CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134480	Bordetella bronchiseptica strain NCTC8344 genome assembly, chromosome: 1	6 crisprs	csa3,DEDDh,cas3,DinG	2	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134480_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134480_1

149184-149268

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of LR134480_1

>merge|LR134480|1|149184-149268|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCAGGCTAGTGTTCATGGCGTATGACAGTGTGCCTGTCCCCGCGGGGACAG

>LR134480|1|1|149184-149268|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCAGGCTAGTGTTCATGGCGTATGACAG
TGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134480.1\|VEI23701.1\|151019_151790_-\|transport-system-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213223
LR134480.1\|VEI23703.1\|151792_152800_-\|Phosphate-import-protein-phnD-precursor	unknown	unknown	gnl\|CDD\|270291
LR134480.1\|VEI23677.1\|138478_139243_+\|membrane-protein/O-PS-assembly/export-protein	unknown	unknown	unknown
LR134480.1\|VEI23681.1\|139807_140146_-\|arsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
LR134480.1\|VEI23695.1\|146362_147430_+\|cell-division-protein	unknown	unknown	gnl\|CDD\|236686
LR134480.1\|VEI23716.1\|156970_157969_+\|thiamine-monophosphate-kinase	unknown	unknown	gnl\|CDD\|235583
LR134480.1\|VEI23693.1\|145534_146155_-\|N6-adenine-specific-methyltransferase	unknown	unknown	gnl\|CDD\|223813
LR134480.1\|VEI23687.1\|143484_144702_-\|transporter	unknown	unknown	gnl\|CDD\|281578
LR134480.1\|VEI23685.1\|143090_143477_+\|Uncharacterized-Fe-S-protein	unknown	unknown	gnl\|CDD\|281474
LR134480.1\|VEI23712.1\|155913_156441_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
LR134480.1\|VEI23707.1\|153781_154579_-\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|273651
LR134480.1\|VEI23699.1\|150132_151032_-\|binding-protein-dependent-transport-system-inner-membrane-protein	unknown	unknown	gnl\|CDD\|273441
LR134480.1\|VEI23683.1\|140574_143094_+\|putative-assembly-protein	unknown	unknown	gnl\|CDD\|236772
LR134480.1\|VEI23697.1\|149314_150136_-\|binding-protein-dependent-transport-system-permease	unknown	unknown	gnl\|CDD\|273441
LR134480.1\|VEI23679.1\|139304_139811_-\|Activator-of-Hsp90-ATPase-homolog-1-like-protein	unknown	unknown	gnl\|CDD\|176905
LR134480.1\|VEI23705.1\|152948_153776_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
LR134480.1\|VEI23691.1\|145004_145514_-\|phosphopantetheine-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
LR134480.1\|VEI23714.1\|156412_156913_+\|transcription-antitermination-protein-NusB	unknown	unknown	gnl\|CDD\|234686
LR134480.1\|VEI23689.1\|144698_144950_-\|ferredoxin	unknown	unknown	gnl\|CDD\|319871
LR134480.1\|VEI23709.1\|154724_155900_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|237587

Protein	Function_ID	Function_description	E-value
LR134480.1\|VEI23701.1\|151019_151790_-\|transport-system-ATP-binding-protein	gnl\|CDD\|213223	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	6.7095e-115
LR134480.1\|VEI23703.1\|151792_152800_-\|Phosphate-import-protein-phnD-precursor	gnl\|CDD\|270291	cd13573, PBP2_PnhD_3, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold. This subfamily includes putative periplasmic binding component of an ABC transport system similar to alkylphosphonate binding domain PnhD. These domains are found in PnhD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.92107e-151
LR134480.1\|VEI23683.1\|140574_143094_+\|putative-assembly-protein	gnl\|CDD\|236772	PRK10833, PRK10833, putative assembly protein; Provisional.	2.80816e-30
LR134480.1\|VEI23681.1\|139807_140146_-\|arsR-family-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	2.51065e-15
LR134480.1\|VEI23695.1\|146362_147430_+\|cell-division-protein	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	3.07301e-173
LR134480.1\|VEI23716.1\|156970_157969_+\|thiamine-monophosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	1.12252e-133
LR134480.1\|VEI23693.1\|145534_146155_-\|N6-adenine-specific-methyltransferase	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.53382e-57
LR134480.1\|VEI23687.1\|143484_144702_-\|transporter	gnl\|CDD\|281578	pfam03594, BenE, Benzoate membrane transport protein.	3.0161e-112
LR134480.1\|VEI23685.1\|143090_143477_+\|Uncharacterized-Fe-S-protein	gnl\|CDD\|281474	pfam03476, MOSC_N, MOSC N-terminal beta barrel domain. This domain is found to the N-terminus of pfam03473. The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.	7.15282e-08
LR134480.1\|VEI23712.1\|155913_156441_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	4.04555e-65
LR134480.1\|VEI23714.1\|156412_156913_+\|transcription-antitermination-protein-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	1.02433e-51
LR134480.1\|VEI23699.1\|150132_151032_-\|binding-protein-dependent-transport-system-inner-membrane-protein	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	4.06156e-90
LR134480.1\|VEI23707.1\|153781_154579_-\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|273651	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB. This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class II subfamilies are characterized by a domain that is located between the second and third conserved catalytic motifs of the superfamily domain. The IIB subfamily is distinguished from the IIA subfamily (TIGR01460) by homology and the predicted secondary structure of this domain by PSI-PRED. The IIB subfamily's Class II domain has the following predicted structure: Helix-Sheet-Sheet-(Helix or Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing OMNI\|TC0379 and OMNI\|SA2196 whose relationship to the other groups is unclear. [Unknown function, Enzymes of unknown specificity].	7.51884e-15
LR134480.1\|VEI23697.1\|149314_150136_-\|binding-protein-dependent-transport-system-permease	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.08607e-97
LR134480.1\|VEI23679.1\|139304_139811_-\|Activator-of-Hsp90-ATPase-homolog-1-like-protein	gnl\|CDD\|176905	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	4.43023e-82
LR134480.1\|VEI23705.1\|152948_153776_-\|transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	9.15813e-52
LR134480.1\|VEI23691.1\|145004_145514_-\|phosphopantetheine-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	3.03384e-101
LR134480.1\|VEI23689.1\|144698_144950_-\|ferredoxin	gnl\|CDD\|319871	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein. This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.	1.53234e-06
LR134480.1\|VEI23709.1\|154724_155900_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|237587	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0

>LR134480.1|VEI23695.1|146362_147430_+|cell-division-protein
MPAPQPEPQPEPQPQQPPEPAPPAMASPPVAEPQPSVAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD
>LR134480.1|VEI23693.1|145534_146155_-|N6-adenine-specific-methyltransferase
MKPSRPGSKPIRIVGGLYRRTLIPVADAPGLRPTPDRVRETLFNWLNHLWGGEFADKRVLDLFAGSGALGFEAASRGAGQVQMVERDRGAAAALRTLRDKLQAGAVRIHAGDAMQVIERMDASRFDLVLLDPPFGQGWLERLWPLLPAVLAEDGLVYVESETAPAPPAGFELLREGKAGAVHYRLFQFAAMRKSMNNPALEDGASH
>LR134480.1|VEI23691.1|145004_145514_-|phosphopantetheine-adenylyltransferase
MIIAVYPGTFDPLTRGHEDLVRRAATLFDKVVVGIAHSRNKKPFFTIEERVDIAREVLGHYPNVEVHSFGGLLKDFVRDQNGRVIIRGLRAVSDFEYEFQMAGMNRHLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVERWLQAKAKERREQSAQGGA
>LR134480.1|VEI23689.1|144698_144950_-|ferredoxin
MALKITEECINCDVCEPQCPNEAISMGADYYVIDPDRCTECVGHHDEPQCKVVCPVECIELHPQWQEGQEQLMAKYRRLTGAA
>LR134480.1|VEI23687.1|143484_144702_-|transporter
MNGADSASSPLAARRPVTGALSLSAIVAGLVAVLVSFGGTAVLMVQAGHAAGLDAARIGSWLGSICLALGVGGALISLRSRMPVVFAWSTPGAALLVTALVGVPFNQAVGAFVLAAALTLACGVFGWIDPIVRRIPAELAAAMLAGVLLNFGMGIFGSIAAQPVLVLSMCAAYLLGRRWAPRFAVLAVLVVGLAAASSLDLLRLGHVQWAWTEFVWTTPSFTWQAAISLGIPLFVVAMASQNLPGLAILQAAGYRPPASRLVGLTGLAGLLAAPFGAHSVTLGAIIAALCAGPEAHADPGRRYVAAATYGLTYVLLSVAAGAVAVFFQALPGALIAALAGLALLGAIMGGMTTAMADPQRREAALVTLLATASGISFWGIGSAFWGLAAGLATHGALAWRRARSA
>LR134480.1|VEI23685.1|143090_143477_+|Uncharacterized-Fe-S-protein
MSTTAYQPIAECGATTQSEAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMAEVRWPS
>LR134480.1|VEI23683.1|140574_143094_+|putative-assembly-protein
MKTWFKRIVIGLVVLVVVAVVGLAIFLLTFDPNAYKYKLEEAVQARYERTLNIEGEIELSLFPRIGLAVQGVSLSEPNSPDVFASIDSMRLAVAVWPLLSNSLVVDHVTINGFKARVIRGKDGHFNFENLVGGSVQSTDVPGNAAEATAGAITGTAQAIVNGTVSTPKSMQIDIAGLDLKDGEIQLQDAMSGMAVAITKLNAATGRVTYNQPFDVSLSARVEGGNPRLDAGLTGQAQLTLDPLAKRYAAQRLDLRMEGRLPGAQAKSLAARGNVAFNGMTSSLDVAGLEILFQGDIVDTATKLTNVEASVAMPKLAVDPHKTELQIDKLAVRAKGAMPGGPFELAVDAPALNISPTNASGDALSGRVRTQELDASFGLNGISGNAGELDIKEAKLDSTLKQGERVVKSAFASPVTLNLLQRSIGLSALKGDVNITDPGLPKGSLQIPVIGSVNANLLKDQANARINAVLEGGKFDLSADIVALSAVPRVTFALAVDTLDLDKLAPPAGASAPPKPAGDGKQDESKPPAKPQPAPAPAAADDSINLSGLVGPTASGTIKIGQLVMRGLKAEQVAANIKLEKGKLDISTLTAALYGGKLGGVMSVDAVNGNQLVAKMSLAGIAIQPLLSDLAGKDTLSGTGSLAFDLKTAGANTYAMKSGLAGTMQVRLRDGAIKGINVAQTLRELKAMFRGEAHDPTVQDDQTRQTDFTSLESDLVFNKGVATVKRLDMAAPLLRVNQGNPANIDFVRSELDFVARVRVVNTSTGQDGKDLAELRNLTIPLLITGPFDKPVYTLQWREVAGEALKRGLEKQLKEALTGGEGASGSPAKNIDKALKGILGK
>LR134480.1|VEI23681.1|139807_140146_-|arsR-family-transcriptional-regulator
MPNQAAQLSQVFQALSDPTRRAVLERLCQGSAAMSELARPFNMALPSFSQHLDVLERCGLVRSRKSGRVRIYTLAPQPLGMAEHWMTRQRAIWERRLDQLDLYLQDLKEQKR
>LR134480.1|VEI23679.1|139304_139811_-|Activator-of-Hsp90-ATPase-homolog-1-like-protein
MTRQHSTQPDPKLDLVLERTIDMPPALVWQAWTQPEHIKHWLTPAPWQTVRCDVDLRPGGRFRFVMRSPEGEEHTHDCCYLEIVEGSRLVWTNALLPGFRPAGGGGDVPAFTAVIRIEPHDQGTRYTATAMHGTQAGCRQHSDMGFHDGWGAALDQLVAHARNMQQAS
>LR134480.1|VEI23677.1|138478_139243_+|membrane-protein/O-PS-assembly/export-protein
MIKKRYLATAVVALAVAVAAALYARQDEPEHFDEVVLQCLDDQAMSTVRRTGSVDGILPACQPELAEVLGEDFGAVDEPTLRAVLATVAAANFAEYGSSSAVAYEAIEKSQHLNCGNLVFLMGYLYGGLKEKGIRPIGVDGGAVGNHAQIMYKSGNNRLLLDPTTGVVAAITFNKLMSGQPVPEEQVRVFRVKAKTIDSFRDRVYRAVVGGGYLPSDLMYMHESLWELKTKGSSSVYFTPGGITVRKKLAQAAG
>LR134480.1|VEI23697.1|149314_150136_-|binding-protein-dependent-transport-system-permease
MNTSVTSLEPGHPRTWQRYSGGQKALRFMLYLLLVAAIVQAVRSVEVIPEFLYDAPEQMADLLRRMWPIDWSYYPEGVHAALVETLHIATLGTILSVGMAVPVGLLAANNLTPSRTINMLARLILVSSRSVNSLVWALLFIAIFGPGALAGTLAIAFRSIGFVGKLVGEAIEEAQRGPIEALTATGASKAAVLWYGYWPQIRPSFWSIVLLRWDINVRESAVLGLVGAGGIGMALDTALNLFQWDRVALVLAAIFIVVVAAEIVITQARKRIL
>LR134480.1|VEI23699.1|150132_151032_-|binding-protein-dependent-transport-system-inner-membrane-protein
MAGVTVRTANMARRPFSLSWRAKTGVLLVVLYTFYAAAQLDFSWARFETGLGHAATFLARMFPPNFEKPDTLWKGIAESLEIAVLASVLGILLSLPIGLLGARNLMPAWASWPARALVALCRALHPVIVAILFVKAVGFGALAGILALTVASIGFIGKLFTEAIEEISLKQVEAVRASGASFGNVIIFGVLPQVFARFVGFATYQFDSNLRNSTMVGIVGAGGIGGTLFSAFQRFDYDFVAAILLTLIAIIMLGEILAGFVRKVFLDNMGFERILQRRFTAARGLGSTTPLARKGEVDE
>LR134480.1|VEI23701.1|151019_151790_-|transport-system-ATP-binding-protein
MATSLRITGLVKEYRAGKPVLNGIDLDIAGQGLTAIIGPSGTGKSTLLRCINRLIEPTSGEIVLKDAEGTVDLARVRGQSLRRARRRIGMVFQEYNLVERLTVMENLLTGRLGYTSALNAWMRRFDPADIERAFQLLDTVGLAGFADQRADALSGGQRQRVGIARALMQRPQLLLADEPTSSLDPKTSVEIMELLTEQGSVNGIPVLVNIHDVELARRYANRIVGMSGGHVVYDGDGKGLDATMLKTIYGGESWLE
>LR134480.1|VEI23703.1|151792_152800_-|Phosphate-import-protein-phnD-precursor
MRAKRLLQAAAVTALIFGSYAAQAADAACSNRGDLDNMYCDANKDLVADTPTDKSKLKTPSTLVFTYTPVEDPAVYEDIFKPFTKHLSECTGKRVVFYQVQSNAAEIEAMRSGRLHVGGFSTGPTAFAVNIAGAVPFAVKGYADEFQGYNLIVIVKKDSPYQKLTDLKGKKLAHTAPSSNSGHMAPVALFPKEGLTPDKDYKVIFSGKHDQSVMGVNSGDYDAAAVASDVFKRMAERGQVKEEDFRVIYRSEKFPTSSFAYAHDLEPAFRDKMLKCFYDYRFPDEMKKAFDGADRFYPVTYQKDWAIVREVAESGGEKFNRAAYDRETAKSKGKQ
>LR134480.1|VEI23705.1|152948_153776_-|transcriptional-regulator
MSAAKSTAKPAAAPGNDGRRSIQSVEVGFPLLAALVDAGRPLTLRDLAGAAGMTSAKAHPYLVSFTRVGLVQQDTVTGQYELGPFALQMGLVSLQRLDPVRVALPEVDKLQSEIGHTLGIAVLGSHGPTMIHITEASYPVHVNMRKGTVMSMLHTATGQVFAAWLPPKVAEHYIAREDGDAAVIASLTPRKTTRANLDAMLADIRVHGMARALGNPLPGVDALSVPVFDHTGGIVLALTSLGPTGLFDASFTGAIARPLLACAQEISRKLGYRGN
>LR134480.1|VEI23707.1|153781_154579_-|haloacid-dehalogenase-like-hydrolase
MQALAAMPAPVAASVRIVLTDIDDTLTTEGRLPAGAYAALERLEQAGIVVVPITGRPAGWCDHIARMWPVRAVVGENGAFYYAYDRSARRMNAHYWADAATRAANRQALQAIRERVLREVPGTAVASDQDYRVADLAIDFCEDVPALPDGAVGRIVEIFHEAGAQAKVSSIHVNGWFGDYDKLTMTRTLFEREFGLNIDSALQHTLFIGDSPNDEPMFKFFPISVGVANIQSQLHRIQHRPAFVAAARGGDGFVEMAERLLANRG
>LR134480.1|VEI23709.1|154724_155900_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MSAQISSLNAGAAPESFGIASVPEIIAELRAGRIVILVDEEDRENEGDLVMAAEFVTPEAINFMVTHGRGLVCLTLTEERCRQLDLPLMASRNGTRYGTNFTQSIEAAEGVETGISAADRARTIQVAVARDAQPSDLVQPGHIFPVRAVPGGVLVRAGHTEAGCDLTAMGGLTPAAVICEILKPDGTMARLPDLVEFAREHKLKIGTIADLIQYRSEHESIIARMGERMMQTPWGDFRCIAYRDDATRSPHLALVHGNIDPERETLVRVHEPASLLDVLDTGASPHSWSVGQALHAIAASPAGVLVLMNCQSSTEHLFGQIANWAGPAERAAAQEGDRFGLRTYGIGAQILRDLNVGRMKLLARPRKMPSMAGFALTITGYDCAPPNLRND
>LR134480.1|VEI23712.1|155913_156441_+|6,7-dimethyl-8-ribityllumazine-synthase
MNPYILTPDLNGEGLHIGIVRARFNEEIGQAQLQACLEELGKLGVDERDVMVVSVPGALELGVALARMAESYEFDALIALGAVIRGETYHFEVVSNESAAAISRIALETGIPVANGVLTVDTDEQAQARAAGKGADCAQVAVEMANLAAALEPEEDDEDEDDEDEDFDDEEDDGR
>LR134480.1|VEI23714.1|156412_156913_+|transcription-antitermination-protein-NusB
MTTKKTTAADNAVQARANARSARRRAREFALQGVYAWLLRGGEGTQDAGEIDAHLRDAEDFSEADAQWFKTLLHGVLREAPVLRERFLPYIDRPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKLAADVRTAEVQAAPRR
>LR134480.1|VEI23716.1|156970_157969_+|thiamine-monophosphate-kinase
MASEFDLIARYFTRPAPDGVLGVGDDCALFPVPPGQQVATSTDLLIEGRHFFPDVDPQALGHKALAVNLSDLAAMGARPVGCLLGLALPGVDEAWLAAFARGFQALADTHACPLIGGDTTRAPQGLLAISVTVFGAVAPGHALRRAAAQPGDDVWVSGELGAADIAYRLLDRQLPADPLRLAATRAALEWPRPRVELGMALAGLARAGIDISDGLLQDLGHILAASGVAAELRYDALPVAAALAGLPAETVRRAALGGGDVYELCFTADPAHRQAIGQAAHGAGAPVSRIGRILAGQGLRVLDADGAPLGELPGGFDHFSDATDQPAPGRRP

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Crispr_ID: LR134480_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134480_2

553080-553169

Orphan

Consensus_repeat	Method
GGATCGGTGCCTGTCCCTGCGGGGACAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134480_2

>merge|LR134480|2|553080-553169|CRISPRCasFinder
GGATCGGTGCCTGTCCCTGCGGGGACAGGCACGCCGGGGAAGTGGCAGGCGTGGAGGTGGATCGGTGCCTGTCCCTGCGGGGACAGGCAC

>LR134480|2|2|553080-553169|CRISPRCasFinder
GGATCGGTGCCTGTCCCTGCGGGGACAGGCAC	GCCGGGGAAGTGGCAGGCGTGGAGGT
GGATCGGTGCCTGTCCCTGCGGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134480.1\|VEI24499.1\|546514_546946_-\|lipoprotein	unknown	unknown	unknown
LR134480.1\|VEI24534.1\|565640_567026_-\|catabolic-enzyme	unknown	unknown	gnl\|CDD\|377179
LR134480.1\|VEI24518.1\|554794_557449_+\|aconitate-hydratase	unknown	unknown	gnl\|CDD\|236445
LR134480.1\|VEI24497.1\|545620_546505_+\|hydrolase	unknown	unknown	gnl\|CDD\|223489
LR134480.1\|VEI24501.1\|547184_547688_+\|AhpC/TSA-family-protein	unknown	unknown	gnl\|CDD\|239311
LR134480.1\|VEI24528.1\|561787_563173_+\|fumarate-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|273816
LR134480.1\|VEI24516.1\|553671_554565_-\|carboxyvinyl-carboxyphosphonate-phosphorylmutase	unknown	unknown	gnl\|CDD\|119340
LR134480.1\|VEI24514.1\|552428_553019_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
LR134480.1\|VEI24524.1\|559610_560612_+\|Uncharacterized-GTP-binding-protein-YjiA	unknown	unknown	gnl\|CDD\|223597
LR134480.1\|VEI24532.1\|564614_565610_+\|putattive-exported-protein	unknown	unknown	gnl\|CDD\|270296
LR134480.1\|VEI24512.1\|551998_552304_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379321
LR134480.1\|VEI24530.1\|563169_564546_+\|catabolic-enzyme	unknown	unknown	gnl\|CDD\|377179
LR134480.1\|VEI24506.1\|549281_550157_-\|membrane-protein	unknown	unknown	unknown
LR134480.1\|VEI24495.1\|542165_545603_+\|Uncharacterized-protein-involved-in-outer-membrane-biogenesis	unknown	unknown	gnl\|CDD\|377502
LR134480.1\|VEI24526.1\|560749_561769_+\|putattive-exported-protein	unknown	unknown	gnl\|CDD\|270296
LR134480.1\|VEI24508.1\|550153_551161_-\|biotin-synthase	unknown	unknown	gnl\|CDD\|273075
LR134480.1\|VEI24510.1\|551629_551935_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379321
LR134480.1\|VEI24504.1\|547765_549166_+\|membrane-transport-protein	unknown	unknown	gnl\|CDD\|341030
LR134480.1\|VEI24520.1\|557473_558847_+\|dihydroorotase-like-protein	unknown	unknown	gnl\|CDD\|238627
LR134480.1\|VEI24522.1\|558880_559600_+\|hydrolase	unknown	unknown	gnl\|CDD\|238497

Protein	Function_ID	Function_description	E-value
LR134480.1\|VEI24534.1\|565640_567026_-\|catabolic-enzyme	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	6.11988e-64
LR134480.1\|VEI24518.1\|554794_557449_+\|aconitate-hydratase	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
LR134480.1\|VEI24497.1\|545620_546505_+\|hydrolase	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	6.22453e-65
LR134480.1\|VEI24501.1\|547184_547688_+\|AhpC/TSA-family-protein	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	1.07728e-77
LR134480.1\|VEI24528.1\|561787_563173_+\|fumarate-reductase-flavoprotein-subunit	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	1.66264e-55
LR134480.1\|VEI24516.1\|553671_554565_-\|carboxyvinyl-carboxyphosphonate-phosphorylmutase	gnl\|CDD\|119340	cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to form acetate and oxalate, an important pathway to produce oxalate in filamentous fungi. 2-methylisocitrate lyase (MICL) cleaves 2-methylisocitrate to pyruvate and succinate, part of the methylcitrate cycle for the alpha-oxidation of propionate.	5.98205e-95
LR134480.1\|VEI24514.1\|552428_553019_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.75019e-12
LR134480.1\|VEI24524.1\|559610_560612_+\|Uncharacterized-GTP-binding-protein-YjiA	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	4.74612e-64
LR134480.1\|VEI24532.1\|564614_565610_+\|putattive-exported-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	4.8166e-150
LR134480.1\|VEI24512.1\|551998_552304_+\|Uncharacterised-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	0.000118779
LR134480.1\|VEI24530.1\|563169_564546_+\|catabolic-enzyme	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	4.87839e-95
LR134480.1\|VEI24495.1\|542165_545603_+\|Uncharacterized-protein-involved-in-outer-membrane-biogenesis	gnl\|CDD\|377502	pfam05359, DUF748, Domain of Unknown Function (DUF748).	2.1767e-36
LR134480.1\|VEI24526.1\|560749_561769_+\|putattive-exported-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	3.91792e-114
LR134480.1\|VEI24508.1\|550153_551161_-\|biotin-synthase	gnl\|CDD\|273075	TIGR00433, biotin_synthase, biotin synthase. Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	8.7034e-175
LR134480.1\|VEI24510.1\|551629_551935_+\|Uncharacterised-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	0.00044027
LR134480.1\|VEI24504.1\|547765_549166_+\|membrane-transport-protein	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.13193e-92
LR134480.1\|VEI24520.1\|557473_558847_+\|dihydroorotase-like-protein	gnl\|CDD\|238627	cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.	3.34177e-142
LR134480.1\|VEI24522.1\|558880_559600_+\|hydrolase	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	3.08066e-39

>LR134480.1|VEI24514.1|552428_553019_+|TetR-family-transcriptional-regulator
MDTPSTNTTRDQLLDYAQKLIRTRGCNGFSYRDLADHVGVKTSSVHYYFPCKDDLLYEAVENYTGSALETLRGISPTLPAKERLDAYIAMVESHSCQADQLCLGGMLAAELNTLPERVRAALQAFFTVEENWLAKVLADGAREGTLRYASTPEKAARALFATVQGCLLGARLFQRPPDLREALGALYVQCGASPAH
>LR134480.1|VEI24512.1|551998_552304_+|Uncharacterised-protein
MNRIATALILSASVFGVAQAGELDYPPAIESANTLSHAQVQAELQAARTQGLMAAGEQDYPITAYAAASTVSREQVRDELAAARAQGLTESGELAYPPVAG
>LR134480.1|VEI24510.1|551629_551935_+|Uncharacterised-protein
MNRIATALILSASVFGVAQAGELDYPPAIESASALSHAQVQDELLAARAAGQMNSAELAYPPVVEQAATQVSRSQIRQELSAAKARGLDASGELDYPPVAG
>LR134480.1|VEI24508.1|550153_551161_-|biotin-synthase
MHTAYIPVPTPVRPPSAERWPLAAVAELFELPFLDLLHRAQQVHRQHFDANTVQLSSLLSIKTGGCPEDCAYCPQSAHYDTGVDADKLMPLDEVVRAARAAQANGAQRFCMGAAWRSPKPHHLEAVAEMIGAVKALGMETCVTLGMLRDGQAEQLKAAGLDYYNHNLDTAPEFYGKIISTRTYQDRLDTLQQVREAGINVCCGGIVGMGESRRDRAGLVAQLANMEPYPESVPINNLVQVEGTPLAGAETLDPFEFIRTIAVARITMPLAKVRLSAGRETMSDSEQALCFMAGANSIFYGDVLLTTGNPQVEADRWLLQRLGMRAEGLPCAAGQA
>LR134480.1|VEI24506.1|549281_550157_-|membrane-protein
MNQGLLYLAASVACSVTVAVLLKLARRHAIDVRQAIAVNYAVAAALCWLLLRPDAQALRQAMQGAPVLAALAVLLPTVFVAMARSVRHAGIVKSDAAQRLSLFIPLLAAFALFGESLTARKLAAIALAFAALACLLRRRAPAGAAADDAPDDRRAAWMWPLAVWAGYGVIDILFKQLARSGTAFSAGLLATFVAAGLLTLAYLCIRRTRWQARHALAGVALGLANFGNILTYVRAHQSLPDHPALVFGAMNMGVITAGTLVGALAFRERLSALNLAGLALALAAIAAMLPW
>LR134480.1|VEI24504.1|547765_549166_+|membrane-transport-protein
MLTTISSFSSLYFATLLMLIGTGLFNTYMGLRLTAQSVNEIWIGALIAGYYLGLVCGARLGHRLIIRVGHIRAFVACAAVATSMILAQALVDHLPLWLLLRLISGIVMVTEFMVIESWLNEQTENHQRGRVFSVYMVVSGLGTVLGQLALTAYATLDDGPLTLVAMCLVLCLVPIAVTARSHPPTPLPAPLDLRFFASRVPLSLTVLFVAGNLSGAFYGLAAVYAAKHGLSTSQSAIFVAAAVTAGLLSQWPMGWLSDRINRAGLIRFNAAVLVLLPVLMWGWIVLPYWAMVALSCVFGVLQFTLYPLGAAFANDHVEPERRVGLSAILLMTYGVGACLGPLIAGVMMSLGGPGMYYVFISACAVILVWQVRPARVTGAHQVDEAPVHFVPMPDTLQSSPAAVALDPRVDPDVDITMEMADPGPDVVEPPAPAGPPAPGADSESTSAPQAGEQAAPDDAAARRTGT
>LR134480.1|VEI24501.1|547184_547688_+|AhpC/TSA-family-protein
MTIKVGDRVPDGTLTEFIETETAGCTLGPNAFQVADLVKGKKIALFAVPGAFTPTCSAKHLPGYVEQAAALRAKGIDEIWCVAVNDAFVMGAWGREQQAGGKVRMLADGSALWTTALGLELDLVQRGMGVRSQRYSALIDDGVVKQLNIEAPGKFEVSDAATMLAQA
>LR134480.1|VEI24499.1|546514_546946_-|lipoprotein
MTRHFLAALLLAAASGAACAQAGADPAGQAIFDQIVLTSGAANGAARTCGASAPDLAQHAETWRLNLRRYADEYHYAFDSFDERYARGQQEGAEMMADMRASGVDGCTGALASFQRERTMTYDEMKQAIAEATDGLPEDQPAD
>LR134480.1|VEI24497.1|545620_546505_+|hydrolase
MTDADPHFDSLLPPLTLTRRGFVVTSLAAGFSLAAGAAAAQSAIHTDAAGLTAGKVDIPTPDGKMPAYRAAPAGKKDLPTLLVVSEIFGVHEYIQDVCRRLARLGYQAVAPELFARYGDPTGYTDIGRLRAEVVDKAGDRQVLADLDAAAAWAAANGGNSSRLGILGFCWGGRIVWLYAAHNPGLKAGAAWYGQLGGQASELKPRSVLESIGDLKAPVLGAYGGKDAGIPLSDVDRMRLALAKGPRAARDSRIDVYPEAPHAFHADYRPSYRKAEAEQAWQRMLDWFGQHGLAA
>LR134480.1|VEI24495.1|542165_545603_+|Uncharacterized-protein-involved-in-outer-membrane-biogenesis
MPVRMPGVRLTRRTVKVLLATVLVVLLLAGLAAWQVPRIVRGALTQDVSAMLGRDVSVGKIRFNPFTLTLRAHDLALAQPEGAAPLLQVAELDVSASWMSLFWFAPVVDSLVVRQPRIALVREDVTRFNFSDIQQKVADMTAQSPPEPEPEAGPPRFSLNNMVLEGGEITLDDKVSGRQQRIDEIALGVPFISTFGYATDIDVQPRVHMRINGSPFDLTGVARPFDTVPSSTLDVSFAGLELEKWADAWPLPLPVRLERALLDSDLQVLFEQPKDAAPRIKVVGELGLRQLDVRESSGDVLAQWSALAVRRIAFEPMQRSLYVGEVELWSPQIQTRRYADQRLNWLDIAQKLQKLGAGDAPAKPAAVPAPAPAPAQASASATPAAAQAAAAPQASAAAAAPDAWHVVVDAINVRDAELHLRDAVTKLDYVMNGVGATVEGLELPQPPDRPIGLWLTMDSTIDGSWLRAKGPLTLEPLNLDVKVELDRLALARLAPAVRASAPILVEDGRLGAQARVRVAQRDGATQVVAEGAALRLSDLSLRDESVKPAVPVSVKQFEARFDRLAPDAQPSPFTLKADGVQGEGALAMQGSLTAQPLALKSSVDLARLDLAPFAPYIASSLNATVRAINLSARGDAEFAAAAGATPMKAAWRGALDVNDLDLADRVNRDDFMQWKRLGLAGMQVSVNGDAFAANLGDITLDDFYGRVLLNAEGRLNVMDLVAEPGQAGGSITQDTQTRARAAAPAKPGPMPDIAIGSVTLKGGKMTFTDRFVKPNYTAELSRIEGSVSAVSSRQPKPAKVNVAGRVYTSAPFSISGTVQPFAQFLSLDLKASAKGVDLPRFTTYSAKYVGYPIKRGKLSLDVQYQIKDRALQASNRVVLNQLTFGDKTDSPDAVKLPVLLAVALLKDSRGNIDINLPISGSLDDPQFSVGGIIVRVLVNLVVKAVTSPFTLLASAFGGGEELSYIEFDPGSAALTPEAESRIETLAKALNDRPGLKLDVAGRADPASDEEGLRQAWVERQIRLAKARDTAGRGKKPAPDGVEVAPAERAKYLEEVYDDTKIEGKPRNFIGMAKSIPAEQMEALLRGAAPLGADDLRKLADARAQAVYEKLQAEGPADRIFVVAPQLDADGIKDDGKPTRVDFSLK
>LR134480.1|VEI24516.1|553671_554565_-|carboxyvinyl-carboxyphosphonate-phosphorylmutase
MSSAAKKFRDLLNSAEFIVSPGVYDGYSLRLVQAAGFKTACTSGAALSNALLGIADIGVMGLMENVNHCRMLARSVDIPLTADADTGYGNPVNVFHTVQMFEEAGVAGVNLEDQVSPKRCGHMPGKDVIPLEEMVKKIEAACLARRDDNFVIIARTDALAVEGIEGAARRAQAYAAAGADVIFPDAVRTAEDIGRIVEAAGVPVSVNMGFGVRQRPTTPLIPLPELKRLGVKRISLPRMLPAAAIHGMRSALEEMKQVIATGTPAHRPDLLVGIEDIMELMGYEAMRALEKKLTTLD
>LR134480.1|VEI24518.1|554794_557449_+|aconitate-hydratase
MNASFLHLGTPIHYADVAAAAARSGVELASLPYVIRILLENLLRHRGRGRPVQEAEIEAVAHWQAHISEQISLHVERVILPDSSGLPVLQDLAALRDAVQAGGGDPARVDTRVPVDLIVDHSLQVDAWSTADAVRRNLDAEFARNEQRYRFLKWAQQAFDGLRVFAPGTGIIHQVNLEKLATVVSTSEHGGQQWACPDFVIGGDSHTPMVNGLGVLGWGVGGIDAESALLGRAYTFPIPEVVGVELKGAFRSPVTTTDAALLVTQRLRAEGVTGCMVEFFGEALPGLSVADRATIANMAPEYGATCGFFPVDAQTLDYLRLTGRTAEHIELVRAYCQANGLWRADPAASAVRYARVVRIDLAQAEPCMSGPRRPQDRLPIGQLAEDFRQRLPRPAAEGGFGLDAAALARAPGSAGLRHGSIVVAALTSCTNTSNPSVMLTAALVARAARQRGIAPPAWVKRSLAPGSRTVTDYLAATGLLQDLEALGFGVIGYGCTTCGGKSGPLAPEVAQDIADNQWVVCTVLSGNRNFEGRIHKLARANYIGSPPLVVAYALAGRIDIDFSREPIATDADGQPVWLHELWPGEAQLDEIMARALSPQGFRRVWGLEPEGASQWRALAEVSGQHWQWDDSNYLVEPPFFKAPAQQFGQRLAGARVLGLYGDSLTTDHISPSGEIPAEAPAGRYLLGLGVAQRDFNTYVARRSNFEVMTRATFGNIRIRNLLVPGTEGGYTRHFPSGEQLSIYDASRRYMAAGTPTIVLAGEEYGTGSSRDWAAKGTALLGVRAVLAKSYERIHRANLVGMGVIPFQFERGQGWRELGLDGSETFEFFDVLDGIRQGRPVRVAASRDDGMRVEFSVMPQALTESERELLLQGGIPASVLADYLQ
>LR134480.1|VEI24520.1|557473_558847_+|dihydroorotase-like-protein
MARPLDTLLANTLVFLEGQGLVPGSIGIADGRIAVIGSHGQDMPAARETIDCQGLWTLPGVIDPHVHFGFGSPETDFETESRNAALGGTTSVISFHRSADIRESFDAVRARAESQSCIDFGFHFGITSRLHVDTLDEISRRFGVSSYKLYMMYKGAAGLSKGFTDIDDGLLWGALNATRAIPGAVLGVHCENVEVIPWLRDPLRAAGRDDLAAWNEQSPDFLEAENVHRVCYFAGKTGTPVNIVHLSSREALREVRRHRHEGRAAPIYVETCPHYLFLDDRSPAGTYAKVNPPVRSAADIDAMWEGVCDGAITTIGSDHVPRKRATKDKDIWAASNGFPGTGMILPILLHEGYHRRQVPLETLMRVASGASARIYGMPAKGRIAVGNDADLVIVDPDLEKTVDPGELESHADYSPYEGMRLKGWPVRTLVRGRTVARDGRIADEARQTPGGRYLRRL
>LR134480.1|VEI24522.1|558880_559600_+|hydrolase
MSETKRIWDAFLTERDKEVYKAAGYGKRGGFGKRPALFIIDVQYNFCGDKPEDILEGLKQYRTHCGAEAWDAVKHIVPLLELAREKNLPVFYTESGRRNDLLDSGVQVGKNHRGGEKTVLANTHATRTVEELAPLPQDIRIVKQKPSCFFGTIFMSHLNFFDVDTLILVGCTTSGCLRATTVDAYSYNFKVIIPEEASFDRFQSSHAMSLFDLNCKYADVIPTVEVADYLKALPAREAG
>LR134480.1|VEI24524.1|559610_560612_+|Uncharacterized-GTP-binding-protein-YjiA
MSTIPITLLTGFLGSGKTSLLRRLIHQPGFARCAVIINEFGEVGLDQALVADQSDDRDIQLLDSGCLCCLASSAIQDTLASLYYRRLRGEIPWFDRVLIETSGLAEPGPIINAVYGDGALARQFRFAGIVTTFDAGFGQVDVQAYAEAKTQLLMADTVVLTKLDLHPEARHLAAWLGELNPTARVYENSLPDDTLARLLLDPAADRPAPAAQGHPSAGAPQASALRHLLAYGIHSVTVDVPDAIGWPAWAAFVHEVQRTFADRLLRLKGVLAFEGQGRMAVHAVHHVFSAPEPAGAVPPALVGKLVFIVRDMEREEVLHAVRHLSGAPPADAA
>LR134480.1|VEI24526.1|560749_561769_+|putattive-exported-protein
MNFFNFGFQPGAAHTRRRVTATVLALAAWAALPAQQAAAQPQWPQRPVTLIVPFAPGGPTDITARVLGEALGKEWKQTVVIENRAGAGGTVGAGFAAKAAPDGYTLLLGVTGSHGIAGSLYPSLTYDPKGDFEAISKVVFYPNAIIANPDVPANNLQELIALAKKDPKYQVYGTDGNGTASHLTMELLRERGGFPMQAVQYKGASPLINDIVAGFVPVGITGFPSAEPQVKAGKLKLIALTTDKDYSGNGYPTIAGQGFPGFAAAPWSGIFAPKGTPAPVVQKIAADIKTVMASPAVVEKMQKLGLTPSAVTLADFEAELDRERASWATAVKISGAKVQ
>LR134480.1|VEI24528.1|561787_563173_+|fumarate-reductase-flavoprotein-subunit
MEFDMEFDVVIVGAGGCGLTAAVAIHDAYPQASIAVLDKAERACGNTVLSSGSIPAAGTRFQEAAGVHDTPRMFQEDLLTIAGEHEAMDLTWALTETSARLVEWLVDSAHVRLTLVETYKHIGHRVHRLHSPPSRRGADLVDDLLRECERRDIPVAWSNAVTGLIASEGRPRGVECATPDGAVTRVGARHVVLASNGYAANKSLLARFVPEVAAAPYGGGTGSEGEAILWGESLGAGLANMKAYQGHASLADPHGSLVTWTVIEKGGIIVDRSGRRFGDESIGYSAFAALELARTGPFWVIADTQVRDVTAAGQEEYAELVAHGGVLEGCLEELCARTGIDAAGLAATLQAARQCAADGGADAHGRAQWGLGPLGERLTATRIGPAIFHTQGGLRVDIDGRVLTDQAGVIDGLWAGGGAACGISGNRGSLGYMSGNGLLSALGLGLRIGQAIASRLGEEQA
>LR134480.1|VEI24530.1|563169_564546_+|catabolic-enzyme
MTHDFKGSLMAGATPTRALADWCAALRDSRPSEAVLRESARHVLDTLAACAAGMRQPLVRAAIELERGINAQPGPVALFGGPERWTVLESAGLMAVACHALEMDDGNREGSIHPATTVVPAVLALGWQQEADYLAFLCAVVAGFEVAVSIAETLHPHASQRGFQTTPVAGVLGAAAACATLLGLDGAGIESAMGLAASASGGLFAYLAGGGNVKKFHPGHAAREGLRAALMARQGVAQGPRGVIEGRAGLLQAFGGITQWDGSRARERAAPAIARSYLKPYPCCRHIHPAIDAVMALKARAAWQAADVAAIEVETYGAAMPHARLPWDTLEVAQLSFPWVMALACVDGEVTLAGFSEAARTRPDINALAARVSVAQTQECDSLYPASGPARVTLRLRSGESLSEWVADPLGSADRPLADEALDRKAAEAFGLAFPAARVRALIGQLRRLEPWPLAELN
>LR134480.1|VEI24532.1|564614_565610_+|putattive-exported-protein
MSRKFLSALRNAGMCGAMMLGGLSAAPAAVADAWPGQPIRMVVPFAPGGAVDTLGRLVAKQLTDVLGQTVVVENKPGAGGNIGSNIVAKAAPDGYTLLFGAAGNITINPSLFDNMPYDVEKDLAPAALAGQSMNVLVVPAALPVDSVAELIDYARKHPDKLNYGSSGNGGTTHLAGELFNAMAGTRITHVPYQGSGPAMIDLLAGRVQLMFDNLPSAMPHIQRGDLKALGVTGAMRSPQLPDVPTIAETGLAGFEATTWFGVFAPAGTPQAVLERLNGAVNQVMQSAPVEQKLQSMAAYFQPTTRAQFQTLIHDDTAKWARVIKAAGIKLN
>LR134480.1|VEI24534.1|565640_567026_-|catabolic-enzyme
MNPALPATPSDRFAAGLAEVCQFVSTLSWDAIPDAVRQRAVDVLCDDLAAMAAAAPEPELRRYAALLTARAGTAESPLLSPALPRVGRMEAASWNALAGNWCELDEGFRLAICHAGIYTLPALLAEATATRARLRDVLTALTGAYELVTRCAMSFHVMPPPVHGHALWSAVGAAAAVSLLRGHDAQTLLRAVSGAITTASMGPRSHLMAGVLIRNGWAAAGAVNGMQCADWAECGFGGAPASMEEVCAGIVKASLREGEITRELGTRWSLSHGYQKLYSCCQHGHSAVQACLALRADPGFEPQRIRAIRLDTHALALTLDTVHPTTTLGARFSMPHMVAAALALGTGSAAAFSQSTLSDPAVAALREKVRMRLADAPMPAPHDRPAWLEVELDDGQVLRASCLSATGSPDNPVTPAQFEDKLARLGADVLPRLPQAIAPAAWQAALDEETGAWLAALARQA

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Crispr_ID: LR134480_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134480_3

672115-672201

Orphan

Consensus_repeat	Method
AGTGTGCCTGTCCCCGCAGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134480_3

>merge|LR134480|3|672115-672201|CRISPRCasFinder
AGTGTGCCTGTCCCCGCAGGGACAGATACCGTCTTGGCGGGCTAGCGTCGATGGCGTACGGCAGTGTGCCTGTCCCCGCGGGGACAG

>LR134480|3|3|672115-672201|CRISPRCasFinder
AGTGTGCCTGTCCCCGCAGGGACAG	ATACCGTCTTGGCGGGCTAGCGTCGATGGCGTACGGC
AGTGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134480.1\|VEI24711.1\|662858_663899_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270367
LR134480.1\|VEI24709.1\|661502_662753_+\|facyl-CoA-transferase/carnitine-dehydratase	unknown	unknown	gnl\|CDD\|367110
LR134480.1\|VEI24727.1\|672887_673787_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
LR134480.1\|VEI24741.1\|682181_682658_+\|transcription-elongation-factor	unknown	unknown	gnl\|CDD\|234693
LR134480.1\|VEI24731.1\|674916_676626_-\|permease-of-ABC-transporter	unknown	unknown	gnl\|CDD\|224099
LR134480.1\|VEI24707.1\|660819_661428_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
LR134480.1\|VEI24713.1\|663891_664701_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
LR134480.1\|VEI24715.1\|664704_665499_+\|transmembrane-permease-ABC-transporter-protein	unknown	unknown	gnl\|CDD\|223673
LR134480.1\|VEI24737.1\|678576_679890_+\|xanthine/uracil-family-permease	unknown	unknown	gnl\|CDD\|132655
LR134480.1\|VEI24719.1\|666840_667884_+\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
LR134480.1\|VEI24721.1\|667894_671137_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
LR134480.1\|VEI24733.1\|676702_678025_-\|regulatory-lipoprotein	unknown	unknown	gnl\|CDD\|270236
LR134480.1\|VEI24725.1\|672232_672877_-\|phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|366010
LR134480.1\|VEI24717.1\|665540_666503_-\|transaldolase-B	unknown	unknown	gnl\|CDD\|235381
LR134480.1\|VEI24735.1\|678125_678443_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134480.1\|VEI24723.1\|671287_672052_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|235910
LR134480.1\|VEI24739.1\|679920_681552_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
LR134480.1\|VEI24705.1\|660443_660770_+\|DNA-binding-protein,-YbaB/EbfC-family	unknown	unknown	gnl\|CDD\|234669
LR134480.1\|VEI24743.1\|683012_683615_-\|RNA-binding-protein-YhbY	unknown	unknown	gnl\|CDD\|198171
LR134480.1\|VEI24729.1\|673834_674920_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361

Protein	Function_ID	Function_description	E-value
LR134480.1\|VEI24711.1\|662858_663899_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270367	cd13649, PBP2_Cae31940, Substrate binding domain of an uncharacterized protein similar to ABC-type transporter for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the periplamic-binding protein Cae31940 which is phylogenetically similar to the ThiY/THI5 family. ThiY is the periplasmic N-formyl-4-amino-5-(aminomethyl)-2-methylpyrimidine (FAMP) binding component of the ABC transport system (ThiXYZ). FAMP is imported into cell by the transporter, where it is then incorporated into the thiamin biosynthetic pathway. The closest structural homologs of ThiY are THI5, which is responsible for the synthesis of 4-amino-5-(hydroxymethyl)-2-methylpyrimidine phosphate (HMP-P) in the thiamin biosynthetic pathway of eukaryotes, and periplasmic binding proteins involved in alkanesulfonate/nitrate and bicarbonate transport. After binding the ligand, They interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ThiY/THI5 proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.02712e-131
LR134480.1\|VEI24709.1\|661502_662753_+\|facyl-CoA-transferase/carnitine-dehydratase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	6.00173e-142
LR134480.1\|VEI24727.1\|672887_673787_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.08863e-33
LR134480.1\|VEI24741.1\|682181_682658_+\|transcription-elongation-factor	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	7.10406e-83
LR134480.1\|VEI24731.1\|674916_676626_-\|permease-of-ABC-transporter	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.44555e-89
LR134480.1\|VEI24707.1\|660819_661428_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	7.18255e-106
LR134480.1\|VEI24713.1\|663891_664701_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	5.87905e-116
LR134480.1\|VEI24715.1\|664704_665499_+\|transmembrane-permease-ABC-transporter-protein	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	8.9481e-72
LR134480.1\|VEI24737.1\|678576_679890_+\|xanthine/uracil-family-permease	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
LR134480.1\|VEI24719.1\|666840_667884_+\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
LR134480.1\|VEI24721.1\|667894_671137_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
LR134480.1\|VEI24733.1\|676702_678025_-\|regulatory-lipoprotein	gnl\|CDD\|270236	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. On the other hand, thiamin is an essential cofactor in all living systems. Thiamin diphosphate (ThDP)-dependent enzymes play an important role in carbohydrate and branched-chain amino acid metabolism. Most prokaryotes, plants, and fungi can synthesize thiamin, but it is not synthesized in vertebrates. These periplasmic domains have high affinities for their respective substrates and serve as the primary receptor for transport. After binding iron and thiamine with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.02894e-39
LR134480.1\|VEI24725.1\|672232_672877_-\|phosphoglycerate-mutase	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.32049e-70
LR134480.1\|VEI24717.1\|665540_666503_-\|transaldolase-B	gnl\|CDD\|235381	PRK05269, PRK05269, transaldolase B; Provisional.	0
LR134480.1\|VEI24723.1\|671287_672052_+\|short-chain-dehydrogenase	gnl\|CDD\|235910	PRK07024, PRK07024, SDR family oxidoreductase.	4.78988e-141
LR134480.1\|VEI24739.1\|679920_681552_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	5.36555e-118
LR134480.1\|VEI24705.1\|660443_660770_+\|DNA-binding-protein,-YbaB/EbfC-family	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	6.20353e-44
LR134480.1\|VEI24743.1\|683012_683615_-\|RNA-binding-protein-YhbY	gnl\|CDD\|198171	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome.	3.18912e-30
LR134480.1\|VEI24729.1\|673834_674920_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.76041e-148

>LR134480.1|VEI24723.1|671287_672052_+|short-chain-dehydrogenase
MQHVFITGASSGLGQALARRYAADGARLGLLGRRAQALEALASSLPGQHRCYAVDVRDRAALHAAAQDFIAHCGGRVDVVIASAGVSAGTLTEAGEDYAVFKEIVDTNLLATVATFEPFIAGMRAARAGRLVGIASVAGVRGLPGAGAYSASKAAVATYCESLRLELAQAGVRVVTIAPGYVKTAMTAHNPYAMPFLMEADAFAGRAHAAIARGVSYRVIPWQMGVVAKLMRLLPDAVYDRLARDAPRKPRRGQ
>LR134480.1|VEI24721.1|667894_671137_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDLKSILIIGAGPIIIGQACEFDYSGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLPTMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGVAHSMDEAWEVQRRIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPTKELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMNPRVSRSSALASKATGFPIAKVAARLAVGYTLDELRNEITGGATPASFEPTIDYVVTKVPRFAFEKFPQADARLTTQMKSVGEVMAMGRTFQESFQKALRGLEVGVDGLNQKTTDREKLQIELGEPGPERIWYVGDAFAQGFTLDEVHGLTRIDPWFLAQIKEIVDIELALEQKTLADLDYATLWELKRRGFSDRRLAFLLDSSESEVRKLRHQLNVRPVYKRVDTCAAEFATNTAYMYSTYEEECESQPTDRKKIIVLGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEAEALAHASEIGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAGVHSGDSACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAIQGGDVYVLEVNPRASRTVPYVSKATGLQLAKIAARAMAGRTLADQGITREVVPPYFSVKEAVFPFVKFPGVDTILGPEMKSTGEVMGVGNSFGEAFVKSQLAAGVRLPDSGTVFISVRNQDKPRAVEVARGLHNLGFKLVATRGTAAEIEAAGIPVQVVNKVTEGRPHIVDMVKNGEVSLVINTVEERRNAIADSRTIRTQALANRITFFTTIAGARAAVEGMQFMRQGLGLQVYPLQELHAGLTAQ
>LR134480.1|VEI24719.1|666840_667884_+|carbamoyl-phosphate-synthase-small-subunit
MAEVVFNTSMTGYQEILTDPSYAGQTVMLTYPHIGNTGVNPEDVEANRVYAAGLVVRDCPARVSNFRATQSLPEYLNAQGIVAIAGIDTRKLTRILRESGAQGSCILVGEDAERAVELARGFPGMSGQDLAKVVSIKERADWTQGTWELGSGYTQPAQDRFHVVAYDYGVKSNILRLLADRGCRVTLVPAQTTAEEAFKLQPDGVFLSNGPGDPEPCDYAVDATRAFLERKLPVFGICLGHQLMGLALGGKTVKMKTGHHGANHPVQDVQSGRVFITSQNHGFAVDAATLPANTRVTHISLFDGTLQGFELTDRPAFCFQGHPEASPGPHDIIVLFDKFISLMAGQK
>LR134480.1|VEI24717.1|665540_666503_-|transaldolase-B
MPSQLEALRRHTVVVADTGDFEAMRALRPTDATTNPSLILKAVQQEAYRPLLVQTARAHQGASPAEITDRLLVAFGRQILDIVPGRVSTEVDARLSFDTRATVERARGLIALYQAAGVPRERVLIKIASTWEGIQAARVLQAEGIRCNLTLLFCLPQAAACADAGVQLISPFVGRIYDWHKKNAGAEWVEDARRGANDPGVQSVSRIYRYYKRFGIETEIMGASFRNVDQILALAGCDLLTISPELLTRLSQTEGEVPAALSPQAGHDDADAVRLDGGEVAFRTQLNEDAMASEKLSEGIRLFVADARKLDALIESHGAA
>LR134480.1|VEI24715.1|664704_665499_+|transmembrane-permease-ABC-transporter-protein
MSKLIKPGSLSLRFWQLLLFVVILLVWHAASRDPKVAFFFGEPLKVWGRIWAWFVSNGDIYGHLWVTLSETVLAFFIGTVSGLGFGLWLGLSPGASAILDPYIKAANSMPRVILAPIFGMWFGLGIWSKVALAVTLVFFIVFFNVYQGVREVSPTLLDNARMLGARRRQLLRHVYLPSATSWVFSSLHTSVGLAFVGAVVGEYLGSASGVGYLILQAEGTFDVNTVFAGIVVLTAFALLLDYVVGMGEKRLMKWQPKSGETEKL
>LR134480.1|VEI24713.1|663891_664701_+|ABC-transporter-ATP-binding-protein
MAEAALSLEGITCTFIAREDRSRRYTAVQDTSLAVAPGEFVSVVGPTGCGKSTLLNVGAGLLAPSSGTVRVFGQALAGINERAGYMFQGEALLPWRSALENVVAGLDFAGVPRAEADERGREWMRRVGLGGFETRYPHQMSGGMRKRVMLAQTLIRDPDIILMDEPFSALDIQTRQLMENEVLDLWMAKRKAVLFITHDLDEAIAMSDRVIVLSAGPGTHPIGEFAIDLPRPRDVAEVRTHPRFVELHAAIWGVLREEVLKGYAQQKRA
>LR134480.1|VEI24711.1|662858_663899_+|ABC-transporter-substrate-binding-protein
MSVTRRELLKLAGAAGAMSLAPAIVRAQKLEKAKVQIAVGGKPLIYYLPLTIAEVKGFFKDEGLDVSIADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADLKGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNTDPVVSMLETSGDIQIIVDTRTLKDTKEIFGGNMPAGCLYAPQAFVDANPNTAQALTNAIVRADKWIQKAGADEIAKAVPEGYLLGDPAVYKAAIGKSMEGLSPDGVIPEDGAATALKALAAFVPDFDAAKVDPAKAWTNEYTRRANEKYPNG
>LR134480.1|VEI24709.1|661502_662753_+|facyl-CoA-transferase/carnitine-dehydratase
MSALKGLKVLELGTLIAGPFAARMFGEFGAEVIKVETPHGPDGTGGGDPIRSWRHLHRGDSLWWTVQARNKQSIALNLKDPRAQEIARRLALEADVVVENYRPGVLEKWGLGYEQLRAINPATIMVRLSGYGQTGPLRDLPGFGAIGESMGGLRYVSGHPDRPPVRVGISIGDSLAALHGVIGALMALRHRDATGGRWNGATGEQCQAGQGQMVDVALYESVFNMMESLVPEYDVAGVVRERTGGALPGIVPSNTYTTRDGQNIVIAGNGDAIFHRLMLAIGRSDLAHDPQLERNDGRARRATEIDSAIQRWCDTHTIEQALATLRAADVPVGKIYSVADMFTDPQFLARGMIEQHHFPDGSPVKLPAVVPKLSETPGGTRWLGPRLGEHTEEVLRSLGYDAAAIAELAQTGAIGR
>LR134480.1|VEI24707.1|660819_661428_+|recombination-protein-RecR
MDPQLPEPEPLIALIEALRRLPGVGVRSARRMAYHLLQHDLQGADMLGRALSGAVQHLRHCARCNSFTEDEVCATCANPKRDPGLLCIVETPADQNMIESSHGYRGLYYVLMGRIAPLEGVGPRELDFQRVIERACDGVVQEVILATNFTAEGETTAHFLGDALSERGLKVTRLARGVPAGSELEYVDAGTIAWALMERRST
>LR134480.1|VEI24705.1|660443_660770_+|DNA-binding-protein,-YbaB/EbfC-family
MMKGQLAGLMRQAQQMQENMKKAQDALAEIQVEGAAGGGLVKVTMTCRHDVKRVAIDPSLLGEDKDMLEDLVAAAFNDALRKAEATSQEKMASVTAGMPLPPGMKLPF
>LR134480.1|VEI24725.1|672232_672877_-|phosphoglycerate-mutase
MTEIWFIRHGETDWNRQRRLQGWQDIPLNESGREQARLLAERLRDTASEHPFAALYSSDLKRAHDTAASLSAALQLRVRTEPGIRERGFGVLEGLEMENLEQQAPQAAQAWRSRDPLRALEGGETLGQFQARIIATVDDLAARHAGERILAVTHGGALDIIWRHASGVPLDAPRYAALLNVSINRVAIAQRKWEVLGWGDVEHIGAETGNDVTP
>LR134480.1|VEI24727.1|672887_673787_-|LysR-family-transcriptional-regulator
MEIYQIRAFVTVARLGNLTKAAEALSLTQPAVTAQLKALEQSLGVALFDRAAGRLSLAKAGEALLPTAEALLVLGAQLKSEARQLQGQLQGVIDLGVPSEQPDFLRLGELAAALRQRLPLVELKTHVLPSTALLEQVGTARLAGALTIVAHPPRGVTWHALRSVRYRIALPASLADTLKRAGWRDIAQLPWLDGPSGSHLHLLLRDMFERHGLAPRVVMQNDDQSNLDALVRAGAGCALLREETALAGAAAGDFIVWGQARADATLGFIAPPEQAGEPMLVALISMIQKIWKPGAAVAT
>LR134480.1|VEI24729.1|673834_674920_-|ABC-transporter-ATP-binding-protein
MKKVSVECRNIRLSYGRNEVLKDISIHIEPGEFFALLGPSGSGKSTLLRLIAGFNRQSHGQLLVDGRDIGATPPWDRNIGMVFQNYALWPHMTVWDNVAFGLVERRLPRAEIRDKVAAALELVGLADFGRRRPNQLSGGQQQRVALARTIVIEPQVLLLDEPLSNLDKKLRVQMRQDLLSLQRRLGITTIFVTHDQEEAMTTADRMAVLDHGVVQQIGAPSTLFDYPVNRFVANFVGTMNVLEGEVRERSRGGVVLAVDGVGELHLPVNGDAPQAGRLAASFRPHTVLIEMADGTGDARYVWLPGVVESSEFLGEFTRYQVQVGEQRLTADQHHLAGLSPFPVGAPVAVGLEPTQIRLLAA
>LR134480.1|VEI24731.1|674916_676626_-|permease-of-ABC-transporter
MTSTGTFRLPAGPALAALLVLAFLALFLVFPVGTVFYTAFVNADGSFTLGHFGAFFNQPLMKEAFFNSLYVAGWSSLLASLIAVPLAYFTVRFEFRGALLIQTLGVLPLIMPPFVGAVAMQLIFGRSGSVNLLLDDWLGITLPFMDGLNGVIFVESLHYFPFILMNLVVALRNIDGSMEEAAFNLGSRGFRLFCRIIFPLALPGYLAGTSLVFVKVFDDLGTPLVLGTTNMLAPQAYLRITQVGLEDPLGYVISVIMIGFSILALWLSARVLKGKDYSTLQKGGNAIHKRRLRPVESVLAYAWIGAVLLLVLSPHLGVLLLSLASVWSYAPLPDGYTLAHYTAVFTESQGMIANTLLYCGLAAGVDVVLGTAIAYLMLRTRLPARQWLDFIASAALAIPGIVLAIGYLRTFRGVEIPGTGVLLTSSWVLIMIAYSVRRLPYALRSCVAALQQINVSLEEAAESLGASRLRTIRRIVVPLMAGGMLAGFVTSFITAAVELSATIMLVTRDSQAPMSYGIYLYMQSAAGRGPGAALGVLAVVAVGIGTYVSHLLVERASARQRPARSGESS
>LR134480.1|VEI24733.1|676702_678025_-|regulatory-lipoprotein
MQALRPVLAAAIMAACAPALAGTVTVITSFPKDLTQAYKAAFEKAHPDIKLEILNKNTVSGIAFVRETPAGQRPEVFWASAPDAFEVLGRDKLLAKAPDVANPAVPDKIGSYPINDPSGMYMGQALAGYGIIYNTRYIKANKLPAPVEWKDLLAPHWFGHVGITAPSRSGTMHLTVETILQGEGWNDGWGTLLRMSGNASAVTERSFGVPDGVNNGQFGAGPVIDFFGLSSKYSKFPVDFVYPSETAIVPANIALIEGAKNTEEGKKFIAFTLSQAGQELLLEPKISRLPVLPYAALAGKIPPGYPDPAEIAKRSKVHFDADLSQARYYVVQSLFDQTITFRLKELQAATKAIYDAEAKLGERAGQGKAAELLAQARQLAWTPLVDAQRAADPAFLKLFAGNKKDAAVNQQITQLEGEWNGKARANYEQAQKLAREAAAL
>LR134480.1|VEI24735.1|678125_678443_-|Uncharacterised-protein
MTVSSVSSRISAGAFDQYARQLRDRAAASGAKDEAGSPAAEALQALQRQLAAIMRQMRQVRESNATAEQQARQLQDLNRQAFAIQGQIQKLLEEQLRLAQRLAAR
>LR134480.1|VEI24737.1|678576_679890_+|xanthine/uracil-family-permease
MSNTYFPRWRLADDTVSGAVIAPDERLSWPKNIAMGAQHVVAMFGSTVLAPLLMGFDPNVAILMSGIGTLIFFLFVGGRVPSYLGSSFAFIGGVVAVTGYVAPGANANIGVALGAIIACGLVYALIGLVVWAASARGNGARWIEAMMPPVVTGAVVAVIGLNLAPIAAKGAMGSSGFEASMALMTILCVGGIAVYTRGMVQRLLILVGLVLACVIYAVCANGLGLGAPMDFAKVAAAPWFGLPSFAAPVFEPQAMGLIVPVAIILVAENLGHVKAVAAMTGQDLDRYVGRAFVGDGVATMVSGAVGGTGVTTYAENIGVMAVTRIYSTLVFVVAAVIALVLGFSPKFGALIQTIPGPVLGGMSVVVFGLIAIAGARIWVVNQVDFSDNRNLIVAAVTLVLGAGDFSVKLGDFSMNGIGTATFGAIILYALLGLARRR
>LR134480.1|VEI24739.1|679920_681552_-|methyl-accepting-chemotaxis-protein
MLERIKVRTAMVAVFACFLAVLMLSGALTWRNAGRSAAEIEGLNQVAVNQVDPLFEASGAALRARVALLEALANLQANHLDPVATLHQQAGAAQRQAATQFQRYVDVPKEPAAAELAATLQTRWRAYQSVLDELAAAVDAGQAEPALAAMNRAQQAEHAFQRDMEAFLARVQAHSDEVRSGAEDTHVVARWSAIALAALGVLLTLAGWLFVRRAVLRPLLEAGHHFDRIADGDLTARIEVRSANEIGALFAALKRMQEGLTRTIAVMRRGVDEINVGAAEISAGNANLSSRTEEQAAALEETAATMEELATTVKQNADNAAQANQLAAVSMQVAQRGGESVAQVVQTMHGISASSRQIADIVTVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRAAQAAKEIKALIESSVATVRAGSQQVASAGGTMDEVVASVQRVADIMGEISAASAQQASGIDQVSLAISQMDETTQQNAALVEQAAAAATAMEEQARHLAAAAAVFRTQGGAIIDVAAAPLAGPAGGHAALPPAAAR
>LR134480.1|VEI24741.1|682181_682658_+|transcription-elongation-factor
MSAIPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSENAEYDAARERQGFIEGRISELEGTLSNAHLIDPTALDAEGRAVFGATVEIEDLDSGDRLTYQIVGDVEADIKSNLISVSSPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL
>LR134480.1|VEI24743.1|683012_683615_-|RNA-binding-protein-YhbY
MPILELTSRERSDLRSAAHPLRPVVLIGDNGLTDAVLKEIDLALTAHELIKVRAGGEDREAREAMLATICDTLSCAAVHHLGKTLILFRPDLRAAAAKAAADTPAKRRPSEPHTPKKMAAEGKRLTKTRPARKAAEAAAPAAGARPGRDDLNQAGRPARPSTRKASPGHAIPRRSGSALSLRAGARGGLAGRKPARANKR

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Crispr_ID: LR134480_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134480_4

1150691-1150820

Orphan

Consensus_repeat	Method
TTTGCCGCCGGGCCGCCCCAAGGCAAAAAAGCCCCCTCGGGGGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134480_4

>merge|LR134480|4|1150691-1150820|CRISPRCasFinder
TTTGCCGCCGGGCCGCCCCAAGGCAAAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCACAGCGGGCGCAGCGTGGGGGCGCGACCTTTGCCGCCGGGCCGCCCCAAGGCAAAAAAGCCCCCTCGGGGGGCA

>LR134480|4|4|1150691-1150820|CRISPRCasFinder
TTTGCCGCCGGGCCGCCCCAAGGCAAAAAAGCCCCCTCGGGGGGCA	GCAAGCCCGCACAGCGGGCGCAGCGTGGGGGCGCGACC
TTTGCCGCCGGGCCGCCCCAAGGCAAAAAAGCCCCCTCGGGGGGCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134480.1\|VEI25382.1\|1148139_1148961_-\|7-cyano-7-deazaguanine-reductase	unknown	unknown	gnl\|CDD\|236986
LR134480.1\|VEI25383.1\|1149279_1150602_+\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
LR134480.1\|VEI25389.1\|1154897_1156091_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|273303
LR134480.1\|VEI25384.1\|1151010_1151721_+\|membrane-protein	unknown	unknown	unknown
LR134480.1\|VEI25380.1\|1146143_1146716_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
LR134480.1\|VEI25388.1\|1154247_1154901_-\|biotin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|273783
LR134480.1\|VEI25379.1\|1144274_1146104_+\|excinuclease-ABC-subunit-C	unknown	unknown	gnl\|CDD\|234792
LR134480.1\|VEI25385.1\|1151731_1152475_-\|Inner-membrane-protein-yohK	unknown	unknown	gnl\|CDD\|377236
LR134480.1\|VEI25375.1\|1140423_1141923_+\|efflux-system-outer-membrane-component	unknown	unknown	gnl\|CDD\|182103
LR134480.1\|VEI25374.1\|1137196_1140427_+\|efflux-system-transmembrane-protein	unknown	unknown	gnl\|CDD\|273335
LR134480.1\|VEI25392.1\|1158504_1158648_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|377073
LR134480.1\|VEI25378.1\|1143250_1144312_+\|beta-hexosaminidase	unknown	unknown	gnl\|CDD\|235417
LR134480.1\|VEI25387.1\|1152814_1154251_-\|biotin-synthesis-protein	unknown	unknown	gnl\|CDD\|379223
LR134480.1\|VEI25391.1\|1157533_1158508_+\|Probable-copper-importing-P-type-ATPase-A	unknown	unknown	gnl\|CDD\|319774
LR134480.1\|VEI25390.1\|1156194_1157469_+\|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	unknown	unknown	gnl\|CDD\|235656
LR134480.1\|VEI25393.1\|1158772_1160260_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|237726
LR134480.1\|VEI25376.1\|1141919_1142666_+\|pyridoxal-phosphate-biosynthetic-protein	unknown	unknown	gnl\|CDD\|235380
LR134480.1\|VEI25386.1\|1152467_1152827_-\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|377131
LR134480.1\|VEI25381.1\|1146885_1148133_+\|transmembrane-transport-protein	unknown	unknown	gnl\|CDD\|340883
LR134480.1\|VEI25377.1\|1142750_1143212_+\|holo-(acyl-carrier-protein)-synthase	unknown	unknown	gnl\|CDD\|234610

Protein	Function_ID	Function_description	E-value
LR134480.1\|VEI25382.1\|1148139_1148961_-\|7-cyano-7-deazaguanine-reductase	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	0
LR134480.1\|VEI25383.1\|1149279_1150602_+\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
LR134480.1\|VEI25389.1\|1154897_1156091_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|273303	TIGR00858, Putative_8-amino-7-oxononanoate_synthase, 8-amino-7-oxononanoate synthase. 7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	1.2202e-142
LR134480.1\|VEI25392.1\|1158504_1158648_+\|outer-membrane-protein	gnl\|CDD\|377073	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type.	1.64467e-12
LR134480.1\|VEI25380.1\|1146143_1146716_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	3.46977e-48
LR134480.1\|VEI25388.1\|1154247_1154901_-\|biotin-biosynthesis-protein	gnl\|CDD\|273783	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam00561). Members of this family are restricted to the Proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	4.76982e-07
LR134480.1\|VEI25379.1\|1144274_1146104_+\|excinuclease-ABC-subunit-C	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
LR134480.1\|VEI25387.1\|1152814_1154251_-\|biotin-synthesis-protein	gnl\|CDD\|379223	pfam13500, AAA_26, AAA domain. This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif.	3.91071e-66
LR134480.1\|VEI25385.1\|1151731_1152475_-\|Inner-membrane-protein-yohK	gnl\|CDD\|377236	pfam04172, LrgB, LrgB-like family. The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance.	1.36587e-69
LR134480.1\|VEI25374.1\|1137196_1140427_+\|efflux-system-transmembrane-protein	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
LR134480.1\|VEI25378.1\|1143250_1144312_+\|beta-hexosaminidase	gnl\|CDD\|235417	PRK05337, PRK05337, beta-hexosaminidase; Provisional.	0
LR134480.1\|VEI25391.1\|1157533_1158508_+\|Probable-copper-importing-P-type-ATPase-A	gnl\|CDD\|319774	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase. Heavy metal-transporting ATPases (Type IB ATPases) transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. These ATPases include mammalian copper-transporting ATPases, ATP7A and ATP7B, Bacillus subtilis CadA which transports cadmium, zinc and cobalt out of the cell, Bacillus subtilis ZosA/PfeT which transports copper, and perhaps also zinc and ferrous iron, Archaeoglobus fulgidus CopA and CopB, Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase, and Escherichia coli ZntA which is selective for Pb(2+), Zn(2+), and Cd(2+). The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This family belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	2.80645e-20
LR134480.1\|VEI25390.1\|1156194_1157469_+\|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	gnl\|CDD\|235656	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional.	0
LR134480.1\|VEI25386.1\|1152467_1152827_-\|integral-membrane-protein	gnl\|CDD\|377131	pfam03788, LrgA, LrgA family. This family is uncharacterized. It contains the protein LrgA that has been hypothesized to export murein hydrolases.	2.10855e-25
LR134480.1\|VEI25376.1\|1141919_1142666_+\|pyridoxal-phosphate-biosynthetic-protein	gnl\|CDD\|235380	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.	5.79242e-145
LR134480.1\|VEI25375.1\|1140423_1141923_+\|efflux-system-outer-membrane-component	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	4.24204e-112
LR134480.1\|VEI25393.1\|1158772_1160260_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	gnl\|CDD\|237726	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional.	0
LR134480.1\|VEI25381.1\|1146885_1148133_+\|transmembrane-transport-protein	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.77782e-25
LR134480.1\|VEI25377.1\|1142750_1143212_+\|holo-(acyl-carrier-protein)-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	1.59551e-52

>LR134480.1|VEI25383.1|1149279_1150602_+|isocitrate-lyase
MSNRETEIRNLQKDWAENTRWQGIKRAYSAEDVIRLRGSVAVEHSLARRGATRLWDSLHSEPFVNSLGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPQVVRRINNALARCDQIQWMEGKNPGGQDYIDYYAPIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVSKLVSARLAADVMGTPTILLARTDADAADLVTSDVDENDRPFITGERTVEGFFRTRAGLDQAISRGLAYAPYADLIWCETSTPNLEYARKFAEAVHRQFPGKLLAYNCSPSFNWKKNLDDGTIAKFQRELGAMGYKFQFITLAGFHALNYGMFELAHGYARRQMSAFVELQQKEFAAAELGFTAVKHQREVGTGYFDAVTQTIEGGQSSTTALTGSTEEAQFEHGGQAVKAA
>LR134480.1|VEI25382.1|1148139_1148961_-|7-cyano-7-deazaguanine-reductase
MSLSNAPLGQHVAYPSQYDPGLLFPIPRATNRASLQLGATLPFTGVDLWNAYELSWLDARGKPRVAMATFSFPADSPNIVESKSFKLYLNSFNQTRLPNAQALRDRLERDLAAAAGAPVGLEFISPQRFGELNMAELDGIYIDKLDIEIDTYEPAPQLLQCAPGDEVEETLATRLLKSNCPVTGQPDWASLQVRYRGRPIDRAALLKYVVSFRQHAEFHEHCVERIFGDIMRACQPRQLTVYARYTRRGGLDINPWRSNFESAPPADVRTARQ
>LR134480.1|VEI25381.1|1146885_1148133_+|transmembrane-transport-protein
MNSETAVLDSPALRRRDWQIILLIGVAHSSSHFFQLVLPSLYVSLGTEFGLDFARLGLLVSVFYVVSGLGQASSGFVVDRIGARPVLWFGLACFVLSAVLIGAASGYAMLMLAAAIGGIGNSVFHPADYSIINHRVSPPRLGHAFSLHGLTGNLGWALTPVFITTITLLASWRVAAFSAAALVAVVLLMTVIGRDLLGGAAPAEAGGKSAARPAAQESVWQTLAALLARPALWGAFLFFACTSIALSSVQNYTIPLLGQLYDLSKVAASSALSGYMVASALGMAAGGFLVSANPRTELTVTAALIMAGLTLVVLAMGWVPAGWAALVVGLAGFCSGVAAPSRDMLIRRVTPKGATGSVYGLVYSGMDVGSALGPLGFGLLLDAGMAHGPWVGAGVAFAAAALLAQWIAMQARRTA
>LR134480.1|VEI25380.1|1146143_1146716_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MPINVPIFLTWLRIAMIPLVVGLFYLPESWMSVPMRDTFAAWAFIIAALTDWFDGWLARRWNQTSAFGAFLDPVADKLMVCAALIVLLDLSRVDAFISLIIIGREITISALREWMAKIGASASVAVHRLGKFKTAAQMVAIPCLLYDQPLFGLSSRLIGDVLIVVAAVLTVWSMLYYLQRAWPAIREKSQ
>LR134480.1|VEI25379.1|1144274_1146104_+|excinuclease-ABC-subunit-C
MPDDFNLKSFLADLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTRSEAEALLLENNLIKSLRPRYNILFRDDKSYPYLLITGHAWPRIAYYRGATSKRGQYFGPYPNSWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAGDYAHDVQRAVRFLNGEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDDTDVIAVASAGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPPVLVCSHALPDSGLVGLLAEQGGTRAARVLTRPQGVRRSWLEQAQKNAEMALARALTESGARAGRTLALAEALDLDTDEESLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYNIVGITPGDDYAAMRQVLTRRFGKVADGEAPMPGLVLIDGGKGQVEVARQVFVELGLDIQSLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRDEAHRFAITGMRARRAKTRNVSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEGISQELAVRIYDALHG
>LR134480.1|VEI25378.1|1143250_1144312_+|beta-hexosaminidase
MSSKKKTKPVLPPGPVMVDVAGTTLTKDEKRRLRNPLVGGVILFARNFTDRRQLCALTRAIHKARKEPLLIAVDHEGGRVQRFRDDGFTALPPMQELGKLWDRDPLAAMRLATEAGYVLAAELRACGVDLSFTPVLDLDYGVSKVIGNRAFHHDARVVTMLSRALAQGLALAGMAACGKHFPGHGFVGADSHHEIPVDPRPLARILKDDAAPYAWLGDLVMPAVMPAHVIYPKVDAQPAGFSRRWVSEILRERLGYDGVVFSDDLTMEGASVAGDILARAEAALGAGCDMVLVCNRPDLADELLDRLQVQHPAASVERIRRLMPRFAAPDWDTLQNDSRYQHARRLQSQIVSG
>LR134480.1|VEI25377.1|1142750_1143212_+|holo-(acyl-carrier-protein)-synthase
MSSVSAAGATPPASPGCIAGIGMDLLRIERIERALARHGDRFAQKILGPEELAKFHARRRRDPARGVRFLATRFAAKEAFSKAIGLGMRMPMSWRRVQTLNAPGGRPVLVIGAELADWFDARFGAAHVSITDESDMAAAYVIVERKPAPDGRP
>LR134480.1|VEI25376.1|1141919_1142666_+|pyridoxal-phosphate-biosynthetic-protein
MIELGVNIDHVATLRQQRHTAYPDPVQAALRAEDAGADLITLHLREDRRHIQDADVYAIRPLLRTRMNLECAVTPEMLEIACAVKPSDVCLVPEKRTELTTEGGLDVAGAQAAVTDAVQLLAEAGIRVSLFIDPDARQIEAAARAGAPVIELHTGAYAEARDDAAVQAELARVRAAVAEGLRHGLRVNAGHGLHYGNVQAVAALDGIAELNIGHAIVAQSIFDGWDKAVRDMKALMVQARLAAVRGHA
>LR134480.1|VEI25375.1|1140423_1141923_+|efflux-system-outer-membrane-component
MMAVMYKRSALSVLVAAALAGCSLAPDYKRPEAPVQANWPDQPKVQYGAYASPTSLGEQPAATVAPQGATPADEIGWREFFRDARLQKLIELALVNNRDLRVAVQRVEEARAQYGVQRGAQWPSIGAGIQGQRQHLPPDMRPLGPDSTSISSQYQAGLGLTTFEIDLFGRLRNLSEAAYQQYLSTEQAQRSVHITLVGAVAQSYFNLRAAEVQLELTQKTLASRQESYNLVKTRFDGGVASELDLNQSKSLLDSASADLAALARARAQAANALVVLVGLPGLPEDLPAPAVFGRDQLLASVPAGLPSDLLTRRPDILAAENQLKAANANIGAARAAFFPTISLTGLLGVASPSLDNLFKGGQGYWSFSPSITTPLFAGGSIREGLNLAKARDNIAVAQYEQSIQQAFREVSDALAGEATYSAQLDAQRALQVAAGRTLELSNLRYNNGIDSYLQVQTAQVDFFNAQLGLVQTGLAALINRVELYKALGGGWQESTTKQP
>LR134480.1|VEI25374.1|1137196_1140427_+|efflux-system-transmembrane-protein
MPQFFIDRPIFAWVVALFILLTGILAIPNMPVSQYPDVAPPAITITATYPGASAKEVAESVTSIIEDQLNGAKGLLYYESVSDSYGQSQITATFAPGTDPDLAQVDVQNRVSNVTAQLPVAVMQQGLQYEQTSAGFLMIVTLSSTDGTLDQTALADYITRNVKNPVSRVPGVGQFQLFAAPRAMRIWVDPDKLVGFNLSMAEVNQAISQQNVLISAGSIGAPPNPDSQRATATVIVNGQLSTIEGFGQIVLRANTDGSKVLLRDVARIEVGADNYQFGARLNGKPTAAFAIVLSPDANALATAEGVRQQMASLSQYFPSNIRYDIPYDTAPYVKVSIEQVIHTLVEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMLGAFAVMLALGFSINVLTMFAMVLAIGILVDDAIVVVENVERIMASEGLSPKEATKKAMPQISGAIVGITLVLVTVFLPLAFMTGSVGVIYRQFSVAMAVSIFFSAFLALSFTPALCATILKPIPKGHHQEKKGFFGWFNRKFDATTHNYQNWVSRILHKGGRMMLAFALLVVLLGWLYMRLPSSFLPEEDQGYVVSNIELPTGASANRTIEVIEEVENYFRNIPAVENVITVQGYSFNGNGLNAAIAFTTLKDFSERKSRADSAGAIAFTAFSKQLMGIHDAQVFTLVPPAISSLGNASGFDFRLQDRGGAGTEALGAATAELMGMAAKSPVLSQVRITGLGPGSQLSLTIDRDKAAALGVNFDEAATLISTAVGSAFLNKFPNMGRMQNIWVQADQQYRMQVEDLLKLNARNNQGGMVPLSTFVSAKWVQGPVQVVRYNSYESVRIGGDAAAGYTTGEAMQEMQDLVARLPQGFGYEWNGLSYQERLAGNQAPILMGLALLVVFLVLAALYESWAIPLSVMLVVPLGMLGAVALVTVLGMSNDVYFQVGMVTVIGLAAKNAILIVEFAKDQYARGQGLYESAVEAARLRFRPILMTSLAFILGVVPLAIATGAGAASQRAVGIGVLGGMLAATPFAVIFVPTFFVVVLGLFKTRPRLLGAELRAFEEEQAAKRAAEQQQPQDGAATPAPQTGGQENKE
>LR134480.1|VEI25384.1|1151010_1151721_+|membrane-protein
MALVLARFGFGFCMLLAALVLLAAATLLATRLVGWAVRAFALERSQALASGVAIFILVALALWGCHAVGEVLYGAIGATALVGGAPHWLAGNSHVSAAALMGATTAAAMLAGGPAFWRWLRARRAAAAEQPAPRKAAPPKGAKPAARAAKAAGKTQIAPRGQRIPWLGWTAFFLLFIGAAVLAFAYIVAPIEAGASGLRLEHATRARPVYLAGLTLLGGGAFFLLAWLSRRRPPGD
>LR134480.1|VEI25385.1|1151731_1152475_-|Inner-membrane-protein-yohK
MPDFVNLWIYLSSTPLFGLTATLTVYLSAHAMYLRLGQVPLANPVLWSMVVLAAGLLAFGVPYPTYFAGAQFIHFLLGPAVVALAWPLWMRRAELRRRWARLLWAALFGGAVACASAVLLGWAVGLPRDIILSLAPKSVTAPVAMGLSETLGGIPALSAVFAALTGLVGALTGKYLFDLLGPVRGRQDWADRGFALGTVSHGIGAARAIQVNADAGAYAGLALGLQVILASLLIPVAFRLAAGLGGS
>LR134480.1|VEI25386.1|1152467_1152827_-|integral-membrane-protein
MQALTGFTWLLALQALGEACSRLLHFPIPGPVTGMLLLLVALRWPLVREPVALAAQFLLSHLSLLFVPVGVGVMTHIALLAEYGLRMAAVIALSTLAGMAATYWALRVGRSAAPETDDA
>LR134480.1|VEI25387.1|1152814_1154251_-|biotin-synthesis-protein
MSTRSTPTIGQRFDRAAARYETHAEVQRHAAEQLAERIAALPLPAEPRILEIGCGTGLLTRALARRLGRADWTITDIAPAMLAAQQAGPPPAGRVRHQLVDGEHPAGLPGGYDLICSSLAVQWFGDLDAGLARLAGLLAPGGLLAIATLAEHTFSEWRAAHQAHGLHAATPAYPPAERIGRTLAGLRGGITREAYRQRHPDALHFVRSLKAIGASAPAAGHAPLSPAAFRRVLAQFDRQGNHVTYDLAYGLWRKQAPGVFVTGTDTGVGKTLASAILARAWRAHYWKPLQTGVAEEPGDTETVAALAGLEPARLHPPAHVLQAPLSPWAAAPLEGVTLDAAAIAPPQVDGPLVVEGAGGLYVPIDERHMMIDLIARLGMPVVLAARSGLGTINHTLLSLHALRERRLPVLGVIMLGEPSAGNRHAIEHFGGVPVLAQIPRLARVDAEAVEAWAARIPPLADCLARRWPDTQETPACRP
>LR134480.1|VEI25388.1|1154247_1154901_-|biotin-biosynthesis-protein
MSAPRPLLRFEHGWAHDAGVWAPLRAALADWPQQAADAGYFGPAVEPPPDGAPVVAIGHSLGFLKILQSPAPGCIAYIAINGFARFAGGADYPPGVAPRLLERMLARLELDPAAVVDDFRRRAGSAPHAGTPRPEPLRHDLRRLREADERQALAASRLPLLALAGTADPIVAPALTRAQFGACAGLRWRDGGGHLLPTSDPDWCAGRIRAFLAGLPA
>LR134480.1|VEI25389.1|1154897_1156091_-|8-amino-7-oxononanoate-synthase
MSKLDSLFTAALEQAAQRQVRRRLRRATAAPPGRLALDGRTLVNFSSNDYLGLARHPLLAERASLWATRHGAGAQASRLVCGNLDLHEQVEAKLARLKGTEAALLLASGWQANAAVLPALFKAAAAQGEPQVYTDRLNHASLHHGCQAAGVRQIRFRHNDLAHLEHLLAERAGAPGARFIVTESVFSMDGDRADVPALAALAARHHAFLYLDEAHATGVLGPRGMGLAGLAPGGVDLAMGTFSKGLGSFGAYVAGSRALCDYLVNACSGFIYTTALPPAVLGAIDAALDLVPRLDQARAALLGHGERLRASLAAQGIDCGASSTQIVPAIVGDAGHALALAAELERRGLLAVAIRPPTVPAGTSRLRIALSAAHGEAELDQLIEALAAGWRAVRQAA
>LR134480.1|VEI25390.1|1156194_1157469_+|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase
MSDTTPAWMAQGYPHIWLPYAQMKTAAPPLPVVRSHGSLLELADGRTLIDGVASWWTACHGYNHPHIAQAVREQLDRMPHVMFGGLAHEPALNLASRLSALLGPGLERVFYTDSGSVAVEVAMKMAVQFWLNQGERGRTRFVAFRGGYHGDTFGTMAVCDPDEGMHAMFRGLLPEHDVLALPRDEAALAALQAHLERHAGRIAGMLVEPLVQGAGGMLLHDPQVLARLRELADRYGILLIFDEIFTGFGRTGTMFAFEQAGVRPDIVTLSKALTGGTLPLAATVASARVFEGFWSDDPGHALMHGPTFMGCALACAAANASLDLFEREPRLRQVAALEQALRAGLEPCRDLPWVRDVRVLGAIGVIELDGIGARDDLRRRLVDAGVWVRPFGNIVYLTPAFTIAEDELHALLAAVRQVVAERRP
>LR134480.1|VEI25391.1|1157533_1158508_+|Probable-copper-importing-P-type-ATPase-A
MRPTSILAVPADLPGADRQARRHALVRLGVAWLAMMQVMMFAWPGYVRNDGIPADALATLDWAIVLMNWAALLMTVPVVLYCAWPIWRGAASGLRRGRAGMDAPVALGIVAAFVPSVHATWTGRGEVYFDSVTMFVAFLLTARYLELCARQACGASALATPLVRRLHQAGGELGAAADRLATRFVFVQVALALAAGAAWTQIDAAHAVPVMVALLVMSCPCAMSMAVPSAMACAHSALLARPEATAAQGDALLAAAARVARQNLYGSLAWHLLMTPLALAGWVAPWLAAITMLLSSLAVAGNAWRLRRHRWDAAPAAAVAQPAP
>LR134480.1|VEI25392.1|1158504_1158648_+|outer-membrane-protein
MSILYLLLPLSLAFVLAIGVALWWAVFSGQYDDTEDQGAAILRDNDN
>LR134480.1|VEI25393.1|1158772_1160260_+|cbb3-type-cytochrome-c-oxidase-subunit-I
MNDCSAIASKAETFNYKVVRQFAIMTVVWGIVGMAVGVLIAAQLIWPQLNFDTAWLSYGRLRPLHTNAVIFAFGGSALFATSYYVVQRTCQARLFCDKLAAFTFWGWQAVIVAAAITLPMGFTSSKEYAELEWPIDILITLVWVAYAVVFFGTIVKRRSRHIYVANWFFGSYILTIAILHIFNNIEMPVTLWKSYSAYAGVQDAMVQWWYGHNAVGFFLTTSFLGMMYYFVPKQAGRPIYSYRLSIVHFWALAFTYMWAGPHHLLYTSLPDWTQSLGMTFSLILLAPSWGGMINGIMTLQGAWHKLRTDPILKFLVTALSFYGMSTFEGSMMSIRTVNSLSHYTDWTIGHVHSGALGWVAMITFGSLYYLIPRLYGRQQMHSVRAMELHFWVATIGVVLYIAAMWIAGVQQGLMWRDTAADGTLVYSFVEELKTRVPYYVIRLAGGILYLSGVFVMAWNVWMTVRGARAVNPAIPLENDNRATAPAGVPAAVPAV

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Crispr_ID: LR134480_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134480_6

3555502-3555595

Orphan

Consensus_repeat	Method
GTGCCTGTCCCCGCCGGGACAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134480_6

>merge|LR134480|6|3555502-3555595|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCACCCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGCGTGCCTGTCCCCGCCGGGACAGGCAC

>LR134480|6|6|3555502-3555595|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCAC	CCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGC
GTGCCTGTCCCCGCCGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134480.1\|VEI27558.1\|3548522_3549494_-\|lipoprotein	unknown	unknown	gnl\|CDD\|270234
LR134480.1\|VEI27559.1\|3549560_3550346_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181723
LR134480.1\|VEI27561.1\|3551766_3552522_-\|membrane-protein	unknown	unknown	gnl\|CDD\|223930
LR134480.1\|VEI27560.1\|3550338_3551571_-\|dehydratase/racemase	unknown	unknown	gnl\|CDD\|367110
LR134480.1\|VEI27565.1\|3556240_3556585_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|225984
LR134480.1\|VEI27568.1\|3559184_3559844_+\|amino-acid-efflux-protein	unknown	unknown	gnl\|CDD\|224199
LR134480.1\|VEI27555.1\|3545181_3546210_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|366103
LR134480.1\|VEI27570.1\|3560862_3561318_-\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|226610
LR134480.1\|VEI27572.1\|3562250_3562646_+\|bactoprenol-linked-glucose-translocase	unknown	unknown	gnl\|CDD\|377229
LR134480.1\|VEI27571.1\|3561314_3562232_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|212118
LR134480.1\|VEI27566.1\|3556684_3558130_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
LR134480.1\|VEI27563.1\|3553147_3555271_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
LR134480.1\|VEI27564.1\|3555681_3556152_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
LR134480.1\|VEI27567.1\|3558213_3559188_+\|DMT-superfamily-permease	unknown	unknown	gnl\|CDD\|223769
LR134480.1\|VEI27573.1\|3562605_3564204_-\|4-amino-4-deoxy-l-arabinose-lipid-A-transferase	unknown	unknown	gnl\|CDD\|224720
LR134480.1\|VEI27562.1\|3552632_3553151_+\|Mg(2+)-transporter	unknown	unknown	gnl\|CDD\|224204
LR134480.1\|VEI27556.1\|3546236_3547409_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
LR134480.1\|VEI27554.1\|3543922_3545116_-\|thiolase	unknown	unknown	gnl\|CDD\|180775
LR134480.1\|VEI27557.1\|3547534_3548512_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
LR134480.1\|VEI27569.1\|3559933_3560857_+\|lipoprotein	unknown	unknown	gnl\|CDD\|378820

Protein	Function_ID	Function_description	E-value
LR134480.1\|VEI27558.1\|3548522_3549494_-\|lipoprotein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117
LR134480.1\|VEI27559.1\|3549560_3550346_-\|enoyl-CoA-hydratase	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	2.06175e-156
LR134480.1\|VEI27561.1\|3551766_3552522_-\|membrane-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
LR134480.1\|VEI27560.1\|3550338_3551571_-\|dehydratase/racemase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.36236e-118
LR134480.1\|VEI27565.1\|3556240_3556585_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
LR134480.1\|VEI27568.1\|3559184_3559844_+\|amino-acid-efflux-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	4.25651e-32
LR134480.1\|VEI27555.1\|3545181_3546210_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|366103	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain. C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.	1.19321e-12
LR134480.1\|VEI27570.1\|3560862_3561318_-\|Predicted-membrane-protein	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	2.35069e-54
LR134480.1\|VEI27572.1\|3562250_3562646_+\|bactoprenol-linked-glucose-translocase	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	8.84202e-15
LR134480.1\|VEI27571.1\|3561314_3562232_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|212118	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria. This subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.	1.57664e-91
LR134480.1\|VEI27566.1\|3556684_3558130_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.70342e-111
LR134480.1\|VEI27563.1\|3553147_3555271_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
LR134480.1\|VEI27564.1\|3555681_3556152_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
LR134480.1\|VEI27567.1\|3558213_3559188_+\|DMT-superfamily-permease	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.6581e-12
LR134480.1\|VEI27573.1\|3562605_3564204_-\|4-amino-4-deoxy-l-arabinose-lipid-A-transferase	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	3.37964e-50
LR134480.1\|VEI27562.1\|3552632_3553151_+\|Mg(2+)-transporter	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	7.28697e-45
LR134480.1\|VEI27556.1\|3546236_3547409_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	6.87275e-84
LR134480.1\|VEI27554.1\|3543922_3545116_-\|thiolase	gnl\|CDD\|180775	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase.	2.86943e-175
LR134480.1\|VEI27557.1\|3547534_3548512_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.33368e-60
LR134480.1\|VEI27569.1\|3559933_3560857_+\|lipoprotein	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	3.53768e-21

>LR134480.1|VEI27563.1|3553147_3555271_-|elongation-factor-G
MTRRTSIERYRNIGISAHIDAGKTTTTERILFYTGITHKLGEVHEGAATMDWMEQEQERGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWRQANKYGVPRIAFVNKMDRVGADFFRVQRQIVERLKGDAVPIQIPVGAEDHFEGVVDLVKMKAIIWDDASQGVRFEYRDIPPELQAQAEQWREKMIEKAAEANEALLEKYLSGQPLSEDEIKSGLRARTVANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPADVPAIIGHDERDREIERHPADDEPFSALAFKIMTDPFVGQLVFFRVYSGVVKSGDSVLNPLKSKKERLGRILQMHANERREISEVYAGDIAAAVGIKEITTGDTLTDPAHVIILERMTFPEPVISQAVEPRTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREFGVEANVGKPQVAYRETIRSTVTDVEGKFVKQSGGRGQYGHVVLKLEPQEQGKGYEFVDAIKGGVVPREFIPAVDRGVRETLNTGVLAGYPVVDVKVTLVFGSYHDVDSNENAFRMAASMAFKEGMRRAKPVLLEPMMHVEVETPEDFTGNVMGDLSSRRGMVQGMEDIAGGGGKLVRAEVPLAEMFGYSTSLRSLTQGRATYSMEFKHYAEAPRQVAEQIIAARGSGAAARG
>LR134480.1|VEI27562.1|3552632_3553151_+|Mg(2+)-transporter
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGAIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAVLRRLERRIAARDDKRVVAQPPP
>LR134480.1|VEI27561.1|3551766_3552522_-|membrane-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>LR134480.1|VEI27560.1|3550338_3551571_-|dehydratase/racemase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAARQLPEGTDHD
>LR134480.1|VEI27559.1|3549560_3550346_-|enoyl-CoA-hydratase
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSRQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>LR134480.1|VEI27558.1|3548522_3549494_-|lipoprotein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>LR134480.1|VEI27557.1|3547534_3548512_+|LysR-family-transcriptional-regulator
MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>LR134480.1|VEI27556.1|3546236_3547409_-|acyl-CoA-dehydrogenase
MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAAGAPVSAHWIADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRRDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>LR134480.1|VEI27555.1|3545181_3546210_-|acyl-CoA-dehydrogenase
MVSTMQQDLYETFARALAGLCPLERVRELEAAADPRAGAARAWNEVDALGYGDALSPAEHGGAGLSLADAEGLLRAAGAMALPFPFADTLLARALLRAAGQAVPDGPIALGVALPHGAGWRCAPIAGVALAQAVAVEHDGCLALWPAPDAVQPGLFRPRASGAPAWRGTPAQAGRAGAPAGAVQAWRNAADAAGMAGAMQAVLDRCVAYVQERQQFGRALGRFQAVQQDISMLAEQVAAVAMAARLACASGALFPDPALAACARLRACEAVPVVCALAHAVHGAIGITEELPLGLYTARLHEWRATGMSEDDCAELLGRRVLADGERTLLDVVRGMVSAAHA
>LR134480.1|VEI27554.1|3543922_3545116_-|thiolase
MSVHPDPVVIVAARRTPIGAFQGALAHYSAPQLGAHALAAAVRQAGLQPDAAQEALMGCCLFAGLGQAPARQAVLGAGLPTDVQATTLSKMCGSGMKAAMLAHDMLRAGSADVVLAGGMESMSNAPHLIPKARQGYRLGDGQLLDHMYRDGLQDAYEGRLMGHYADLAAREYGFSREQQDAYAHESVLRAQRSVAEGEFAEEIAPIAGLARRGAPAAMVAVDETPGLCDVSRLASLKPVFNADGTVTAGNASSISDGAAALVLTRQAHAERLGLAPQARIVGHATAALPPGQFPAAPVRAIARLFERVGWDRDSVDLFEINEAFAVVTMIALRELGLPAERVNVNGGACALGHPVGATGARLIVTLMHALRRRGLRRGVACLCLGGGEATAIAIERA
>LR134480.1|VEI27564.1|3555681_3556152_-|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>LR134480.1|VEI27565.1|3556240_3556585_-|Uncharacterized-protein-conserved-in-bacteria
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>LR134480.1|VEI27566.1|3556684_3558130_-|GntR-family-transcriptional-regulator
MTVATSSPSGAGWQPVRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRRGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPTGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYRRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>LR134480.1|VEI27567.1|3558213_3559188_+|DMT-superfamily-permease
MRRHGKPGRPLSPIQRQIFPMSPPSAQASAPSASPHAPSWEGYGYGLIGVLVFALTLPMTRLAVGELSPLLVGLGRALLAAVPAAALLWLTRSRRPDRAEWSGIVLAAVGIVVGWPVASTLAMASVPAAHGAVFNGLLPLSTAVFAAWRSGERPSPAFWSFAVLGAVLVAGYALRQGHGALQPGDLWLLLAVVLGGMGYAEGARASRTLGGWRTICWALVVSVPALLPAVLWLAHDAAWPSLPVAGAFAYLAFGSMFLGFFAWYRGLAIGGIARVGQIQLLQPFLTVVAAALLFNEQVEPITYVFAVAVVLVIAGGRRAMVRKA
>LR134480.1|VEI27568.1|3559184_3559844_+|amino-acid-efflux-protein
MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSGLTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLERLPWLYSTLKYGGAAYLLYLAWKIATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIATLVCGVVNLPSVGVWAAFGMALRRWLHRPAAVRAFNVGMAVLLVVSLYPVGLDLLALYTG
>LR134480.1|VEI27569.1|3559933_3560857_+|lipoprotein
MVSLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQRWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDAPTVLYLHGARWNLNGSAFRMEGWTRMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLGGAIAIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTTPMLLLHGTADRVVPHTMSDELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVADFVRDAGRGYAGRQGAPPPLTASRPGT
>LR134480.1|VEI27570.1|3560862_3561318_-|Predicted-membrane-protein
MSSSSKQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDMGVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTMPVRVAHAVGFELGLVLIIVPLAAWWLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA
>LR134480.1|VEI27571.1|3561314_3562232_-|Uncharacterized-protein-conserved-in-bacteria
MRNQAGDVRCRRIAVCGDDFGMNEAIDGALIELAGAGRLSAVSCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLDPDWIDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAPGLQFGLPLAEAAKARLIGALGAGALARAAGQEGWQTNRRMLGVYGFTGGPRRYAGLLHHWLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHPELGTWLARNGLRIVRLSQVRGRQASQESGKVRNVPHSGSFRRLASRL
>LR134480.1|VEI27572.1|3562250_3562646_+|bactoprenol-linked-glucose-translocase
MRGLLRQIAWFIAVGCAAAATHWAVAVACVEWAGLPPLGANVVGWLLAFVVSFTGHFRLTFRHLAASWTIAARRFFLVSALGFAINELSYAWLLHATSLPYDVLLALVLIGLAFLTFVASRLWAFRHRHAP
>LR134480.1|VEI27573.1|3562605_3564204_-|4-amino-4-deoxy-l-arabinose-lipid-A-transferase
MQPHAVSPGQARPWPLPAAGWLLLAVGVWLAFLSWMRPLALPDEGRYAGVAWDMLRNGSFAVPLIDGMPYFHKPPLYYWLAELSFRLFGVNEWAARLPSALAAWASAVALYLFVRRHRDAASATLCVLVLATLPLFFGGAQYANMDMLVAGMITLCVLAGADTALRVRGGQAWRAMALATGVCAALAMLAKGLIGLVLPGAILLAWLAWRRDWRGLRALLWPPAILAFAVVAVPWFWLMQVRYPGFFQYFFVHQHFERFAQTGFNNVQPFWFYLPVIAGLALPWSLWAGGLLRKQFWAADADPDGLRRLALVWLAVIVAFFSMPQSKLVGYIMPVLPPLAFLLAEVVMGALRDPAVARATRRMARVSALVAVAICVTAVFVASFNARGSSRELALSLRGELRPDDTLVALHTYPFDLQLYAHAARPMWVVDDWSNPEIPKRDNWRRELYDAVQFEPALGERLLVSADTFQQRLCQAPEGSRYWVWGTAADEEAYAPLRGQAARFADARRSLWLVLVDEAFKGRVCDGTPTGG

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Crispr_ID: LR134480_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134480_7

3910147-3910227

Orphan

Consensus_repeat	Method
GTGCCTGTCCCCGCGGGGACAGGCACCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134480_7

>merge|LR134480|7|3910147-3910227|CRISPRCasFinder
GTGCCTGTCCCCGCGGGGACAGGCACCTTGTGCCGGCCCTCCGCAACGCTCGGGTGCCTGTCCCCACGGGGACAGGCACCT

>LR134480|7|7|3910147-3910227|CRISPRCasFinder
GTGCCTGTCCCCGCGGGGACAGGCACCT	TGTGCCGGCCCTCCGCAACGCTCGG
GTGCCTGTCCCCACGGGGACAGGCACCT

Protein	Signature genes	Signature genes Name	Protein_function
LR134480.1\|VEI27907.1\|3921989_3922460_-\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|180240
LR134480.1\|VEI27889.1\|3900823_3901060_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134480.1\|VEI27899.1\|3912357_3914460_-\|primosomal-protein	unknown	unknown	gnl\|CDD\|235514
LR134480.1\|VEI27905.1\|3919861_3921403_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
LR134480.1\|VEI27891.1\|3903110_3904079_+\|succinylglutamate-desuccinylase	unknown	unknown	gnl\|CDD\|349481
LR134480.1\|VEI27897.1\|3908981_3910115_+\|peptidase	unknown	unknown	gnl\|CDD\|349881
LR134480.1\|VEI27896.1\|3908032_3908938_+\|poly(aspartic-acid)-Hydrolase	unknown	unknown	gnl\|CDD\|226040
LR134480.1\|VEI27893.1\|3905122_3906043_+\|binding-protein-dependent-transport-permease	unknown	unknown	gnl\|CDD\|224094
LR134480.1\|VEI27898.1\|3910245_3912315_-\|ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|130146
LR134480.1\|VEI27892.1\|3904137_3905115_+\|binding-protein-dependent-transport-permease	unknown	unknown	gnl\|CDD\|223674
LR134480.1\|VEI27895.1\|3907019_3908030_+\|oligopeptide-transport-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226967
LR134480.1\|VEI27900.1\|3914766_3915843_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
LR134480.1\|VEI27903.1\|3917414_3918815_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
LR134480.1\|VEI27904.1\|3918857_3919763_-\|ATP-synthase-F0F1-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
LR134480.1\|VEI27890.1\|3901358_3902987_+\|binding-protein-dependent-transport-protein	unknown	unknown	gnl\|CDD\|173863
LR134480.1\|VEI27888.1\|3899835_3900696_+\|Nicotinamide-nucleotide-repair-protein	unknown	unknown	gnl\|CDD\|238576
LR134480.1\|VEI27894.1\|3906039_3907023_+\|oligopeptide-transport-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
LR134480.1\|VEI27906.1\|3921437_3921977_-\|ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|235593
LR134480.1\|VEI27902.1\|3916982_3917405_-\|ATP-synthase-F0F1-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
LR134480.1\|VEI27901.1\|3915918_3916800_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|185070

Protein	Function_ID	Function_description	E-value
LR134480.1\|VEI27907.1\|3921989_3922460_-\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	1.82968e-51
LR134480.1\|VEI27899.1\|3912357_3914460_-\|primosomal-protein	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
LR134480.1\|VEI27905.1\|3919861_3921403_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
LR134480.1\|VEI27891.1\|3903110_3904079_+\|succinylglutamate-desuccinylase	gnl\|CDD\|349481	cd06910, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup. A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.	1.07699e-79
LR134480.1\|VEI27897.1\|3908981_3910115_+\|peptidase	gnl\|CDD\|349881	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme. Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells.	2.21946e-158
LR134480.1\|VEI27896.1\|3908032_3908938_+\|poly(aspartic-acid)-Hydrolase	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	9.10797e-08
LR134480.1\|VEI27893.1\|3905122_3906043_+\|binding-protein-dependent-transport-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.17965e-94
LR134480.1\|VEI27898.1\|3910245_3912315_-\|ATP-dependent-DNA-helicase	gnl\|CDD\|130146	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
LR134480.1\|VEI27892.1\|3904137_3905115_+\|binding-protein-dependent-transport-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.49002e-115
LR134480.1\|VEI27895.1\|3907019_3908030_+\|oligopeptide-transport-ATP-binding-protein	gnl\|CDD\|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	5.08932e-129
LR134480.1\|VEI27900.1\|3914766_3915843_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
LR134480.1\|VEI27903.1\|3917414_3918815_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
LR134480.1\|VEI27904.1\|3918857_3919763_-\|ATP-synthase-F0F1-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	1.30561e-149
LR134480.1\|VEI27890.1\|3901358_3902987_+\|binding-protein-dependent-transport-protein	gnl\|CDD\|173863	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
LR134480.1\|VEI27888.1\|3899835_3900696_+\|Nicotinamide-nucleotide-repair-protein	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	5.19791e-73
LR134480.1\|VEI27894.1\|3906039_3907023_+\|oligopeptide-transport-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.03649e-169
LR134480.1\|VEI27906.1\|3921437_3921977_-\|ATP-synthase-subunit-delta	gnl\|CDD\|235593	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.	1.16567e-65
LR134480.1\|VEI27902.1\|3916982_3917405_-\|ATP-synthase-F0F1-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	1.40936e-54
LR134480.1\|VEI27901.1\|3915918_3916800_-\|Uncharacterised-protein	gnl\|CDD\|185070	PRK15115, PRK15115, response regulator GlrR; Provisional.	3.09259e-05

>LR134480.1|VEI27897.1|3908981_3910115_+|peptidase
MTTTLPDTDQLVAGIQSWIQCESPSNSPAGVTAMAHLAAEYARAVGLAVEIRPLNAEVGPLVYATNRAAGDTRPGVLVLGHLDTVHPIGTLQDNPCRIDGDRLYGPGSYDMKAGIYLALSALRGLPSPHATALPIDFLLVPDEETGSHASREHIEHYAARAKYALVCEPARPNGGKCVTARKGTGMLRLNVKGRPAHAGMQHEKGRSAIREMAHQVLELESMTDYERGITVSVGTIAGGTVTNTVPALCRCVVDFRVPDMGAAEDVLRRMRNLCAVGPDMELDIDVELNRPPMVKTEAATALLQLAQDFAAQAGFALEDAPMTGGGSDANFTSAMGVPTLDGLGADGDGAHTLNEYILVSTLAARMRFWELLLKALH
>LR134480.1|VEI27896.1|3908032_3908938_+|poly(aspartic-acid)-Hydrolase
MKPADLTNADRIALELGHAGRNAIPYLDDDRNADRPFTLNTYRPYGYTPDRPVVVVQHGVLRNGADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTFEHRFPEGLDGVGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARARHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDGQAMSQVCASLWFDGRMPDAAELARLAGSQSA
>LR134480.1|VEI27895.1|3907019_3908030_+|oligopeptide-transport-ATP-binding-protein
MTTSDLPVIELRDVHKRFEHRPDMAQRLLALTGKPLDRRTVHAVNGVSLSVRRGEVLGLVGESGCGKSTLGRVVAGLHRESAGELLYQGRPAAQLRGADRLAYVLGVQMIFQDPQASLNPRQRLRQILAEALKVHKLAPPAEIPARVDRALAEVGLDREYRERYSHQISGGQRQRIGIARALMVEPRFLVCDEPVAALDVSIQAQVINLFMDLREQRGLTYLFISHDLGVVRHISDRVAIMYLGKIVEQASSAEIFAHPNHPYTQALMAEVPDVGRRGRVFTPIRGEIPSPLDPPPGCTFHPRCPHAMPRCREQAPVLREIAPGHVSACHLNDTAS
>LR134480.1|VEI27894.1|3906039_3907023_+|oligopeptide-transport-ATP-binding-protein
MKDILLDVRGLRTAFHTEAGAWPAVDGVDLVVRRGEIVGLVGESGSGKSVTGFSLLGLIDPPGEVVEGEIRFKGKDLRKLGEEQMRQLRGNRIAMIFQDPLMTLNPVLRIGEQMAEAILTHENVPRAQAMERCREALEMVGIPSPEKRLRSFPHEFSGGMRQRVAIAIAMLNKPDLIICDEPTTALDVTIQGQILYRMQEICRQHDTALIWITHDLGVVAELADRVAVMYAGRIVESGPVDAVLDAPRHPYTRGLLESMPAQTQPGARLRQIDGMAPTLSARPWGCAFRPRCPNAVTRCTEQAPSVTQEGPRSYRCYVPIASETATA
>LR134480.1|VEI27893.1|3905122_3906043_+|binding-protein-dependent-transport-permease
MANPPSNGRTRTVHPLSETPRRAQILKKLHSRPTVRGSVIALLALVALILLAPYFAPQNPYDLASLNLLDGRLPPRSPTMDGGFYWLGTDDQGRDMFSAILYGLRISLLVGLTAVVLATAIGSLVGLLAAYAGGVIDAVLMRIVDFILGFPTILVALVLLAMMGRGVDKVILALVVVQWAHYARIMRGRALQERRKEYVEAAANLGFPAWRIMLFHLLPNCMAPVMVFATIQIANAIVLEATLSFLGVGVPVTEPSLGLLIANGFQYLLSGDYWISLFPGLALLLLILSINIVGDRLRESLDPRRA
>LR134480.1|VEI27892.1|3904137_3905115_+|binding-protein-dependent-transport-permease
MALFILRRLIQSLFVLLAVSVVVFFAVYAVGDPIELLVSPEASADARQAMIARLGLDLPVWQQYGNFLWRALHGDLGNSFVHGIPAISLILQRIPATFELVLVAIVLTCTIGIPLGLVAGLHRDRPLGRGIMATSVLGFSLPNFWQGMMLILLFSVWLGWLPASGRGDTANLFGVPLSILTLDGWSHVIMPAINLAVANVALVLRLTASGVVEAQSQEYVKFARAKGIKPGRIVRRHILRNILIPVVTVIGMEFGHLIAYSTITETVFAWPGMGKLLIDSVYQLDRPVVVAYVMLVTLIFVVINLVVDILYAALDPRVQLVAPAQ
>LR134480.1|VEI27891.1|3903110_3904079_+|succinylglutamate-desuccinylase
MSPPPAVAAVRPFELACPRLDAERVGNGATPGVWHFDAGLPGRHVLLTALIHGNELCGAWALKDALAAGLRPRRGKLTLAFCNLAAFDRFDPLNYAPARFVDEDMNRVWSADKLAAPDTQERRRARALLPWVEQADWLLDFHSMSNADEPLQLTGTQPRNIELALKLGNPAHLVADAGHAAGVRLRDYGRFGAEGENGTRSLLIECGFHGAPASRTVARDILARFLLEAGTLAADDIPPGWLADAAPRQRALRVTHAVAARSADFRFAQPWQGLERIARAGTVIGWSDGEPVATPYDDCVLIMPSLANLRPGVTVVRLAQPI
>LR134480.1|VEI27890.1|3901358_3902987_+|binding-protein-dependent-transport-protein
MKLRTTLALLATSAGLAAAPGSASAQSLKIALSSEPTSADPHYHKQTQNDAFSAHVYSSLIGRDADMKLVPALATSWKNLDDLTWEFKLRDDVKFSNGKPFTSEDVLFTICRTLNNETNVSQSYMDTTKRIADVQTPDAHTVIIKTAAPLPLLPAELARSLPIVWNGIVEHGKLTFNPKEGCGVTGPWPTVADFNNGKDAIGTGPYKLKSYVKGTGIELERNDNYWGPKPYWKDVKMVPVPNAGPRLTGLLSGDFDVIENPAARDLPRIKSNPQFGFVATPSTRLIFFQPDVGRNPSPLVKSADGKNPLQDLRVRQAISMAIDRKTIVTRLMDGIATPAYQYMPDGMFGGVPNAPEIKYDPEGAKKLLAEAGYANGFELTISTPNDRYVNDGQIAQAVAQYLSRVGIKANVDAMTASLYFPKRAKREFSFSMGGWPAEVGEASALFQLWVASLDSPRSLGTSNYGGFSNAEFDKVFTEALVTVDVAKREKLLQQSTQIALDNVPLIPLHFESSIWAFRKGLTYEGRRDQFTLAMSVQPADQK
>LR134480.1|VEI27889.1|3900823_3901060_+|Uncharacterised-protein
MSDLTLSHNARLTDSLERELLRGAMEDQSNTIRPLAAVKAAAVGVGRGVRAVFAFIDEVNESMNRARAQSAHYTGSQW
>LR134480.1|VEI27888.1|3899835_3900696_+|Nicotinamide-nucleotide-repair-protein
MDTSSSSLPAIERQHLPALFAARPTDAHKGSCGTLGVIGGGPGMVGAALLAARAGLKVGAGKVLVGLVAETPPLPCDPMQPELMLRDFRGLLEAGLGIDAWTAGCGCGMDALAANALSELFQLRGDAALVLDADGLNLLAAGAVQPRWGDAPVVLTPHPAEAGRLLGLSTEAVQADRPAAARTLAARYGAWVVLKGAGSIVCDPAGACRINRTGNPGLATAGTGDVLAGILGALLAQRIAPEQAVPGAVWLHGAAADALVTHGIGPIGLTAGELADSARRLRNSRA
>LR134480.1|VEI27898.1|3910245_3912315_-|ATP-dependent-DNA-helicase
MSASDTSIGSGLNPSQKEAVLYLDGPCLVLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKAAREMAERVKTLVDPKLAKGLTISTFHALGVRLLREEAAHAGLKPQFSILDADDAMSIIQELLATTDRGRLREVQSIISLWKNALLTPDQAAAAAITPTEVEAVTVYRGYAATLAAYQAVDFDDLIRIPAELLERNEEVRTRWQNRVRYLLVDEYQDTNVCQYRLVQLLTGVRAMFTAVGDDDQAIYAWRGATIENLAKLTTDYPNLKLIKLEQNYRSVQRILAAANNVIERNPKLFEKKLWSDLGHGEPIIVSPMNGDEHEAESIAMKVSAARFERQAQWKDFAILYRSNHQSRVLEQALRNLKIPYTISGGQSFFDKAEVRDILAYLRLVANDEDDPAFIRAATTPKRGIGQGTLQTLGQYAAQRQCSLLAAVDEAGLESLLAPRQLEPLRTFAEFVRRIQWRAGRGVEGQPARAPEPAGQILDDLLSAIQYERYLYDMLEERPAQTRWQNVLELTGWLKRKAEEDGMTLFDLVQHVALVTMLERGEEEEPDAVKLSTLHASKGLEYPHVYLAGVEEGLLPHLGKDDEDSGDPARAAETLATRIQEERRLMYVGITRAQRSLNLSWCKKRRRAREDVVREPSRFIEEMGLGDAKVQEDEATRAMSPKERLGMLKALLKKD
>LR134480.1|VEI27899.1|3912357_3914460_-|primosomal-protein
MSDASSADPALPAADAAGVWVRVALDVPLPGPFDYRSAAPLPLGARVIVPFGRRKLVGVVVEHPAQPSIDPAQVREVEQPLEDLPPMPADWMRLARFAADYYQRPLGEVMLPVLPPPLRKPSAYQGKRSGLGPVARLDARKPRAEAAVAAEPDQAPELNEAQREAVDTIGALSAFQPVLLHGVTGSGKTEVYLHAAARVLQAGRQVLLMVPEINLTPQLEGALRARLEALVGPQGVAILHSGLADGERVQAWARAQRGQARLLLGTRMAIFAPLPELGLIVVDEEHDPSYKQQEGLRYSARDLAIWRARDLDIPVVLGSATPSLESWQHAERGRYLRLTLPGRARASSLPEIRLIDTRRLQLKQGLAPQFIEAIGQRLERGEQSLVFLNRRGYAPVLHCASCAWVSHCPRCSTFTVLHRGPGAGGYRLQCHHCGYQAPVPRACPECGDQDLEPMGRGTQRIEEQLAEWFPQARIARIDADSTRRKGSAQALFAAVHAGEVDIMVGTQMVAKGHDFARLGLVGVLNADSMLFAHDFRAPERLFAQLMQVAGRAGRHAAGAQVLIQTGYPEQPVYQALLRHDYAGFARHALQEREDTGLPPFAYQALLTAEARELTVAQGFLQRARDLATGEPWPGVDAITLYDPVPLRVVRVAHVERAQLLIESTSRPALQGFLTAWAACLPQLAAEARVRWQLEVDPLEI
>LR134480.1|VEI27900.1|3914766_3915843_-|uroporphyrinogen-decarboxylase
MSVAPLKNDVFLRALLREPVPYTPIWLMRQAGRYLPEYNATRARAGSFMGLAQNPDYACEVTLQPLARYPLDAAILFSDILTVPHAMGLGLDFAPGEGPRFAHPVRDESDVAKLAVPDMDSLRYVFDAVRTIRRELDGRVPLIGFAGSPWTIACYMVEGRGSDDYRLIKSMLYGRPDLLHRILEINAEATRHYLNAQIDAGAQAVMLFDSWGGVLADGLFQQFSLAYTRRVVEGLTREREGRRVPVIVFTKGGGQWLEEIAACGCDAVGLDWTVNLGTARRRVADAVALQGNLDPMTLFGGAQAVRAEARRTLDAFGPVGKGGHVFNLGHGISQYSPPEVVSELVDEVHTYSRALHAG
>LR134480.1|VEI27901.1|3915918_3916800_-|Uncharacterised-protein
MRALLECAVLVMPDQPSWVGAWLAAVRGPEARLADRLRLHEYPLSGGRDGLALGQAAMSLRRFDALLLPVQASTLGWARLVLAQASPALSTPVLVLVRDLTAPAIADLLRLGARDFLRVPACLEELRVRASRAWRAIPPPAAGTRAAVPVPGAEPGGGRGPGAPTDPGEGDGYRLPGMPETADASAAAPCMLAQTRAPYAATLGDARMAVQRELPFRQAKAQVVGRFERAYLRGALARHGGNVAQAARAACKHRRAFWALMRKHGIDARPYREGVAGAWPYETAPPRDPADEA
>LR134480.1|VEI27902.1|3916982_3917405_-|ATP-synthase-F0F1-subunit-epsilon
MATLHVDVVSAEEAIFTGEAKFVVLPGEAGELGILPGHTPLISRIRPGTVKIVRADEGEENIFVAGGILEVQPGSVTVLADTAIRAADLDEARAVAAREKAEEALRNAKDKADIAVVEAELAMLAAQAVAARKLRQGRTH
>LR134480.1|VEI27903.1|3917414_3918815_-|F0F1-ATP-synthase-subunit-beta
MSNGTIVQCIGAVVDIQFPRDNMPKIYEALTLVDEGSSFAEKGLTLEVQQQLGDGVVRTIALGSSDGLRRGMQVAGTGAPISVPVGHGTLGRIMDVLGRPIDEAGPIASDEKRAIHQPAPRFDELSPSVELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMEESNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAEKFRDEGRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFQHLDSTVVLSRDIAALGIYPAVDPLDSSSRQLDPQVVGEEHYQVARGVQQTLQRYKELRDIIAILGMDELSPEDKQAVARARKIQRFLSQPFHVAEVFTGSPGKYVSLAETIRGFKMIVDGECDALPEQAFYMVGTIDEAFEKAKKLQ
>LR134480.1|VEI27904.1|3918857_3919763_-|ATP-synthase-F0F1-subunit-gamma
MPGIKEIRTKIKSVQNTRKITKAMEMVAASKMRKAQERMRAGRPYATKVREIAAHLMQANPEYSHPYLVEREVKAVGVVLVTTDKGLCGGLNTNISRVTLSKLKEFEQRSIKVQATAFGNKGLGLLTRIGAKLVSQEVQLGDKPDLDRLLGAIKVQLDDYLEGRIDALYVATTRFVNTMRQEPVFLRLLPLSNGLDDPFQSGVETLAKTAEIKSDYSWDYIYEPDAKSVIDDLLQRYVEGLLYQAVAENMASEQSARMVAMKSASDNAKKVIGDLQLVYNKTRQAAITKEISEIVGGAAAV
>LR134480.1|VEI27905.1|3919861_3921403_-|F0F1-ATP-synthase-subunit-alpha
MQLNPSEISELLKSRIEGLGASTDVRTQGTVVSVTDGITRIHGLSDVMQGEMLEFPNNVFGVALNLERDSVGAVVLGDYTGVSEGDQVKTTGRILEVPVGPELKGRVVNTLGDAIDGKGPINTTQTDIIEKVAPGVIARRSVSQPLQTGIKAIDSMVPIGRGQRELIIGDRQTGKTAVAVDTIISQKGKGVTCVYVAIGQKASTINNVVRKLEEHGAMEYTIVVAAAASDSAAMQYLAAYAGCTMGEYFRDRGEDALIVYDDLTKQAWAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAARVNEEYVEKFTNGAVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETDLFNAGVRPAINAGISVSRVGGAAQTKVIKKLSGGIRTDLAQYRELAAFAQFASDLDDATRRQLERGKRVVELLKQPQYQPLQVWELAVSLYAVNNGYLDDVDVAQILAFEKSLKDHLKAKHAALIQRIEDTKELSKDDEAELAAAVQDFKKHGAF
>LR134480.1|VEI27906.1|3921437_3921977_-|ATP-synthase-subunit-delta
MAELSTVARPYAEALFGAARDDKAGLAVWADLVSEMAQVAANPDVREAMADPRLDDKQRSEVFTGLIKSQLPQAARNFIELLVKNDRLLLLPVIATQFVALKNRHEGTAQAEITSAFELSDAQVKELIAALELKFGLKLKPHVSVDQELIGGVRVAVGDQVLDTSVKAQLARLRDTLAA
>LR134480.1|VEI27907.1|3921989_3922460_-|F0F1-ATP-synthase-subunit-B
MNLNATIFFQMLVFFVLGWFTMKFVWPPLTKAIDERRQKIADGLAAAEKGKADLAQAQARVSLIEASAKSETHARIIEAEKQAASVIEQARREAEAERARIVAQAAQDAAQEVQRAREALCDDVAALAVKGAEQILKREVDARAHAELLNQLKAQL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
LR134480_2	2.1\|553112\|26\|LR134480\|CRISPRCasFinder	553112-553137	26	LR134480.1	567870-567895	1.0
LR134480_4	4.1\|1150737\|38\|LR134480\|CRISPRCasFinder	1150737-1150774	38	LR134480.1	584561-584598	1.0
LR134480_4	4.1\|1150737\|38\|LR134480\|CRISPRCasFinder	1150737-1150774	38	LR134480.1	584645-584682	1.0

1. spacer 2.1|553112|26|LR134480|CRISPRCasFinder matches to position: 567870-567895, mismatch: 0, identity: 1.0

gccggggaagtggcaggcgtggaggt	CRISPR spacer
gccggggaagtggcaggcgtggaggt	Protospacer
**************************

2. spacer 4.1|1150737|38|LR134480|CRISPRCasFinder matches to position: 584561-584598, mismatch: 0, identity: 1.0

gcaagcccgcacagcgggcgcagcgtgggggcgcgacc	CRISPR spacer
gcaagcccgcacagcgggcgcagcgtgggggcgcgacc	Protospacer
**************************************

3. spacer 4.1|1150737|38|LR134480|CRISPRCasFinder matches to position: 584645-584682, mismatch: 0, identity: 1.0

gcaagcccgcacagcgggcgcagcgtgggggcgcgacc	CRISPR spacer
gcaagcccgcacagcgggcgcagcgtgggggcgcgacc	Protospacer
**************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134480_2	2.1\|553112\|26\|LR134480\|CRISPRCasFinder	553112-553137	26	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	62762-62787	4	0.846
LR134480_2	2.1\|553112\|26\|LR134480\|CRISPRCasFinder	553112-553137	26	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	315533-315558	4	0.846
LR134480_2	2.1\|553112\|26\|LR134480\|CRISPRCasFinder	553112-553137	26	NC_017588	Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence	183427-183452	4	0.846
LR134480_2	2.1\|553112\|26\|LR134480\|CRISPRCasFinder	553112-553137	26	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2721627-2721652	4	0.846

1. spacer 2.1|553112|26|LR134480|CRISPRCasFinder matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
ggcggggaagtggggggcgtggaggg	Protospacer
* *********** .**********

2. spacer 2.1|553112|26|LR134480|CRISPRCasFinder matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
ggcggggaagtggggggcgtggaggg	Protospacer
* *********** .**********

3. spacer 2.1|553112|26|LR134480|CRISPRCasFinder matches to NC_017588 (Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
ggcggggaagtggggggcgtggaggg	Protospacer
* *********** .**********

4. spacer 2.1|553112|26|LR134480|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

gccggggaagtggcaggcgtggaggt	CRISPR spacer
gccggggaagtggcaggcggcgcagt	Protospacer
*******************  * .**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

876485 : 925450

Burkholderia_virus(19.35%)

integrase,head,tail,portal,protease,terminase,capsid

attL 886079:886098|attR 925640:925659

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI25127.1\|876485_877337_-\|protease	Predicted metalloprotease	A0A1I9SA48	Rhodococcus_phage	7.0e-37	35.3
VEI25128.1\|877398_878025_+	translation factor	NA	NA	NA	NA
VEI25129.1\|878081_878729_+	membrane-associated peptidase	NA	NA	NA	NA
VEI25130.1\|878814_879720_+	dihydrodipicolinate synthase	NA	NA	NA	NA
VEI25131.1\|879737_880859_+	lipoprotein	NA	NA	NA	NA
VEI25132.1\|880946_881573_-	serotype 3 fimbrial subunit	NA	NA	NA	NA
VEI25133.1\|881814_882027_-	Uncharacterised protein	NA	NA	NA	NA
VEI25134.1\|882307_883495_-	Cupin superfamily protein	NA	NA	NA	NA
VEI25135.1\|883491_886089_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	9.7e-21	22.4
886079:886098	attL	NA	NA	NA	NA
VEI25136.1\|886145_887135_-\|integrase	integrase	A0A2H4J8E5	uncultured_Caudovirales_phage	2.3e-95	54.4
VEI25137.1\|887112_887325_-	Uncharacterised protein	NA	NA	NA	NA
VEI25138.1\|887480_888380_-	Uncharacterised protein	A0A2H5BQE8	Pseudomonas_phage	6.8e-14	66.2
VEI25139.1\|888376_888526_-	Uncharacterised protein	NA	NA	NA	NA
VEI25140.1\|889245_889902_-	Uncharacterised protein	NA	NA	NA	NA
VEI25141.1\|889898_890846_-	Uncharacterised protein	A0A0U4JP11	Pseudomonas_phage	8.1e-42	39.7
VEI25142.1\|890848_891076_-	phage-related membrane protein	NA	NA	NA	NA
VEI25143.1\|891675_892293_-	DnaJ central domain	NA	NA	NA	NA
VEI25144.1\|892303_892453_-	Uncharacterised protein	NA	NA	NA	NA
VEI25145.1\|892561_892759_+	Uncharacterised protein	NA	NA	NA	NA
VEI25146.1\|893105_893837_-	LexA repressor	J7I4M9	Acinetobacter_phage	1.2e-29	35.8
VEI25147.1\|893937_894210_+	phage protein	NA	NA	NA	NA
VEI25148.1\|894313_894844_+	Uncharacterised protein	B7SYH6	Stenotrophomonas_phage	4.1e-27	38.9
VEI25149.1\|895138_895441_+	Uncharacterised protein	NA	NA	NA	NA
VEI25150.1\|895437_895926_+	Protein of uncharacterised function (DUF1364)	NA	NA	NA	NA
VEI25151.1\|895922_896753_+	phage protein	A0A0R6PKK6	Moraxella_phage	1.3e-14	40.2
VEI25152.1\|896736_897435_+	phage protein	F8TUP9	EBPR_podovirus	8.1e-23	38.0
VEI25153.1\|897572_897920_+	Uncharacterised protein	NA	NA	NA	NA
VEI25154.1\|898063_898321_+	Uncharacterised protein	R9TNL4	Vibrio_phage	7.5e-19	53.4
VEI25155.1\|898356_898983_+	Uncharacterised protein	NA	NA	NA	NA
VEI25156.1\|899379_899658_-	phage protein	K4NZP3	Burkholderia_phage	1.3e-08	60.4
VEI25157.1\|899644_899911_-	phage protein	NA	NA	NA	NA
VEI25158.1\|900225_900474_+	Uncharacterised protein	NA	NA	NA	NA
VEI25159.1\|900470_900809_+	HNH endonuclease	B5WZZ4	Pseudomonas_phage	2.6e-27	56.2
VEI25160.1\|900977_901574_+	Terminase small subunit	A0A076GD11	Sinorhizobium_phage	1.1e-12	33.9
VEI25161.1\|901570_903253_+\|terminase	Phage terminase-like protein, large subunit	I7H415	Xanthomonas_virus	1.8e-116	42.1
VEI25162.1\|903249_903432_+	Uncharacterised protein	NA	NA	NA	NA
VEI25163.1\|903434_904694_+\|portal	phage portal protein	Q8W6U7	Burkholderia_virus	9.1e-142	57.9
VEI25164.1\|904690_905641_+\|protease	Probable protease sohB	A4JX00	Burkholderia_virus	3.5e-85	56.2
VEI25165.1\|905704_907030_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	Q8W6U5	Burkholderia_virus	2.4e-145	66.7
VEI25166.1\|907092_907260_+	Uncharacterised protein	NA	NA	NA	NA
VEI25167.1\|907262_907784_+	Uncharacterised protein	Q8W6U3	Burkholderia_virus	3.2e-32	45.3
VEI25168.1\|907785_908124_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
VEI25169.1\|908116_908548_+	phage protein, HK97 gp10 family	NA	NA	NA	NA
VEI25170.1\|908544_908895_+	Protein of uncharacterised function (DUF3168)	Q9MCS8	Enterobacteria_phage	8.5e-05	34.5
VEI25171.1\|908957_909422_+	Uncharacterised protein	Q3HQT6	Burkholderia_phage	9.4e-28	43.6
VEI25172.1\|909428_909890_+\|tail	Phage tail assembly chaperone	NA	NA	NA	NA
VEI25173.1\|909889_910183_+	Uncharacterised protein	K7P7L5	Enterobacteria_phage	1.2e-12	51.4
VEI25174.1\|910221_913767_+	bacteriophage-related transmembrane protein	K7PH87	Enterobacterial_phage	3.7e-31	22.7
VEI25175.1\|913770_914103_+	Phage-related protein	I6PBN7	Cronobacter_phage	1.2e-16	40.4
VEI25176.1\|914105_915677_+	Uncharacterised protein	A0A0B5A596	Achromobacter_phage	9.3e-43	45.2
VEI25177.1\|915678_916179_+	Uncharacterised protein	NA	NA	NA	NA
VEI25178.1\|916178_916925_+\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	7.5e-59	45.9
VEI25179.1\|916928_917711_+	NlpC/P60 family	Q8W6T2	Burkholderia_virus	1.2e-59	47.1
VEI25180.1\|917725_918091_+	Uncharacterised protein	NA	NA	NA	NA
VEI25181.1\|918179_918788_+\|tail	Phage-related protein, tail component	F1C572	Cronobacter_phage	3.8e-45	52.3
VEI25182.1\|918784_922387_+	Domain of uncharacterised function (DUF1983)	A0A2R3UA88	Siphoviridae_environmental_samples	5.1e-230	41.2
VEI25183.1\|922391_922808_+	Uncharacterised protein	NA	NA	NA	NA
VEI25184.1\|922788_923001_+	Uncharacterised protein	NA	NA	NA	NA
VEI25185.1\|923062_923506_+	phage-related membrane protein	A0A0U5LBV3	unidentified_phage	3.3e-14	40.0
VEI25186.1\|923502_924051_+	Uncharacterised protein	I6NSS1	Burkholderia_phage	9.1e-30	54.1
VEI25187.1\|924219_924435_+	Uncharacterised protein	NA	NA	NA	NA
VEI25188.1\|924415_924745_-	centaurin, alpha	NA	NA	NA	NA
VEI25189.1\|924796_925450_-	Uncharacterised ACR, COG2135	C7BGE4	Burkholderia_phage	3.3e-34	38.3
925640:925659	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1487267 : 1495330

Moraxella_phage(28.57%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI25697.1\|1487267_1487852_+	IMPACT family member yigZ	A0A1X9I5T8	Streptococcus_phage	2.1e-16	46.8
VEI25698.1\|1487870_1488254_-	thioredoxin 2	V9SJ74	Achromobacter_phage	8.1e-09	25.8
VEI25699.1\|1488389_1489415_-	luciferase-like monooxygenase	NA	NA	NA	NA
VEI25700.1\|1489620_1490913_-	permease	A0A0R6PHV4	Moraxella_phage	1.7e-66	36.0
VEI25701.1\|1491047_1492088_+\|protease	glycoprotease	A0A0R6PI74	Moraxella_phage	9.3e-92	51.6
VEI25702.1\|1492132_1492768_-	glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA
VEI25703.1\|1492905_1493664_+	stationary-phase survival protein	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-69	51.2
VEI25704.1\|1493648_1494428_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.8e-32	46.9
VEI25705.1\|1494445_1495330_+	peptidase	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134480

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection