLKINARGNYSPTWKALKLSLPAGEKRQLLVNGVEGTEWRL
>LR134475.1|VEI10897.1|3573781_3575083_+|hexuronate-transporter
MSQGLNNDMAVSKTRRVVKNLRWWVLVLFLLGVTVNYITRNSLGIIAPELKATLGITTEQYSWIVGAFQLAYTIFQPLCGWLIDVIGLKLGFMVCATLWAVACIAHAGAGSWLHLAILRFFMGGAEAAATPANAKTIGEWFPKSERPIAAGWAGVGFSIGAMLAPPIIYFAHASFGWQGAFMFTGVLALLWVVLWWAFYQSPEKHPNLSQGELEYIKQDNEAPPVKLPFFTALKTVSKNKRFYGIAIPAFMAEPAWAVLSFWVPLYLAKEHGMDLKQIAMFAWLPFLAADLGSVVSGYLTRLYVRWFGCTRVNSVIASSVTGAFLMISLALVAITRDPYITIILISIGGFGHQIISCMLSALVVESFDKGQMATVNGMRGSAAWIASFLFSLLIGVTADKIGFNPLFIAMGFFDLIGAVFLVAFIAERRAKRA
>LR134475.1|VEI10896.1|3572411_3573485_-|Transcriptional-regulator,-LacI-family
MDKKLRVAEIAARTGLSASTVSRVLAGKANTSEKARQAVLACAHELGVMQGLAAGRLLLNNLLIFAPQRAFDERSDIFYYRVIQSINNALAPHEVRLRYCALEENDSDANLFLARMNETDTQAAVLLGIDDRHIHALAADLGKPCVLINCRDEGMRLPSIAPDHRLIGQCAARYLFDMGHQAVMNVMCLRRYTMELRLVGIKEAWRARNLRFTGSRDLISVANFSARETEEQVGAWLDALQGRPMPTAFLVGGDFMAAGTVSALQKRGLRVPQDVSVMSIDGFNLAAIQDVPLTAIHVPRDELGSEAVHLLQQRLLRPEAPHGSLLLHGALVVRDSVRRIRPGKSHTAVEQQGLYDD
>LR134475.1|VEI10895.1|3571149_3572415_+|Protein-of-uncharacterised-function-(DUF1479)
MAALPTHETLPADHKAAIRQMKQALRAQIGDVQAVFDKLSARISERLDEINALKAAGQEVWPTIPFSDIAQGKVSDAQREAIKRRGCAVIKGHYPREQALAWDNAMLEYLDLNHFDDVYKGPGDSFFGSLEASRPEIYPIYWSPSQMQARQSDEMAAVQSFLNRLWRFEQDGKRWFDPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFANVFNGNIDAYDPWDAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMIPGQGLLHVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGKVLPISEQWHPLLIKALSSIPALNAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAQKVKIALEKGASPGDFPREDYECDWQARFTVADLNDHGKRALGMKN
>LR134475.1|VEI10894.1|3570194_3571010_+|Hydrolase-(HAD-superfamily)
MTVKVIVTDMDGTFLNDAKQYDRPRFLAQFAQLKQQGIEFVVASGNQYYQLISFFPEIREQISFVAENGALVYEHGKQVFHGELTRHESQVVIGELLKDPQLNFVACGLQSAYVSDKAPDAFVELMSKHYHRLQRVSDYHRIDDTLFKFSLNLPDSDIPQLIDKLHVSLDGIMKPVTSGFGFVDLIIPGLHKANGISRLLKRWNLSPQQCVAIGDSGNDAEMLKLVKYAFAMANAADSIKAITGFTTDDNNHDGALKVIQAVLDKTSPFND
>LR134475.1|VEI10893.1|3567611_3570044_+|Pyruvate-formate-lyase
MTTLKLDTLSARIQAHKMALVHIVKPPVCTERAQHYTAAYQQHLDKPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFSVSEENKRVLHEVCPWWRGQTVQDRCYGMFTDEQKALLATGIIKAEGNMTSGDAHLAVNYPLLLEKGLDGMRAKVAERRSRINLTVLEDLHGEQFLKAIDIVLAAVSEHCKRFATLARDMAAQEPRELRRDELLAIAENCEIIAHQPPKTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRDVELQQSLDREQAIELLHCCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNLVDGQPQDAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLATLEGGRDATSGQVFLAQQHALSKGNFANFDQVLEDWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFDQGVIGQQELAKALAEDFAGLTHEQLRQRLINGAPKYGNDDDSVDILLARAYQTYIDELKQYHNPRYGRGPIGGNYYAGTSSISANVPFGAQTMATPDGRKAHAPLAEGASPASGTDHLGPTAVISSVGKLPTGAILGGVLLNQKLNPSTLENESDKQKLMVLLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDTQDDIIARTEHTL
>LR134475.1|VEI10892.1|3566708_3567608_+|Pyruvate-formate-lyase-activating-enzyme
MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARSEDLLYDARLCLDGCELCQQAAPEVITRTLDGLIIHRQNVNDSHIAALRHCCPTTALTVCGEEKSVTEIMATVLRDKPFYDRSGGGITLSGGEPFMNPALAQALFEASHQAGIHTAVETCLHVPWKYIEPSLPFVDLFLADLKHVDEAVFQQWTDGSARRVLDNLQRLAQAGKKIIIRVPLIQGFNASEADITAITDFAADRLQVSEIHFLPYHTLGMNKYQLLSQPYTAPDKPLAAPELLAFAQQYAQSKGLTATLRG
>LR134475.1|VEI10891.1|3565797_3566553_+|Molybdopterin-biosynthesis-protein-MoeB
MAVELSDEEMLRYNRQIVLRGFDFDGQERLKAARVLVVGLGGLGCAAAQYLAAAGVGQLTLLDFDTVSLSNLQRQTLHSDATIGQPKVDSARDALARINPHVRQVTIDAMLDDAALATQIADHHLVLDCTDNVAVRNQLNAGCFQHKTPLISGAAIRMEGQISVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLVGTIGSLQAMEAIKLLTGYGTPARGKIVMYDAMTCQFREMKLMRHPQCEVCGSR
>LR134475.1|VEI10890.1|3564562_3565798_+|Molybdopterin-biosynthesis-protein-MoeA
MDFTAGLMPLDTALTQMLDRISPLQATETLPLLQAFSRVTAHDVVSPLDVPGFDNSAMDGYAVRLADLTDGAALPVAGKAFAGQPFHDAWPAGTCIRIMTGAPVPEGCDAVVMQEETEQTDAGVRFIAPVKAGQNIRRRGEDIANGAVVFPAGTRLTVAELPVLASLGIADVEVVRKVRVAVFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIPDDPAKLRDAFIAADQQADVVISSGGVSVGEADYTKTILEELGEIGFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNRGQTQPMRLRVRAASRLKKSPGRLDFQRGVLQRNPEGELVVSTTGHQGSHIFSSFSLGNCFIVLERERGNVEAGEWVEVEPFNHLFGGL
>LR134475.1|VEI10889.1|3563441_3564383_-|Isoaspartyl-aminopeptidase;-Asp-X-dipeptidase
MGKAVIAIHGGAGAISRAQMTQAREREYVAALSAIVDSGQKMLAAGASALDAVTEAVRLLEECPLFNAGIGSVFTHDQTHELDACVMDGYSLQAGAVAGVKHLRNPVLAARLVLEESPHVLLIGEGAEKFAASRGMALVENELFSTTERLLQLQQAKEGGEIILDHHAAPLDERHKMGTVGAVALDLAGNLAAATSTGGMTNKLPGRVGDSPVPGAGCYANNASVAVSCTGTGEVFMRTLAAYDISALMEYGNLSLFEACERVVQEKLPALGGSGGLIAIDREGNVVLPFNCEGMYRAWCYAGDTPTIGIYRE
>LR134475.1|VEI10899.1|3577827_3579420_-|ABC-transporter
MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHGELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIADLQAFVSRFSANASKSRQATSRARQIDKIKLDEVKASSRQNPFIRFEQDKKLFRNALEVEALAKGFDNGPLFKGVNLLLEVGEKLAVLGTNGVGKSTMLKTLVGELEADNGTVKWSENARIGYYAQDHAEDFENDLTVFDWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILVMDEPTNHLDMESIESLNMALEMYQGTLIFVSHDREFVSSLATRVLEITPERVIDFSGNYEDYLRSKGIE
>LR134475.1|VEI10900.1|3579599_3580382_+|Protein-tyrosine/serine-phosphatase
MTTRTSHPAFISLQGGINFRDLGGQRAADGRRVRSGKLLRSGSLHNMTPEDLNHLSAIPLSRVLDYRDPTEVNRSPDRLNSEAFYLNAPANPLSSSVNAKVTEFNAATLNTMDGEQFMLQLYRQLPFNNAAYRQLTQWLMEPFDGALLQHCAVGKDRTGVGCALTLFALGCDSNTVMEEYLLTQGMLAQVEGFLLDTFGEGLNEHGRKNLAAIMTVQESYLATALSSIEQHYGHVDRWLEQEYRLTPQAREALQSRLLED
>LR134475.1|VEI10901.1|3580253_3580502_-|Uncharacterised-protein
MLSDKQVNQMCTKSQFFPVANSVVRNAPLSRRIVWLVKRGLIFQQPRLQCFTRLRRQAVFLFQPAVDMTVMLFNAGQRGRQI
>LR134475.1|VEI10902.1|3580571_3581495_+|L,D-transpeptidase-YbiS
MKNMKLSTLLAAAFAIVGFCNTASAVTYPLPTDGSRLIGQNQVITIPDDNKQPLEYFAAKYQMGLSNMLEANPGVDTYLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYAAEGNPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFENVPVGTRVQFIDEPVKATTEPDGSRYVEVHNPLSTTEAQFKGGEIVPISLTQAVQSVTSQPDVDQSVMDQAIQNRSGMPVRLN
>LR134475.1|VEI10903.1|3581585_3582302_-|Transcriptional-regulator,-GntR-family
MTAKYLNIAREIKKRIISQQYPASAPLPDQFALAAEFNTSRMTIQQAMRQLIVEGLIYTRKGQGTFVRKNFLQLSQWELPGSDYFGATKTWEHLGEVQSEVVRFELRFPSEKEQSSLLIDADAPVYDFVRLRLLNGEPISLDLTVMPVALVPGFNKSHLQTSVFRYVQETLGLKLMGSYRVVRAMKPDELDKLHLNCEPTDPVLEVEQVIYLEDGTPLEYAHCHYRYDHGGVILVNNG
>LR134475.1|VEI10904.1|3582362_3583739_-|6-phospho-beta-glucosidase
MKDKLPANFLWGNSVSSMQTEGAWNEGGKGMSVYDIREPSEFASDWKVATDSYHRFREDFDLMQDLGMNCYRFQIAWSRVCPQGDGEFNEEGIAFYHQFIDELIARGIEPMICLYHFDMPLSLAERYNGFTDRRVMDAFIRYGQKMIDCYGDKVKYWLTFNEQNLYHSPEAFLITGYLRGDKTLRELYQIQHHVMMAHVHLTDYLHQAKPQCLMGGMLAHALVYPATCKPRDILCAQQLDEFLNQNLLRAYAGEGYSPEVMHFVAREGFDDIYRPEDIALMARVKVDYLAFSYYASRTLNSDAIPPGTAVNNYMLFGNQDNPYLKATEWNWQIDPLGFRTIITRYYNDWRLPVFPIENGIGVIESWDGENQVADDYRIAYHRDHINAMKAAMFEDGAQVIGYLGWGLIDILSSQGDMRKRYGVVYVNRENHDLKDLKRVPKKSYAWLKRVIHSNGEEM
>LR134475.1|VEI10905.1|3583895_3584936_-|Oxidoreductase
MRYQKLGNTGLFVSELCLGTMTFGGEEGMWGKIGQLRQAEAEQLVGSALDAGINFIDTANVYSEGRSEEITGQALKNLKIPRENVVVATKVFGETGTAGVNSRGSSRYHIMGSVKESLRRLQLDHIDLYQLHGFDPATPIEETLSALDTLVQQGHVRYIGVSNWAAWQIAKALGIAERLGLSRFASLQAYYTIAGRELERELVPMMQSEGLGLMVWSPLAGGLLSGKYRRDGQAEAGGRRLEFDFPPVNKDRAFDCIDVMQVIAEAKGVSVAQIALAWLLHQTAVTSVIIGAKRAEQLQDNIAATAIRLSEDELRQLDAVSALPREYPGWMLERQGEYRRKQLDAQ
>LR134475.1|VEI10906.1|3585043_3586156_-|citrate-transporter
MNLPFVQSLARDRFLHLLLLIAVILSLFVPFAPQRWGQAIDWHTIITLSGLMLLTKGIELSGYFDVLGRKMARRFVTERQLAIFMVLAAALLSTFLTNDVALFIVVPLTLTLKKWCAIPVNRLIIFEALAVNAGSLLTPIGNPQNILLWGRSGLSFLAFIGQMLPLAAAMMITLLVLCWFCFPAARLNYQSSDKAPEWRPQLVWSCLAFYLIFLAALEMKQELWGLALIAVGFLLLARAVIINVDWSLLLVFMAMFIDVHLLTQLPVLQQWLNDVGQLSHGGLWLTAIGLSQFISNVPSTILLLNYVPPTMLLAWAVNVGGFGLLPGSLANLIALRMAGDRRIWWRFHLYSIPLLIWAALTGYAMLALWR
>LR134475.1|VEI10907.1|3586152_3586620_-|Mn-dependent-transcriptional-regulator-MntR
MNRRAGKPITKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLINEVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIEQIPWRGIFLTPEGEKLAHESRERHQIVENFLLAIGVSPEIARRDAEGMEHHVSEETLAQFKLFTQRLHAE
>LR134475.1|VEI10908.1|3586806_3586932_+|Uncharacterised-protein
MNEFKRCLNVFSHSPFKVRLMLIGMLCDMINGKPQQDKPNH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134475_3	3.1\|3577764\|24\|LR134475\|CRISPRCasFinder	3577764-3577787	24	LR134475.1	348804-348827	0	1.0
LR134475_3	3.1\|3577764\|24\|LR134475\|CRISPRCasFinder	3577764-3577787	24	LR134475.1	4648388-4648411	1	0.958

1. spacer 3.1|3577764|24|LR134475|CRISPRCasFinder matches to position: 348804-348827, mismatch: 0, identity: 1.0

acaaaaaacggcaccgcgggtagc	CRISPR spacer
acaaaaaacggcaccgcgggtagc	Protospacer
************************

2. spacer 3.1|3577764|24|LR134475|CRISPRCasFinder matches to position: 4648388-4648411, mismatch: 1, identity: 0.958

acaaaaaacggcaccgcgggtagc	CRISPR spacer
acaaaaaacgacaccgcgggtagc	Protospacer
**********.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134475_3	3.1\|3577764\|24\|LR134475\|CRISPRCasFinder	3577764-3577787	24	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	323589-323612	1	0.958
LR134475_3	3.1\|3577764\|24\|LR134475\|CRISPRCasFinder	3577764-3577787	24	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	324019-324042	2	0.917
LR134475_3	3.1\|3577764\|24\|LR134475\|CRISPRCasFinder	3577764-3577787	24	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447690-447713	2	0.917
LR134475_3	3.1\|3577764\|24\|LR134475\|CRISPRCasFinder	3577764-3577787	24	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447529-447552	3	0.875
LR134475_1	1.1\|98364\|44\|LR134475\|CRISPRCasFinder	98364-98407	44	CP052389	Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1	32047-32090	5	0.886
LR134475_1	1.1\|98364\|44\|LR134475\|CRISPRCasFinder	98364-98407	44	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	95428-95471	7	0.841
LR134475_1	1.1\|98364\|44\|LR134475\|CRISPRCasFinder	98364-98407	44	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	669480-669523	8	0.818

1. spacer 3.1|3577764|24|LR134475|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 1, identity: 0.958

acaaaaaacggcaccgcgggtagc	CRISPR spacer
acaaaaaacggcaccgcgggtaga	Protospacer
***********************

2. spacer 3.1|3577764|24|LR134475|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 2, identity: 0.917

acaaaaaacggcaccgcgggtagc	CRISPR spacer
caaaaaaacggcaccgcgggtagc	Protospacer
  **********************

3. spacer 3.1|3577764|24|LR134475|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 2, identity: 0.917

acaaaaaacggcaccgcgggtagc	CRISPR spacer
acaaaaaacggcaccgcgagtagt	Protospacer
******************.****.

4. spacer 3.1|3577764|24|LR134475|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 3, identity: 0.875

acaaaaaacggcaccgcgggtagc	CRISPR spacer
caaaaaaacggcaccgcgagtagc	Protospacer
  ****************.*****

5. spacer 1.1|98364|44|LR134475|CRISPRCasFinder matches to CP052389 (Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1) position: , mismatch: 5, identity: 0.886

-gcgccgtccggtagcccgggtaaggcgacagccgctacccggga	CRISPR spacer
tgcgcggtgc-gtagcccgggtaaggcgtcagccgccacccggga	Protospacer
 **** ** * ***************** *******.********

6. spacer 1.1|98364|44|LR134475|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.841

gcgccgtccggtagcccgggtaaggcgacagccgctacccggga	CRISPR spacer
gctgggatgggtagcccgggtaaggcgtcagccgctacccggga	Protospacer
**   * . ****************** ****************

7. spacer 1.1|98364|44|LR134475|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.818

gcgccgtccg--gtagcccgggtaaggcgacagccgctacccggga	CRISPR spacer
--accagtgggagtagcccgggtaaggcgccagccgctacccggga	Protospacer
  .**. . *  ***************** ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1690966 : 1750392

Enterobacteria_phage(17.24%)

integrase,terminase,tail,lysis

attL 1687559:1687573|attR 1718907:1718921

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1687559:1687573	attL	NA	NA	NA	NA
VEI09136.1\|1690966_1693069_+	translation elongation factor 2 (EF-2/EF-G)	E4ZFJ7	Streptococcus_phage	9.8e-64	27.6
VEI09137.1\|1693107_1694532_-	Exodeoxyribonuclease I	NA	NA	NA	NA
VEI09138.1\|1694713_1695892_+\|integrase	phage integrase family protein	K7P703	Enterobacteria_phage	5.4e-221	93.1
VEI09139.1\|1695872_1696064_-	putative excisionase	A0A0P0ZBL0	Stx2-converting_phage	5.4e-30	93.7
VEI09140.1\|1696169_1696400_-	Uncharacterised protein	G8C7S3	Escherichia_phage	1.9e-29	84.2
VEI09141.1\|1696401_1696623_-	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	Q9ZXI6	Pseudomonas_virus	2.3e-08	48.3
VEI09142.1\|1696619_1696811_-	Protein of uncharacterised function (DUF1382)	A0A0P0ZC60	Stx2-converting_phage	4.9e-15	69.5
VEI09143.1\|1696807_1697419_-	Uncharacterised protein	NA	NA	NA	NA
VEI09144.1\|1697415_1697634_-	Uncharacterised protein	NA	NA	NA	NA
VEI09145.1\|1697630_1698182_-	adenine-specific DNA methyltransferase	G8C7S6	Escherichia_phage	1.8e-94	87.4
VEI09146.1\|1698303_1698588_-	Uncharacterised protein	NA	NA	NA	NA
VEI09147.1\|1698602_1699070_-	single-strand binding protein	A0A2H4JHK3	uncultured_Caudovirales_phage	4.2e-44	66.0
VEI09148.1\|1699070_1699796_-	DNA damage response protein A	B8K1D9	Salmonella_phage	4.1e-86	65.3
VEI09149.1\|1699792_1699951_-	Uncharacterised protein	B8K1E0	Salmonella_phage	1.0e-05	50.0
VEI09150.1\|1699947_1700145_-	Uncharacterised protein	NA	NA	NA	NA
VEI09151.1\|1700153_1701125_-	IgA-specific serine endopeptidase autotransporter precursor	A0A077KCC0	Edwardsiella_phage	2.5e-38	74.6
VEI09152.1\|1701195_1701402_-	putative prophage Kil protein	K7P6H3	Enterobacteria_phage	8.7e-26	77.9
VEI09153.1\|1701394_1701532_-	Uncharacterised protein	NA	NA	NA	NA
VEI09154.1\|1701993_1702686_-	Predicted transcriptional regulator	A0A2I6PIE7	Escherichia_phage	1.8e-59	54.1
VEI09155.1\|1702813_1703062_+	antirepressor protein Cro	A0A2H4FNF3	Salmonella_phage	2.6e-16	52.7
VEI09156.1\|1703158_1703701_+	regulatory protein CII from bacteriophage origin	M9NZI6	Enterobacteria_phage	1.9e-67	73.3
VEI09157.1\|1703885_1704818_+	protein YfdO	A0A077KB11	Edwardsiella_phage	1.6e-55	79.5
VEI09158.1\|1704814_1705516_+	replication protein P	A0A0M3ULE2	Salmonella_phage	1.4e-102	80.0
VEI09159.1\|1705512_1705806_+	Ren protein from phage origin	M1FPD5	Enterobacteria_phage	3.4e-23	60.2
VEI09160.1\|1705802_1706027_+	Uncharacterised protein	H9C169	Pectobacterium_phage	1.6e-17	55.6
VEI09161.1\|1706023_1706230_+	Uncharacterised protein	NA	NA	NA	NA
VEI09162.1\|1706468_1707614_+	Uncharacterised protein	A0A1Z1LZI1	Serratia_phage	1.7e-17	27.2
VEI09163.1\|1707615_1709850_+	putative klebicin D activity protein	NA	NA	NA	NA
VEI09164.1\|1709859_1710114_+	Colicin-E6 immunity protein (ImmE6) (Microcin-E6 immunity protein)	NA	NA	NA	NA
VEI09165.1\|1710349_1710799_+	NinB family protein	Q8VNP6	Enterobacteria_phage	5.3e-36	50.7
VEI09166.1\|1710929_1711157_+	Crossover junction endodeoxyribonuclease rusA	K7PM48	Enterobacteria_phage	7.8e-28	81.1
VEI09167.1\|1711153_1711270_+	Uncharacterised protein	NA	NA	NA	NA
VEI09168.1\|1711266_1711956_+	phage antitermination protein Q	I6PDF8	Cronobacter_phage	1.3e-57	53.2
VEI09169.1\|1711930_1712068_+	Uncharacterised protein	NA	NA	NA	NA
VEI09170.1\|1712029_1712317_-	Uncharacterised protein	NA	NA	NA	NA
VEI09171.1\|1712738_1712963_+\|lysis	lysis S family protein	M9NZI9	Enterobacteria_phage	6.8e-32	90.5
VEI09172.1\|1712940_1713444_+	lysozyme-like protein	M9P0E5	Enterobacteria_phage	2.0e-87	93.3
VEI09173.1\|1713431_1713899_+\|lysis	bacteriophage lysis protein	Q76H63	Enterobacteria_phage	5.3e-55	71.0
VEI09174.1\|1713945_1714275_-	Uncharacterised protein	NA	NA	NA	NA
VEI09175.1\|1714317_1714644_-	Uncharacterised protein	NA	NA	NA	NA
VEI09176.1\|1715195_1715396_+	Uncharacterised protein	A0A286SGR9	Klebsiella_phage	1.1e-22	78.8
VEI09177.1\|1716462_1716747_-	Uncharacterised protein	NA	NA	NA	NA
VEI09178.1\|1717541_1717787_+	Protein of uncharacterised function (DUF2560)	A0A286N2R1	Klebsiella_phage	8.2e-31	88.9
VEI09179.1\|1718201_1719206_+\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.0e-34	43.5
1718907:1718921	attR	NA	NA	NA	NA
VEI09180.1\|1719183_1720491_+	Terminase-like family.	A0A1B1P9C9	Acinetobacter_phage	6.1e-149	58.9
VEI09181.1\|1720490_1721891_+	Uncharacterised protein	A0A1B0VMH0	Pseudomonas_phage	3.5e-126	52.8
VEI09182.1\|1721874_1722987_+	Phage Mu protein F like protein.	I6PD76	Cronobacter_phage	8.1e-110	54.7
VEI09183.1\|1723072_1723858_+	Uncharacterised protein	A0A1B0VMG1	Pseudomonas_phage	7.1e-68	64.1
VEI09184.1\|1723868_1724822_+	Uncharacterised protein	A0A1B0VMF8	Pseudomonas_phage	1.2e-130	73.4
VEI09185.1\|1725143_1725539_+	Uncharacterised protein	A0A0S2SYB7	Pseudomonas_phage	3.3e-13	44.2
VEI09186.1\|1725540_1725963_+	Uncharacterised protein	K4K619	Caulobacter_phage	1.5e-08	31.3
VEI09187.1\|1725962_1726349_+	Uncharacterised protein	A0A0S2SYG4	Pseudomonas_phage	2.1e-20	44.4
VEI09188.1\|1726350_1726902_+	Uncharacterised protein	G8C7Q1	Escherichia_phage	5.0e-28	39.8
VEI09189.1\|1726898_1727291_+	Uncharacterised protein	NA	NA	NA	NA
VEI09190.1\|1727314_1728487_+	Bacterial Ig-like domain (group 2)	A0A0D4DBN5	Acinetobacter_phage	8.5e-25	27.9
VEI09191.1\|1728541_1729024_+	Uncharacterised protein	NA	NA	NA	NA
VEI09192.1\|1729191_1729359_+	Uncharacterised protein	NA	NA	NA	NA
VEI09193.1\|1729582_1729744_+	Uncharacterised protein	NA	NA	NA	NA
VEI09194.1\|1729883_1730246_-	Arc-like DNA binding domain	H6WRU6	Salmonella_phage	3.3e-12	73.5
VEI09195.1\|1730358_1730532_+	Arc-like DNA binding domain	I6R9A8	Salmonella_phage	5.1e-19	85.7
VEI09196.1\|1730521_1731223_+	P22AR C-terminal domain	H6WRU8	Salmonella_phage	4.7e-39	41.9
VEI09197.1\|1731298_1732030_+	Phage regulatory protein Rha (Phage_pRha)	A0A0P0ZDC0	Stx2-converting_phage	2.3e-28	35.1
VEI09198.1\|1732160_1732832_+	Uncharacterised protein	A0A0R6PJY5	Moraxella_phage	3.6e-44	43.3
VEI09199.1\|1733395_1736098_+\|tail	prothage tail length tape measure	A0A192Y7S1	Enterobacteria_phage	7.1e-83	34.8
VEI09200.1\|1736099_1736573_+	alkanesulfonate ABC transporter permease	A0A286S298	Klebsiella_phage	2.0e-57	66.4
VEI09201.1\|1736559_1737042_+	Domain of uncharacterised function (DUF1833)	A0A286S2B1	Klebsiella_phage	2.7e-62	74.4
VEI09202.1\|1737051_1737432_+	COG2116: Formate/nitrite family of transporters	A0A286S2A6	Klebsiella_phage	5.5e-58	78.6
VEI09203.1\|1737428_1740464_+	putative kinase	A0A286S259	Klebsiella_phage	0.0e+00	66.8
VEI09204.1\|1740540_1743456_+	Uncharacterised protein	A0A286S1P0	Klebsiella_phage	3.0e-31	61.9
VEI09205.1\|1743563_1743854_+	Uncharacterised protein	K7PGV5	Enterobacterial_phage	1.9e-10	41.2
VEI09206.1\|1743853_1745119_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	3.2e-203	82.0
VEI09207.1\|1745225_1745651_-	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	6.6e-52	72.1
VEI09208.1\|1745663_1746953_-	arsenical pump membrane protein	A0A2H4J144	uncultured_Caudovirales_phage	4.9e-167	70.4
VEI09209.1\|1746997_1747318_-	DNA-binding transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	7.7e-21	43.8
VEI09210.1\|1747403_1748102_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.7e-89	68.9
VEI09211.1\|1748176_1748854_-	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	3.1e-80	60.1
VEI09212.1\|1749225_1750392_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.1e-185	81.3

DBSCAN-SWA_2

1985441 : 2031036

Moraxella_phage(28.57%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI09397.1\|1985441_1987502_+\|protease	protease 2	NA	NA	NA	NA
VEI09398.1\|1987504_1988164_-	Exodeoxyribonuclease X	A0A0H4IT92	Pseudoalteromonas_phage	7.6e-15	30.1
VEI09399.1\|1988243_1988474_-	DNA polymerase III theta subunit	H9C187	Pectobacterium_phage	3.5e-15	57.4
VEI09400.1\|1988608_1988983_+	Protein yobA precursor	NA	NA	NA	NA
VEI09401.1\|1988986_1989856_+	Copper resistance protein D	NA	NA	NA	NA
VEI09402.1\|1989872_1990211_+	Putative periplasmic or exported protein	NA	NA	NA	NA
VEI09403.1\|1990598_1991546_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
VEI09404.1\|1991564_1993889_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
VEI09405.1\|1993891_1994641_-	Sigma-fimbriae chaperone protein	NA	NA	NA	NA
VEI09406.1\|1994658_1995177_-	Sigma-fimbriae uncharacterized subunit	NA	NA	NA	NA
VEI09407.1\|1995198_1995771_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
VEI09408.1\|1996516_1997467_-	Virulence factor VirK	NA	NA	NA	NA
VEI09409.1\|1997630_1998287_+	Serine/threonine protein phosphatase 1	K7P6H8	Enterobacteria_phage	1.0e-59	53.2
VEI09410.1\|1998283_1998475_-	Protein of uncharacterised function (DUF1482)	NA	NA	NA	NA
VEI09411.1\|1998576_1998819_-	Protein of uncharacterised function (DUF1480)	NA	NA	NA	NA
VEI09412.1\|1998928_2000317_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
VEI09413.1\|2000449_2003083_-	Paraquat-inducible protein B	NA	NA	NA	NA
VEI09414.1\|2003051_2004335_-	PqiA family integral membrane protein	NA	NA	NA	NA
VEI09415.1\|2004468_2004966_+	COG1956, GAF domain-containing protein	NA	NA	NA	NA
VEI09416.1\|2005063_2005747_+	ProQ: influences osmotic activation of compatible solute ProP	NA	NA	NA	NA
VEI09417.1\|2005766_2007815_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	2.2e-84	33.3
VEI09418.1\|2008050_2008935_+\|protease	Probable protease HtpX	NA	NA	NA	NA
VEI09419.1\|2009005_2010376_-	putative transport protein	NA	NA	NA	NA
VEI09420.1\|2010553_2011345_+	regulatory protein, IclR	NA	NA	NA	NA
VEI09421.1\|2011396_2011636_-	protein YobH	NA	NA	NA	NA
VEI09422.1\|2012013_2012304_+	Uncharacterised protein	NA	NA	NA	NA
VEI09423.1\|2013502_2015248_+	Cell division protein FtsI [Peptidoglycan synthetase]	NA	NA	NA	NA
VEI09424.1\|2015309_2016104_+	Ribosomal RNA large subunit methyltransferase A	NA	NA	NA	NA
VEI09425.1\|2016107_2016674_-	membrane protein	NA	NA	NA	NA
VEI09426.1\|2017084_2017543_-	Predicted membrane protein	NA	NA	NA	NA
VEI09427.1\|2017638_2018490_-	PTS system mannose-specific transporter subunit IID	NA	NA	NA	NA
VEI09428.1\|2018502_2019303_-	PTS system mannose/fructose/sorbose family transporter subunit IIC	NA	NA	NA	NA
VEI09429.1\|2019358_2020324_-	PTS system, mannose-specific IIA component / PTS system, mannose-specific IIB component	NA	NA	NA	NA
VEI09430.1\|2020769_2022329_+	Magnesium and cobalt efflux protein CorC	A0A0R6PEZ3	Moraxella_phage	8.6e-41	44.9
VEI09431.1\|2022345_2023941_-	Rtn protein	NA	NA	NA	NA
VEI09432.1\|2024071_2025436_-	L-serine dehydratase 1	NA	NA	NA	NA
VEI09433.1\|2025599_2026178_-	Hypothetical nudix hydrolase YeaB	NA	NA	NA	NA
VEI09434.1\|2026181_2027537_-	Para-aminobenzoate synthase, aminase component	S4VT78	Pandoravirus	1.0e-42	41.3
VEI09435.1\|2027622_2027808_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEI09436.1\|2027808_2028153_-	endoribonuclease L-PSP	NA	NA	NA	NA
VEI09437.1\|2028284_2030195_+	helicase c2	A0A127AW80	Bacillus_phage	3.6e-89	32.5
VEI09438.1\|2030340_2031036_+\|protease	Inactive homolog of metal-dependent proteases, putative molecular chaperone	NA	NA	NA	NA

DBSCAN-SWA_3

2734607 : 2745612

Shigella_phage(37.5%)

integrase

attL 2736735:2736749|attR 2748505:2748519

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI10110.1\|2734607_2735723_-	putative RecF protein	A0A077SLJ9	Escherichia_phage	1.1e-178	83.6
VEI10111.1\|2735747_2736008_-	Uncharacterised protein	A0A077SK33	Escherichia_phage	3.9e-31	83.1
VEI10112.1\|2736363_2738403_-	dipeptidyl carboxypeptidase II	A0A1V0SIU1	Klosneuvirus	3.7e-15	22.3
2736735:2736749	attL	NA	NA	NA	NA
VEI10113.1\|2738575_2739325_+	3-hydroxypropionate dehydrogenase	NA	NA	NA	NA
VEI10114.1\|2739418_2740105_+	Transcriptional regulator, GntR family	NA	NA	NA	NA
VEI10115.1\|2740149_2740473_-	Universal stress protein G	A0A1W6JNV4	Morganella_phage	1.3e-12	44.3
VEI10116.1\|2740830_2741223_-\|integrase	integrase catalytic subunit	U5P429	Shigella_phage	5.3e-64	93.1
VEI10117.1\|2741223_2741655_-	ISEhe3 orfB	U5P429	Shigella_phage	2.4e-70	88.5
VEI10118.1\|2741699_2741978_-	ISEhe3 orfA	U5P4I9	Shigella_phage	2.6e-33	93.8
VEI10119.1\|2742232_2742484_-	Uncharacterised protein	NA	NA	NA	NA
VEI10120.1\|2742567_2742678_-	Uncharacterised protein	NA	NA	NA	NA
VEI10121.1\|2742677_2742866_-	Uncharacterised protein	NA	NA	NA	NA
VEI10122.1\|2742862_2743168_-	Uncharacterised protein	NA	NA	NA	NA
VEI10123.1\|2744148_2745612_-	Putative D-mannonate oxidoreductase	H8ZJP8	Ostreococcus_tauri_virus	8.6e-43	31.8
2748505:2748519	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2751045 : 2758282

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI10128.1\|2751045_2751372_-	Protein of uncharacterised function UPF0060	A0A218MNG8	uncultured_virus	4.9e-23	53.9
VEI10129.1\|2751520_2751862_+	putative secreted protein	NA	NA	NA	NA
VEI10130.1\|2751919_2752480_+	Spermidine N1-acetyltransferase	NA	NA	NA	NA
VEI10131.1\|2752473_2753184_-	Hypothetical UPF0257 lipoprotein ynfC precursor	NA	NA	NA	NA
VEI10132.1\|2753287_2753560_+	Uncharacterized protein YnfE	NA	NA	NA	NA
VEI10133.1\|2753708_2755154_+	Anaerobic dimethyl sulfoxide reductase chain A	A0A077SK27	Escherichia_phage	3.2e-122	49.1
VEI10134.1\|2755208_2756144_+	Anaerobic dimethyl sulfoxide reductase chain A	A0A077SK27	Escherichia_phage	3.8e-76	48.4
VEI10135.1\|2756154_2756772_+	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.8e-73	57.6
VEI10136.1\|2756773_2757631_+	Anaerobic dimethyl sulfoxide reductase chain C	A0A077SK59	Escherichia_phage	5.4e-21	32.5
VEI10137.1\|2757673_2758282_+	Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD	A0A077SLS7	Escherichia_phage	6.4e-24	35.2

DBSCAN-SWA_5

3441115 : 3531012

Salmonella_phage(58.49%)

holin,protease,integrase,terminase,tRNA,capsid,portal,tail,plate

attL 3498995:3499019|attR 3531087:3531111

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI10768.1\|3441115_3442408_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.1e-93	44.5
VEI10769.1\|3442500_3443844_-	recombination factor protein RarA	G3MBE0	Bacillus_virus	1.1e-81	40.6
VEI10770.1\|3443852_3444464_-	Outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
VEI10771.1\|3444586_3448666_-	cell division protein	S5VNE3	Mycobacterium_phage	2.2e-88	49.5
VEI10772.1\|3448801_3449296_-	Leucine-responsive regulatory protein	NA	NA	NA	NA
VEI10773.1\|3449828_3450797_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	2.7e-61	44.0
VEI10774.1\|3450911_3452678_+	Transport ATP-binding protein CydD	A0A2H4UU96	Bodo_saltans_virus	1.3e-16	24.6
VEI10775.1\|3452678_3454400_+	Transport ATP-binding protein CydC	A0A2R8FG22	Brazilian_cedratvirus	7.6e-14	31.2
VEI10776.1\|3454442_3455147_+\|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
VEI10777.1\|3455506_3455725_+	translation initiation factor IF-1	NA	NA	NA	NA
VEI10778.1\|3455976_3458256_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.8e-165	42.0
VEI10779.1\|3458286_3458604_-\|protease	ATP-dependent Clp protease adaptor protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	9.0e-14	46.9
VEI10780.1\|3458928_3459150_+	cold-shock DNA-binding protein family protein	A0A2H4N7Y6	Lake_Baikal_phage	4.6e-17	62.7
VEI10781.1\|3459218_3461165_-	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	1.0e-38	41.0
VEI10782.1\|3461161_3462277_-	Macrolide-specific efflux protein MacA	NA	NA	NA	NA
VEI10783.1\|3462435_3463392_+	Virulence factor VirK	NA	NA	NA	NA
VEI10784.1\|3463388_3465047_-	Predicted ATP-dependent endonuclease of the OLD family	NA	NA	NA	NA
VEI10785.1\|3465442_3466138_+	MIP family channel proteins	NA	NA	NA	NA
VEI10786.1\|3466255_3467155_+	Putative surface protein	NA	NA	NA	NA
VEI10787.1\|3467298_3468951_+	hydroxylamine reductase	NA	NA	NA	NA
VEI10788.1\|3468962_3469931_+	NADH oxidoreductase hcr	NA	NA	NA	NA
VEI10789.1\|3470248_3470683_-	DoxX family protein	NA	NA	NA	NA
VEI10790.1\|3470835_3472554_+	pyruvate dehydrogenase	NA	NA	NA	NA
VEI10791.1\|3472592_3473594_+	L-threonine aldolase	NA	NA	NA	NA
VEI10792.1\|3473604_3475047_+	short chain dehydrogenase	NA	NA	NA	NA
VEI10793.1\|3475134_3476148_+	Putative nucleotide di-P-sugar epimerase or dehydratase	NA	NA	NA	NA
VEI10794.1\|3476193_3477036_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	8.3e-06	31.2
VEI10795.1\|3477023_3478163_-	Bacteriophytochrome cph2	NA	NA	NA	NA
VEI10796.1\|3478528_3478801_+	protein of uncharacterised function DUF1471	NA	NA	NA	NA
VEI10797.1\|3479100_3480288_+	Long-chain fatty acid transport protein	NA	NA	NA	NA
VEI10798.1\|3480434_3480950_+	probable lipoprotein	NA	NA	NA	NA
VEI10799.1\|3481110_3481905_+	arginine transporter ATP-binding subunit	G9BWD6	Planktothrix_phage	2.3e-29	36.2
VEI10800.1\|3481924_3482656_+	ABC transporter arginine-binding protein 2	NA	NA	NA	NA
VEI10801.1\|3482662_3483379_+	arginine transporter permease subunit ArtQ	NA	NA	NA	NA
VEI10802.1\|3483378_3484047_+	arginine transporter permease subunit ArtM	NA	NA	NA	NA
VEI10803.1\|3484226_3484958_+	cationic amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
VEI10804.1\|3485021_3486494_-	Osmosensitive K+ channel histidine kinase KdpD	W8CYF6	Bacillus_phage	1.0e-27	34.5
VEI10805.1\|3486490_3487207_-	Putative response regulator	W8CYM9	Bacillus_phage	2.7e-37	37.6
VEI10806.1\|3487284_3488412_-	23S rRNA methyluridine methyltransferase	A0A2K5B251	Erysipelothrix_phage	9.3e-21	23.9
VEI10807.1\|3488454_3488943_-	Putative inner membrane protein	NA	NA	NA	NA
VEI10808.1\|3489001_3489847_-	putrescine transport system permease protein potI	NA	NA	NA	NA
VEI10809.1\|3489843_3490797_-	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA
VEI10810.1\|3490807_3491941_-	putrescine transport ATP-binding protein PotG	G3M9Y6	Bacillus_virus	8.5e-30	34.9
VEI10811.1\|3492064_3493177_-	extracellular solute-binding protein	NA	NA	NA	NA
VEI10812.1\|3493507_3493993_-	putative sensory transduction regulator	NA	NA	NA	NA
VEI10813.1\|3494081_3494984_-	Ribosomal protein S6 glutaminyl transferase	A0A1D7SR78	Cyanophage	1.2e-34	33.3
VEI10814.1\|3495050_3495773_-	Oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
VEI10815.1\|3495756_3496047_-	Protein of uncharacterised function (DUF1418)	NA	NA	NA	NA
VEI10816.1\|3496238_3496502_+	Glutaredoxin 1	A0A2I7SAE2	Vibrio_phage	1.6e-27	71.8
VEI10817.1\|3496508_3496892_-	Inner membrane protein	NA	NA	NA	NA
VEI10818.1\|3497158_3498844_+	putative transporter	NA	NA	NA	NA
3498995:3499019	attL	NA	NA	NA	NA
VEI10819.1\|3499085_3499259_-	Uncharacterised protein	NA	NA	NA	NA
VEI10820.1\|3499416_3499632_-	phage transcriptional activator, Ogr/delta	Q53ZE7	Salmonella_virus	3.6e-22	70.8
VEI10821.1\|3499699_3500797_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	5.3e-178	90.2
VEI10822.1\|3500793_3501279_-	phage P2 GpU family protein	E5G6Q2	Salmonella_phage	6.5e-72	91.3
VEI10823.1\|3501275_3504350_-\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	81.0
VEI10824.1\|3504476_3504779_-\|tail	putative phage tail protein E	A0A1S6KZZ9	Salmonella_phage	4.0e-43	96.0
VEI10825.1\|3504833_3505349_-\|tail	major tail tube protein	A0A1S6L002	Salmonella_phage	1.9e-90	97.1
VEI10826.1\|3505358_3506531_-\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.1e-210	93.6
VEI10827.1\|3506664_3507066_-\|tail	tail assembly chaperone gp38	U5P083	Shigella_phage	4.8e-20	42.0
VEI10828.1\|3507067_3508573_-\|tail	phage-related tail fiber protein-like protein	A0A1S6KZZ8	Salmonella_phage	1.3e-99	84.9
VEI10829.1\|3508569_3509175_-\|tail	putative phage tail protein	E5G6N9	Salmonella_phage	1.5e-110	93.5
VEI10830.1\|3509167_3510076_-\|plate	baseplate assembly protein J (GpJ)	A0A1S6KZY6	Salmonella_phage	1.8e-147	92.7
VEI10831.1\|3510062_3510422_-\|plate	Phage baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	1.7e-53	90.8
VEI10832.1\|3510418_3511024_-\|plate	phage baseplate assembly-like protein	E5G6N6	Salmonella_phage	1.8e-103	94.8
VEI10833.1\|3511096_3511996_+	Protein of uncharacterised function (DUF2971)	NA	NA	NA	NA
VEI10834.1\|3511996_3512443_-\|tail	phage tail-like protein	A0A1S6L001	Salmonella_phage	1.5e-62	85.1
VEI10835.1\|3512435_3512867_-\|tail	tail fiber protein	A0A1S6KZY0	Salmonella_phage	1.2e-64	85.1
VEI10836.1\|3512962_3513391_-	putative regulatory protein	A0A1S6KZX8	Salmonella_phage	2.0e-56	82.1
VEI10837.1\|3513387_3513903_-	phage lysozyme	E5G6N1	Salmonella_phage	2.9e-94	98.8
VEI10838.1\|3513883_3514099_-\|holin	phage-holin-like protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
VEI10839.1\|3514102_3514306_-\|tail	putative phage tail protein	E5G6M9	Salmonella_phage	3.8e-34	100.0
VEI10840.1\|3514305_3514770_-\|capsid	capsid completion protein	A0A1S6KZW8	Salmonella_phage	2.5e-81	93.5
VEI10841.1\|3514863_3515514_-\|terminase	small terminase subunit	A0A1S6KZX1	Salmonella_phage	4.6e-113	98.6
VEI10842.1\|3515517_3516579_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.4e-191	97.7
VEI10843.1\|3516595_3517429_-\|capsid	capsid scaffold-like protein	E5G6M5	Salmonella_phage	1.9e-124	96.0
VEI10844.1\|3517560_3519339_+\|terminase	terminase, ATPase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	94.4
VEI10845.1\|3519338_3520376_+\|portal	PBSX family phage portal protein	A0A1S6KZW5	Salmonella_phage	5.7e-190	94.8
VEI10846.1\|3520422_3521349_-	Uncharacterised protein	NA	NA	NA	NA
VEI10847.1\|3521350_3522406_-	Protein of uncharacterised function DUF262	A0A0R6PKN1	Moraxella_phage	3.8e-16	27.4
VEI10848.1\|3522673_3522859_-	levan regulatory protein RlsC	A0A1S6L006	Salmonella_phage	7.3e-08	47.5
VEI10849.1\|3522974_3525356_-	bacteriophage replication gene A	A0A1S6L028	Salmonella_phage	0.0e+00	88.3
VEI10850.1\|3525375_3525603_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.3e-25	76.0
VEI10851.1\|3525602_3525839_-	corresponds to STY3665 from Accession AL513382: Salmonella typhi CT18	E5G6L6	Salmonella_phage	3.7e-12	61.9
VEI10852.1\|3525906_3526248_-	putative prophage protein	E5G6L5	Salmonella_phage	3.3e-46	82.3
VEI10853.1\|3526211_3526412_-	Protein of uncharacterised function (DUF2724)	A0A1S6L005	Salmonella_phage	1.1e-22	75.8
VEI10854.1\|3526419_3526929_-	phage regulatory protein	A0A1S6L008	Salmonella_phage	7.6e-79	87.6
VEI10855.1\|3526961_3527183_-	regulator for prophage	NA	NA	NA	NA
VEI10856.1\|3527278_3527869_+	bacteriophage CI repressor	A0A1S6KZZ7	Salmonella_phage	3.3e-41	42.2
VEI10857.1\|3527893_3529888_+	Predicted ATP-binding protein involved in virulence	NA	NA	NA	NA
VEI10858.1\|3529959_3531012_+\|integrase	phage integrase family protein	A0A218M4I3	Erwinia_phage	1.3e-104	55.3
3531087:3531111	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134475

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection