CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134476	Trueperella bialowiezensis strain NCTC13354 genome assembly, chromosome: 1	4 crisprs	WYL,DEDDh,DinG,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas4	0	16	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134476_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134476_1

308691-308764

Orphan

Consensus_repeat	Method
TTATTGCTGTAATAGCAGAAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134476_1

>merge|LR134476|1|308691-308764|CRISPRCasFinder
TTATTGCTGTAATAGCAGAAACGAAGAGGTTTACCGGGCTCGAGTCCCGCATTATTGCTGTAGTAGCAGAAACG

>LR134476|1|1|308691-308764|CRISPRCasFinder
TTATTGCTGTAATAGCAGAAACG	AAGAGGTTTACCGGGCTCGAGTCCCGCA
TTATTGCTGTAGTAGCAGAAACG

Protein	Signature genes	Signature genes Name	Protein_function
LR134476.1\|VEI12605.1\|303090_304623_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
LR134476.1\|VEI12619.1\|320313_321021_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|184523
LR134476.1\|VEI12604.1\|301696_303094_-\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|223841
LR134476.1\|VEI12611.1\|309315_310551_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|176459
LR134476.1\|VEI12607.1\|306490_306880_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134476.1\|VEI12616.1\|316367_317579_+\|D-3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
LR134476.1\|VEI12614.1\|312923_313949_-\|PAC2-family	unknown	unknown	gnl\|CDD\|378251
LR134476.1\|VEI12601.1\|297846_299076_-\|Cell-division-protein-FtsW	unknown	unknown	gnl\|CDD\|274232
LR134476.1\|VEI12608.1\|306876_307878_-\|Ribosomal-RNA-small-subunit-methyltransferase-H	unknown	unknown	gnl\|CDD\|234597
LR134476.1\|VEI12606.1\|304600_306481_-\|Peptidoglycan-synthase-FtsI-precursor	unknown	unknown	gnl\|CDD\|223839
LR134476.1\|VEI12609.1\|308014_308446_-\|cell-division-protein-MraZ	unknown	unknown	gnl\|CDD\|234728
LR134476.1\|VEI12617.1\|317655_319530_+\|Long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235531
LR134476.1\|VEI12618.1\|319626_320097_-\|Transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
LR134476.1\|VEI12615.1\|314121_316356_+\|Helicase-IV	unknown	unknown	gnl\|CDD\|226482
LR134476.1\|VEI12612.1\|310623_311517_+\|spermidine-synthase	unknown	unknown	gnl\|CDD\|179854
LR134476.1\|VEI12603.1\|300610_301696_-\|Phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
LR134476.1\|VEI12610.1\|308852_309227_-\|Protein-of-uncharacterised-function-(DUF3040)	unknown	unknown	gnl\|CDD\|378610
LR134476.1\|VEI12613.1\|311517_312924_-\|D-galactarate-permease	unknown	unknown	gnl\|CDD\|349949
LR134476.1\|VEI12602.1\|299072_300614_-\|UDP-N-acetylmuramoylalanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|179297
LR134476.1\|VEI12600.1\|296734_297847_-\|UDP-N-acetylglucosamine--N-acetylmuramyl--(pentapeptide)-pyrophosphoryl-undecaprenol-N-acetylglucosamine-transferase	unknown	unknown	gnl\|CDD\|234825

Protein	Function_ID	Function_description	E-value
LR134476.1\|VEI12605.1\|303090_304623_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
LR134476.1\|VEI12619.1\|320313_321021_-\|Uncharacterised-protein	gnl\|CDD\|184523	PRK14125, PRK14125, cell division suppressor protein YneA; Provisional.	3.94235e-07
LR134476.1\|VEI12604.1\|301696_303094_-\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	4.00386e-130
LR134476.1\|VEI12611.1\|309315_310551_-\|DNA-polymerase-IV	gnl\|CDD\|176459	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases.	1.71053e-146
LR134476.1\|VEI12616.1\|316367_317579_+\|D-3-phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
LR134476.1\|VEI12614.1\|312923_313949_-\|PAC2-family	gnl\|CDD\|378251	pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits.	2.96453e-27
LR134476.1\|VEI12601.1\|297846_299076_-\|Cell-division-protein-FtsW	gnl\|CDD\|274232	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW. This family consists of FtsW, an integral membrane protein with ten transmembrane segments. In general, it is one of two paralogs involved in peptidoglycan biosynthesis, the other being RodA, and is essential for cell division. All members of the seed alignment for this model are encoded in operons for the biosynthesis of UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein (peptidoglycan). The FtsW designation is not used in endospore-forming bacterial (e.g. Bacillus subtilis), where the member of this family is designated SpoVE and three or more RodA/FtsW/SpoVE family paralogs are present. SpoVE acts in spore cortex formation and is dispensible for growth. Biological rolls for FtsW in cell division include recruitment of penicillin-binding protein 3 to the division site. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.35382e-99
LR134476.1\|VEI12608.1\|306876_307878_-\|Ribosomal-RNA-small-subunit-methyltransferase-H	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	1.68016e-142
LR134476.1\|VEI12606.1\|304600_306481_-\|Peptidoglycan-synthase-FtsI-precursor	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	7.65631e-132
LR134476.1\|VEI12609.1\|308014_308446_-\|cell-division-protein-MraZ	gnl\|CDD\|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	9.40735e-62
LR134476.1\|VEI12617.1\|317655_319530_+\|Long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|235531	PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.	0
LR134476.1\|VEI12618.1\|319626_320097_-\|Transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	1.2755e-75
LR134476.1\|VEI12615.1\|314121_316356_+\|Helicase-IV	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	3.49959e-71
LR134476.1\|VEI12612.1\|310623_311517_+\|spermidine-synthase	gnl\|CDD\|179854	PRK04457, PRK04457, polyamine aminopropyltransferase.	1.37713e-13
LR134476.1\|VEI12603.1\|300610_301696_-\|Phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	1.06214e-155
LR134476.1\|VEI12610.1\|308852_309227_-\|Protein-of-uncharacterised-function-(DUF3040)	gnl\|CDD\|378610	pfam11239, DUF3040, Protein of unknown function (DUF3040). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.	9.54026e-24
LR134476.1\|VEI12613.1\|311517_312924_-\|D-galactarate-permease	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	9.57582e-25
LR134476.1\|VEI12602.1\|299072_300614_-\|UDP-N-acetylmuramoylalanine--D-glutamate-ligase	gnl\|CDD\|179297	PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.	3.023e-143
LR134476.1\|VEI12600.1\|296734_297847_-\|UDP-N-acetylglucosamine--N-acetylmuramyl--(pentapeptide)-pyrophosphoryl-undecaprenol-N-acetylglucosamine-transferase	gnl\|CDD\|234825	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional.	5.23189e-126

>LR134476.1|VEI12609.1|308014_308446_-|cell-division-protein-MraZ
MFLGTYEPKLDDKGRLILPAKYRAELQGGLVMTRGQEHCLYIFPMAEFESMLERLNQAPMTSKEARTYKRVFLSGANDQIPDKQGRVTIPVALREYAGLQRDVAVIGSGNHVEVWDLESWNTFLDASESEFADREEELIPGVF
>LR134476.1|VEI12608.1|306876_307878_-|Ribosomal-RNA-small-subunit-methyltransferase-H
MLTADNDALHVPVLTRTVIDLLAPALSGESALLIDCTLGMGGHAEAFLAEFPNVTVVGIDRDPQAIELASARLERFGERFRAVHATYDDVDLVASDAGGYADAILMDLGVSSLQLDAEERGFSYSVDAPLDMRMDSSGGMSAKDLLATASAGEIARILRVYGEEKFASRIADAIVRRRVNEPLTRTGELVDIVRESIPAAARRTGGNPAKRTFQALRIAVNDELAVLEAALPRAIESLRVGGRIAVESYQSLEDRIVKEAFAKGATSTTPAGLPVELETHKPYLRQLTRGALKAPDAEIARNPRSASVRLRAVERVSPTPPHMFNPQNYRGVR
>LR134476.1|VEI12607.1|306490_306880_-|Uncharacterised-protein
MSTAAEQQRQIAPNYRPVIQAPGLSVVPTPAPARSFISTVFVCIGLVVGAVVGAFHLNTLMIQGAYDVKNISVELNEMVAREATLKKDVLGLSTPGELRVRADALGLVPAQGARHVNLETGVITAPAGK
>LR134476.1|VEI12606.1|304600_306481_-|Peptidoglycan-synthase-FtsI-precursor
MARSQDQQSGASAYPGSPGVAEGRARAVTHKNLNILVVLTLFAALLLAIRLVFLQVIHAEALSETAREFRMRSEPLEAKRGDILDANGAVLATSLERYNVRVDQVEIENYVKRDEDRNIIGAGPAAAAKDLAPVLGMDQAELGGQLMGGEKKSKWRLIASDISPDKWREVNALGIKGIYPERFMQRQYPNGNTAGTVLGYLGQTEESEIPIGRAGVEQAYENVLAGTPGAMQYEVGPGGTVFPNAERTEVPAVDGDTVHLTIDRDLQRATQDAVDEVVAAQGAEWGTAVVIEVGSGRVLALADSNAPDPANLSATDPKHWNSRAVSAIVEPGSSGKVITYASAINEGAVGPLDLFTVSTPMQMPNGQVIRDNDPHPPERLTVAGTLAESLNTGMVQIGDLVPDEVRYQYLVDFGLGQKTGIELPGEQAGMLHPLESWGPRERYTTMFGQSWSATTLQLGQMMSVIANRGVYIPLHIVDGVESIDGEYTPTVVGESRQVVTEETADTMLQMMQAVTDPYSTGWRARVDGYNVAGKTGTAQVPDASGALTKRAGTFVGTIPAEDPQIIFASIVYNAAGPGYGGDTAAVVFSKTAEFAMRQQKIPPSSVPLVRLPWNEEELANGVPRAS
>LR134476.1|VEI12605.1|303090_304623_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MEFLVRPKNSPQVALSDVGRALGLPVQELNVCGATAVSGVSADNRRIRPGDVFIARRGAKVHAATFAREAIAAGARAVVTDAEGAHIIGDADVPVLVVGDPARSAGVAAAAVYGNPAAQLTAFGVTGTNGKTSTAFMIDHILRKLGRTTGLIGTVAVRIGDLELASTLTTPQPADLQAMLATLVENGGTDLVMEVSSHALAQGRTEPMRFDVAGFTNLTHDHLDYHGTLEEYFAAKATLFDSDHCERAVVLVDDDAGQRLYDTLATERPGAAVSLSVTGLDADWSVTELRAEGAVQRFTLAGPGGSLETCTQLAGMFNVANAALAIIMVCEAGIPLAQIGQALGQEGVSPVIPGRMEVVGDKPYTVVDFAHNTDALDKAMVALHGVRPGKLIVVTGSAGERDREKRPQMAAAVARHADHLIVTDDDPHGEDPAQIRREVITGIPDGFSWEEIPDRAEAIHGAIRQAGDDDVVLIAGRGHETIQDVAGVDVEIDDRVIARDALARRKVDGT
>LR134476.1|VEI12604.1|301696_303094_-|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MIPISLQQAADDARGHLEGASSVEVTGVVTDTRQISGSELFVAIKGERVDGATLAGSAIEAGAAGVLTSDLESALASGAPRERVIVVPDPVIALGHLARESLRRARAENPALKVVAVTGSVGKTTTKDLLAALLAIRGPIIAPPGSFNNEIGLPLTVLRAGTDTATLVLEMGADKVGNIEYLTDIAPPDVSVVLAVARAHLGEFGGIDNVARAKSELVSGTLPGGTVILNGADERVRAMADLANGPVSFFGVHGLPGVYAANVKLDDAGHADFELVTARGRAHVTLKLVGEHHVANALAAAAVADSFGIDPGYIADVLGATGPASPHRMAVTEKSGMTIIDDSYNANPESMRAGLDALDDLGEGRRRIAVLGAMLELGEQSAAEHAAIGEYAAKSGVDVVVTIGPGTEALAASAKDNGITVYSAEADTALDVLSPIMREGDVILLKGSNGSGVWRVAETLLGEDC
>LR134476.1|VEI12603.1|300610_301696_-|Phospho-N-acetylmuramoyl-pentapeptide--transferase
MLAILIALATSLLISLFGTPAFVKFLRARSYGQYIREDGPTTHLVKRGTPTMGGIIIIIATVMGYVMANVLSQRGPNASGILLLGLMVGLGFIGFLDDYAKIRNERSLGLTPMGKIIGQGVVGIAFAVGALQFKNDLNRTPASMRISIVRDTQISLAFAGVAIGVVLFIIWANFLITAWSNAVNLTDGLDGLAAGAASIAFGAYTILTIWQSYQSCQSVVNPTPGCYDVRDPRDLAIICAAIVGACLGFLWHNTSPAAIFMGDTGSLALGGAFAGVSILTKTQFLAVLIGGLFVIIVFSNIIQVGSFKLTGKRVFKMAPLHHHFELKGWKEVTIVVRFWLIEALLAAAGMGLFYAEWLAQR
>LR134476.1|VEI12602.1|299072_300614_-|UDP-N-acetylmuramoylalanine--D-glutamate-ligase
MTRTIPGAAGLAGRRVAVLGLGISGRAAVDVLRGKTQAIVSVWDGDAGKRELYPELPGGFGLQPPALMDELLAWQPDIVVIAPAFAEVGVEWTRLREAGIPVWSEIELAWQLRAQGEDGRYAPWLCVTGTNGKTTTVSMLASILAQAGLGGAPVGNVGNPAVSAVSDTGPNAPGAFALELSSFQLYATYSMRPAGAICLNLSDDHLEWHDGRESYRAAKGRIYDGVTAARVYPAGDTVVEGMVLDTTTRRPKTDAAQAGADSAAAPRNVGLVLDVPGPGQIGLVEDLIVDRAFVDNPAQALQLFELSDIMHLGPAGQLPVHILRDALAAAALARAIDVAPEHIAAGLRSFTAGKHRIEHVATIDGVHYIDDSKATNAHAAEASVRALERAVWIVGGLAKGAEFHELVAKVTPNVHAVVVIGTDQEPWKAALAEFAGPVHYVDPEASDPMEQAVAQASQWAKPGDTVILAPACASMDQFVSYGDRGEKFAAAVGALSSSRGSHAGGEAEGGDDR
>LR134476.1|VEI12601.1|297846_299076_-|Cell-division-protein-FtsW
MSEDVIVNEQREQRDAIRTGLIVVIVSTVLLVAFGIMMVSSATAPSTVGAANNSQESAPLLSNAASQVIFAIIGAIVCFVLSRIPYTYLKGWPAHAAFIAALLLQFLLLAIGKEVGGNKNWIGIGPFSIQPSEFLKLATVVWLAYMLSSLTLDQMRDWRQFRWPAAGAIVALGGIVVISRDMGTALIFVLIVAGMFWIAGINRKILSGFLVCGVIAAALFIAVSANHRQRILSFIPNLFTLPDTHAPTQAEFAQFAFGTGGLFGAGIGAGKEKWQDLPEPHTDYIFAVIGEELGLFGALIVIILFLALGWGLYTIAVHHPERYGQLLVSGAGLWLCGQAFANMLVVTGLLPVFGVPLPFISYGGSSMLATLAMVGIVIGCARGVPGVRANERVRGRLAHKISSLVRRPE
>LR134476.1|VEI12600.1|296734_297847_-|UDP-N-acetylglucosamine--N-acetylmuramyl--(pentapeptide)-pyrophosphoryl-undecaprenol-N-acetylglucosamine-transferase
MANIVLAGGGTAGHVNPLLATANAIKEEHAGCHVVAVGTDDGLETTLVPQAGVALETIERVPLPRSISLDIARLPFRMRQATAAAMSILDRHKADVVIGFGGYVSTPVYLAAKKSRIPVVVHEGNARPGLANKVGARFAATVALTFPSTPLRAKKGITVCVGLPLKREIERLAGHPGGRSARRVEAAARYGLDPDKPIMLVTGGSSGAQHLNEVFAQSATDILDAGIQVIHVTGRDKDGPVRERVSDPRYAIVDYVDDMETAYSAADLAVSRAGAGMVAELSALGIPAVFVPLPIGNGEQALNARDVVNAGGGIMIDNKKLTPDAVRDRIIPLFEGDTLEVMSARSTGVSPLNAASRLAGIALHLAEAVR
>LR134476.1|VEI12610.1|308852_309227_-|Protein-of-uncharacterised-function-(DUF3040)
MALSEYERRMLEKLEEQLLDDDPKLAESLASKKPTATQTAVSPKNLVIGLIVAVVGLLIVLGGVAAEIIVVGVLGFLVVFGGLWYLSEGFTRVEAPADSGPSPRKSRSSFMEQQLEEWRKRQQG
>LR134476.1|VEI12611.1|309315_310551_-|DNA-polymerase-IV
MSRAPRSEEAKRNWGSDDSQTNILHVDMDAFFVSVELLTRPDLVGKPVAVGGQERGVIAAASYEARAYGINSAMPVAQAKRLCPHLIIISPDHRKYADVSARIMQILDDVTPRVEPISVDEAFLDVSGARKIFGSPVQIAKHIRRTIREQENVPASIGIASSKHVAKIASAHAKPDGYLLIPHDQTLNFLHGLPVGALWGVGPVSRDKLERKGVRTIGDLAALGEHRLRRLLGDAAGTQLYALAMGHDPRQVTPDVVEKSISREQTFFDPIMSRSDAERMLLHLSDDVARRLRAADFVSWTIGIKVRSAEDFSTISRSVTLGAPTDLTHEIYDTARRLLDEVDLPAGGLRLIGVKAENLARPSDGVQIQIGDDGRRGKAELAMDLVRMKFGGASLKRGSLIGEDDDPRSLS
>LR134476.1|VEI12612.1|310623_311517_+|spermidine-synthase
MWAVVAFGVVSAAGYTGRMARQTFPFSVRTALSSIEVDRTDNLLTIYVDGVESSAVDLADPSYLEFEYMQHIEIAVNALFGEGQPIRALHLGGAGCALARAFEARRPNSRQLAIEIDGELASLVREWIDLPRAPRLRIRCEDARTTLDTNKGSWHVIVRDTFASGRIPAHLTTVEAHAKASGLLTDDGVYALNIAGEAGLAPVYREVRALGESFDHIAAISDPAIMKGRRFGNVIVLAAHRPLPLAEISARVRRLPLPTIVVPHDHLVEAAIGARLVHDRDVGWPPSSKAADSSPSA
>LR134476.1|VEI12613.1|311517_312924_-|D-galactarate-permease
MTRHKVALFVWLMAVAVYAVAVAGRTSFGIAGLTAIDRFTIDAATLSLFTIVQVGVYAGAQIPVGLLLDRLGPRILLSGGALILAVGQLGMAWADSLGLALAARFFIGLGDATAFTSVIRIIPSWFSPRRAPLFTQLTGIVGGLGQFISSVPFAYVLANVGWTPAFAALAVFGLGVSALAFVFVRDTPSQWTYSTIDVPDAATPADSAARQGKQEIEARPDGATRSREVPHVAGRDGVESASISQLVRDPEVWLGFWTHWLGNFPQTVFLLLWGVPFLQIHQEMSQAQASALLLVVTIAGMVFGPVIGELTARHSKRRVWLVNAIAIMLATTWTAVLLAPAPAPMWLIIALLIVLAASGPASSIGFDFARTAAPARRLGMATGLVNMGGFTAALLTAGAIGVVLDRSSGGAPLDAGDFKLALATQAIPWLFGMFMLDRCRRKARLRDAKRGIVVAPVRDVLERYAVRR
>LR134476.1|VEI12614.1|312923_313949_-|PAC2-family
MAEIFHLDEIAKDLQVDTLVINFRDSLVDAGNTCQTINATVETLEGESIGRFNSDLLYDYRAQRPIVTYGDGRLRDILMPEMILALCTDVHGKNFLYLTGEEPDFRWNEIASTIVKIVKHFNVQTTFSFAAMPAPVPHTRPVDMLIRSTKPDGQYPVVKGMAQHHGELTDVFEFKAEEEGLAVVNIRVRVPFYLARGDDPFFAGALAAVKMLATCGGPTFPLGDLEQLEDAQRKAISQLQLEGSDFAEVLAKLEEDYDTSGVGYITNDDATPTIPSSEEIGDAVEQFLALQNSSPLDLLNKPKQDNHVPKDPTLFDLSSRHADSDHEQRQDGAHDGEETEE
>LR134476.1|VEI12615.1|314121_316356_+|Helicase-IV
MTQDNSAIERAIAEEQVFVSTAYRALDAQRDYYTEQLARVRAQGGTGTPGAVSERDSFATHYEDNLIRLRNVENRLVMGRLDHTDGEVTHIGRMTLRGEDTSILLTDWRAPQSEPFYQATAAHPGDIVRRRHIQTRFREVTGIEDELLVSDAADSSDLNLIGEGALMAAMSGAREGKMGDIVATIQTEQDRIIRADSAGILVVQGGPGTGKTAVALHRAAYLLYTHRERLSRSGVLIIGPSPVFLRYIDQVLPSLGESDVVSTTIDQLVPGVVVGAQESAEVAQIKGRPIWATFAKRAVRKIVQKPLKEPVSFKINGTRVTLTPDMVDDAQRRARRSGKPHNQAREVYARHLVNLLAGQLATQMKTTVEESDWLIADVAGSIDARREINLRWLPTSAQGLLERIYHWPELLERIAPELTARERELLRRERGSALTSADVPIIDELAELLGPFASDSDKRERAARVEEQRQLGNYVAQTMDAMDLGGGIVTSQMMTERISDRPSSQTLAERASADRSWTYGHVVVDEAQELSPMQWRMIARRNPAKSMTIVGDLDQRPAGAPQGGWDEALGALADFHRVDQLTISYRTPASVLNVAREVMLRAGYNVGQMRAARDLPSAYRVTQGGTNELVDLVVRAAKEQDAEFGIGHGSIGVITSRSLHTKVGDLLAAAPDLTSWTLDRTGSEISARIHVLTAGMAKGLEYDVVVLVEPASVLRDGPGDLYVAMTRPTRRLDVLYQDQLPAGM
>LR134476.1|VEI12616.1|316367_317579_+|D-3-phosphoglycerate-dehydrogenase
MDVTRILLLENPHSCADDIFARYGVEVVRIAGSLAEDELIEALDGVDMLGIRSKTNVTRRVIEASPRLAAIGAFCIGTNQIDLEAASDHGIAVFNAPYSNTRSVVELAIGELISLVRQIPAKNAALHQGVWEKTAAGSHEVRGKTLGIIGYGSIGSQLSIVAEALGMKVIFHDIAERLALGNAVPVPLDELLESADVVSLHIDGRPENTGYFDSEKFAKLKDGAIVLNLARGHVMNLDALREAVVSGRVAGAAVDVFPSEPLANGDPFSSTLAGLSNVILTPHIGGSTLEAQESIGQFVAMKLMNYWRKGSTDMSVNIPNIAASPTAESLHRVVWFHWNTPGALADVNRLFAEQHVNVTFQSLATGGEYGYMVTDTATDIPDSIIDELAHAKAHIRLRLLTRE
>LR134476.1|VEI12617.1|317655_319530_+|Long-chain-fatty-acid--CoA-ligase
MNQMDLAHSHYLDGVATEIEPVTHTVDHLLFSAAKDFPERIAIDFLGREYTYAEVLDEVSRAAQVLKMVGVRRGDVISLILPNCPQHYVAFYAAMSLGVTVAEHNPLAPRAQIDSQIELVGSKVVIGWEQTLEKLIVDGDFKGRTYLAVNLTKALPTKSQWLLKLPVKAARQQRNKLRGKVPAGVHSWDNQVKHNAPLDLSREEGPDVDSLAVLLMTGGTTGTPKAVQLTHRNLLSNTRQVDYWLKDFERGTETVGAVLPFFHAFGLQLSMLVCVNMAATQVMTPTFDVDILFAAHKRHPITFFGGVPPMFQKILDAVDSGKSADLSSIRYAVCGAMPLDPELAARWEEKAGLIIEGYGMTEASPVISGSPVSERRRPSTLGLPFPSTEVKIVDQDDPSIELGEGEIGELCARGPQVFTGYYKNPEETANALRDGWLHTGDLARWDDGFLIMADRRKEMIINSGFNVYPSEVESAVRDMPGVVDVAVVGMPTDSFSESVVAALVLEPGATVDLAAVRKWTEDKLSHYAMPKSIAIFDDLPRSQLGKIMRRNVRERLENFELVSGQWRERAAAASRETAEKLDEYYTAVKERAATAKSSLSALSAHSPARGSDKQQKNKNGEDTQ
>LR134476.1|VEI12618.1|319626_320097_-|Transcriptional-repressor-NrdR
MNMYCPFCHHEDSRVVDTRTSDDGQIIRRRRECPACLRRFSTQETATLMVRKRSGTTEPFSREKIISGVGRACQGRPVTRDQLAVLAQTVEEKLRDTGAAHIDSQEVGLAILEPLRDLDTVAYLRFASVYSNFDSLDDFDEAIRQLREYDADQHAE
>LR134476.1|VEI12619.1|320313_321021_-|Uncharacterised-protein
MTAIQAQTRMDVRGRRRLRLAANSGRKLEARNESAVRGRAVRPDRPHSHENRLYAVPSADSLARIVSPVTWSKRPSLRSGDQLPAGAKKQLRRKGRMAAAAGGASRDQAVLVKQSSRGYTAPISRMSRVHSKPARASQTAVRFHEQLAQGVLQTTLFIFALVALFAIGMALATLLGLGVQPGEAITVLPGDTLWSLASAVEADVPTSKIVSDIIALNGLEGPEIIDGMKLMLPAY

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Crispr_ID: LR134476_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134476_2

521993-522067

Orphan

Consensus_repeat	Method
CCATTATTGCTAAATAAGCAGAAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LR134476_2

>merge|LR134476|2|521993-522067|CRISPRCasFinder
CCATTATTGCTAAATAAGCAGAAATGAAAGGGTTGGGAGCCCTCGAGTCCCCCATTACTGCTAAATAAGCAGAAA

>LR134476|2|2|521993-522067|CRISPRCasFinder
CCATTATTGCTAAATAAGCAGAAA	TGAAAGGGTTGGGAGCCCTCGAGTCCC
CCATTACTGCTAAATAAGCAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
LR134476.1\|VEI12791.1\|529150_529951_+\|Cell-division-control-histidine-kinase-pdhS	unknown	unknown	gnl\|CDD\|225115
LR134476.1\|VEI12788.1\|525641_526634_+\|thiamine-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|270262
LR134476.1\|VEI12781.1\|515292_519894_-\|2-hydroxyglutaryl-CoA-dehydratase-component-A	unknown	unknown	gnl\|CDD\|226108
LR134476.1\|VEI12779.1\|512193_513825_+\|Phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
LR134476.1\|VEI12776.1\|507929_509378_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134476.1\|VEI12789.1\|526620_528069_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|224099
LR134476.1\|VEI12782.1\|520088_520706_+\|putative-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380054
LR134476.1\|VEI12794.1\|532307_533813_-\|Inosine-5'-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|376340
LR134476.1\|VEI12780.1\|513905_515078_+\|Acetate-kinase	unknown	unknown	gnl\|CDD\|234680
LR134476.1\|VEI12778.1\|511085_512039_-\|Ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|211332
LR134476.1\|VEI12792.1\|529943_530636_+\|Alkaline-phosphatase-synthesis-transcriptional-regulatory-protein-phoP	unknown	unknown	gnl\|CDD\|223816
LR134476.1\|VEI12777.1\|509446_511012_-\|GMP-synthase-[glutamine-hydrolyzing]	unknown	unknown	gnl\|CDD\|234614
LR134476.1\|VEI12790.1\|528052_529123_+\|Fe(3+)-ions-import-ATP-binding-protein-FbpC	unknown	unknown	gnl\|CDD\|226361
LR134476.1\|VEI12787.1\|524952_525645_+\|DNA-polymerase-III-polC-type	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|181176
LR134476.1\|VEI12793.1\|530811_532227_+\|G-3-P-permease	unknown	unknown	gnl\|CDD\|340903
LR134476.1\|VEI12775.1\|505262_507800_-\|ATP-dependent-DNA-helicase-pcrA	unknown	unknown	gnl\|CDD\|273429
LR134476.1\|VEI12783.1\|520741_521173_+\|TDP-fucosamine-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LR134476.1\|VEI12786.1\|523684_524794_-\|Uncharacterized-oxidoreductase-MSMEG_1603	unknown	unknown	gnl\|CDD\|236322
LR134476.1\|VEI12785.1\|522187_523573_-\|Fumarate-hydratase-class-II	unknown	unknown	gnl\|CDD\|234779
LR134476.1\|VEI12784.1\|521174_521861_-\|D-allulose-6-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244

Protein	Function_ID	Function_description	E-value
LR134476.1\|VEI12791.1\|529150_529951_+\|Cell-division-control-histidine-kinase-pdhS	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	5.58154e-40
LR134476.1\|VEI12788.1\|525641_526634_+\|thiamine-transporter-substrate-binding-subunit	gnl\|CDD\|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.1187e-52
LR134476.1\|VEI12781.1\|515292_519894_-\|2-hydroxyglutaryl-CoA-dehydratase-component-A	gnl\|CDD\|226108	COG3580, COG3580, Uncharacterized protein conserved in bacteria [Function unknown].	1.44456e-132
LR134476.1\|VEI12779.1\|512193_513825_+\|Phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
LR134476.1\|VEI12786.1\|523684_524794_-\|Uncharacterized-oxidoreductase-MSMEG_1603	gnl\|CDD\|236322	PRK08649, PRK08649, GuaB3 family IMP dehydrogenase-related protein.	0
LR134476.1\|VEI12789.1\|526620_528069_+\|Uncharacterised-protein	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	2.24e-05
LR134476.1\|VEI12782.1\|520088_520706_+\|putative-DNA-binding-transcriptional-regulator	gnl\|CDD\|380054	pfam17920, TetR_C_16, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the C-terminal domain found in a number of different TetR transcription regulator proteins found in Actinobacteria. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain.	1.47321e-18
LR134476.1\|VEI12794.1\|532307_533813_-\|Inosine-5'-monophosphate-dehydrogenase	gnl\|CDD\|376340	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.	0
LR134476.1\|VEI12780.1\|513905_515078_+\|Acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
LR134476.1\|VEI12778.1\|511085_512039_-\|Ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	6.71761e-79
LR134476.1\|VEI12792.1\|529943_530636_+\|Alkaline-phosphatase-synthesis-transcriptional-regulatory-protein-phoP	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.17508e-60
LR134476.1\|VEI12777.1\|509446_511012_-\|GMP-synthase-[glutamine-hydrolyzing]	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
LR134476.1\|VEI12790.1\|528052_529123_+\|Fe(3+)-ions-import-ATP-binding-protein-FbpC	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.57394e-87
LR134476.1\|VEI12787.1\|524952_525645_+\|DNA-polymerase-III-polC-type	gnl\|CDD\|181176	PRK07942, PRK07942, DNA polymerase III subunit epsilon; Provisional.	1.0892e-80
LR134476.1\|VEI12793.1\|530811_532227_+\|G-3-P-permease	gnl\|CDD\|340903	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters. Glycerol-3-Phosphate Transporter (also called GlpT or G-3-P permease) is responsible for glycerol-3-phosphate uptake. It is part of the Organophosphate:Pi antiporter (OPA) family of integral membrane proteins responsible for the transport of specific organophosphates or sugar phosphates across biological membranes with the simultaneous translocation of inorganic phosphate into the opposite direction. The GlpT group belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.75041e-168
LR134476.1\|VEI12775.1\|505262_507800_-\|ATP-dependent-DNA-helicase-pcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
LR134476.1\|VEI12783.1\|520741_521173_+\|TDP-fucosamine-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.7521e-16
LR134476.1\|VEI12785.1\|522187_523573_-\|Fumarate-hydratase-class-II	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
LR134476.1\|VEI12784.1\|521174_521861_-\|D-allulose-6-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	2.52721e-79

>LR134476.1|VEI12784.1|521174_521861_-|D-allulose-6-phosphate-3-epimerase
MILNLPSLANCDLMELPEQVDELVAAGVTMFHIDLMDGHYVPNLCFPVRVISDIKQRHPHVQFDAHMMVDNPADYIDELADAGATHMAFHADATSFAVRTLSACKKRGMGAGVAINPSMPIDIIRPYVHLLDYVILMTVEPGFSGQPFLDGSLERLSELSALRAETGSDFKIEIDGGVTPELAPELVKRGADWLVTGIYVTFNHPEGITAAVKKFADQMEQAEREFRS
>LR134476.1|VEI12783.1|520741_521173_+|TDP-fucosamine-acetyltransferase
MIELASFATPELEEAFARLIPQLSTSTTPMVEEEIDELLSQEASDLILYKDDAGKIQGMLTLVTFTIPTGTRAWIEDVVVDSAARGQGAGMQLVEAALELAAKRGAKTVDLTSRPAREAANRLYQRAGFERRDTNVYRYTKTD
>LR134476.1|VEI12782.1|520088_520706_+|putative-DNA-binding-transcriptional-regulator
MTRTTETRGPAGRRGEVRNRLIEAGRELFTKKEFSAVTLREIAAKADCDAGLINYYFGGKAGLFREAMSLPHDPIEVIHEAFGDGRPGVGKRVCLAVLKLWEESTVPSYAKIYISTLLSSESTFEMFSSWVVNEMLEPMAAKLPVSNAKLRAELAFGQVIGLCSARYVFAREPLASLPREQVANIYGPLVDAVLFGKLPQTNVSP
>LR134476.1|VEI12781.1|515292_519894_-|2-hydroxyglutaryl-CoA-dehydratase-component-A
MVYRLGIDVGSTTVKAVLLDGEDIVFEDYRRHHADVRAELAKLLSDIAFEHPGIDVSAAVTGSGGMAVANVLDIPFVQEVIAETEATRRAYPDTDVIIELGGEDAKLTYLKPTPEQRMNGTCAGGTGAFIDQMASLLNTDAAGLNELAKNYETIYPIASRCGVFAKTDVQPLLNQGAAHEDLAASIFQSVATQTVAGLANGRPIRGNVMFLGGPLHFLPELRKAYERILDKVESYVTPERAQLYVAIGAAMLADENNVKQLDTMATTLREAGNAGIETNRLRPLFENDAERAEFYARHDKARVESVPTSEARGDCFLGIDAGSTTIKAVVIDEDDRIVFTHYASNEGDPVNAAVEIVTRIQNELPDTARIVRSCSTGYGEGIVQSAIGVDEGEIETMAHFRAAEYLQPGVTSVIDIGGQDMKYLRIKNGVVDSISVNEACSSGCGSFLQTFAAGMNTDVQSFAKAATESTAPVDLGTRCTVFMNSSVKQAQKEGASVADISAGLSYSVVRNALYKVIKLKDADELGDHVVVQGGTFLNDAVLRAFELLTGREVVRPNIAGLMGAFGAALTAKRHYKPDEVDQARPSSLLTVEELDGLTVETELKTCRLCQNHCNMTISKFSTGERHVSGNRCERGASLERVPAKSPIPNMYEWKYKRIFGYRRLREADAERGDIGIPRVLNMYEDYPFWFTVLTKLKFRVMISGRSNHALFEDGMESIPSENVCYPAKLAHGHIESLLSKGIKTIFYPCVSYSEETTSGQDNNFNCPIVATYPEVIRNNMERLTEEKATFISPFLSLSNREILPRRIAETFADWGVTEEEAREACEAGWEEMAAVRAEVKAKGQEALDYIRENNIKGVVLAGRPYHLDPEINHGIPELIVGLGTAVLTEDAVVENKLERPLRVRDQWSYHSRLYEAAATAGDDPDLQLVQLVSFGCGLDAITADQVQEILEGRGDVYTSLKIDEISNLGAARIRLRSLAAAVDERAERMGMDTPPESEEVLTYPAQLDAQADGDGRRRRNAIAPSQAGMVEYKKAGHIYEPVPFTKQMREDGYTILVPQMAPIHFRLLMPVLRRGGYNVKLLEKTTKENIETGLKYVNNDSCYPAIVVIGQLIDEFVAGRADPDRTAVAITQTGGMCRATNYAGLLRKGLRDAGYSQVPVIAVSAQGLEDNPGFEFTIPMLHRAIQAVTLGDLLQKVLLRTRPYQIDGNVVALYEKWDLVVREFFEYKGYSPTLGRKIGFHALIKEITREFDTVPLQDIPRKPRVGMVGEILVQYHPDANNDAVGVIEAEGCEAELPSLAQFFHNSLVTADWKYETLGSLTNRQRKLNNLALWVLQQYEKPYRRALEKSERFTAGPTIQELAEKVQEIAQLGNQAGEGWYLTADMMDMIENGTPNIICAQPFACLPNHVVGKGMFRALRQKYPQANITAIDYDPGASEVNQLNRIKLMISTAFINHKEGEQKLDLTGDVDLDLTDPSEYDPSELQGGMLGGGCGCGCAGGGVPAGAGSAGAGQSTKVGLGMPRIRVGAPSDAR
>LR134476.1|VEI12780.1|513905_515078_+|Acetate-kinase
MTVLVINSGSSSIKYQLVNPESGESIASGLVERIGEETSHLEHDYNGETTELNQPIADHGEGLRLVIDMFNDVGPKLADAGVQAVGHRVVQGGNHFSKAAIIDDEVQALIEELAPLAPLHNPANLKGIEVARELFDVPNVAVFDTAFFQSLPNESATYALDRETAEKYQIRRYGAHGTSHMFVSQKVSDILGRDDLKQIVLHLGNGASVSAVKNGKAVDTSMGLTPLEGLVMGTRTGDIDPAAVFHLARVGGMSIDEIDTLFNKKSGMKGLAGDNDMRNVNELAGKGDENAIEALEVYVHRLLHYIGAYSAVMGGLDVITFTAGIGENDNSTRASVIKRLEPFGIKLDEEKNNTRSKEPRVISTEDSTVKVMVVPTNEELSIAQQAVALL
>LR134476.1|VEI12779.1|512193_513825_+|Phosphate-acetyltransferase
MTKSVYFTAAEGNAGTRAVARVVIEQLKNDYPNLGLFRAFTNGPITADQEFIDLLELVGRSDDLERAWGTTRQAYVADEDAAMTDLVKRYTDYAHDFDAVVILGLLDGDPVNPGFLARTGRAAANLGTSVFTVFSGAMRTPNQIVDTSHLAAMEIQNENAPISAIAVTHADRKLAAAHGPEGDHTPIIYFYDDEEVKLEDRDRDIIRGAMEHGSPVVTPLSFQSSLIARARADRKRIVLPESSDERILRAADELIAREVADIILVGDADEVRSRAADLGLDLSKAEIVSADDPERIAKYATEFARLREKKGVTYDKAVETLKDLSYFATMMVHMGDADGMVSGAVNTTANTIVPSFQIIKTKPGAKLVSSCFLMLMEDRVYVYGDCAVTTNPNPEQLAGIAVSSAETAVQFGVDPRVAMLSYSTGSSGAGPDVDAVIEATKLAKEMAPDLPIEGPIQYDAAVEPKVAAKKLPGSEVAGRATVFIFPELNSGNIGYKAVQRSAGAVAVGPVLQGLNKPVNDLSRGALVEDIVNTVAITAIQAQS
>LR134476.1|VEI12778.1|511085_512039_-|Ribosomal-large-subunit-pseudouridine-synthase-A
MSRRRPRSQRRSEYQRAVRPAFRHGINATPVTLPEADFGTLGEWAEDRFGAEGARAFDRGDVFYDFSVPANAADPYRPGQRVWLFRPVPDEPAEPIILDVVHRGPRFMVVDKPHGIATIPRGMYVAKSVTIAARRQFSNDDVVAAHRLDAETAGLVLLTGEPRWRGAYQDMFAKRAVTKVYVAVAPVIDLGGGEDGWLTVDLRLEREPGALAVSVVDGEPNARTHIRLARELGDGLALYELRPISGRLHQLRATMNHLGAPIVGDPLYPTVLSLEETAARDLPTQLLATELAFTDPVDGSHVHVRTRRRLALAPDIP
>LR134476.1|VEI12777.1|509446_511012_-|GMP-synthase-[glutamine-hydrolyzing]
MSEIRPVLVIDNGAQNAQLIARRVRDAGYYSELVPHSWPAEKILAKEPLALILSGGPASVYAPGAPQLDRALLEAGIPVLGICYGFQQMTHVLGGTVEETGKQEYGQTGVQTVADSLVTGAAGQNVNVWMSHGDSVTAAPEGFTVTATSPGAKVAAFENRQARLFGVQWHPEAKHSEAGQEQIVAFLRDGAGLEPNWSASSVIDEQIAKIRKQVGDKHAIVGLSGGVDSSVAAALVHRAIGDQLTAVFVDHGLLRKGEVEQVVRDYAGARGMRILAVDESERFLSALAGVTDPEEKRKIIGREFIRSFEAAQRKLVEEAGAEGKDIKFLVQGTLYPDVVESGGGDGTANIKSHHNVGGLPDDLEFELIEPLRDLFKDEVRAIGEELGLGPKLVWRQPFPGPGLGIRIVGEITRERLDILREADAIVREELSAAGLDREIWQCPVVLLADVRSVGVQGDGRTYGHPIVLRPVSSEDAMSADWSRIPYDLLAKISNRITNEVKDINRVVLDVTSKPPGTIEWE
>LR134476.1|VEI12776.1|507929_509378_-|Uncharacterised-protein
MSQTVLESIRQVPEVDGPIPVTATSHPFCSMAHAKQPLDLAAAGYTEEEYFISGTANVYEGQSELAVKYREQPYTTRIMVRKPAAEKFSGRVYIDIYNASNGYDIEDVWRRSYEYYMAGGHVYVGVTAKPINVVSLKKFDPERYASLRWDGQKPAPLPKKVNPLKSIKGMEEGLVWDILSQLGYMVKGNRASFLADYDVTELYLTGQSQSGVYLNTYAYFFHRYVRDIYDGFLTVVGAGRMRDLRQNERLITLAGIRDQLIADSEVPFILVSAHGDINLFRSKLEILRELGADRSKIRHYEMASAPHTDPTSPLIPDNREVEKTGNRPRLLDGDYDFEVNSIKLAYYVNAALEHLHEWAVNGVEPPASLLIERDDDGDPLSDEHGNGVGGLRSPYVDVPIATYRPNEETKLSKIGFELGVNGSMEYFDGPTLAKLYASKDDYLTRFAAAVDQQVADGWLLPADAQRMVDWSRQVADELDFPA
>LR134476.1|VEI12775.1|505262_507800_-|ATP-dependent-DNA-helicase-pcrA
MSEHNMSPADRLRAKLVAAQEAQAARPSVASPAKPSVAAHGQGDPALLEGLNPQQRAAVVHDGGHLLVVAGAGSGKTRVLTTRISHLISTGRVRPSEILAITFTNKAAKEMKERLEQMIGPTARRMWISTFHSACLRILRAEHKAIGMRSTFTIYDSADSTRLMTMVVREEGIDSKAYPPKKLLRQVSDLKNEMVSAEQFARRAQDRDETVLAEAYLDYQSRLRAANAVDFDDLIMLAVQLLRNNPEIAEHYRRRFRHVLVDEYQDTNVAQYQLIRELVGEETDDPHGELTVVGDADQSIYAFRGATIRNIEDFEQDFPNATAILLEQNYRSTQNILSAANAVIANNSGRRPKRLWTDSGAGEKIVGYVADAESDEAGFVVEEIDALRDQGYTYGDVAVFYRTNAQSRALEEMFVRSGIPYKVVGGTKFYERKEIKDAIAYLQAIANPDDTVSIRRIFNEPRRGLGAKAEEAVAMHASRYGISFGAALTDVAHPEAASEAGRSEVLGLQARAEKTMREFVLMLEDLRAQAEAGAAPADILDAVMDRSNYLAVLQESRDPQDEVRVDNLAEFHSVASDFRVVNPEGTLGDFLDQVSLVADSDQIPDEDGGEGEVVLMTVHTAKGLEFPVVFVTGMEDGTFPHIRAMNSPEELAEERRLAYVAFTRARERLYISRAGSRSQWGAPQELPASRFLEEIPEETIDWRRTESAMQTLRGSASWGRSRQQRWDDDDDFAPAFGTGTGRTFGRRSASATGSRTFTPSKFGATSSAGSVSGSAGQGTPAQDKAESNAPETGGLAVGDRVRHKSFGTGKVVSFEGKGRSTIAKVTFDSGPTKRLMLRFAPLEKV
>LR134476.1|VEI12785.1|522187_523573_-|Fumarate-hydratase-class-II
MTEYRIEHDTMGEVKVPKDALYRAQTQRAVENFPISGKRLEPPHIHALAQIKRAAAIANNELGVISDERKDAIVAAADEVISGKHDDHFPIDVFQTGSGTSSNMNMNEVIATLASTDELEIHPNDHVNASQSSNDVFPSSIHIAALAALRENLYPKMEVLLASLEAKADEWKDVVKAGRTHLMDATPITLGQEFSGYAQQIRYGIERVKDTEKRLAELPLGGTAVGTGINTPEGFSQRVIELIAENTGLPFVEAANHFEAQAAQDSLVETSGALRVVAVSLVKIANDLRWMGSGPRAGIGELHLPDLQPGSSIMPGKVNPVVPEAAVMVAAQVIGNDSAIAFAGAQGNFDLLVMLPVMAQNLLESINILGNMCEVLATKTIDGAEANRERALELAESSPSIVTPLNRHIGYENAAKIAKHSVAENITVKEAALDLGFVERGEIDEETLTKALDVTTMVGDY
>LR134476.1|VEI12786.1|523684_524794_-|Uncharacterized-oxidoreductase-MSMEG_1603
MSEIDIGRGKRARVGYSFDDISVVPSRRTRDAADVSISWQLDASLLDIPILSAPMDSVTSPHTAIKIGELGGVGVLDLEGLWTRYEDPEPLFEQIAAEPAATATALMQKIYREPIKPELIVERLAQIRASGQLVAGALSPQRTQEHWRTVVNAGVDLFVIRGTTVSAEHVSSNREPLNLKRFIYELDVPVVVGGAASYTAALHLMRTGAAGVLAGFGGGATTANRRTVGVAVPMATTVADVAAARREYMDETGGRYVHVIADGQVSTSGDLVKAIACGADGVMLGTALARSTEAPGRGYHWGAEVYHKDLPRGERVEVGSVANLETIINGPSTSANGLTNFTGALRHAMAMTGYSDLKEFQRVLVSVGV
>LR134476.1|VEI12787.1|524952_525645_+|DNA-polymerase-III-polC-type
MWTTLPRAGFDTETTGVNVLADRIVTAAIIIDDGETEERYTWLADPGVEIPEGAAAIHGVTTEIAQRDGEPAEKVLSEIADILEHHMAGGNPVVAYNASYDFTLLENELRRHGIATLEDRLGGRVYPVVDPYFLDRHVDRYRRGKRTLAHLAAHYEVPADETFHEAEGDVRMTLRVLDAILEQYPQLAEMPLDVLDANQRVAYNEFQDFISRRYRRAANEPRGWPVATVQ
>LR134476.1|VEI12788.1|525641_526634_+|thiamine-transporter-substrate-binding-subunit
MRAVRSRWGRRFIRRGGLVLAVVALAITGGVALSPRPDLTVLCSNNLDSCEAVADSFSARSGHRVKILRVSTSQALERLKGAGKSSEFDVWIGGPTHAYATAEAAGLLEPLPDLPAGPSATNSWFEVYGGILSLCVAADHDVRSWEELATRPLRIAAPSPLTSGTAATFLALQHMRLPDATPYLRGVDARVVTYTDSGMAPARLVATGFADVGITFAPYCDAARARGAAVRTVFPSEGTDYEVGGAAVLAGSPRRDIAISFLKFALSAHGQHVSAEAAFQAPIASTRQPTLYEQLDGLAVPVLHTDPYLLSETLTGLVEQWEREVYHARP
>LR134476.1|VEI12789.1|526620_528069_+|Uncharacterised-protein
MRARSVAAGSLLLLGAAWLIDADALRALLSSLAVTFPVALACSIIALPITVYGRGFHRPAGTYMAGAAVAFVLIPIPAITHVLSIFLVPFSRPILVATLLLASFPVAFLVQYATFHVSATAIMLASHSTRASLCSLWRIYPGQLSRSLLGPAVVASLVMAFDPGLALAAGTSQPVFGRVILDSISYYAAPSAPGTIIVLCAIASAWLVLALAPRASSSANTDNDSSHWRFVPPRWLTILARLICTVATCVYGAIVVNLAFHVAGSHLGDAVSTLGTSLILITVSLGVASGCAAWSWWLNVSARWPLRAAHLWLAGLGLTGGGLIIAALSRGLIHMGATPLAGGAGFAGGALGIVCAQFLLAYPVFFLIMAALRERHRTTIGIAYDAGASPLRVFATVFLPATRKYWVAAWAGLASFFMTHAAPTIFVDSPAWPQLGHVIALAAGSGDHAALATFSLVGFGASVLIALAFAGFIFRRSHANRA
>LR134476.1|VEI12790.1|528052_529123_+|Fe(3+)-ions-import-ATP-binding-protein-FbpC
MPTGLSISDLRVPGRFAGSLHVSAGQVLAVVGASGSGKTTLVEAIAGLIPARGSISWNGHDISHLPPQERPTGLVSQTPVVFPAMTVAANVGFGLDDADMADHVRTARIDIALADMRITGLAARSANTLSGGQAQRTALARTLARRPQILLLDEPLAHVDSHLRPDLQEVLVGYTREHAAATIYVTHDVDEAFHVGDKIAILYRGRLLQVATPAQLYRQPSSRHVAHMLGITNIFSCYVRDSDGSGRVSVLVGEHNIHARGSAQRGQALVSFAPEAVRISPRGQIPGHVLHARFVRSHMWYNVETDVGTVHVQTDTSCELPAGSEVRLDITDAWIIPDDVVAPANSRRDDPDGPRG
>LR134476.1|VEI12791.1|529150_529951_+|Cell-division-control-histidine-kinase-pdhS
MVVAFTCLTLVCGALAIACVYLWRERRRARATAPAPAETQPLAIISHELRTPLALIRGAGELLAEESPGKLNRQQREFVSTIVTNSQLAIDIAENLVSDLRLSTTHIAVSRVDVRQIIARAVRDMRRFTDVNIEVDAPGGLLPIYADPQLIHQLVWNLVNNAVRHAGPDARIRVRVANGEAGGLHLRISDDGRGMSTEELEQLFVPFVSGSARRPGAGIGMMISKRIVDAHSGQIIVDSEIGRGTTIHVVLPHAPSERTLLDSGHG
>LR134476.1|VEI12792.1|529943_530636_+|Alkaline-phosphatase-synthesis-transcriptional-regulatory-protein-phoP
MAKPLALVVDDEEQMLAIVTFALNTQGFDTRTAGDVAQAWNLLSTTKFDLVVLDIMLPHGSGLDLTRRIRARSAHPPIMLLTALDAEHNRIAGLEAGADDYVTKPFSPRELALRAEAIYRRTATNEPPKHSFGQLVATDQGVYCGADLLPLTAREADLLTVLIRYAPKPVSRTRLLNEVWGTTSLSGGADMIKTTIYRLRRKLDHHCVDDVAIATVPSGYQLVGAQLSTD
>LR134476.1|VEI12793.1|530811_532227_+|G-3-P-permease
MAHTEGGSDRHAKSKWGVLAAPPPAPRLPKEKIDSTFRRYRASSFLGIFIGYAGFYLIRNNVSLVSGILKEYDIMNTVGIGIVANAVLFSYGLSKFFMAMLSDRANARFFLPIGLALSGLINILIGTVPALSATVGIFATVMFINGWVQGMGWPPSGRTLVQWFSTNERGTMTAIWNTAHNVGGAGVGAAAAYALHHWAASPADWTPAFWFPGAIAIVVAFIAFLLMRDNPEAMGLPPVEEWRNDPAKVEGSVEEAQGSWWHIVRTHVLTNPVIILLAVANVFVYTLRYGVLNWIPVYLTDEVGAANITSGLAGFAIYELAGIVGTLLCGWVSDKIFKGWRSGAGILFLVLTGVAIVIYWQLPQDAPLWMYYTLIGVIGGLIYGPVMLIGLQAIDLSPKYVAGTAAGFTGLFGYLLGASLASTGVGVLIHNYGWDVTYIALSVVVILAVVLMIIVGRYERRLMDDHKMRTS
>LR134476.1|VEI12794.1|532307_533813_-|Inosine-5'-monophosphate-dehydrogenase
MSADPFGLIGLTYDDVLLLPGATDVVPSEVDTTSHLTRNIRVKVPLLSAAMDTVTESRMAIAMARQGGFGVLHRNLSIADQAHQVRVVKRSESGMASDPVTISPDATVRQWDELCGQYKISGLPVVDADSKLLGIITNRDMVFIPESQWDTMKVSEAMTPMPLVTGGTHTTREEAAELLRKNKIEKLPLIDDDGRLTGLITVKDFTKSEKYPNATKDADGRLRVGAAIGYWGDAWERAVELAQAGVDALVVDTANGEAKLALDMIARIKSDSRFAGIDVIGGNIATREGAQALIDAGVDAVKVGVGPGSICTTRVVAGVGVPQVTAIQLASEACKPAGVPLIADGGLQYSGDIGKALAAGASTVMLGSLLAGCEESPGELVFVNGKQFKAYRGMGSLGAMSSRGRVSYSKDRYFQADVASDDKIIPEGIEGQVPYRGPLGSVIYQLVGGLHQTMFYTGARTIPELMERAKFVRITSAGLRESHPHDIQMTAEAPNYSSQQK

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Crispr_ID: LR134476_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134476_3

936426-936502

Unclear

Consensus_repeat	Method
GCAGAACTGCTATATAAGCAGAAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134476_3

>merge|LR134476|3|936426-936502|CRISPRCasFinder
GCAGAACTGCTATATAAGCAGAAACGAGGCCGGTTAGCGCCGTCGAGTCCAGCAAAACTGCTATATAAGCAGAAACG

>LR134476|3|3|936426-936502|CRISPRCasFinder
GCAGAACTGCTATATAAGCAGAAACG	AGGCCGGTTAGCGCCGTCGAGTCCA
GCAAAACTGCTATATAAGCAGAAACG

Protein	Signature genes	Signature genes Name	Protein_function
LR134476.1\|VEI13174.1\|941788_942280_-\|Molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|238451
LR134476.1\|VEI13164.1\|932101_932443_-\|Transcription-factor-WhiB	unknown	unknown	gnl\|CDD\|376791
LR134476.1\|VEI13169.1\|937656_938244_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-MobA	unknown	unknown	gnl\|CDD\|133000
LR134476.1\|VEI13172.1\|939905_940403_+\|Molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
LR134476.1\|VEI13173.1\|940386_941760_+\|Molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
LR134476.1\|VEI13163.1\|931879_932011_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134476.1\|VEI13158.1\|927738_928863_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|235906
LR134476.1\|VEI13168.1\|937118_937544_-\|Inner-membrane-protein-yccF	unknown	unknown	gnl\|CDD\|236975
LR134476.1\|VEI13171.1\|939412_939838_-\|Molybdopterin-synthase-catalytic-subunit-1	unknown	unknown	gnl\|CDD\|238385
LR134476.1\|VEI13166.1\|935105_936149_+\|phosphodiesterase-YaeI	unknown	unknown	gnl\|CDD\|224326
LR134476.1\|VEI13170.1\|938378_939416_+\|Probable-molybdopterin-cofactor-synthesis-protein-A	unknown	unknown	gnl\|CDD\|234672
LR134476.1\|VEI13162.1\|931418_931883_-\|putative-endoribonuclease-L-PSP	unknown	unknown	gnl\|CDD\|100006
LR134476.1\|VEI13167.1\|936815_937181_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134476.1\|VEI13176.1\|943282_945550_+\|Sulfate/thiosulfate-import-ATP-binding-protein-CysA	unknown	unknown	gnl\|CDD\|213226
LR134476.1\|VEI13161.1\|930665_931343_+\|cAMP-regulatory-protein	unknown	unknown	gnl\|CDD\|223736
LR134476.1\|VEI13175.1\|942482_943259_+\|Molybdate-binding-periplasmic-protein-precursor	unknown	unknown	gnl\|CDD\|270256
LR134476.1\|VEI13157.1\|926591_927590_-\|Flp-pilus-assembly-protein,-ATPase-CpaE	unknown	unknown	gnl\|CDD\|274798
LR134476.1\|VEI13159.1\|928904_929819_+\|Soluble-epoxide-hydrolase	unknown	unknown	gnl\|CDD\|223669
LR134476.1\|VEI13160.1\|929815_930442_-\|UV-endonuclease	unknown	unknown	gnl\|CDD\|223255
LR134476.1\|VEI13165.1\|932665_935104_+\|Penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|223815

Protein	Function_ID	Function_description	E-value
LR134476.1\|VEI13174.1\|941788_942280_-\|Molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	9.95554e-49
LR134476.1\|VEI13164.1\|932101_932443_-\|Transcription-factor-WhiB	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	7.10544e-25
LR134476.1\|VEI13169.1\|937656_938244_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-MobA	gnl\|CDD\|133000	cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.	3.63816e-15
LR134476.1\|VEI13172.1\|939905_940403_+\|Molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.5607e-65
LR134476.1\|VEI13173.1\|940386_941760_+\|Molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	1.77052e-126
LR134476.1\|VEI13175.1\|942482_943259_+\|Molybdate-binding-periplasmic-protein-precursor	gnl\|CDD\|270256	cd13538, PBP2_ModA_like_1, Substrate binding domain of putative molybdate-binding protein;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. Molybdate transport system is comprised of a periplasmic binding protein, an integral membrane protein, and an energizer protein. These three proteins are coded by modA, modB, and modC genes, respectively. ModA proteins serve as initial receptors in the ABC transport of molybdate mostly in eubacteria and archaea. After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.71478e-62
LR134476.1\|VEI13158.1\|927738_928863_+\|Uncharacterised-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	9.71736e-07
LR134476.1\|VEI13168.1\|937118_937544_-\|Inner-membrane-protein-yccF	gnl\|CDD\|236975	PRK11770, PRK11770, YccF domain-containing protein.	2.12667e-51
LR134476.1\|VEI13171.1\|939412_939838_-\|Molybdopterin-synthase-catalytic-subunit-1	gnl\|CDD\|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	4.40497e-44
LR134476.1\|VEI13170.1\|938378_939416_+\|Probable-molybdopterin-cofactor-synthesis-protein-A	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	2.34131e-160
LR134476.1\|VEI13160.1\|929815_930442_-\|UV-endonuclease	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	1.13766e-104
LR134476.1\|VEI13176.1\|943282_945550_+\|Sulfate/thiosulfate-import-ATP-binding-protein-CysA	gnl\|CDD\|213226	cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	8.20635e-64
LR134476.1\|VEI13161.1\|930665_931343_+\|cAMP-regulatory-protein	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	8.99799e-50
LR134476.1\|VEI13165.1\|932665_935104_+\|Penicillin-binding-protein-1A	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	1.04889e-136
LR134476.1\|VEI13157.1\|926591_927590_-\|Flp-pilus-assembly-protein,-ATPase-CpaE	gnl\|CDD\|274798	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.	3.21976e-22
LR134476.1\|VEI13159.1\|928904_929819_+\|Soluble-epoxide-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.58886e-28
LR134476.1\|VEI13166.1\|935105_936149_+\|phosphodiesterase-YaeI	gnl\|CDD\|224326	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only].	2.38875e-32
LR134476.1\|VEI13162.1\|931418_931883_-\|putative-endoribonuclease-L-PSP	gnl\|CDD\|100006	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	8.76281e-61

>LR134476.1|VEI13166.1|935105_936149_+|phosphodiesterase-YaeI
MARVKKFLTAGLGLGVLGAGASAIYGLAHAHSYRVRRRSLLVPHSDGEALRIVHISDAHTLARHAKRLTFLRKLGEMRPDLVVLTGDMISEDAALEPVLDALDPLLDVPGVFVFGSNDYLAPRFRNPFGYLVSPSNVGSDSSSAKTRELRWREMRAAFEERGWLNLNNQRGRLDVCGWTLDFVGVDDPHLDYDAFPAPDSEAVPASGPYARIGVTHAPYTRVLDAMVDDGCSLIFAGHTHGGQVCLPGGRALVTNCDLDTEFASGLFTWPRDDHGSAAGAGGEPDPSGQIAVLKGDGAVISHSQPGSRAAGSAWVQVSAGIGTSPYAPVRTFCPPEAIVLDVIPFRD
>LR134476.1|VEI13165.1|932665_935104_+|Penicillin-binding-protein-1A
MTLRQMIVALLSFFLLTGIGGGLMAAAALPFAATTGTVANAGARMFDDLPTDIDFTRPSEQSVILAADGSKLATFYAENRIIVASDEISQHIKNAAVAIEDERFYQHNGIDAQGLARAAMTNLMGGQLSGGSTITQQYVKNAIIEEGRISGDNTMIAKATERSISRKLNEARFAIAVENVATKDEILTGYLNLAQFGPSQWGVEAASRYFYGVSAKDVTLEQAAMLAGITQAPGKWNPVTNPEAAKQRRDVVLGQMYKLDMITREEFEAATAVTIEDMLNVTEATNGCAEAGISAYFCEYVVKDLLNSPSLGETREERTQKLYRGGLVISTTINPADQQHAYDAVVASTPVDDPSSINMALSSVEPGTGHIKAMVQNTNYGNPTPENPEDMTLNLNVGMTMGGGSGYQGGSTFKVFTLMEWLRQGNGVYDRVNANGRTFPRDSWSIRCAPGLRDDYRPTNLEGIGSGMMTVLDSTRLSVNVSYVAMANQLDMCDIVDLASDLGLERGRMAVEGDPETAEFEKSGIPFEYGETLPLMPNPAASLGSNPVTPLSMANAMATIAADGKYCKPLSFTKITDSDGNVIATNEPECRQVIDAELARQTTSVLQTVVAPNATGSRAVLSGDRPAAGKTGTANMDWHAWFMGYTPQLATAVWQGHHEGYISMFNSVINGQYHYEVYGGLYPAQTFKAFMDAALADQPIEQFTAPSKDPRSARRAPTTDPASDQQDESKEEENETPAEDTQAPPPGEAAPNLIGKSQDDAQSTALTAGYGYVTRVVDSSAPAGTVVRQVPEAGAAAATGTQIEIWISSGRG
>LR134476.1|VEI13164.1|932101_932443_-|Transcription-factor-WhiB
MTQVYEDQTWAVRAICADSDPDALFVRGSAQTDARQICFSCPVRIECLADALDSGMTFGVWGGMTERERRALLRRFPHITNWWEYLTQSDDQVATELRAGRIPRLSRRPVARK
>LR134476.1|VEI13163.1|931879_932011_-|Uncharacterised-protein
MPLLAHNTKQILDSWGKDGYELVTVIPGPNGTNPVAYMKRPIE
>LR134476.1|VEI13162.1|931418_931883_-|putative-endoribonuclease-L-PSP
MSAGPVSQRLAELGIELPEVAAPVAAYVPARQDGAQVRTSGQLPFVDGELPVCGKVGGQVTAEQAQKLARQCALNALAAAADVVGLDNLAGVVHVTGFVASTTDFTGQPGVINGASELFGDIFGADGAHTRSAVGVPVLPLDSAVEVEVTFAVR
>LR134476.1|VEI13161.1|930665_931343_+|cAMP-regulatory-protein
MELNILANVELFRDLDNDERDALLSLMSETSLKRGESLFHEGDAGDRLYVVIEGKVKLSHTSDDGRENLIAILGPGEIIGELSLFDLGARSSTVTAIAPSRFLYLSHKDMMNYIDDHPKLAKSMLRELAKRLRNTNDQMADLVFSDVPGRVAKALLDLAERFGERTPEGIYVAHDLTQEELAHLVGASRETVNKSLADFTARGWIRLEGRAVMLIQVGRLQRRAH
>LR134476.1|VEI13160.1|929815_930442_-|UV-endonuclease
MVQVEQVDGILRSLAVLYPDATTDLVHANPYELLVATILSAQTTDVRVNQVTPELFARYPDPHALAGASREDLEKILRPLGFFRAKAKSLEGLGKALVEEHDAVVPATRDELMKLPGVGRKTANVVLGNAFGIPAITVDTHVGRLTRRWGWTAHKDPVKAERDLMEIMPEDNWTIDCHRIIYHGRAVCHARAPKCGACELAELCPSAS
>LR134476.1|VEI13159.1|928904_929819_+|Soluble-epoxide-hydrolase
MPADTTCITMPGPWRHEKIQANGAQFHAAIAGEHRDDRPLVLLVHGFPQYWWAWRNQIEPLAGAGYHVVAIDRRGIGGSDKTPNSEDGLTLAFDIISVVRALGARKTVLVGHGRGGALGWSAVSMEQNLFAGLVTVSSPHPRTLHRVGMHVTLRTWRHVLASMISPLSQKGLVREDAVRSLLTEWSAPNNDGAAAQAELYAQALQLPGAAKVSLDQLRWTWRSQHSPTGRKYLRESANAIHVPVLAVRGEQDPLLPDRAWNKDLEFAFGPYRKMRIADAGHFVPEEQPDVFTKVLLDFLATIEL
>LR134476.1|VEI13158.1|927738_928863_+|Uncharacterised-protein
MSTPTDPYNSGSRRPFDDDESILEPLESSDDADKAAWDRAFESDEPGDVPDGQAVDADADVSDDAEPAGEPAAEPSDAASEPASDASEPSDAEPSEPAAEPDAESHNPTLGSLVSDEPVGPTRTSVMSGAAPMAPAPSEGVAIPSGPAPAAAGAQVPAEPALHHSGPAFPPLPSDNPPATDGPNQPANQWAPGAGDSALALDIPDQPKGRGLMHFLSVLVTLLLVPVAWYLMADSGARLGAVVDNPWITGSVQVLPLLEMLGAFAVLAVIWLFARSSSLGAQVIGAIVGLAGVVALIIPKTAKGLVESLADAIGGFNDFTGNVVFHLANDLATGRIAIFGLLLFLTGLVAHIARRRGERHATAVTRRNFLLGRQ
>LR134476.1|VEI13157.1|926591_927590_-|Flp-pilus-assembly-protein,-ATPase-CpaE
MMKNDMLSVVYSGNDAKVADELSRLAELVGVDFTRGQGPAVLTFSDAEANTVVAHFHDVFSPYFPRGRVRLHVRDDTADILELLAAVGSTLRGRVVGVIGAHGGAGTTTLAAWLARLFAEGASAGLIDANPASVGIDHVLAIDAAPGKRWADLAGDGVILAGRLANLLPGWHGVSVVSADERGAMPNPALGAQVISALAQTQPWTVVDFSPVELVRSRGLAPGETAADRTESLIEWCDQIVLVTRADAVALAHARRRASELPGALVVGIGISGKSEAAHAADVIGVADVLGVRLLRGMRGDVDHGLAPGDRNRSGTHRDIQAIRERLEELIA
>LR134476.1|VEI13167.1|936815_937181_+|Uncharacterised-protein
MGHAAGAPVYSSRLGFMPRSCFYSNENGCSSPRVWIYCCGSNSAWKELLEGSDKRSLYVRSGKPVTVLVHQPEPERCREITHRHPDSLSRRRFTCAAIVVELLADENLLAPGVVIKPRLVS
>LR134476.1|VEI13168.1|937118_937544_-|Inner-membrane-protein-yccF
MRFLLNIIWVIFGGLALFLEYLLAGAVSFIFIITIPASIACFRIAGYVLWPFGRVVVDKPGAGAGSTFMNVVWFLVAGLWLSIGHIVTAAVQAITIIGIPLAIANIKLIPVTCFPFGKMVVSADQARFYNNPRGQQIFIGQ
>LR134476.1|VEI13169.1|937656_938244_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-MobA
MNEAVQAIIILGGGTGARLGGVSKPEFRAGGRRLIDILFDQLGETGFAGRRVLVAPRSVEVPPGVLVTLEDPPHGGPVAGIGAGLTALHDIDDAALIALATCDAPVAVRLLPELATAIGVHDGAVPVNPEGWPLYTHGVYRAGALRTLDYPRNASVRAVLSVLDLTYVEDTAGHCIDVDEPADVPVLLRHLDTLS
>LR134476.1|VEI13170.1|938378_939416_+|Probable-molybdopterin-cofactor-synthesis-protein-A
MTVEPMRMLALADQWGRVARDLRVSLTDRCNLRCSYCMPPEGLDWLPTAQTLTDAEVKRLINIAVSLLGIEEIRFTGGEPLLRRGLLDIAAYARSLRTRSGARPELALTTNALGLDKKASALAEAGISRVNISLDTVDRELYARISGRDRLPDVFAGIDAARAAGLTPIKINAVAMRGVNDAGLPDVLRYCLQAGTQLRIIEHMPLGPRHTWRREAMMTQEDVLELLSAEFELSPLPRVDESAPASLWAVAPGRDHPAGTVGVIASVSKPFCGNCDRTRLTADGQIRTCLFAREETDLRGPMRAGASDEELARIWAGATWKKKPGHGIDDPSFVQPDRYMSEIGG
>LR134476.1|VEI13171.1|939412_939838_-|Molybdopterin-synthase-catalytic-subunit-1
MNTRIGSTGIQWEPLDTDTIASTVRSDTCGAVVIFEGIVRNHDAGRAVSGIEYSAHPSAAEVMYDVAAEVAGRHPECRVAVVHRVGTLGIGELALVAAVASPHRTASFAAITDVVDTVKEKLPVWKRQVFAGGTDEWVGSA
>LR134476.1|VEI13172.1|939905_940403_+|Molybdenum-cofactor-biosynthesis-protein-C
MKLPHMNGAGEAWMVDVTAKQPTIREASAQAKVLVAPEVMTALREGTVPKGDVLAVARVAGIAAAKRVPDLLPLAHTIGVHGAEVDIALGADHVLIRTTVRSADRTGVEMEALTAAAVAALNVVDMVKGVDRSAAITDVFITRKSGGRSGTWERPGFEDDHVIDL
>LR134476.1|VEI13173.1|940386_941760_+|Molybdopterin-molybdenumtransferase
MSSTSDRPLTPEDYWQLLVENLAPQRLGTEVVSLADSHGRTLADDAHATFSVPPFDNSAMDGFAVRGADFGDDAGHDDGPWEFAVVADIAAGHTPTARGDVEGTAREEVGQLPPAARIMTGAPMPAWADAVVPVEDTDAPRGASAAPRTVTVHRAPKPGANVRLAGEDIAAEDLVVSAGSVISARTASTLAAIGYGEVEVVTRPRVAVLATGAELAAPGEQLSPGMIPDSNSTLLALLVREAGGQAVLARTTGDTAADFGAALPTDVDLIVTSGGVSMGAFDPVKEYGLAHGWTFEKVAMQPGKPQGHGMAGSVPVIALPGNPVSVAVSFRLFVRPFIGRLLGQPDSLASTTRMARAGPAWRSSPGRRQYLPGALLPGGSTVRSSANENLVDEGSTHGDSTAGGSTDGDGYDVVVPVHRLGSGSHLAASLHAAQVLAVVDAEVTEVKPGDLVQIIPL
>LR134476.1|VEI13174.1|941788_942280_-|Molybdenum-cofactor-biosynthesis-protein-B
MDINAAVVTVSDRATAGEREDLSGPTAVRLLEEAGVKVLETAVVSDDVRAIAEGVQNVAYDEIDLIITTGGTGITPQDYTARAMDPLLRFDIPGIAEAIRHRGVQKGVPGALLSRGRAGVMVGGKNRTLVINLAGSPDAVEDGLAVVIPVLEHAIAQMRGGDH
>LR134476.1|VEI13175.1|942482_943259_+|Molybdate-binding-periplasmic-protein-precursor
MKTRTLALVGSLLIGLAAGGCSADDNNDASPSDDTTEITVFAAASLNAAFPEIAEEVFTESHPDVVVRFAFEGSSSLAEKLQSGASADVFASANEANMTKVTDAGLAAEPTKLTTNTLRLIVPAGNPAGVTDLESANAAKFVVCAPQVPCGAASQELAQAEGITLQPVSEEQSVSDVRAKVESGEADAGLVYLTDALLAGDAVDIVDAPGVAAVGTTYMITALSDAPNPELAKAFIDAVMSDAGQEIMAKYGFGETAK
>LR134476.1|VEI13176.1|943282_945550_+|Sulfate/thiosulfate-import-ATP-binding-protein-CysA
MMKLRGIPSWFWLPALLALLALTLPLVGMASRVPWADLGTILASESSVTALWLSLRTCLVSTAVSLVIGCPLALIFARAGELPVRPRWLTPVRALVLVPLVMPPVVAGLALLATFGRRGVFGPALEAVGIQVPFTTLAVVLAQIFVSLPYLVMTVETAARAAGSDLEHAARGLGASRWVQFSRITLPLLAPSIASGASLAFARSLGEFGATITFAGSMQGTTRTLPLEVYLQREQDPAAALALALVLIVFALALTGLTSVLEARNMRRFAHSDHDAGHDTGHDTGSGVASSGLGDAAGFTKLAARTASKTNQTAAAAIASAPDPAASAPGQASSMPVQAASAATAAVGPGRAANTPEPGPTNAPSEPSPAPAPFTLVAHVPERKVAYELTGEPGETLALIGPNGSGKSTGLRLLAGDITSPTARVDVPDTIGFLDQSPSLFPHMSVLDNVAFGPRCHGLSKTAARQRARAELATVGLADLADRAPAQLSGGQAQRVALARVLAVDPQLLLLDEPFAALDAASADALRSLIAARTRGLTTVIVTHDLIDVLSLADRVAVLDAGRLADLGPTSSCLTNPATAFAAEFAGLNMQFGHVTGGVLQINDAKVQIHGQLADVHEGARAAAVFDPRAVALRAVPPSAVSRGTVPHGEADAHTISTDNIQTGEAPSRGTVGRSSVRNAIPGTVTSIQASSVGVDVRLDIGSTTPLRALITAAAASELGITVGTELVAEVKAMQVRIIPVRSASRDDSQSAGGV

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Crispr_ID: LR134476_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134476_4

1271489-1273715

TypeI-E

I-E

Consensus_repeat	Method
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CRISPRCasFinder
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CRT
AGGCTCATCCCCGCCAGCGCGGGGAGCAC	PILER-CR
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	PILER-CR

36 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LR134476_4

>merge|LR134476|4|1271489-1273715|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
CAGGCTTATCCCGCCAGCGCGGGGAGCACCTCTATCGCGGTCTTCATCGCTTCTAACGCGGGGGCTCATCCCCGCCAGCGCGGGGAGCACGTTACGCATGACAACGCGCCGGGCGTACGCCAGGGCTCATCCCCGCCAGCGCGGGGAGCACTGCGGGGCGTGCATGGGCTCCCGCCCAAACCCCGGCTCATCCCCGCCAGCGCGGGGAGCACGAAGACGACCACGAGCACGTCACCGCAGTCACGGGCTCATCCCCGCCAGCGCGGGGAGCACTGAAGATGAGCTGGCAGAAAACGCTAAGCGCGTGGGCTCATCCCCGCCAGCGCGGGGAGCACAATAGCGACTGACAATACGCGGCCGCATACTCAGGCTCATCCCCGCCAGCGCGGGGAGCACCTGACGCAGGCGATTCCACTTTCTGAAAAGGAAGGCTCATCCCCGCCAGCGCGGGGAGCACGCGGACCGGTTTCTTATCGTCCATGCCACGATGGGCTCATCCCCGCCAGCGCGGGGAGCACGCGGACCGGTTTCTTATCGTCCATGCCACGATGGGCTCATCCCCGCCAGCGCGGGGAGCACTCATAGCTTGGTCACCTGTGCTTTTTCGTGGAGGGCTCATCCCCGCCAGCGAGGGGAGCACGGCTTGTCTTTCTCGCCGTAGAGGGTGCGCCGGGGCTCATCCCCGCCAGCGCGGGGAGCACATATAGTTCACTTGGGTATAGTTCTGTGCTCAGGGCTCATCCCCGCCAGCGAGGGGAGCACTAAAGGCAGAGCGGCTTGGATTGGGCCGGCAAGGGCTCATCCCCGCCAGCGCGGGGAGCACCATGACTGCGACGCCGTTAGCGTACTGTAATTGGGCTCATCCCCGCCAGCGCGGGGAGCACTGCCTCGTTCCGGACAGCCTACGAGTCCGACCGGGCTCATCCCCGCCAGCGCGGGGAGCACATACGTTTTCCGCTTGCCTCGACGGCCAGACGGGGCTCATCCCCGCCAGCGCGGGGAGCACCTACCAGCAGTCCGCTTTCGACAACGAACCACCGGGCTCATCCCCGCCAGCGCGGGGAGCACCATAATCTGGGCGATGATTTCATGCCGCACGAGGGCTCATCCCCGCCAGCGCGGGGAGCACGGGGCGGCTGACGTTGAACAAGTATCAGAACTGGGCTCATCCCCGCCAGCGCGGGGAGCACTGGGCTTCTATTCACGTGCCGAAGACGGTGACGGGCTCATCCCCGCCAGCGCGGGGAGCACAGCGATTTTCGTAAAGTAGCCTAGCGACATTGGGGCTCATCCCCGCCAGCGCGGGGAGCACTCGTCAGCGAAAATTTTCCGCTGCACGCACCGGGGCTCATCCCCGCCAGCGCGGGGAGCACGGCCTGCCCGTGTCTGATGTGGCTATCACGATGGGCTCATCCCCGCCAGCGCGGGGAGCACCGGTTAACCCGCCAAAACACGAAATCAGTACAGGGCTCATCCCCGCCAGCGCGGGGAGCACTTTTCCCCGGTCTCAGAGTCATTGCGGGAGGCGGGCTCATCCCCGCCAGCGCGGGGAGCACGAAACGGGTGCGTTGGAATCTTTGTCCAAACTGGGCTCATCCCCGCCAGCGCGGGGAGCACTATCTTCCAGATCACCAGAGGCTTCAGCCTGTCGGCTCATCCCCGCCAGCGCGGGGAGCACCGTGACCAGCTTGAGCAGTCGAACGAGAAACTGGGCTCATCCCCGCCAGCGCGGGGAGCACCAGATTCTCAGTGAGGGCGATGTCGGCCAGACGGGCTCATCCCCGCCAGCGCGGGGAGCACATGAGAGACTGCGGCATCGGCAGCCGAAACACGGGCTCATCCCCGCCAGCGCGGGGAGCACGCCCGCGATCCGATGACGCTGGCCTACCCGCTGGGCTCATCCCCGCCAGCGCGGGGAGCACTTACCTCCCACGTTAGCCTCTCTCTATCACATGGGCTCATCCCCGCCAGCGCGGGGAGCACTATGCCAGATGGTATAGCCTAACGGCATGAACGGGCTCATCCCCGCCAGCGCGGGGAGCACTGGCTCTCGTAGCCGGGCTAACGCCTTGTCTCGGGCTCATCCCCGCCAGCGCGGGGAGCACTGGTCACCACGATTGGGCACGTCACTTCCACGGGGCTCATCCCCGCCAGCGCGGGGAGCACTGGTCACCACGATTGGGCACGTCACTTCCACGGGGCTCATCCCCGCCAGCGCGGGGAGCAC

>LR134476|4|4|1271489-1273715|CRISPRCasFinder
CAGGCTTATCCCGCCAGCGCGGGGAGCAC	CTCTATCGCGGTCTTCATCGCTTCTAACGCGG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GTTACGCATGACAACGCGCCGGGCGTACGCCA
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGCGGGGCGTGCATGGGCTCCCGCCCAAACCC
CGGCTCATCCCCGCCAGCGCGGGGAGCAC	GAAGACGACCACGAGCACGTCACCGCAGTCAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGAAGATGAGCTGGCAGAAAACGCTAAGCGCGT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	AATAGCGACTGACAATACGCGGCCGCATACTC
AGGCTCATCCCCGCCAGCGCGGGGAGCAC	CTGACGCAGGCGATTCCACTTTCTGAAAAGGA
AGGCTCATCCCCGCCAGCGCGGGGAGCAC	GCGGACCGGTTTCTTATCGTCCATGCCACGAT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GCGGACCGGTTTCTTATCGTCCATGCCACGAT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TCATAGCTTGGTCACCTGTGCTTTTTCGTGGA
GGGCTCATCCCCGCCAGCGAGGGGAGCAC	GGCTTGTCTTTCTCGCCGTAGAGGGTGCGCCG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	ATATAGTTCACTTGGGTATAGTTCTGTGCTCA
GGGCTCATCCCCGCCAGCGAGGGGAGCAC	TAAAGGCAGAGCGGCTTGGATTGGGCCGGCAA
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CATGACTGCGACGCCGTTAGCGTACTGTAATT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGCCTCGTTCCGGACAGCCTACGAGTCCGACC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	ATACGTTTTCCGCTTGCCTCGACGGCCAGACG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CTACCAGCAGTCCGCTTTCGACAACGAACCACC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CATAATCTGGGCGATGATTTCATGCCGCACGA
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GGGGCGGCTGACGTTGAACAAGTATCAGAACT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGGCTTCTATTCACGTGCCGAAGACGGTGAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	AGCGATTTTCGTAAAGTAGCCTAGCGACATTG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TCGTCAGCGAAAATTTTCCGCTGCACGCACCG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GGCCTGCCCGTGTCTGATGTGGCTATCACGAT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CGGTTAACCCGCCAAAACACGAAATCAGTACA
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TTTTCCCCGGTCTCAGAGTCATTGCGGGAGGC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GAAACGGGTGCGTTGGAATCTTTGTCCAAACT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TATCTTCCAGATCACCAGAGGCTTCAGCCTGT
CGGCTCATCCCCGCCAGCGCGGGGAGCAC	CGTGACCAGCTTGAGCAGTCGAACGAGAAACT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CAGATTCTCAGTGAGGGCGATGTCGGCCAGAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	ATGAGAGACTGCGGCATCGGCAGCCGAAACAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GCCCGCGATCCGATGACGCTGGCCTACCCGCT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TTACCTCCCACGTTAGCCTCTCTCTATCACAT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TATGCCAGATGGTATAGCCTAACGGCATGAAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGCTCTCGTAGCCGGGCTAACGCCTTGTCTC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGTCACCACGATTGGGCACGTCACTTCCACG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGTCACCACGATTGGGCACGTCACTTCCACG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC

>LR134476|4|1|1271489-1273715|CRT
CAGGCTTATCCCGCCAGCGCGGGGAGCAC	CTCTATCGCGGTCTTCATCGCTTCTAACGCGG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GTTACGCATGACAACGCGCCGGGCGTACGCCA
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGCGGGGCGTGCATGGGCTCCCGCCCAAACCC
CGGCTCATCCCCGCCAGCGCGGGGAGCAC	GAAGACGACCACGAGCACGTCACCGCAGTCAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGAAGATGAGCTGGCAGAAAACGCTAAGCGCGT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	AATAGCGACTGACAATACGCGGCCGCATACTC
AGGCTCATCCCCGCCAGCGCGGGGAGCAC	CTGACGCAGGCGATTCCACTTTCTGAAAAGGA
AGGCTCATCCCCGCCAGCGCGGGGAGCAC	GCGGACCGGTTTCTTATCGTCCATGCCACGAT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GCGGACCGGTTTCTTATCGTCCATGCCACGAT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TCATAGCTTGGTCACCTGTGCTTTTTCGTGGA
GGGCTCATCCCCGCCAGCGAGGGGAGCAC	GGCTTGTCTTTCTCGCCGTAGAGGGTGCGCCG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	ATATAGTTCACTTGGGTATAGTTCTGTGCTCA
GGGCTCATCCCCGCCAGCGAGGGGAGCAC	TAAAGGCAGAGCGGCTTGGATTGGGCCGGCAA
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CATGACTGCGACGCCGTTAGCGTACTGTAATT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGCCTCGTTCCGGACAGCCTACGAGTCCGACC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	ATACGTTTTCCGCTTGCCTCGACGGCCAGACG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CTACCAGCAGTCCGCTTTCGACAACGAACCACC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CATAATCTGGGCGATGATTTCATGCCGCACGA
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GGGGCGGCTGACGTTGAACAAGTATCAGAACT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGGCTTCTATTCACGTGCCGAAGACGGTGAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	AGCGATTTTCGTAAAGTAGCCTAGCGACATTG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TCGTCAGCGAAAATTTTCCGCTGCACGCACCG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GGCCTGCCCGTGTCTGATGTGGCTATCACGAT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CGGTTAACCCGCCAAAACACGAAATCAGTACA
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TTTTCCCCGGTCTCAGAGTCATTGCGGGAGGC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GAAACGGGTGCGTTGGAATCTTTGTCCAAACT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TATCTTCCAGATCACCAGAGGCTTCAGCCTGT
CGGCTCATCCCCGCCAGCGCGGGGAGCAC	CGTGACCAGCTTGAGCAGTCGAACGAGAAACT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CAGATTCTCAGTGAGGGCGATGTCGGCCAGAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	ATGAGAGACTGCGGCATCGGCAGCCGAAACAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GCCCGCGATCCGATGACGCTGGCCTACCCGCT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TTACCTCCCACGTTAGCCTCTCTCTATCACAT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TATGCCAGATGGTATAGCCTAACGGCATGAAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGCTCTCGTAGCCGGGCTAACGCCTTGTCTC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGTCACCACGATTGGGCACGTCACTTCCACG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGTCACCACGATTGGGCACGTCACTTCCACG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC

>LR134476|4|1|1271796-1271945|PILER-CR
GGCTCATCCCCGCCAGCGCGGGGAGCACA	ATAGCGACTGACAATACGCGGCCGCATACTCA
GGCTCATCCCCGCCAGCGCGGGGAGCACC	TGACGCAGGCGATTCCACTTTCTGAAAAGGAA
GGCTCATCCCCGCCAGCGCGGGGAGCACGCGGACCGGTTTCTTATCGTCCATGCCACGATGGGCTCATCCCCGCCAGCGCGGGGAGCACGCGGACCGGTTTCTTATCGTCCATGCCACGATGGGCTCATCCCCGCCAGCGCGGGGAGCACTCATAGCTTGGTCACCTGTGCTTTTTCGTGGAGGGCTCATCCCCGCCAGCGAGGGGAGCACGGCTTGTCTTTCTCGCCGTAGAGGGTGCGCCGGGGCTCATCCCCGCCAGCGCGGGGAGCACATATAGTTCACTTGGGTATAGTTCTGTGCTCAGGGCTCATCCCCGCCAGCGAGGGGAGCACTAAAGGCAGAGCGGCTTGGATTGGGCCGGCAAGGGCTCATCCCCGCCAGCGCGGGGAGCACCATGACTGCGACGCCGTTAGCGTACTGTAATTGGGCTCATCCCCGCCAGCGCGGGGAGCACTGCCTCGTTCCGGACAGCCTACGAGTCCGACCGGGCTCATCCCCGCCAGCGCGGGGAGCACATACGTTTTCCGCTTGCCTCGACGGCCAGACGGGGCTCATCCCCGCCAGCGCGGGGAGCACCTACCAGCAGTCCGCTTTCGACAACGAACCACCGGGCTCATCCCCGCCAGCGCGGGGAGCACCATAATCTGGGCGATGATTTCATGCCGCACGAGGGCTCATCCCCGCCAGCGCGGGGAGCACGGGGCGGCTGACGTTGAACAAGTATCAGAACTGGGCTCATCCCCGCCAGCGCGGGGAGCACTGGGCTTCTATTCACGTGCCGAAGACGGTGACGGGCTCATCCCCGCCAGCGCGGGGAGCACAGCGATTTTCGTAAAGTAGCCTAGCGACATTGGGGCTCATCCCCGCCAGCGCGGGGAGCACTCGTCAGCGAAAATTTTCCGCTGCACGCACCGGGGCTCATCCCCGCCAGCGCGGGGAGCACGGCCTGCCCGTGTCTGATGTGGCTATCACGATGGGCTCATCCCCGCCAGCGCGGGGAGCACCGGTTAACCCGCCAAAACACGAAATCAGTACAGGGCTCATCCCCGCCAGCGCGGGGAGCAC	TTTTCCCCGGTCTCAGAGTCATTGCGGGAGGC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GAAACGGGTGCGTTGGAATCTTTGTCCAAACT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TATCTTCCAGATCACCAGAGGCTTCAGCCTGT
CGGCTCATCCCCGCCAGCGCGGGGAGCAC	CGTGACCAGCTTGAGCAGTCGAACGAGAAACT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CAGATTCTCAGTGAGGGCGATGTCGGCCAGAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	ATGAGAGACTGCGGCATCGGCAGCCGAAACAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GCCCGCGATCCGATGACGCTGGCCTACCCGCT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TTACCTCCCACGTTAGCCTCTCTCTATCACAT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TATGCCAGATGGTATAGCCTAACGGCATGAAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGCTCTCGTAGCCGGGCTAACGCCTTGTCTC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGTCACCACGATTGGGCACGTCACTTCCACG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGTCACCACGATTGGGCACGTCACTTCCACG


>LR134476|4|2|1272955-1273715|PILER-CR
	ATAGCGACTGACAATACGCGGCCGCATACTCA
GGCTCATCCCCGCCAGCGCGGGGAGCACC	TGACGCAGGCGATTCCACTTTCTGAAAAGGAA
GGCTCATCCCCGCCAGCGCGGGGAGCACGCGGACCGGTTTCTTATCGTCCATGCCACGATGGGCTCATCCCCGCCAGCGCGGGGAGCACGCGGACCGGTTTCTTATCGTCCATGCCACGATGGGCTCATCCCCGCCAGCGCGGGGAGCACTCATAGCTTGGTCACCTGTGCTTTTTCGTGGAGGGCTCATCCCCGCCAGCGAGGGGAGCACGGCTTGTCTTTCTCGCCGTAGAGGGTGCGCCGGGGCTCATCCCCGCCAGCGCGGGGAGCACATATAGTTCACTTGGGTATAGTTCTGTGCTCAGGGCTCATCCCCGCCAGCGAGGGGAGCACTAAAGGCAGAGCGGCTTGGATTGGGCCGGCAAGGGCTCATCCCCGCCAGCGCGGGGAGCACCATGACTGCGACGCCGTTAGCGTACTGTAATTGGGCTCATCCCCGCCAGCGCGGGGAGCACTGCCTCGTTCCGGACAGCCTACGAGTCCGACCGGGCTCATCCCCGCCAGCGCGGGGAGCACATACGTTTTCCGCTTGCCTCGACGGCCAGACGGGGCTCATCCCCGCCAGCGCGGGGAGCACCTACCAGCAGTCCGCTTTCGACAACGAACCACCGGGCTCATCCCCGCCAGCGCGGGGAGCACCATAATCTGGGCGATGATTTCATGCCGCACGAGGGCTCATCCCCGCCAGCGCGGGGAGCACGGGGCGGCTGACGTTGAACAAGTATCAGAACTGGGCTCATCCCCGCCAGCGCGGGGAGCACTGGGCTTCTATTCACGTGCCGAAGACGGTGACGGGCTCATCCCCGCCAGCGCGGGGAGCACAGCGATTTTCGTAAAGTAGCCTAGCGACATTGGGGCTCATCCCCGCCAGCGCGGGGAGCACTCGTCAGCGAAAATTTTCCGCTGCACGCACCGGGGCTCATCCCCGCCAGCGCGGGGAGCACGGCCTGCCCGTGTCTGATGTGGCTATCACGATGGGCTCATCCCCGCCAGCGCGGGGAGCACCGGTTAACCCGCCAAAACACGAAATCAGTACAGGGCTCATCCCCGCCAGCGCGGGGAGCAC	TTTTCCCCGGTCTCAGAGTCATTGCGGGAGGC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GAAACGGGTGCGTTGGAATCTTTGTCCAAACT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TATCTTCCAGATCACCAGAGGCTTCAGCCTGT
CGGCTCATCCCCGCCAGCGCGGGGAGCAC	CGTGACCAGCTTGAGCAGTCGAACGAGAAACT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	CAGATTCTCAGTGAGGGCGATGTCGGCCAGAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	ATGAGAGACTGCGGCATCGGCAGCCGAAACAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	GCCCGCGATCCGATGACGCTGGCCTACCCGCT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TTACCTCCCACGTTAGCCTCTCTCTATCACAT
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TATGCCAGATGGTATAGCCTAACGGCATGAAC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGCTCTCGTAGCCGGGCTAACGCCTTGTCTC
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGTCACCACGATTGGGCACGTCACTTCCACG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC	TGGTCACCACGATTGGGCACGTCACTTCCACG
GGGCTCATCCCCGCCAGCGCGGGGAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134476.1\|VEI13475.1\|1283275_1283533_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134476.1\|VEI13459.1\|1262971_1264261_-\|Modification-methylase-HaeIII	unknown	unknown	gnl\|CDD\|223348
LR134476.1\|VEI13471.1\|1276534_1277668_-\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E/ECOLI	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
LR134476.1\|VEI13469.1\|1275158_1275827_-\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E/ECOLI	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
LR134476.1\|VEI13473.1\|1278373_1280107_-\|CRISPR-type-I-E/ECOLI-associated-protein-CasA/Cse1	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
LR134476.1\|VEI13458.1\|1262135_1262960_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134476.1\|VEI13470.1\|1275826_1276531_-\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E/ECOLI	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LR134476.1\|VEI13457.1\|1261812_1262016_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134476.1\|VEI13476.1\|1283410_1284064_-\|Nucleotidyl-transferase-of-uncharacterised-function-(DUF1814)	unknown	unknown	gnl\|CDD\|378065
LR134476.1\|VEI13468.1\|1274217_1275156_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-E/ECOLI	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LR134476.1\|VEI13474.1\|1280285_1283096_-\|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
LR134476.1\|VEI13465.1\|1269807_1270215_-\|Membrane-protein-of-uncharacterised-function	unknown	unknown	gnl\|CDD\|224861
LR134476.1\|VEI13464.1\|1268978_1269803_-\|Fructosamine-3-kinase	unknown	unknown	gnl\|CDD\|225547
LR134476.1\|VEI13460.1\|1264339_1265788_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134476.1\|VEI13463.1\|1267579_1268956_-\|Adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
LR134476.1\|VEI13466.1\|1270215_1271340_+\|Putative-phenylalanine-aminotransferase	unknown	unknown	gnl\|CDD\|179559
LR134476.1\|VEI13462.1\|1266957_1267572_-\|Inner-membrane-protein-YqjA	unknown	unknown	gnl\|CDD\|223659
LR134476.1\|VEI13472.1\|1277681_1278374_-\|CRISPR-associated-Cse2-family-protein	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
LR134476.1\|VEI13467.1\|1273873_1274221_-\|putative-ssRNA-endonuclease	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
LR134476.1\|VEI13461.1\|1265858_1266827_+\|Exopolyphosphatase	unknown	unknown	gnl\|CDD\|223326

Protein	Function_ID	Function_description	E-value
LR134476.1\|VEI13459.1\|1262971_1264261_-\|Modification-methylase-HaeIII	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	3.92755e-80
LR134476.1\|VEI13474.1\|1280285_1283096_-\|helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	9.42945e-90
LR134476.1\|VEI13469.1\|1275158_1275827_-\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E/ECOLI	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	3.09945e-74
LR134476.1\|VEI13473.1\|1278373_1280107_-\|CRISPR-type-I-E/ECOLI-associated-protein-CasA/Cse1	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	3.06905e-108
LR134476.1\|VEI13471.1\|1276534_1277668_-\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E/ECOLI	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.72968e-154
LR134476.1\|VEI13465.1\|1269807_1270215_-\|Membrane-protein-of-uncharacterised-function	gnl\|CDD\|224861	COG1950, COG1950, Predicted membrane protein [Function unknown].	8.42489e-19
LR134476.1\|VEI13476.1\|1283410_1284064_-\|Nucleotidyl-transferase-of-uncharacterised-function-(DUF1814)	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.0015749
LR134476.1\|VEI13468.1\|1274217_1275156_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-E/ECOLI	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.8383e-124
LR134476.1\|VEI13462.1\|1266957_1267572_-\|Inner-membrane-protein-YqjA	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.28338e-39
LR134476.1\|VEI13464.1\|1268978_1269803_-\|Fructosamine-3-kinase	gnl\|CDD\|225547	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown].	2.16482e-38
LR134476.1\|VEI13470.1\|1275826_1276531_-\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E/ECOLI	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	9.12014e-43
LR134476.1\|VEI13463.1\|1267579_1268956_-\|Adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
LR134476.1\|VEI13466.1\|1270215_1271340_+\|Putative-phenylalanine-aminotransferase	gnl\|CDD\|179559	PRK03321, PRK03321, putative aminotransferase; Provisional.	5.76097e-145
LR134476.1\|VEI13472.1\|1277681_1278374_-\|CRISPR-associated-Cse2-family-protein	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	2.35408e-33
LR134476.1\|VEI13467.1\|1273873_1274221_-\|putative-ssRNA-endonuclease	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	7.84899e-41
LR134476.1\|VEI13461.1\|1265858_1266827_+\|Exopolyphosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	1.33641e-71

>LR134476.1|VEI13466.1|1270215_1271340_+|Putative-phenylalanine-aminotransferase
MGYFTGLVKGWRGDAPGAKSVHDRGMYFRPDIADLPAYVAGKNPDDPDVIKVASNEMPFPTLPGVAAVINGRLGDLNRYPDMGNAVLRDAIAAYHRVSPANVAVGNGSTALIEKFLTAVCTAGSQVVMPWRSFEAYPIAIQVAGATPVGVPLKGGKPDLPAMVDAIGADTRAVLICTPNNPTSAALTHSELHQFLHAVPAEVPVLLDEAYVDFVEMDDPVRGVELAREFGNVVVLRTFSKAYGLAGIRVGYAIADAGVVAGLDKVATPFGVNVLAQAAAVAALQSRPEVDKRVAAVVAERGKLVGALRALGWDGPEPQANYVWFDLGEDSARFARFCAEEKIVVRTFVDEGVRVTVAEPEASLRLLRAYKRYRA
>LR134476.1|VEI13465.1|1269807_1270215_-|Membrane-protein-of-uncharacterised-function
MRFLITAAVNAVALWVATILLSGVRLDGAVPADSFLSGVDPSGQRAIYFLLAGGVLGVVNMLVRPIVKVLSLPFYVLTLGLFFIIVNALMISLTAWVTGMFDLSLTIDGFWWAVGAGIVVGVVNWFLSALLPDRS
>LR134476.1|VEI13464.1|1268978_1269803_-|Fructosamine-3-kinase
MPRTFRKTASARAIAHEVAGLQELGGATTAGGVPVAQLAGYTGTTLETIAITAVGPSREAAREFGARLARTHAFSNGPRVFGQAPATFPPEFDGVGHMGDALLPMVQADSTTPERPAQQAARRFGEFYAADRLLPYVKAAVDNGSMPNGQVIERLAKRLRDGVFDSPQPHLVATEAALLHGDLWSGNVLWAREGAVLIDPACHGGHAESDLAQLRVFGTPFVEDIYAGYHEVSPLADGWRDRIGLHQLHILIVHAALFGGSYGRQTIRVASPYL
>LR134476.1|VEI13463.1|1267579_1268956_-|Adenylosuccinate-lyase
MTKFLSPLDSRYRAETEALADYLSEPALNRARLHVEVEWLIFLSVNKILPGAPVIGESEIAYLRALVEDFDDVAIARLAEFEAETRHDVKAVEYYLKEKMHAGPAPLPQMDEIVHIFATSEDINNLAHALNIKHAVESVWLPQARAFVAELGERARDYAEVPMLARTHGQAASPTTLGKEFAVFAWRLTRQLERIDDAVYLGKFNGATGTYGAHAVSVPDADWPALAKQFVEGLGLTFNPLTTQIESHDWMAELFADVARFGRIAHNLATDFWTYISLGYLKQNLAAQGSTGSSTMPHKVNPIRFENAEANLEMSCALFDTLSATLVTSRLQRDLTDSSTLRNVGVAFGHSLLAVKNLRRGLAGVDANPQRLDEDLDRAWEVLAEPIQQVMRTARIAGVEGMEDPYERLKELTRGHAVDEHTMRDFIASLGLPADLAERLANLSPATYTGVAAQLAKS
>LR134476.1|VEI13462.1|1266957_1267572_-|Inner-membrane-protein-YqjA
MSTLDGIAGWAVELMEALGGVGVALLIAIENLFPPIPSEIILPLAGFTASLGTKFSLVEAIIWATIGSVVGAWALYGVARVFGRERTRAVFEWLPLVKIDDVDRTEEWFHKHDQSTVFFGRMLPIFRSLISLPAGVIKMNFLKFTLLTAAGSAIWNIVLVGAGYLLGENWHLVEQYVGVLSKIVLAVILIALAWWIIRRLRQNK
>LR134476.1|VEI13461.1|1265858_1266827_+|Exopolyphosphatase
MRLGVLDIGSNTVHLVVVDAYSRARPDPFADERSIVRLMQYLEDDGSINPEGVQALERATRKAVAFSRKNNVDELIGIVTSAVREATNGPQVMERLEKIAGTKFGVLSGAEESELTYFAARRWHGWAAGRIMVLDIGGGSFEVSLGIDEEPEFVASVPLGAGRLTKDFLKHDPPRASELVLLRREIESQLEPLAQQLKELPSPDHVVATSKTFRSLARLAGNRISVVGPEERRRMSRSDLGDWVERIARLPAASRMELPGITPERTYQIVAGAEVAYKAMKMFKIKRLEICPWALREGVLLERIDRFDSAPRTSGLDLSDLG
>LR134476.1|VEI13460.1|1264339_1265788_-|Uncharacterised-protein
MVTFMLAVSAPQAEALLQGYDVVSGYAVDAAAGSRVTEVSDLLDLLCLRFPDTPFADDEPLDIVHLPSDPFTMDRHAVGPLHPDAIRGGVIDYGFDGSGVARGGGVETDLLYLEPCRVTSGATLWRFYPGNPQPEHRGTYHGIAYGWENMETGTFTAAVPTPFLGPVIKRDWGAVPCDVEVEGGKPVAVTMVSPAEPDQEDGFQLIESGMWAKRIAVDDSAHIYTEFVTGRVSGMPVRVVRTVNSNGRLLLQVASALTDALYLTRAQFQRWSSGTFTALIAPDKVTDQRRIEAKPTDWDVADRPAIAARRESPVNFSDANELLRETFTLVSDTAPPDWREVTLRIQLVGTSALYEGYAKLDGDRFAAMRVLPTAVIHYMRRLKQDRVLAGEEPFLVAVIRLGKDGQGTLNVNGSQEPVWADHVDPAEWSNEMAAFPREAPDWMEERLASAPPATHTGPTPYPADLTANIHWIKEITGEDEDA
>LR134476.1|VEI13459.1|1262971_1264261_-|Modification-methylase-HaeIII
MERTRPIAVDLFAGAGGLSLGLEQAGYDVLAAVEYDPIHAAVHDYNFSYGATFAVNVQNITGDEIRRASAIADQEIHVVAGGPPCQGISMIGKRAIDDPRNELLKEYVRLVLELRPRYFVMENVAGLLVGTHRQLIGELIELLEDDGTYHVVKPLKVLQAAAYGVPQSRKRVFMIGHRNDVAAPRYPEESFTPRTIRGSIPAKAELPLGPSVADAIGDLPDVDQYEELLVSDTLLRAPYGSASPYSAILRGITVDAHDFSHRRPAVDGILTSSMRTIHTQRSIDRFMKTEPGTTEKVSRFLRLHPDGVCNTLRAGTASDRGAFTAPRPIHPARPRVITVREAARLHSYPDWFRFHETKWNGFRQIGNSVPPILGRAVASELLKADGIVPIEGIHVELGNAALLSMTAGEAHEYYGLTERAIPQRNRKVG
>LR134476.1|VEI13458.1|1262135_1262960_-|Uncharacterised-protein
MHNAIPDKRENRYQQLAGWVFSRHYKPGDTSVRWKREELRSAAKELGIPLPKNLGDVLYAIRYRMPLPSVMLETAPAGFEWIVRSVGRSAYSFDLIPAQVRIAPNPALAVTKIPDATPEIIAASALGDEQALLALVRYNRLIDIFLGVTAYSLQNHLRTTAIGIGQVEVDEVYLAVDRFGRQFVLPVQAKGGADEIGITQTEQDIAVCEEKWPDKICRPIAVQFADSGRIALFELAIQNNQVRVRRESHYQLVPASVITRDDLAEYSHSAMVEG
>LR134476.1|VEI13457.1|1261812_1262016_-|Uncharacterised-protein
MLHEEKDVLAENARLRAENAELRDINELLRVTSAGSVGDALDNALAEEEEYRQSHTTNQEQETKVNT
>LR134476.1|VEI13467.1|1273873_1274221_-|putative-ssRNA-endonuclease
MIVLQLTAVPAGLRGDLTKWLMEIAPGVFVGNPSARIRELVWERTVELCKDGRAIMVCSADTEQGMTFRTHRHAWVPTDFDGLTLMMRPDNSSKSKATERRTGWSTARHARKKRR
>LR134476.1|VEI13468.1|1274217_1275156_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-E/ECOLI
MASGPSSKPIDRLLLTRMENRLSFLYVERAVINRDGNALTIQDERGIVHVPATQIGVVLMGPGTKVTYAAMALLGDAGTSVVWVGEKGVRYYAHGRPAAKTAKFAEAHAKIWSNQRSRLRCARRMYAKRFPGENIKTFTMAQLRGREGARMKTIYAVEAQRTGVPWTKRSYDPNDFDSGDPINRALTEASAALYGIAHAVIVGLGCIPSLGIIHSGTDRSFVFDIADLYKAEIAIPAAVEAVAASAEGDDLNVRRRVRDKVVSARLMQRMTRDLQELMELPEEDSYADVDLFLWSELEPVPAGTNWDFGALQ
>LR134476.1|VEI13469.1|1275158_1275827_-|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E/ECOLI
MTTFTRLQLNPARRQARKYLTNPQALHAAVMASFPRDVDQNNERILWRLDQRGEQHLLYVVGPEKPRAAHIVEEAGWEIRPQETADYDRLLERLAEGQVWNFELLANPTKSINRGRERRGKVVAHLSVPEQIKWLLGKAESIGVDVGSLEHPTFNVTESKTLNFSKAIGTEGKRRRVHLVTARYAGRLKVTDAEKLRSALVNGVGRAKGYGCGLITLARGQE
>LR134476.1|VEI13470.1|1275826_1276531_-|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E/ECOLI
MAHSLLLLLKGPLQSWGDESRYKIRATGTTPSKSGVIGILASALGRDRCEPVDDLVQLEFAVRIDQPGSLLRDYQTAQPWQDKPNANANLVVRYFLSDAAFVAALGSEDRAWIEDLQRALREPAYPLFLGRRSCPAPANLDLGITDQPPVDALLNHEEWYATAAHKKESARIVELPIYRDGRPGEQGEARQDIPVSFSQNHRKYDWRTVVYAGSRTVENGLCQASDPFFNEVIS
>LR134476.1|VEI13471.1|1276534_1277668_-|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E/ECOLI
MTLVVDIHALHTIPPSLINRDDTGAPKSAIFGGVPRQRVSSQSWKRAIRKYFGQKIGKDRLGLRSKKLPEIIGARVLEIAPDFGLDNAVEGVKSLFEETKITIVKPKSGKDTKKDSKNQSPYPTTEALLFLSPHQIERAAQEIVAARGEKISEKDAAEILDTRHSIDMAMFGRMLAKPAAFSVDAAVQVAHAIGVHESQPEFDFFTAVDDVVENADETGAGMMGTVQMMSSTLYRFATVNVDGLAANLGDVELALPATNMFIRAFIESMPTGKQNTFANNTLPELVYVAIRDTRSVSLVNAFEDPVEGKDGTRRQAAARALAQEAREIEETYGMKPIGSFVLATGGLDEAFGDFAEKVNLPELGERVLDVLSSAKEE
>LR134476.1|VEI13472.1|1277681_1278374_-|CRISPR-associated-Cse2-family-protein
MEQPQPAATAGNSRIEDSPVKGRTRNHLARAIHATCSRLQEAYFSDPNSQRHRAARATLAELRRYSSLDLRANPLAVGQVLFVMQEEFSEKLVGKGDAPTPSEKAAYVSLTLFAIHMQSASEPAHVSGIGFARACGRLHAKIASGSVKARVDAMLLASNEDARLVHIRSLVSLLRSNNLGFDYARLATDLRALASIEKRPGVQLRWGRDFAWGYDEQCKTQSDSTRPNQD
>LR134476.1|VEI13473.1|1278373_1280107_-|CRISPR-type-I-E/ECOLI-associated-protein-CasA/Cse1
MFSLLDEPWIKCVDIDGKQLTVGIKNVFDGSQNIYRIQGDSPAQNYALTRLLLAVFWRAHHPETEVRPGSTYEHRKWFEETREDLRRAGRDEAVLEYLRQFESRFHLLDVKHPFMQVADLHTSEGVIKPVTLIVPEIKDDYFSMRAGSERDSLSFDEAARWLVYLQAYDYRGVKTGAVGDPRVKKGKGYPNQPAWTGMTGGTLVIGRDLLETLVLNTPQEALINPNDKPVWERNPDGPGERSTVGEPKEPQGAADLATWQSRRVRLYFEGDRVTGVLVALGDLTPDKGKNVFGDPMTPYRYSPAQSKKGQDIYYPRPYDVERTIWRAFDALVVTATDGGFSTKAKAPKRPLNLSSLATLARQVEGIPKVLNVELVSIAYGSNQSSVATTYSSTISMPTILLLQESRHLRNKVRAAVTATTQAALALEKFEGNLLIAAGLCPKDDDGRLKSKENDHIPKGTPTDRLLTELEPHFNHWLRQLASLTPEEASTDSNRLEELEASWQSTVRSKVEDEARIALRGAGPRALVGKLVKASKESPKELVSAAEYYQRLLLDLDEHLPKTARNKTMNHENTEESA
>LR134476.1|VEI13474.1|1280285_1283096_-|helicase-Cas3
MDIAKQAEDWLNSLSPEAHSLWAKSGTEDAYLRLPQHLIDAACVAEWLWEHWVSDSLKRSLASTWKLSESDTKTLYIFYAGTHDVGKATVSFQRLVEHRENSSYLLQPIYDVGLSLDWPEDEGANTKFPHGTASAGFIKKWLRAQGVSMPVAARMASVADAHHGFTTDTCVLAHFEEVIEHRNTEFDTVAIEFIEAMAQITDIFSVLPNVPEITSDACQLMTGLLIMADWIASNEEAFPYDFIAPQPVRVKQGMSAVDLPPSWDPVAPLSNAQEFFTRTFDWDESATVRPIQQAAVEIARAATGPTLMIIEAPTGEGKTEAGLAAAHVLGEKSGAQGVFVAAPTMATANGLFERITEWARRSSKSGSVASMYLAHSKNRLYNQFQQLRRRPLGKQTAGQGSHSDQEENKGDLVANQWLSGSRRGMLSNFVVGTVDQVLMMVLKVRFSMLRHVALAGKVVIIDEVHAYDAYMSQYLYRALEWLARYGASVILMSATLPPQQRLALASAYRKQIPHDVDEPVCALDSSFYPLVSVVDGEGVRSVEVSPRPDDAQISVRRIADDLATLSELVGDLLTDGGIALVICNTIKRAQEAYRSLQVDFAGEIELHHSAFIASHRSAKEDALREKLGPTARRGKGRPLRQVIVATQVAEQSLDIDADVLITDIAPVDLIIQRAGRLHRHSRPVEDRPEKVRTPKMFIRGIEDDGEVPAFDRGAVHIYGKKLLLATMAHLPEAINRPSGVPQLVREVYSEEPDIPAAWQVQWEEACEKADAERSAKETRAKTFRFPSPSNAAELELLFDKIHNDSPDLNGEQGGSAQVRDSEFTIEVIAIQPTANGYRAFGSDSEVLNGVLPTYSQDLDLAGNSLRLPAWTTRSDTDFNSVIDSLEANTPGEWASSGLLSGQVALNFDESGIANLGKYRVEYDPEIGLAVSTDETR
>LR134476.1|VEI13475.1|1283275_1283533_+|Uncharacterised-protein
MFALVFECLVNVCNCARGGAEEKSEVAQPFVFASIRRRQGEVLRGLLGAFNADGPTDEAALHTFIFCGVDVIGLDSPIVDGFNCS
>LR134476.1|VEI13476.1|1283410_1284064_-|Nucleotidyl-transferase-of-uncharacterised-function-(DUF1814)
MLSSSANQRRLIRESLDALEPYGFALAGSGAIREHGITARPTEDVDLFTVMEFKSDFAQAVLTLEAHLLDLGYNVKIYRQTATFCQLVVTDSTSGRFNVDLGIDWRQNQPTQFSVGPVLSQDDAVANKIAALYSRGEPRDYLDADAIRQSALYTDAELLALAQSSDPGFDLTMFTYRLRAVETIDYRRVEPYDIDPAEYERVQRRLISWAISIESAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134476_4	4.31\|1273350\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273350-1273381	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	91138-91169	3	0.906
LR134476_3	3.1\|936452\|25\|LR134476\|CRISPRCasFinder	936452-936476	25	NZ_CP010862	Marinovum algicola DG 898 plasmid pMaD7	8746-8770	4	0.84
LR134476_4	4.31\|1273350\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273350-1273381	32	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	885896-885927	6	0.812
LR134476_4	4.31\|1273350\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273350-1273381	32	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	956471-956502	6	0.812
LR134476_4	4.2\|1271579\|32\|LR134476\|CRISPRCasFinder,CRT	1271579-1271610	32	NZ_CP023286	Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pCuR, complete sequence	198508-198539	7	0.781
LR134476_4	4.2\|1271579\|32\|LR134476\|CRISPRCasFinder,CRT	1271579-1271610	32	NZ_CP018859	Xanthomonas citri pv. citri strain LH201 plasmid pLH201.1, complete sequence	180639-180670	7	0.781
LR134476_4	4.2\|1271579\|32\|LR134476\|CRISPRCasFinder,CRT	1271579-1271610	32	NZ_CP018851	Xanthomonas citri pv. citri strain LJ207-7 plasmid pLJ207-7.1, complete sequence	170179-170210	7	0.781
LR134476_4	4.2\|1271579\|32\|LR134476\|CRISPRCasFinder,CRT	1271579-1271610	32	NZ_CP018848	Xanthomonas citri pv. citri strain LL074-4 plasmid pLL074-4.1, complete sequence	9056-9087	7	0.781
LR134476_4	4.2\|1271579\|32\|LR134476\|CRISPRCasFinder,CRT	1271579-1271610	32	NZ_CP018855	Xanthomonas citri pv. citri strain LH276 plasmid pLH276.1, complete sequence	207379-207410	7	0.781
LR134476_4	4.2\|1271579\|32\|LR134476\|CRISPRCasFinder,CRT	1271579-1271610	32	NZ_CP018729	Xanthomonas gardneri strain JS749-3 plasmid pJS749-3.1, complete sequence	207545-207576	7	0.781
LR134476_4	4.31\|1273350\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273350-1273381	32	NZ_CP018172	Mesorhizobium oceanicum strain B7 plasmid unnamed1, complete sequence	52317-52348	7	0.781
LR134476_4	4.31\|1273350\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273350-1273381	32	NZ_LR134454	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence	108055-108086	7	0.781
LR134476_4	4.31\|1273350\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273350-1273381	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	45748-45779	7	0.781
LR134476_4	4.31\|1273350\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273350-1273381	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5735557-5735588	7	0.781
LR134476_4	4.31\|1273350\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273350-1273381	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1323985-1324016	7	0.781
LR134476_4	4.31\|1273350\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273350-1273381	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	808387-808418	7	0.781
LR134476_4	4.4\|1271701\|32\|LR134476\|CRISPRCasFinder,CRT	1271701-1271732	32	KR337653	Propionibacterium phage Pirate, complete genome	25525-25556	8	0.75
LR134476_4	4.4\|1271701\|32\|LR134476\|CRISPRCasFinder,CRT	1271701-1271732	32	NC_022337	Propionibacterium phage PHL071N05, complete genome	25624-25655	8	0.75
LR134476_4	4.4\|1271701\|32\|LR134476\|CRISPRCasFinder,CRT	1271701-1271732	32	NC_041954	Propionibacterium phage Keiki, complete genome	25535-25566	8	0.75
LR134476_4	4.18\|1272557\|32\|LR134476\|CRISPRCasFinder,CRT	1272557-1272588	32	NZ_CP012161	Octadecabacter temperatus strain SB1 plasmid OSB_p1, complete sequence	8661-8692	8	0.75
LR134476_4	4.19\|1272618\|32\|LR134476\|CRISPRCasFinder,CRT	1272618-1272649	32	MH029534	Myoviridae environmental samples clone NHS-Seq2, complete sequence	435-466	8	0.75
LR134476_4	4.19\|1272618\|32\|LR134476\|CRISPRCasFinder,CRT	1272618-1272649	32	MN855976	Siphoviridae sp. isolate 68, complete genome	26217-26248	8	0.75
LR134476_4	4.20\|1272679\|32\|LR134476\|CRISPRCasFinder,CRT	1272679-1272710	32	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	369-400	8	0.75
LR134476_4	4.20\|1272679\|32\|LR134476\|CRISPRCasFinder,CRT	1272679-1272710	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1130619-1130650	8	0.75
LR134476_4	4.29\|1273228\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273228-1273259	32	NC_011887	Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence	376204-376235	8	0.75
LR134476_4	4.14\|1272312\|32\|LR134476\|CRISPRCasFinder,CRT	1272312-1272343	32	MG945777	UNVERIFIED: Microviridae sp. isolate 3995-1801, complete genome	4582-4613	9	0.719
LR134476_4	4.16\|1272434\|32\|LR134476\|CRISPRCasFinder,CRT	1272434-1272465	32	NC_010408	Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1, complete sequence	44775-44806	9	0.719
LR134476_4	4.18\|1272557\|32\|LR134476\|CRISPRCasFinder,CRT	1272557-1272588	32	NC_023143	Phaeobacter gallaeciensis DSM 26640 plasmid pGal_G40, complete sequence	32023-32054	9	0.719
LR134476_4	4.18\|1272557\|32\|LR134476\|CRISPRCasFinder,CRT	1272557-1272588	32	NZ_CP010721	Phaeobacter piscinae strain P18 plasmid pP18_f, complete sequence	31028-31059	9	0.719
LR134476_4	4.18\|1272557\|32\|LR134476\|CRISPRCasFinder,CRT	1272557-1272588	32	NZ_CP010703	Phaeobacter inhibens strain P24 plasmid pP24_g, complete sequence	32078-32109	9	0.719
LR134476_4	4.18\|1272557\|32\|LR134476\|CRISPRCasFinder,CRT	1272557-1272588	32	NZ_CP010594	Phaeobacter gallaeciensis strain P11 plasmid pP11_f, complete sequence	31894-31925	9	0.719
LR134476_4	4.27\|1273106\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273106-1273137	32	NZ_CP021043	Phaeobacter gallaeciensis strain P129 plasmid pP129_c, complete sequence	49052-49083	9	0.719
LR134476_4	4.27\|1273106\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273106-1273137	32	NZ_CP010676	Phaeobacter gallaeciensis strain P75 plasmid pP75_c, complete sequence	49046-49077	9	0.719
LR134476_4	4.27\|1273106\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273106-1273137	32	NC_023139	Phaeobacter gallaeciensis DSM 26640 plasmid pGal_C110, complete sequence	49204-49235	9	0.719
LR134476_4	4.27\|1273106\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273106-1273137	32	NZ_CP010591	Phaeobacter gallaeciensis strain P11 plasmid pP11_c, complete sequence	49046-49077	9	0.719
LR134476_4	4.30\|1273289\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273289-1273320	32	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	761243-761274	9	0.719
LR134476_4	4.31\|1273350\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273350-1273381	32	NC_004900	Rhodococcus sp. B264-1 plasmid pB264, complete sequence	1000-1031	9	0.719
LR134476_4	4.35\|1273594\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273594-1273625	32	NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	232632-232663	9	0.719
LR134476_4	4.36\|1273655\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273655-1273686	32	NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	232632-232663	9	0.719
LR134476_4	4.11\|1272129\|32\|LR134476\|CRISPRCasFinder,CRT	1272129-1272160	32	NZ_CP010857	Marinovum algicola DG 898 plasmid pMaD2, complete sequence	210909-210940	10	0.688
LR134476_4	4.18\|1272557\|32\|LR134476\|CRISPRCasFinder,CRT	1272557-1272588	32	AP022674	Sphingomonas sp. HMP9 plasmid pHMP9 DNA, complete sequence	28947-28978	10	0.688
LR134476_4	4.28\|1273167\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273167-1273198	32	KY697807	Microcystis phage MACPNOA1, complete genome	28357-28388	10	0.688
LR134476_4	4.30\|1273289\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273289-1273320	32	NZ_CP040765	Paracoccus sp. 2251 plasmid unnamed1, complete sequence	191488-191519	10	0.688
LR134476_4	4.31\|1273350\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273350-1273381	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	50290-50321	10	0.688
LR134476_4	4.30\|1273289\|32\|LR134476\|CRISPRCasFinder,CRT,PILER-CR	1273289-1273320	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	793467-793498	11	0.656

1. spacer 4.31|1273350|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.906

gcccgcgatccgatgacgctggcctac-ccgct	CRISPR spacer
gcccgcaatccgatgtcgctggcctacaccgc-	Protospacer
******.******** *********** ****

2. spacer 3.1|936452|25|LR134476|CRISPRCasFinder matches to NZ_CP010862 (Marinovum algicola DG 898 plasmid pMaD7) position: , mismatch: 4, identity: 0.84

aggccggttagcgccgtcgagtcca	CRISPR spacer
gcgccggtgagcgccgtcgaggcca	Protospacer
. ****** ************ ***

3. spacer 4.31|1273350|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 6, identity: 0.812

gcccgcgatccgatgacgctggcctacccgct-	CRISPR spacer
gcccgcgatccggagacgctggcc-gccatcta	Protospacer
************. ********** .**  **

4. spacer 4.31|1273350|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 6, identity: 0.812

gcccgcgatccgatgacgctggcctacccgct-	CRISPR spacer
gcccgcgatccggagacgctggcc-gccatcta	Protospacer
************. ********** .**  **

5. spacer 4.2|1271579|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP023286 (Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pCuR, complete sequence) position: , mismatch: 7, identity: 0.781

gttacgcatgacaacgcgccgggcgtacgcca	CRISPR spacer
gttacccatggcaacgcgccgggctatcgtga	Protospacer
***** ****.*************   **. *

6. spacer 4.2|1271579|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP018859 (Xanthomonas citri pv. citri strain LH201 plasmid pLH201.1, complete sequence) position: , mismatch: 7, identity: 0.781

gttacgcatgacaacgcgccgggcgtacgcca	CRISPR spacer
gttacccatggcaacgcgccgggctatcgtga	Protospacer
***** ****.*************   **. *

7. spacer 4.2|1271579|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP018851 (Xanthomonas citri pv. citri strain LJ207-7 plasmid pLJ207-7.1, complete sequence) position: , mismatch: 7, identity: 0.781

gttacgcatgacaacgcgccgggcgtacgcca	CRISPR spacer
gttacccatggcaacgcgccgggctatcgtga	Protospacer
***** ****.*************   **. *

8. spacer 4.2|1271579|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP018848 (Xanthomonas citri pv. citri strain LL074-4 plasmid pLL074-4.1, complete sequence) position: , mismatch: 7, identity: 0.781

gttacgcatgacaacgcgccgggcgtacgcca	CRISPR spacer
gttacccatggcaacgcgccgggctatcgtga	Protospacer
***** ****.*************   **. *

9. spacer 4.2|1271579|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP018855 (Xanthomonas citri pv. citri strain LH276 plasmid pLH276.1, complete sequence) position: , mismatch: 7, identity: 0.781

gttacgcatgacaacgcgccgggcgtacgcca	CRISPR spacer
gttacccatggcaacgcgccgggctatcgtga	Protospacer
***** ****.*************   **. *

10. spacer 4.2|1271579|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP018729 (Xanthomonas gardneri strain JS749-3 plasmid pJS749-3.1, complete sequence) position: , mismatch: 7, identity: 0.781

gttacgcatgacaacgcgccgggcgtacgcca	CRISPR spacer
gttacccatggcaacgcgccgggctatcgtga	Protospacer
***** ****.*************   **. *

11. spacer 4.31|1273350|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018172 (Mesorhizobium oceanicum strain B7 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gcccgcgatccgatgacgctggcctacccgct	CRISPR spacer
gccggcgatccgaagacgctggccgcctcgag	Protospacer
*** ********* **********  *.**

12. spacer 4.31|1273350|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134454 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence) position: , mismatch: 7, identity: 0.781

gcccgcgatccgatgacgctggcctacccgct	CRISPR spacer
ggcggcgacccgacgacgctggcctacgcccg	Protospacer
* * ****.****.************* * *

13. spacer 4.31|1273350|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

gcccgcgatccgatgacgctggcctacccgct	CRISPR spacer
ccgcgcgatctggtgacgctggcctatgtgct	Protospacer
 * *******.*.*************. .***

14. spacer 4.31|1273350|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.781

gcccgcgatccgatgacgctggcctacccgct	CRISPR spacer
gcccgcgatccggagacgctggcgcgccagtt	Protospacer
************. ********* ..** *.*

15. spacer 4.31|1273350|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

gcccgcgatccgatgacgctggcctacccgct	CRISPR spacer
ccgcgcgatctggtgacgctggcctatgtgct	Protospacer
 * *******.*.*************. .***

16. spacer 4.31|1273350|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.781

gcccgcgatccgatgacgctggcctacccgct	CRISPR spacer
ccgcgcgatctggtgacgctggcctatgtgct	Protospacer
 * *******.*.*************. .***

17. spacer 4.4|1271701|32|LR134476|CRISPRCasFinder,CRT matches to KR337653 (Propionibacterium phage Pirate, complete genome) position: , mismatch: 8, identity: 0.75

gaagacgaccacgagcacgtcaccgcagtcac	CRISPR spacer
acagaagaccaccagcacgtcaccgacctcaa	Protospacer
. *** ****** ************   ***

18. spacer 4.4|1271701|32|LR134476|CRISPRCasFinder,CRT matches to NC_022337 (Propionibacterium phage PHL071N05, complete genome) position: , mismatch: 8, identity: 0.75

gaagacgaccacgagcacgtcaccgcagtcac	CRISPR spacer
acagaagaccaccagcacgtcaccgacctcaa	Protospacer
. *** ****** ************   ***

19. spacer 4.4|1271701|32|LR134476|CRISPRCasFinder,CRT matches to NC_041954 (Propionibacterium phage Keiki, complete genome) position: , mismatch: 8, identity: 0.75

gaagacgaccacgagcacgtcaccgcagtcac	CRISPR spacer
acagaagaccaccagcacgtcaccgacctcaa	Protospacer
. *** ****** ************   ***

20. spacer 4.18|1272557|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP012161 (Octadecabacter temperatus strain SB1 plasmid OSB_p1, complete sequence) position: , mismatch: 8, identity: 0.75

cataatctgggcgatgatttcatgccgcacga	CRISPR spacer
cttaatctgcgcgatgatttcctgcgtcagct	Protospacer
* ******* *********** ***  **

21. spacer 4.19|1272618|32|LR134476|CRISPRCasFinder,CRT matches to MH029534 (Myoviridae environmental samples clone NHS-Seq2, complete sequence) position: , mismatch: 8, identity: 0.75

ggggcggctgacgttgaacaagtatcagaact	CRISPR spacer
ttcggcgctgaccttgaacaagtaccagaaca	Protospacer
   *  ****** ***********.******

22. spacer 4.19|1272618|32|LR134476|CRISPRCasFinder,CRT matches to MN855976 (Siphoviridae sp. isolate 68, complete genome) position: , mismatch: 8, identity: 0.75

ggggcggctgacgttgaacaagtatcagaact	CRISPR spacer
gtcggccctgactctgaacaagtatcagaaca	Protospacer
*  *   ***** .*****************

23. spacer 4.20|1272679|32|LR134476|CRISPRCasFinder,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 8, identity: 0.75

tgggcttctattcacgtgccgaagacggtgac	CRISPR spacer
cgggcttctactcacgggccgaagaacgtctg	Protospacer
.*********.***** ********  **

24. spacer 4.20|1272679|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.75

tgggctt---ctattcacgtgccgaagacggtgac	CRISPR spacer
---actttccctattcacttgccgcagacggtgcg	Protospacer
   .***   ******** ***** ********

25. spacer 4.29|1273228|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NC_011887 (Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence) position: , mismatch: 8, identity: 0.75

cagattctcagtgagggcgatgtcggccagac	CRISPR spacer
ctccggctcggtgagggcgatatcggccaggc	Protospacer
*     ***.***********.********.*

26. spacer 4.14|1272312|32|LR134476|CRISPRCasFinder,CRT matches to MG945777 (UNVERIFIED: Microviridae sp. isolate 3995-1801, complete genome) position: , mismatch: 9, identity: 0.719

catgactgc----gacgccgttagcgtactgtaatt	CRISPR spacer
----gttccgccggaggcctttagcgtactgtaatt	Protospacer
    ..* *    ** *** ****************

27. spacer 4.16|1272434|32|LR134476|CRISPRCasFinder,CRT matches to NC_010408 (Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1, complete sequence) position: , mismatch: 9, identity: 0.719

atacgttttccgcttgcctcgacggccagacg	CRISPR spacer
ggagcgtttccgtttgcctcgacgggcagcag	Protospacer
. *   ******.************ ***  *

28. spacer 4.18|1272557|32|LR134476|CRISPRCasFinder,CRT matches to NC_023143 (Phaeobacter gallaeciensis DSM 26640 plasmid pGal_G40, complete sequence) position: , mismatch: 9, identity: 0.719

cataatctgggcgatgatttcatgccgcacga	CRISPR spacer
gaggttctgggcgatgatatcttgccgccggg	Protospacer
 * . ************* ** ******  *.

29. spacer 4.18|1272557|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP010721 (Phaeobacter piscinae strain P18 plasmid pP18_f, complete sequence) position: , mismatch: 9, identity: 0.719

cataatctgggcgatgatttcatgccgcacga	CRISPR spacer
gaggttctgggcgatgatatcttgccgccagg	Protospacer
 * . ************* ** ******  *.

30. spacer 4.18|1272557|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP010703 (Phaeobacter inhibens strain P24 plasmid pP24_g, complete sequence) position: , mismatch: 9, identity: 0.719

cataatctgggcgatgatttcatgccgcacga	CRISPR spacer
gaggttctgggcgatgatatcttgccgccggg	Protospacer
 * . ************* ** ******  *.

31. spacer 4.18|1272557|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP010594 (Phaeobacter gallaeciensis strain P11 plasmid pP11_f, complete sequence) position: , mismatch: 9, identity: 0.719

cataatctgggcgatgatttcatgccgcacga	CRISPR spacer
gaggttctgggcgatgatatcttgccgccggg	Protospacer
 * . ************* ** ******  *.

32. spacer 4.27|1273106|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021043 (Phaeobacter gallaeciensis strain P129 plasmid pP129_c, complete sequence) position: , mismatch: 9, identity: 0.719

tatcttccagatcaccagaggcttcagcctgt	CRISPR spacer
cgggtaccagatctccagaggcttccgccagc	Protospacer
..  * ******* *********** *** *.

33. spacer 4.27|1273106|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010676 (Phaeobacter gallaeciensis strain P75 plasmid pP75_c, complete sequence) position: , mismatch: 9, identity: 0.719

tatcttccagatcaccagaggcttcagcctgt	CRISPR spacer
cgggtaccagatctccagaggcttccgccagc	Protospacer
..  * ******* *********** *** *.

34. spacer 4.27|1273106|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NC_023139 (Phaeobacter gallaeciensis DSM 26640 plasmid pGal_C110, complete sequence) position: , mismatch: 9, identity: 0.719

tatcttccagatcaccagaggcttcagcctgt	CRISPR spacer
cgggtaccagatctccagaggcttccgccagc	Protospacer
..  * ******* *********** *** *.

35. spacer 4.27|1273106|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010591 (Phaeobacter gallaeciensis strain P11 plasmid pP11_c, complete sequence) position: , mismatch: 9, identity: 0.719

tatcttccagatcaccagaggcttcagcctgt	CRISPR spacer
cgggtaccagatctccagaggcttccgccagc	Protospacer
..  * ******* *********** *** *.

36. spacer 4.30|1273289|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 9, identity: 0.719

atgagagactgcggcatcggcagccgaaacac	CRISPR spacer
atgagtgactgcgccatcggcagcaagggcga	Protospacer
***** ******* ********** ....*.

37. spacer 4.31|1273350|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NC_004900 (Rhodococcus sp. B264-1 plasmid pB264, complete sequence) position: , mismatch: 9, identity: 0.719

gcccgcgatccgatgacgctggcctacccgct	CRISPR spacer
ggacagcatccggggacgctggcctacccgga	Protospacer
*  *.  *****. ****************

38. spacer 4.35|1273594|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017104 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence) position: , mismatch: 9, identity: 0.719

tggtcaccacgattgggcacgtcacttccacg	CRISPR spacer
ggcccaccacgattgagcgcgtcacttacgac	Protospacer
 * .***********.**.******** *.

39. spacer 4.36|1273655|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017104 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence) position: , mismatch: 9, identity: 0.719

tggtcaccacgattgggcacgtcacttccacg	CRISPR spacer
ggcccaccacgattgagcgcgtcacttacgac	Protospacer
 * .***********.**.******** *.

40. spacer 4.11|1272129|32|LR134476|CRISPRCasFinder,CRT matches to NZ_CP010857 (Marinovum algicola DG 898 plasmid pMaD2, complete sequence) position: , mismatch: 10, identity: 0.688

ggcttgtctttctcgccgtagagggtgcgccg	CRISPR spacer
cgagaccgtttctcgcggtagaggctgcgcca	Protospacer
 *    . ******** ******* ******.

41. spacer 4.18|1272557|32|LR134476|CRISPRCasFinder,CRT matches to AP022674 (Sphingomonas sp. HMP9 plasmid pHMP9 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

cataatctgggcgatgatttcatgccgcacga	CRISPR spacer
ggcacactgggcgaagagttcatgccgcagct	Protospacer
 ..*  ******** ** ***********

42. spacer 4.28|1273167|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to KY697807 (Microcystis phage MACPNOA1, complete genome) position: , mismatch: 10, identity: 0.688

cgtgaccagcttgagcagtcgaacgagaaact	CRISPR spacer
ccgattgcgcttgagcaggcgagcgagaaaca	Protospacer
*  . .  ********** ***.********

43. spacer 4.30|1273289|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040765 (Paracoccus sp. 2251 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atgagagactgcggcatcggcagccgaaacac	CRISPR spacer
ggcagaggctgcggtatcggcagccgccatgt	Protospacer
.  ****.******.***********  *...

44. spacer 4.31|1273350|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gcccgcgatccgatgacgctggcctacccgct	CRISPR spacer
gtgtccgatccgacgccgctggcctaccgctc	Protospacer
*. . ********.* ************  ..

45. spacer 4.30|1273289|32|LR134476|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 11, identity: 0.656

atgagagactgcggcatcggcagccgaaacac	CRISPR spacer
cgcggagagtgcggcagcggcagccgacgttg	Protospacer
   .**** ******* ********** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

982880 : 999428

Arthrobacter_phage(27.27%)

portal,capsid,tRNA,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI13211.1\|982880_986249_-	Phage-related protein	A0A222ZEP9	Arthrobacter_phage	1.2e-44	40.4
VEI13212.1\|986297_986654_-	Uncharacterised protein	A0A2H4PEX5	Gordonia_phage	1.0e-10	38.3
VEI13213.1\|986698_986983_-	Uncharacterised protein	NA	NA	NA	NA
VEI13214.1\|987081_987633_-	Uncharacterised protein	A0A222ZEQ0	Arthrobacter_phage	3.1e-25	41.0
VEI13215.1\|987635_987779_-	Uncharacterised protein	NA	NA	NA	NA
VEI13216.1\|987796_988186_-	Uncharacterised protein	NA	NA	NA	NA
VEI13217.1\|988216_988456_-	Uncharacterised protein	NA	NA	NA	NA
VEI13218.1\|988452_988824_-	Uncharacterised protein	NA	NA	NA	NA
VEI13219.1\|988816_989317_-	Uncharacterised protein	V5R8Y4	Arthrobacter_phage	1.9e-26	51.7
VEI13220.1\|989343_989490_-	Uncharacterised protein	NA	NA	NA	NA
VEI13221.1\|989489_990413_-\|capsid	phage major capsid protein, HK97 family	R4JKV8	Mycobacterium_phage	2.3e-70	48.6
VEI13222.1\|990418_990913_-	Uncharacterised protein	A0A2P1CI77	Actinomyces_phage	1.1e-05	43.9
VEI13223.1\|991019_991307_-	Uncharacterised protein	NA	NA	NA	NA
VEI13224.1\|991291_992485_-	Uncharacterised protein	A0A2P1CG55	Mycobacterium_phage	1.1e-11	31.9
VEI13225.1\|992462_993875_-\|portal	Phage portal protein, SPP1 Gp6-like	A0A2H4J2P6	uncultured_Caudovirales_phage	1.3e-75	40.1
VEI13226.1\|993871_995380_-\|terminase	Phage terminase-like protein, large subunit	R4TBA9	Mycobacterium_phage	1.6e-68	32.7
VEI13227.1\|995336_995744_-	Uncharacterised protein	NA	NA	NA	NA
VEI13228.1\|995898_996213_-	Uncharacterised protein	A0A1W6JRD4	Corynebacterium_phage	1.8e-06	44.1
VEI13229.1\|996323_996983_-	Uncharacterised protein	NA	NA	NA	NA
VEI13230.1\|997271_997655_-	Uncharacterised protein	NA	NA	NA	NA
VEI13231.1\|997642_998068_-	Uncharacterised protein	NA	NA	NA	NA
VEI13232.1\|998081_999428_-\|tRNA	N-formylmethionyl-tRNA deformylase	A0A1L6BZE2	Pasteurella_phage	3.8e-130	52.0

DBSCAN-SWA_2

1036262 : 1045864

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI13283.1\|1036262_1037858_+	Probable type I restriction enzyme BthVORF4518P M protein	A0A2H4PQP4	Staphylococcus_phage	6.0e-106	43.9
VEI13284.1\|1037854_1038856_+	Virulence protein	Q9JMN3	Wolbachia_phage	8.2e-69	44.8
VEI13285.1\|1038852_1040007_+	Type I restriction enzyme specificity protein MPN_089	NA	NA	NA	NA
VEI13286.1\|1040003_1043051_+	Type I restriction enzyme EcoR124II R protein	A0A220A398	Liberibacter_phage	1.9e-23	22.8
VEI13287.1\|1043059_1044277_-\|tRNA	Queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.3e-55	32.6
VEI13288.1\|1044296_1045025_-	conserved hypothetical integral membrane protein	A0A1W7AG82	Streptococcus_virus	1.9e-19	29.4
VEI13289.1\|1045204_1045864_-	Deoxyguanosine kinase	C1KFI3	Lactobacillus_virus	1.0e-35	42.7

DBSCAN-SWA_3

1656504 : 1716806

Erysipelothrix_phage(40.91%)

protease,head,portal,holin,capsid,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI13795.1\|1656504_1657677_+\|protease	ATP-dependent protease Lon	NA	NA	NA	NA
VEI13796.1\|1657673_1658228_-	Uncharacterised protein	NA	NA	NA	NA
VEI13797.1\|1658437_1661530_+	Uncharacterised protein family (UPF0182)	NA	NA	NA	NA
VEI13798.1\|1661526_1662120_-	Uncharacterised protein	NA	NA	NA	NA
VEI13799.1\|1662162_1662408_-	Uncharacterised protein	NA	NA	NA	NA
VEI13800.1\|1662640_1662991_-	Uncharacterised protein	NA	NA	NA	NA
VEI13801.1\|1663130_1663646_+	Uncharacterised protein	NA	NA	NA	NA
VEI13802.1\|1663572_1664775_-	Arabinose efflux permease	NA	NA	NA	NA
VEI13803.1\|1664777_1665092_+	Uncharacterised protein	NA	NA	NA	NA
VEI13804.1\|1665270_1665636_+	Uncharacterised protein	NA	NA	NA	NA
VEI13805.1\|1665648_1667460_-	Putative sulfate transporter ychM	A0A2H4J153	uncultured_Caudovirales_phage	3.9e-29	26.2
VEI13806.1\|1668189_1668405_-	Uncharacterised protein	NA	NA	NA	NA
VEI13807.1\|1668407_1668686_-	Uncharacterised protein	NA	NA	NA	NA
VEI13808.1\|1668829_1669240_-	Protein of uncharacterised function (DUF3151)	NA	NA	NA	NA
VEI13809.1\|1669609_1670965_+	LIV-II	NA	NA	NA	NA
VEI13810.1\|1670999_1672103_-	Calcium/proton antiporter	NA	NA	NA	NA
VEI13811.1\|1672380_1673076_+	succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family	NA	NA	NA	NA
VEI13812.1\|1673063_1675196_+	Fumarate reductase flavoprotein subunit	NA	NA	NA	NA
VEI13813.1\|1675192_1675945_+	Fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
VEI13814.1\|1675961_1676405_-	Inner membrane protein ybaN	NA	NA	NA	NA
VEI13815.1\|1676608_1677841_+	Alkanal monooxygenase alpha chain	NA	NA	NA	NA
VEI13816.1\|1677840_1678521_+	FMN reductase (NADPH)	NA	NA	NA	NA
VEI13817.1\|1678533_1679094_-	Dihydrofolate reductase	A0A1B2IAU3	Erwinia_phage	6.5e-23	41.7
VEI13818.1\|1679093_1679897_-	Thymidylate synthase	A6M9A2	Geobacillus_virus	1.1e-97	63.8
VEI13819.1\|1680029_1680530_-	Protein of uncharacterised function (DUF2505)	NA	NA	NA	NA
VEI13820.1\|1680598_1681999_+	Probable sensor histidine kinase pdtaS	NA	NA	NA	NA
VEI13821.1\|1682062_1682305_-	Transcription factor WhiB	A0A2P1JRB7	Mycobacterium_phage	7.6e-13	51.4
VEI13822.1\|1682402_1684298_-	Uncharacterised protein	NA	NA	NA	NA
VEI13823.1\|1684298_1685027_-	Macrolide export ATP-binding/permease protein MacB	NA	NA	NA	NA
VEI13824.1\|1685023_1685719_-	Nitrogen regulation protein C	NA	NA	NA	NA
VEI13825.1\|1685711_1686899_-	Sensor histidine kinase desK	NA	NA	NA	NA
VEI13826.1\|1686903_1687719_-	Uncharacterised ACR, COG2135	A0A2H4J5W2	uncultured_Caudovirales_phage	8.5e-16	28.2
VEI13827.1\|1687821_1690389_+	DNA ligase	A0A0A8J9A9	Ralstonia_phage	2.5e-77	37.4
VEI13828.1\|1690475_1690817_+	anaerobic benzoate catabolism transcriptional regulator	NA	NA	NA	NA
VEI13829.1\|1690816_1691644_+	Domain of uncharacterised function (DUF955)	NA	NA	NA	NA
VEI13830.1\|1691647_1692250_+	Uncharacterised protein	NA	NA	NA	NA
VEI13831.1\|1692365_1692626_-	Antitoxin VapB47	NA	NA	NA	NA
VEI13832.1\|1692791_1693304_-	Uncharacterised protein	NA	NA	NA	NA
VEI13833.1\|1693627_1694734_+	Uncharacterised protein	Q6NE04	Leptospira_phage	1.9e-34	36.4
VEI13834.1\|1694940_1696029_+	Uncharacterised protein	NA	NA	NA	NA
VEI13835.1\|1696046_1697630_-	Transposon Tn3 resolvase	Q6DMS5	Streptococcus_phage	9.5e-120	44.0
VEI13836.1\|1697629_1699126_-	Transposon Tn3 resolvase	A0A2K5B2B4	Erysipelothrix_phage	8.8e-59	38.8
VEI13837.1\|1699172_1699364_-	Uncharacterised protein	NA	NA	NA	NA
VEI13838.1\|1699360_1699774_-	Uncharacterised protein	NA	NA	NA	NA
VEI13839.1\|1699951_1700794_-	N-acetyl-anhydromuranmyl-L-alanine amidase	A0A1D8ETE4	Propionibacterium_phage	4.0e-61	65.6
VEI13840.1\|1700797_1701256_-\|holin	Phage-related holin (Lysis protein)	A0A2K5B2A2	Erysipelothrix_phage	7.6e-22	57.0
VEI13841.1\|1701336_1701516_-	Uncharacterised protein	NA	NA	NA	NA
VEI13842.1\|1701512_1701938_-	Uncharacterised protein	A0A2K9VDF8	Lactobacillus_phage	1.4e-14	35.3
VEI13843.1\|1701968_1705355_-	Phage-related protein	A0A1B0T695	Bacillus_phage	4.9e-73	39.0
VEI13844.1\|1705416_1706109_-	Phage-related protein	NA	NA	NA	NA
VEI13845.1\|1706108_1708661_-	Phage-related protein	A0A2K9V3J7	Faecalibacterium_phage	1.2e-39	39.8
VEI13846.1\|1708882_1709296_-	Uncharacterised protein	A0A2K5B295	Erysipelothrix_phage	1.3e-25	50.4
VEI13847.1\|1709314_1709914_-\|tail	phage major tail protein, phi13 family	A0A2K5B294	Erysipelothrix_phage	8.3e-77	74.7
VEI13848.1\|1709927_1710281_-	Uncharacterised protein	A0A2K5B293	Erysipelothrix_phage	7.7e-22	41.1
VEI13849.1\|1710277_1710712_-	phage protein, HK97 gp10 family	NA	NA	NA	NA
VEI13850.1\|1710715_1711045_-\|head,tail	Bacteriophage head-tail adaptor	NA	NA	NA	NA
VEI13851.1\|1711044_1711374_-\|head,tail	Phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	2.1e-26	55.0
VEI13852.1\|1711415_1712633_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A2I4R671	Erysipelothrix_phage	7.0e-131	58.5
VEI13853.1\|1712652_1713480_-\|protease	ATP-dependent Clp protease proteolytic subunit	E4ZFM4	Streptococcus_phage	1.1e-58	61.6
VEI13854.1\|1713480_1714803_-\|portal	phage portal protein, HK97 family	A0A2K5B287	Erysipelothrix_phage	6.4e-170	72.8
VEI13855.1\|1714880_1715126_-	Uncharacterised protein	NA	NA	NA	NA
VEI13856.1\|1715210_1716806_-\|terminase	Phage terminase-like protein, large subunit	A0A2K5B285	Erysipelothrix_phage	4.9e-233	73.8

DBSCAN-SWA_4

1720385 : 1733993

Erysipelothrix_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI13863.1\|1720385_1721570_-	S-adenosylmethionine synthase	A0A2K5B278	Erysipelothrix_phage	1.1e-101	53.6
VEI13864.1\|1721659_1722232_-	Uncharacterised protein	A0A2K5B277	Erysipelothrix_phage	4.1e-49	50.8
VEI13865.1\|1722334_1723309_+	Uncharacterised protein	NA	NA	NA	NA
VEI13866.1\|1723553_1723970_+	Uncharacterised protein	NA	NA	NA	NA
VEI13867.1\|1724025_1724487_-	Uncharacterised protein	NA	NA	NA	NA
VEI13868.1\|1724492_1725863_-	SNF2 family N-terminal domain	A0A1W6JQF1	Corynebacterium_phage	2.1e-152	59.9
VEI13869.1\|1725843_1726164_-	VRR-NUC domain	A0A1S7FZ22	Listeria_phage	2.4e-14	43.7
VEI13870.1\|1726253_1728509_-	Uncharacterized conserved protein	A0A1B0RXC5	Streptococcus_phage	3.1e-185	45.6
VEI13871.1\|1728505_1728937_-	Uncharacterised protein	A0A2K5B270	Erysipelothrix_phage	1.8e-33	51.1
VEI13872.1\|1728938_1729700_-	Uncharacterized phage-encoded protein	A0A1Q1PVZ8	Staphylococcus_phage	1.0e-55	45.3
VEI13873.1\|1729897_1730032_+	Uncharacterised protein	NA	NA	NA	NA
VEI13874.1\|1730016_1731978_-	DNA polymerase I, thermostable	A0A1W6JQ98	Corynebacterium_phage	1.9e-207	55.1
VEI13875.1\|1732060_1732264_-	Uncharacterised protein	NA	NA	NA	NA
VEI13876.1\|1732279_1732831_-	Protein of uncharacterised function (DUF2815)	A0A2K5B2A9	Erysipelothrix_phage	3.8e-60	66.1
VEI13877.1\|1732856_1733993_-	Protein of uncharacterised function (DUF2800)	A0A1W6JQ97	Corynebacterium_phage	1.6e-121	60.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134476

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection