CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134486	Actinobacillus equuli strain NCTC9435 genome assembly, chromosome: 1	1 crisprs	DEDDh,cas3f,cas3-cas2,cas1,cas6f,cas7f,cas5f,cas8f,DinG,cas3	1	8	18	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134486_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134486_1

338731-340613

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAG	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTGAAG	CRT
TTTCTAAGCTGCCTATACGGCAGTGAAG	PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGAAG	PILER-CR

31 spacers

cas1,cas3-cas2,cas3f,cas6f,cas7f,cas5f,cas8f

The CRISPR arrays of LR134486_1

>merge|LR134486|1|338731-340613|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GAACTAAGCTACCTATACGGCAGTGAAGACGTTAATTTTCGTCATAAATTTCGCGGGGGATTTCTAAGCTGCCTATACGGCAGTGAAGTAAACCGCTACGCTTCCCGCATGGAAACAATGTTTCTAAGCTGCCTATACGGCAGTGAAGTGATAAGCCCTGTGTAATTGGCTTTGTTTTTCTAAGCTGCCTATACGGCAGTGAAGCCGCTGAACCGCAAGCGGTTCGCTTACGTCATTTTCTAAGCCGCCTATACGGCAGTGAAGTCACAACTACAAGATAGTTGCCACTCTTAATCTTTCTAAGCTGCCTATACGGCAGTGAAGTAAGTCGTGTACCCAGCGCTCGGCGATTTCGTTTTCTAAGCTGCCTATACGGCAGTGAAGGGATTGGTATCCATCGCATTAACGAAAATTGATTTCTAAGCTGCCTATACGGCAGTGAAGTGTCTGCATTGGGATTTAGTGGTTTTTCTGAATTTCTAAGCTGCCTATACGGCAGTGAAGAAGGTTGGAATGGTTGCCCTTGCGGTTGTGGTTTTCTAAGCTGCCTATACGGCAGTGAAGTGGTTATGTGCATTCAGCCAGAACTATCTCGTTTTCTAAGCTGCCTATACGGCAGTGAAGGTTCAAACTTAGATAGGGCCGTTTCATTTACTTTCTAAGCTGCCTATACGGCAGTGAAGCAAGTAGATTCATTCATCTGTTGCACTCGGTTTTCTAAGCTGCCTATACGGCAGTGAAGATCAACCATTTGCACGCAGTTGTTTCCTCTGTTTCTAAGCTGCCTATACGGCAGTGAAGTGTGTAAATTAACACGTAATTCTTTGATTTCTTTTCTAAGCTGCCTATACGGCAGTGAAGGCGGTGTGTTTACGTCAAATTTATATTTCATCTTTCTAAGCTGCCTATACGGCAGTGAAGAAATCAAAGTCGGCGCATACGCTTTAGATAGATTTCTAAGCTGCCTATACGGCAGTGAAGCAACACAAAGCGGATATGGATATTCGGTCGGTTTTCTAAGCTGCCTATACGGCAGTGAAGGTCACGGAGCGGTTTAGCAAAATACTGCTTATTTTCTAAGCTGCCTATACGGCAGTGAAGCGCTTCCAACAGGTGGATCAACGCTTCCAACATTTCTAAGCTGCCTATACGGCAGTGAAGCGGTTTTAGATAGCACCTGTGTTTACTCCCACATTTCTAAGCTGCCTATACGGCAGTGAAGCAAATTTTGCAATGTTATGCCCGATGAATTGCTTTCTAAGCTGCCTATACGGCAGTGAAGTATGCCGATAGTCGCTGGCTCTAACAACCTGATTTCTAAGCTGCCTATACGGCAGTGAAGCTAAAACTGCTTGTTGCATTTCTACTGATAGTTTTCTAAGCTGCCTATACGGCAGTGAAGTGATTAGAACTCAATTAATTTTGGTGCAAGAATTTCTAAGCTGCCTATACGGCAGTGAAGGGAGAAAAAATGGAAGGATGGAACGGATAAATTTCTAAGCTGCCTATACGGCAGTGAAGCAATGTATTTCTTCCGCATTGGCTCCCGTTTGTTTTCTAAGCTGCCTATACGGCAGTGAAGTCTCTTCAGTTGCTTAGACATATTTTTGATATTTTCTAAGCTGCCTATACGGCAGTGAAGCTGGAAAGATTGGCACAAATGCCGGGCGCACAATTTCTAAGCTGCCTATACGGCAGTGAAGCAGCAAATGATTCAGAAAATCCACATCGGTAATTTCTAAGCTGCCTATACGGCAGTGAAGTAAACTAAGAAGAAGCGCAACACTTCAATCTTTTTCTAAGCTGCCTATACGGCAGTGAAGGGCTAAATACCAGATTTCGATTTGCGGTGGATTTTCTAAGCTGCCTATACGGCAGTGAAG

>LR134486|1|1|338731-340613|CRISPRCasFinder
GAACTAAGCTACCTATACGGCAGTGAAG	ACGTTAATTTTCGTCATAAATTTCGCGGGGGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TAAACCGCTACGCTTCCCGCATGGAAACAATG
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGATAAGCCCTGTGTAATTGGCTTTGTT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CCGCTGAACCGCAAGCGGTTCGCTTACGTCAT
TTTCTAAGCCGCCTATACGGCAGTGAAG	TCACAACTACAAGATAGTTGCCACTCTTAATC
TTTCTAAGCTGCCTATACGGCAGTGAAG	TAAGTCGTGTACCCAGCGCTCGGCGATTTCGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGATTGGTATCCATCGCATTAACGAAAATTGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGTCTGCATTGGGATTTAGTGGTTTTTCTGAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	AAGGTTGGAATGGTTGCCCTTGCGGTTGTGGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGGTTATGTGCATTCAGCCAGAACTATCTCGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GTTCAAACTTAGATAGGGCCGTTTCATTTAC
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAAGTAGATTCATTCATCTGTTGCACTCGGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	ATCAACCATTTGCACGCAGTTGTTTCCTCTG
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGTGTAAATTAACACGTAATTCTTTGATTTCT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GCGGTGTGTTTACGTCAAATTTATATTTCATC
TTTCTAAGCTGCCTATACGGCAGTGAAG	AAATCAAAGTCGGCGCATACGCTTTAGATAGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAACACAAAGCGGATATGGATATTCGGTCGGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GTCACGGAGCGGTTTAGCAAAATACTGCTTAT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CGCTTCCAACAGGTGGATCAACGCTTCCAACA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CGGTTTTAGATAGCACCTGTGTTTACTCCCACA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAAATTTTGCAATGTTATGCCCGATGAATTGC
TTTCTAAGCTGCCTATACGGCAGTGAAG	TATGCCGATAGTCGCTGGCTCTAACAACCTGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CTAAAACTGCTTGTTGCATTTCTACTGATAGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGATTAGAACTCAATTAATTTTGGTGCAAGAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGAGAAAAAATGGAAGGATGGAACGGATAAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAATGTATTTCTTCCGCATTGGCTCCCGTTTGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TCTCTTCAGTTGCTTAGACATATTTTTGATAT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CTGGAAAGATTGGCACAAATGCCGGGCGCACAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAGCAAATGATTCAGAAAATCCACATCGGTAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TAAACTAAGAAGAAGCGCAACACTTCAATCTT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGCTAAATACCAGATTTCGATTTGCGGTGGAT
TTTCTAAGCTGCCTATACGGCAGTGAAG

>LR134486|1|1|338731-340613|CRT
GAACTAAGCTACCTATACGGCAGTGAAG	ACGTTAATTTTCGTCATAAATTTCGCGGGGGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TAAACCGCTACGCTTCCCGCATGGAAACAATG
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGATAAGCCCTGTGTAATTGGCTTTGTT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CCGCTGAACCGCAAGCGGTTCGCTTACGTCAT
TTTCTAAGCCGCCTATACGGCAGTGAAG	TCACAACTACAAGATAGTTGCCACTCTTAATC
TTTCTAAGCTGCCTATACGGCAGTGAAG	TAAGTCGTGTACCCAGCGCTCGGCGATTTCGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGATTGGTATCCATCGCATTAACGAAAATTGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGTCTGCATTGGGATTTAGTGGTTTTTCTGAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	AAGGTTGGAATGGTTGCCCTTGCGGTTGTGGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGGTTATGTGCATTCAGCCAGAACTATCTCGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GTTCAAACTTAGATAGGGCCGTTTCATTTAC
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAAGTAGATTCATTCATCTGTTGCACTCGGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	ATCAACCATTTGCACGCAGTTGTTTCCTCTG
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGTGTAAATTAACACGTAATTCTTTGATTTCT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GCGGTGTGTTTACGTCAAATTTATATTTCATC
TTTCTAAGCTGCCTATACGGCAGTGAAG	AAATCAAAGTCGGCGCATACGCTTTAGATAGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAACACAAAGCGGATATGGATATTCGGTCGGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GTCACGGAGCGGTTTAGCAAAATACTGCTTAT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CGCTTCCAACAGGTGGATCAACGCTTCCAACA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CGGTTTTAGATAGCACCTGTGTTTACTCCCACA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAAATTTTGCAATGTTATGCCCGATGAATTGC
TTTCTAAGCTGCCTATACGGCAGTGAAG	TATGCCGATAGTCGCTGGCTCTAACAACCTGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CTAAAACTGCTTGTTGCATTTCTACTGATAGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGATTAGAACTCAATTAATTTTGGTGCAAGAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGAGAAAAAATGGAAGGATGGAACGGATAAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAATGTATTTCTTCCGCATTGGCTCCCGTTTGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TCTCTTCAGTTGCTTAGACATATTTTTGATAT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CTGGAAAGATTGGCACAAATGCCGGGCGCACAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAGCAAATGATTCAGAAAATCCACATCGGTAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TAAACTAAGAAGAAGCGCAACACTTCAATCTT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGCTAAATACCAGATTTCGATTTGCGGTGGAT
TTTCTAAGCTGCCTATACGGCAGTGAAG

>LR134486|1|1|338791-338994|PILER-CR
TTTCTAAGCTGCCTATACGGCAGTGAAG	TAAACCGCTACGCTTCCCGCATGGAAACAATG
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGATAAGCCCTGTGTAATTGGCTTTGTT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CCGCTGAACCGCAAGCGGTTCGCTTACGTCAT
TTTCTAAGCCGCCTATACGGCAGTGAAGTCACAACTACAAGATAGTTGCCACTCTTAATCTTTCTAAGCTGCCTATACGGCAGTGAAGTAAGTCGTGTACCCAGCGCTCGGCGATTTCGTTTTCTAAGCTGCCTATACGGCAGTGAAGGGATTGGTATCCATCGCATTAACGAAAATTGATTTCTAAGCTGCCTATACGGCAGTGAAGTGTCTGCATTGGGATTTAGTGGTTTTTCTGAATTTCTAAGCTGCCTATACGGCAGTGAAGAAGGTTGGAATGGTTGCCCTTGCGGTTGTGGTTTTCTAAGCTGCCTATACGGCAGTGAAGTGGTTATGTGCATTCAGCCAGAACTATCTCGTTTTCTAAGCTGCCTATACGGCAGTGAAGGTTCAAACTTAGATAGGGCCGTTTCATTTACTTTCTAAGCTGCCTATACGGCAGTGAAGCAAGTAGATTCATTCATCTGTTGCACTCGGTTTTCTAAGCTGCCTATACGGCAGTGAAGATCAACCATTTGCACGCAGTTGTTTCCTCTGTTTCTAAGCTGCCTATACGGCAGTGAAGTGTGTAAATTAACACGTAATTCTTTGATTTCTTTTCTAAGCTGCCTATACGGCAGTGAAG	GCGGTGTGTTTACGTCAAATTTATATTTCATC
TTTCTAAGCTGCCTATACGGCAGTGAAG	AAATCAAAGTCGGCGCATACGCTTTAGATAGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAACACAAAGCGGATATGGATATTCGGTCGGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GTCACGGAGCGGTTTAGCAAAATACTGCTTAT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CGCTTCCAACAGGTGGATCAACGCTTCCAACA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CGGTTTTAGATAGCACCTGTGTTTACTCCCACA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAAATTTTGCAATGTTATGCCCGATGAATTGC
TTTCTAAGCTGCCTATACGGCAGTGAAG	TATGCCGATAGTCGCTGGCTCTAACAACCTGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CTAAAACTGCTTGTTGCATTTCTACTGATAGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGATTAGAACTCAATTAATTTTGGTGCAAGAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGAGAAAAAATGGAAGGATGGAACGGATAAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAATGTATTTCTTCCGCATTGGCTCCCGTTTGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TCTCTTCAGTTGCTTAGACATATTTTTGATAT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CTGGAAAGATTGGCACAAATGCCGGGCGCACAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAGCAAATGATTCAGAAAATCCACATCGGTAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TAAACTAAGAAGAAGCGCAACACTTCAATCTT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGCTAAATACCAGATTTCGATTTGCGGTGGAT


>LR134486|1|2|339564-340613|PILER-CR
	TAAACCGCTACGCTTCCCGCATGGAAACAATG
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGATAAGCCCTGTGTAATTGGCTTTGTT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CCGCTGAACCGCAAGCGGTTCGCTTACGTCAT
TTTCTAAGCCGCCTATACGGCAGTGAAGTCACAACTACAAGATAGTTGCCACTCTTAATCTTTCTAAGCTGCCTATACGGCAGTGAAGTAAGTCGTGTACCCAGCGCTCGGCGATTTCGTTTTCTAAGCTGCCTATACGGCAGTGAAGGGATTGGTATCCATCGCATTAACGAAAATTGATTTCTAAGCTGCCTATACGGCAGTGAAGTGTCTGCATTGGGATTTAGTGGTTTTTCTGAATTTCTAAGCTGCCTATACGGCAGTGAAGAAGGTTGGAATGGTTGCCCTTGCGGTTGTGGTTTTCTAAGCTGCCTATACGGCAGTGAAGTGGTTATGTGCATTCAGCCAGAACTATCTCGTTTTCTAAGCTGCCTATACGGCAGTGAAGGTTCAAACTTAGATAGGGCCGTTTCATTTACTTTCTAAGCTGCCTATACGGCAGTGAAGCAAGTAGATTCATTCATCTGTTGCACTCGGTTTTCTAAGCTGCCTATACGGCAGTGAAGATCAACCATTTGCACGCAGTTGTTTCCTCTGTTTCTAAGCTGCCTATACGGCAGTGAAGTGTGTAAATTAACACGTAATTCTTTGATTTCTTTTCTAAGCTGCCTATACGGCAGTGAAG	GCGGTGTGTTTACGTCAAATTTATATTTCATC
TTTCTAAGCTGCCTATACGGCAGTGAAG	AAATCAAAGTCGGCGCATACGCTTTAGATAGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAACACAAAGCGGATATGGATATTCGGTCGGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GTCACGGAGCGGTTTAGCAAAATACTGCTTAT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CGCTTCCAACAGGTGGATCAACGCTTCCAACA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CGGTTTTAGATAGCACCTGTGTTTACTCCCACA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAAATTTTGCAATGTTATGCCCGATGAATTGC
TTTCTAAGCTGCCTATACGGCAGTGAAG	TATGCCGATAGTCGCTGGCTCTAACAACCTGA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CTAAAACTGCTTGTTGCATTTCTACTGATAGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TGATTAGAACTCAATTAATTTTGGTGCAAGAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGAGAAAAAATGGAAGGATGGAACGGATAAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAATGTATTTCTTCCGCATTGGCTCCCGTTTGT
TTTCTAAGCTGCCTATACGGCAGTGAAG	TCTCTTCAGTTGCTTAGACATATTTTTGATAT
TTTCTAAGCTGCCTATACGGCAGTGAAG	CTGGAAAGATTGGCACAAATGCCGGGCGCACAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	CAGCAAATGATTCAGAAAATCCACATCGGTAA
TTTCTAAGCTGCCTATACGGCAGTGAAG	TAAACTAAGAAGAAGCGCAACACTTCAATCTT
TTTCTAAGCTGCCTATACGGCAGTGAAG	GGCTAAATACCAGATTTCGATTTGCGGTGGAT
TTTCTAAGCTGCCTATACGGCAGTGAAG

Protein	Signature genes	Signature genes Name	Protein_function
LR134486.1\|VEI44827.1\|343042_343543_-\|CRISPR-associated-protein	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
LR134486.1\|VEI44823.1\|341738_341936_-\|CRISPR-associated-protein	cas7f	cd09737_cas7f_CAS-I-F	gnl\|CDD\|378222
LR134486.1\|VEI44814.1\|334093_334306_-\|inorganic-polyphosphate/ATP-NAD-kinase	unknown	unknown	gnl\|CDD\|235122
LR134486.1\|VEI44820.1\|338313_338466_-\|CRISPR-associated-protein	unknown	unknown	gnl\|CDD\|132676
LR134486.1\|VEI44825.1\|342331_342760_-\|CRISPR-associated-protein	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
LR134486.1\|VEI44812.1\|332723_333230_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
LR134486.1\|VEI44817.1\|336652_336886_-\|helicase	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
LR134486.1\|VEI44826.1\|342789_342969_-\|CRISPR-associated-protein	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
LR134486.1\|VEI44811.1\|332518_332677_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
LR134486.1\|VEI44813.1\|333459_333978_-\|inorganic-polyphosphate/ATP-NAD-kinase	unknown	unknown	gnl\|CDD\|167337
LR134486.1\|VEI44828.1\|343891_344416_-\|CRISPR-associated-protein	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|378220
LR134486.1\|VEI44829.1\|345015_345432_+\|threonyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234752
LR134486.1\|VEI44822.1\|341423_341684_-\|CRISPR-associated-protein	cas7f	cd09737_cas7f_CAS-I-F	gnl\|CDD\|378222
LR134486.1\|VEI44821.1\|340961_341321_-\|CRISPR-associated-protein-Cas6/Csy4,-subtype-I-F/YPEST	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|187870
LR134486.1\|VEI44830.1\|345428_345701_+\|threonyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234752
LR134486.1\|VEI44816.1\|335584_336493_-\|helicase	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
LR134486.1\|VEI44815.1\|335019_335505_-\|helicase	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
LR134486.1\|VEI44824.1\|342181_342313_-\|CRISPR-associated-protein	unknown	unknown	gnl\|CDD\|378222
LR134486.1\|VEI44818.1\|337010_337403_-\|helicase	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
LR134486.1\|VEI44819.1\|337756_338299_-\|CRISPR-associated-protein	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849

Protein	Function_ID	Function_description	E-value
LR134486.1\|VEI44827.1\|343042_343543_-\|CRISPR-associated-protein	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.24222e-26
LR134486.1\|VEI44823.1\|341738_341936_-\|CRISPR-associated-protein	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	8.73023e-17
LR134486.1\|VEI44814.1\|334093_334306_-\|inorganic-polyphosphate/ATP-NAD-kinase	gnl\|CDD\|235122	PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	2.44027e-19
LR134486.1\|VEI44820.1\|338313_338466_-\|CRISPR-associated-protein	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	5.22762e-10
LR134486.1\|VEI44825.1\|342331_342760_-\|CRISPR-associated-protein	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	3.62945e-50
LR134486.1\|VEI44812.1\|332723_333230_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	4.10981e-120
LR134486.1\|VEI44817.1\|336652_336886_-\|helicase	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	5.67823e-14
LR134486.1\|VEI44826.1\|342789_342969_-\|CRISPR-associated-protein	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	2.08088e-09
LR134486.1\|VEI44811.1\|332518_332677_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	5.31467e-30
LR134486.1\|VEI44813.1\|333459_333978_-\|inorganic-polyphosphate/ATP-NAD-kinase	gnl\|CDD\|167337	PRK02231, ppnK, NAD(+) kinase.	6.31203e-123
LR134486.1\|VEI44828.1\|343891_344416_-\|CRISPR-associated-protein	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	5.52637e-68
LR134486.1\|VEI44829.1\|345015_345432_+\|threonyl-tRNA-synthetase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	2.85349e-85
LR134486.1\|VEI44822.1\|341423_341684_-\|CRISPR-associated-protein	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	2.98121e-19
LR134486.1\|VEI44821.1\|340961_341321_-\|CRISPR-associated-protein-Cas6/Csy4,-subtype-I-F/YPEST	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	8.47596e-36
LR134486.1\|VEI44830.1\|345428_345701_+\|threonyl-tRNA-synthetase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	6.28128e-52
LR134486.1\|VEI44816.1\|335584_336493_-\|helicase	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	2.62639e-123
LR134486.1\|VEI44815.1\|335019_335505_-\|helicase	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	8.55862e-58
LR134486.1\|VEI44824.1\|342181_342313_-\|CRISPR-associated-protein	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	1.83629e-08
LR134486.1\|VEI44818.1\|337010_337403_-\|helicase	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	5.2132e-29
LR134486.1\|VEI44819.1\|337756_338299_-\|CRISPR-associated-protein	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.9915e-79

>LR134486.1|VEI44820.1|338313_338466_-|CRISPR-associated-protein
MVGFCSGGGTPLFNGTETEIGCDFLALKVNIVRSNIYSNGVAFGLTITSG
>LR134486.1|VEI44819.1|337756_338299_-|CRISPR-associated-protein
MQLARLQLLLRTWNKFDWEYAQDKLTALVQHYQAEFTNVKDSQSLLAAEGRLTAKLYALANQATLNDESFKRESGKEGANQFLDHGNYLAYGLGATACWVLGLPHGLAILHGKTRRGGLVFDAADIIKDAIILPQAFISAQNGDNEKQFRQACINNLIRFEALDIIINTLKQLASEGANI
>LR134486.1|VEI44818.1|337010_337403_-|helicase
MLHDIGKANIAFQQKLKPKAKFFPDCYRHEWISARLFEAMIAGCDTDEQWLARLANWQNYIEENPDWLPNLTLIADKSDYPHNFSHFPPLAKVVLWLILSHHKLPFTQKTLDCHSDQERILSEHFMLKQL
>LR134486.1|VEI44817.1|336652_336886_-|helicase
MQRWANKALNHAPLRELSQLNKTINDPFLLILSRLCLIVGDHNYSSAPADRQLGDLNFFEKLLANTDKKPNSQTSTG
>LR134486.1|VEI44816.1|335584_336493_-|helicase
MQSESEQAGFFGVNMASTGCGKTLANAKIMYGLSNQDGARFTIALGLRVLTLQTGLALRQKLMLSSEQLAVLVGGSATKQLFELQNESVQNGSESVQEWFEGNEVYGMNFLESGIADEEFGTLLADNKAKKLLYAPIISCTLDHMIQATETIRGGKHIVPLLRLLTSDLVLDEPDDFSQSDLPALSRLVHLAGMFGSKVLLSSATLTPDLISGLFNAYQAGRKIYNRHQGINPELPICCAWIDEYKQQQQKCATVKEFEQYHAQFTASRAEKLMQSPIRHKAEIIQLPPFSSVEIKTLTIRC
>LR134486.1|VEI44815.1|335019_335505_-|helicase
MGLIRFANIKPMIPLVETLFKTPLKTQFSDYKIHLCCYHSQQLLLLRSKLEEKLDRILNRSEPEALFSQPEIISALTQDKAVHHIFIVLGSPVTEVGRDHDYDWAIVDPSSMRSIIQLAGRVWRHRPEKLPHRRIFYCYRQTGEAYKRKSWLGTDILPSGF
>LR134486.1|VEI44814.1|334093_334306_-|inorganic-polyphosphate/ATP-NAD-kinase
MGKPRHDIALETHLAVYNWLKDRRYDVLLEENIARQLNLPDGKSLEEIGQQANLVIVIGGTAICSVWLVN
>LR134486.1|VEI44813.1|333459_333978_-|inorganic-polyphosphate/ATP-NAD-kinase
MIEERFLLEARIERNGKIIAINNALNEVVIHPSQVARIIEFEVYIDGKFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPNMNAIALVPMHPHTLSSRPLVIDGDSQISLRFAQYNQPSLEVSCDGQYDLPFTPEDRIIVTKSPDTLHLLHLNNYNYFTVLGSKLGWSSKLF
>LR134486.1|VEI44812.1|332723_333230_-|serine-hydroxymethyltransferase
MFTANMNIQDYDPILWQAIENENRRQEEHIELIASENYASPRVMQAQGSQFTNKYAEGYPGKRYYGGCEYADIVEQLAIDRAKQLFGADYVNVQPHSGSQANAAVYGALIQPNDTILGMDLAHGGHLTHGAKVSFSGKIYNSVLYGITAEGLIDYEDVRQKALECKPK
>LR134486.1|VEI44811.1|332518_332677_-|serine-hydroxymethyltransferase
MREIADEVGAYLFVDMAHVAGLIAAGLYPNPLPHAHVVTTTTHKHSAALAAV
>LR134486.1|VEI44821.1|340961_341321_-|CRISPR-associated-protein-Cas6/Csy4,-subtype-I-F/YPEST
MSELTHYIELKAIPQVDILQTDVIAHSLQILHKFLPLYQGEIGLGFPAYGLGRTLGGIIRVFGNEQHCTQIKTQLIGEGLQDYVLITSVTPVPEEIVEYYRYQRVHRKGQSAIRRTEKF
>LR134486.1|VEI44822.1|341423_341684_-|CRISPR-associated-protein
MGRGQEVYPSQELVLDTGTRKSKILYEINNKAGMHSQKSAMRFVLLTLGMQKMPLSRLQPNLMAQSLILVRRSASQKKNRFLYTIR
>LR134486.1|VEI44823.1|341738_341936_-|CRISPR-associated-protein
MSELAKRYATNLANARWLWRNRISAETIQVSIKVADDVVVFEMPNNCRLTVLNKRMKNFKNCKLY
>LR134486.1|VEI44824.1|342181_342313_-|CRISPR-associated-protein
MTKLTTASVLAFERKLDISDATFTQKNSMSDAPEIAVTIRENR
>LR134486.1|VEI44825.1|342331_342760_-|CRISPR-associated-protein
MPAFVLMDAKQTLADITQSLQNGISNNEITICPATPNANALDALLEVATLHHIPLSEHATSQEWETFNVNQGKGWLVPIPVGYQAISPLFTAGEMQNCRTTEYPSQYVETVYSLGKWVFPFSLPDDLLQCFGATTPHKIISI
>LR134486.1|VEI44826.1|342789_342969_-|CRISPR-associated-protein
MDISLVVEMEVKDPELYYALNSQDSEQKTQFLEHCKKLLMQQRIAGGSVFKLRMLNSLI
>LR134486.1|VEI44827.1|343042_343543_-|CRISPR-associated-protein
MEPRLPTGLVRKYWLDPQRAKLNGEEQFHSALTQQDWISEVEQRFAAWLNALLKKRFPKHQDDFTATEYNEWRKYFRKNYIDNYAAYIRRYYELPKLYLLFDHVEIQAANTISSPITYGFPALTGFTGAIHALSRKLFPQQVELGGVMIACHDYQILGYKIVIFQI
>LR134486.1|VEI44828.1|343891_344416_-|CRISPR-associated-protein
MARQLKFGTHIAKGIHPDAKGNNINFRANLNLPSTLVGSQLIDKLVLDANGNAAALPLAAFFDIMIDEVNKRTLKDLLLTDEPCLDGCFSDDHSLSEQYKIAFQMALKGNLNSPETHERNKQVLWVNSISAIEDNHYTCLIPLYPSSFTHAIYNKLNQARFSEENKQAREIVIK
>LR134486.1|VEI44829.1|345015_345432_+|threonyl-tRNA-synthetase
MPIITLPDGSQRQFDNPVSVMEVAQSIGAGLAKATIAGRVNGERRDACDIISEDSSLEIITAKDEDGLEIIRHSCAHLLGHAIKQLFPDVKMAIGPTIDNGFYYDVDLERSLTQEDLDAIEKRMLELAKTNYDVVKNV
>LR134486.1|VEI44830.1|345428_345701_+|threonyl-tRNA-synthetase
MSWQEARDTFEKRGEPYKMAILDENIERTATPALYHHEEYIDMCRGPHVPNMRFCHHFKLQKVAGAYWRGDSKNKMLQRIYGTAWADKNN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134486_1	1.7\|339115\|32\|LR134486\|CRISPRCasFinder,CRT	339115-339146	32	LR134486.1	1286547-1286578	0	1.0

1. spacer 1.7|339115|32|LR134486|CRISPRCasFinder,CRT matches to position: 1286547-1286578, mismatch: 0, identity: 1.0

ggattggtatccatcgcattaacgaaaattga	CRISPR spacer
ggattggtatccatcgcattaacgaaaattga	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134486_1	1.8\|339175\|32\|LR134486\|CRISPRCasFinder,CRT	339175-339206	32	AP014217	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C88-MedDCM-OCT-S36-C169, * SEQUENCING IN PROGRESS *	12044-12075	7	0.781
LR134486_1	1.27\|340313\|32\|LR134486\|CRISPRCasFinder,CRT,PILER-CR	340313-340344	32	MN694457	Marine virus AFVG_250M832, complete genome	19024-19055	7	0.781
LR134486_1	1.27\|340313\|32\|LR134486\|CRISPRCasFinder,CRT,PILER-CR	340313-340344	32	MN693808	Marine virus AFVG_250M831, complete genome	19019-19050	7	0.781
LR134486_1	1.4\|338935\|32\|LR134486\|CRISPRCasFinder,CRT,PILER-CR	338935-338966	32	NC_004719	Streptomyces avermitilis MA-4680 = NBRC 14893 plasmid SAP1, complete sequence	74783-74814	8	0.75
LR134486_1	1.15\|339592\|32\|LR134486\|CRISPRCasFinder,CRT,PILER-CR	339592-339623	32	MN087708	Edwardsiella phage vB_EtaM-IME523, complete genome	67146-67177	8	0.75
LR134486_1	1.15\|339592\|32\|LR134486\|CRISPRCasFinder,CRT,PILER-CR	339592-339623	32	NC_048849	Enterobacter phage vB_EclM_CIP9, complete genome	132177-132208	8	0.75
LR134486_1	1.13\|339473\|31\|LR134486\|CRISPRCasFinder,CRT	339473-339503	31	KX130727	Escherichia phage phT4A, partial genome	160833-160863	9	0.71
LR134486_1	1.14\|339532\|32\|LR134486\|CRISPRCasFinder,CRT	339532-339563	32	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	694960-694991	9	0.719
LR134486_1	1.14\|339532\|32\|LR134486\|CRISPRCasFinder,CRT	339532-339563	32	MT773556	Myoviridae sp. isolate BML_4 genomic sequence	225032-225063	9	0.719
LR134486_1	1.23\|340073\|32\|LR134486\|CRISPRCasFinder,CRT,PILER-CR	340073-340104	32	NZ_CP046076	Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence	54771-54802	9	0.719
LR134486_1	1.23\|340073\|32\|LR134486\|CRISPRCasFinder,CRT,PILER-CR	340073-340104	32	NZ_LR135227	Enterococcus faecium isolate E7025 plasmid 2	137720-137751	9	0.719
LR134486_1	1.23\|340073\|32\|LR134486\|CRISPRCasFinder,CRT,PILER-CR	340073-340104	32	NZ_CP025687	Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence	124289-124320	9	0.719
LR134486_1	1.23\|340073\|32\|LR134486\|CRISPRCasFinder,CRT,PILER-CR	340073-340104	32	NZ_CP040877	Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence	37236-37267	9	0.719
LR134486_1	1.27\|340313\|32\|LR134486\|CRISPRCasFinder,CRT,PILER-CR	340313-340344	32	AP014398	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S46-C79, * SEQUENCING IN PROGRESS *	23040-23071	9	0.719
LR134486_1	1.27\|340313\|32\|LR134486\|CRISPRCasFinder,CRT,PILER-CR	340313-340344	32	LT614807	Cronobacter phage Pet-CM3-4 genome assembly, chromosome: I	75040-75071	9	0.719
LR134486_1	1.8\|339175\|32\|LR134486\|CRISPRCasFinder,CRT	339175-339206	32	LT960552	Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite	105390-105421	10	0.688
LR134486_1	1.8\|339175\|32\|LR134486\|CRISPRCasFinder,CRT	339175-339206	32	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	105052-105083	10	0.688
LR134486_1	1.8\|339175\|32\|LR134486\|CRISPRCasFinder,CRT	339175-339206	32	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	105052-105083	10	0.688
LR134486_1	1.14\|339532\|32\|LR134486\|CRISPRCasFinder,CRT	339532-339563	32	NC_021575	Anabaena variabilis ATCC 29413 plasmid D, complete sequence	7263-7294	10	0.688
LR134486_1	1.14\|339532\|32\|LR134486\|CRISPRCasFinder,CRT	339532-339563	32	NZ_CP047246	Trichormus variabilis 0441 plasmid unnamed4, complete sequence	23259-23290	10	0.688
LR134486_1	1.9\|339235\|32\|LR134486\|CRISPRCasFinder,CRT	339235-339266	32	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	1122753-1122784	11	0.656

1. spacer 1.8|339175|32|LR134486|CRISPRCasFinder,CRT matches to AP014217 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C88-MedDCM-OCT-S36-C169, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

tgtctgcattgggatttagtggtttttctgaa	CRISPR spacer
cacctacatttggatttagtggtttttcagca	Protospacer
...**.**** ***************** * *

2. spacer 1.27|340313|32|LR134486|CRISPRCasFinder,CRT,PILER-CR matches to MN694457 (Marine virus AFVG_250M832, complete genome) position: , mismatch: 7, identity: 0.781

tctcttcag---ttgcttagacatatttttgatat	CRISPR spacer
---gttgaaatcttgcttagacatattgttgatat	Protospacer
    ** *.   *************** *******

3. spacer 1.27|340313|32|LR134486|CRISPRCasFinder,CRT,PILER-CR matches to MN693808 (Marine virus AFVG_250M831, complete genome) position: , mismatch: 7, identity: 0.781

tctcttcag---ttgcttagacatatttttgatat	CRISPR spacer
---gttgaaatcttgcttagacatattgttgatat	Protospacer
    ** *.   *************** *******

4. spacer 1.4|338935|32|LR134486|CRISPRCasFinder,CRT,PILER-CR matches to NC_004719 (Streptomyces avermitilis MA-4680 = NBRC 14893 plasmid SAP1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgctgaaccgcaagcggttcgcttacgtcat-	CRISPR spacer
ccgctgacccgcaagcggtccgcgc-ccccgta	Protospacer
******* ***********.*** . * .*.*

5. spacer 1.15|339592|32|LR134486|CRISPRCasFinder,CRT,PILER-CR matches to MN087708 (Edwardsiella phage vB_EtaM-IME523, complete genome) position: , mismatch: 8, identity: 0.75

gcggtgtgtttacgtcaaatttatatttcatc	CRISPR spacer
caacggtgtttacgtcaaattcaaatttcatt	Protospacer
  .  ****************.* *******.

6. spacer 1.15|339592|32|LR134486|CRISPRCasFinder,CRT,PILER-CR matches to NC_048849 (Enterobacter phage vB_EclM_CIP9, complete genome) position: , mismatch: 8, identity: 0.75

gcggtgtgtttacgtcaaatttatatttcatc	CRISPR spacer
caacggtgtttacgtcaaattcaaatttcatt	Protospacer
  .  ****************.* *******.

7. spacer 1.13|339473|31|LR134486|CRISPRCasFinder,CRT matches to KX130727 (Escherichia phage phT4A, partial genome) position: , mismatch: 9, identity: 0.71

atcaaccatttgcacgcagttgtttcctctg	CRISPR spacer
gagaaccatcagcacgcagttgtttcaggta	Protospacer
.  ******. ***************   *.

8. spacer 1.14|339532|32|LR134486|CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 9, identity: 0.719

tgtgtaaattaacacgtaattctttgatttct	CRISPR spacer
cactaaaactaacacgtaattctttaattaat	Protospacer
...  ***.****************.***  *

9. spacer 1.14|339532|32|LR134486|CRISPRCasFinder,CRT matches to MT773556 (Myoviridae sp. isolate BML_4 genomic sequence) position: , mismatch: 9, identity: 0.719

tgtgtaaattaacacgtaattctttgatttct	CRISPR spacer
aacaaaaattaacagataattctttgattaat	Protospacer
 ... ********* .*************  *

10. spacer 1.23|340073|32|LR134486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046076 (Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence) position: , mismatch: 9, identity: 0.719

ctaaaactgcttgttgcatttctactgatagt	CRISPR spacer
ttctttcaacttgtttcatttctactaatagt	Protospacer
.*    * .****** **********.*****

11. spacer 1.23|340073|32|LR134486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR135227 (Enterococcus faecium isolate E7025 plasmid 2) position: , mismatch: 9, identity: 0.719

ctaaaactgcttgttgcatttctactgatagt	CRISPR spacer
ttctttcaacttgtttcatttctactaatagt	Protospacer
.*    * .****** **********.*****

12. spacer 1.23|340073|32|LR134486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025687 (Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence) position: , mismatch: 9, identity: 0.719

ctaaaactgcttgttgcatttctactgatagt	CRISPR spacer
ttctttcaacttgtttcatttctactaatagt	Protospacer
.*    * .****** **********.*****

13. spacer 1.23|340073|32|LR134486|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040877 (Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ctaaaactgcttgttgcatttctactgatagt	CRISPR spacer
ttctttcaacttgtttcatttctactaatagt	Protospacer
.*    * .****** **********.*****

14. spacer 1.27|340313|32|LR134486|CRISPRCasFinder,CRT,PILER-CR matches to AP014398 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S46-C79, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

tctcttcagttgcttagacatatttttgatat	CRISPR spacer
catcttcacttgcttcgacatattttccacca	Protospacer
. ****** ****** **********. *.

15. spacer 1.27|340313|32|LR134486|CRISPRCasFinder,CRT,PILER-CR matches to LT614807 (Cronobacter phage Pet-CM3-4 genome assembly, chromosome: I) position: , mismatch: 9, identity: 0.719

tctcttcagttgcttagacatatttttgatat	CRISPR spacer
cccaccaatttgcttaaagatatttttgatat	Protospacer
.*. .. * *******.* *************

16. spacer 1.8|339175|32|LR134486|CRISPRCasFinder,CRT matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 10, identity: 0.688

tgtctgcattgggatttagtggtttttctgaa	CRISPR spacer
ccgctgcatttggatttattggttttaactca	Protospacer
.  ******* ******* *******  .  *

17. spacer 1.8|339175|32|LR134486|CRISPRCasFinder,CRT matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 10, identity: 0.688

tgtctgcattgggatttagtggtttttctgaa	CRISPR spacer
ccgctgcatttggatttattggttttaactca	Protospacer
.  ******* ******* *******  .  *

18. spacer 1.8|339175|32|LR134486|CRISPRCasFinder,CRT matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 10, identity: 0.688

tgtctgcattgggatttagtggtttttctgaa	CRISPR spacer
ccgctgcatttggatttattggttttaactca	Protospacer
.  ******* ******* *******  .  *

19. spacer 1.14|339532|32|LR134486|CRISPRCasFinder,CRT matches to NC_021575 (Anabaena variabilis ATCC 29413 plasmid D, complete sequence) position: , mismatch: 10, identity: 0.688

tgtgtaaattaacacgtaattctttgatttct	CRISPR spacer
cgtataaattatcacgtaattcttcataaaca	Protospacer
.**.******* ************..    *

20. spacer 1.14|339532|32|LR134486|CRISPRCasFinder,CRT matches to NZ_CP047246 (Trichormus variabilis 0441 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.688

tgtgtaaattaacacgtaattctttgatttct	CRISPR spacer
cgtataaattatcacgtaattcttcataaaca	Protospacer
.**.******* ************..    *

21. spacer 1.9|339235|32|LR134486|CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 11, identity: 0.656

aaggttggaatggttgcccttgcggttgtggt	CRISPR spacer
gcccatggaatggaagcccttgcggttggaca	Protospacer
.    ********  ************* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11201 : 27847

Bacillus_virus(30.0%)

tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI44155.1\|11201_11405_-\|protease	serine protease	NA	NA	NA	NA
VEI44156.1\|11421_11658_-\|protease	serine protease	NA	NA	NA	NA
VEI44157.1\|11699_12614_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	7.3e-24	36.3
VEI44158.1\|12881_13685_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-22	31.7
VEI44159.1\|13748_14429_+	permease	NA	NA	NA	NA
VEI44160.1\|14470_14668_+	organic solvent resistance ABC transporter periplasmic protein	NA	NA	NA	NA
VEI44161.1\|14673_14994_+	organic solvent resistance ABC transporter periplasmic protein	NA	NA	NA	NA
VEI44162.1\|15015_15651_+	organic solvent resistance ABC transporter auxiliary protein	NA	NA	NA	NA
VEI44163.1\|15811_16078_+	putative anti-sigma factor B antagonist	NA	NA	NA	NA
VEI44164.1\|16082_16343_+	transcriptional regulator	NA	NA	NA	NA
VEI44165.1\|16464_16761_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
VEI44166.1\|16736_16874_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
VEI44167.1\|16861_17131_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
VEI44168.1\|17118_17739_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
VEI44169.1\|17890_18001_-	Uncharacterised protein	NA	NA	NA	NA
VEI44170.1\|17997_18216_-	Uncharacterised protein	NA	NA	NA	NA
VEI44171.1\|18899_19667_+	putative ABC transporter ATP-binding protein	A0A1V0SKJ1	Klosneuvirus	1.6e-19	29.5
VEI44172.1\|19639_20569_+	putative ABC transporter ATP-binding protein	Q6DMX7	Streptococcus_phage	4.2e-19	31.8
VEI44173.1\|20653_20941_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-12	40.0
VEI44174.1\|20950_21451_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.1e-08	44.9
VEI44175.1\|21779_22322_+	glycosyltransferase	NA	NA	NA	NA
VEI44176.1\|22709_22883_-	Fe-S metabolism associated SufE	NA	NA	NA	NA
VEI44177.1\|23070_23166_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.6e-06	76.7
VEI44178.1\|23274_23622_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	9.2e-28	60.4
VEI44179.1\|23913_24018_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	NA	NA	NA	NA
VEI44180.1\|24044_24644_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	9.2e-60	58.5
VEI44181.1\|24691_24853_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.5e-09	58.8
VEI44182.1\|25199_25751_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
VEI44183.1\|25735_25963_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
VEI44184.1\|25981_26149_+	Uncharacterised protein	NA	NA	NA	NA
VEI44185.1\|26408_26642_-\|tRNA	glutamyl-tRNA ligase	NA	NA	NA	NA
VEI44186.1\|26629_27847_-\|tRNA	glutamyl-tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

357435 : 363937

Pseudomonas_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI44856.1\|357435_357651_-	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	4.5e-25	77.1
VEI44857.1\|357673_357820_-	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	6.4e-07	64.9
VEI44858.1\|357813_358242_-	ribonucleotide-diphosphate reductase subunit beta	A0A191ZBY3	Erwinia_phage	2.4e-46	71.4
VEI44859.1\|358669_359182_-	ribonucleotide-diphosphate reductase subunit alpha	A0A2I7S840	Vibrio_phage	1.7e-62	67.6
VEI44860.1\|359178_359628_-	ribonucleotide-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	2.3e-55	68.5
VEI44861.1\|359758_360967_-	ribonucleotide-diphosphate reductase subunit alpha	A0A1W5PTL2	Pseudoalteromonas_phage	5.6e-157	71.4
VEI44862.1\|361429_361852_-	phosphohydrolase	NA	NA	NA	NA
VEI44863.1\|361815_362223_-	phosphohydrolase	NA	NA	NA	NA
VEI44864.1\|362413_362638_-	catalase	NA	NA	NA	NA
VEI44865.1\|362634_363042_-	catalase	A0A2K9L572	Tupanvirus	2.8e-15	46.9
VEI44866.1\|363088_363937_-	catalase	A0A2K9L0T1	Tupanvirus	8.5e-67	46.3

DBSCAN-SWA_3

490822 : 497794

Haemophilus_phage(28.57%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI45151.1\|490822_491104_-	Uncharacterised protein	F6MIM2	Haemophilus_phage	1.4e-29	71.2
VEI45152.1\|491120_491774_-	Adenine-specific DNA methylase	F6MIM2	Haemophilus_phage	1.3e-51	67.8
VEI45153.1\|492170_492296_-	Uncharacterised protein	NA	NA	NA	NA
VEI45154.1\|492310_492451_-	Uncharacterised protein	Q94MX9	Haemophilus_virus	8.8e-06	61.4
VEI45155.1\|492456_492603_-	Uncharacterised protein	NA	NA	NA	NA
VEI45156.1\|492665_493043_-	Uncharacterised protein	NA	NA	NA	NA
VEI45157.1\|493052_493358_-	Uncharacterised protein	A0A1D8KTZ6	Synechococcus_phage	9.9e-10	36.5
VEI45158.1\|493452_493713_+	Uncharacterised protein	NA	NA	NA	NA
VEI45159.1\|493618_493822_-	Uncharacterised protein	NA	NA	NA	NA
VEI45160.1\|493889_494366_-\|tail	Bacteriophage P2-related tail formation protein	Q6QI98	Burkholderia_phage	1.6e-43	57.8
VEI45161.1\|494459_494609_-	Uncharacterised protein	NA	NA	NA	NA
VEI45162.1\|494581_495523_-	Uncharacterized homolog of phage Mu protein gp47	Q6QI99	Burkholderia_phage	1.2e-48	42.1
VEI45163.1\|495563_495752_-	Uncharacterised protein	NA	NA	NA	NA
VEI45164.1\|495961_496300_-\|plate	Phage P2 baseplate assembly protein gpV	NA	NA	NA	NA
VEI45165.1\|496280_496520_-	Uncharacterised protein	NA	NA	NA	NA
VEI45166.1\|496506_496830_-	Phage protein D	NA	NA	NA	NA
VEI45167.1\|497019_497283_-	Protein of uncharacterised function (DUF2644)	NA	NA	NA	NA
VEI45168.1\|497335_497794_-	Predicted lysozyme (DUF847)	A0A0M3LSH2	Mannheimia_phage	1.6e-48	66.4

DBSCAN-SWA_4

501122 : 508177

Pseudomonas_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI45175.1\|501122_501608_+	Uncharacterised protein	A0A0S4L7B4	Pseudomonas_phage	4.2e-10	44.2
VEI45176.1\|501701_501842_+	Uncharacterised protein	NA	NA	NA	NA
VEI45177.1\|501859_502015_+	Uncharacterised protein	NA	NA	NA	NA
VEI45178.1\|502001_502157_+	Uncharacterised protein	NA	NA	NA	NA
VEI45179.1\|502310_503066_+	Uncharacterised protein	Q5ZR04	Pseudomonas_phage	7.2e-17	35.9
VEI45180.1\|503065_503233_+	Uncharacterised protein	NA	NA	NA	NA
VEI45181.1\|503196_504069_+	Uncharacterised protein	Q5ZR04	Pseudomonas_phage	2.7e-44	37.5
VEI45182.1\|504128_504962_+	putative secretion ATPase, PEP-CTERM locus subfamily	Q6QIE1	Burkholderia_phage	4.0e-69	52.5
VEI45183.1\|504922_505114_+	Uncharacterised protein	Q6QIE1	Burkholderia_phage	5.4e-14	74.5
VEI45184.1\|505313_505640_+	Mu-like prophage host-nuclease inhibitor protein Gam	NA	NA	NA	NA
VEI45185.1\|505704_505836_+	Mu-like prophage host-nuclease inhibitor protein Gam	NA	NA	NA	NA
VEI45186.1\|505832_505937_+	Uncharacterised protein	NA	NA	NA	NA
VEI45187.1\|505878_506091_+	Uncharacterised protein	NA	NA	NA	NA
VEI45188.1\|506069_506201_+	Uncharacterised protein	NA	NA	NA	NA
VEI45189.1\|506504_506606_+	Uncharacterised protein	NA	NA	NA	NA
VEI45190.1\|506652_507123_+	Uncharacterised protein	A0A0M3LPP6	Mannheimia_phage	1.8e-05	26.8
VEI45191.1\|507264_507417_+	Uncharacterised protein	NA	NA	NA	NA
VEI45192.1\|507610_507865_+	Mu-like prophage protein gp16	NA	NA	NA	NA
VEI45193.1\|507866_508001_+	Uncharacterised protein	NA	NA	NA	NA
VEI45194.1\|507997_508177_+	Uncharacterized conserved protein	Q6QIE8	Burkholderia_phage	1.3e-09	45.6

DBSCAN-SWA_5

648500 : 655000

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI45493.1\|648500_648890_-	putative phosphate permease	E5ESL8	Bathycoccus_sp._RCC1105_virus	3.7e-17	50.0
VEI45494.1\|648906_649371_-	phosphate transport regulator	NA	NA	NA	NA
VEI45495.1\|649406_649577_-	phosphate transport regulator	NA	NA	NA	NA
VEI45496.1\|649748_650372_-	iron(III) ABC transporter ATP-binding protein	NA	NA	NA	NA
VEI45497.1\|650722_651124_-	iron ABC transporter permease	NA	NA	NA	NA
VEI45498.1\|651159_651387_-	iron ABC transporter permease	NA	NA	NA	NA
VEI45499.1\|651444_651849_-	inner membrane transport protein	A0A2H4IY97	uncultured_Caudovirales_phage	7.4e-21	48.6
VEI45500.1\|651868_652333_-	inner membrane transport protein	NA	NA	NA	NA
VEI45501.1\|652417_652570_-	ABC transport system periplasmic protein	NA	NA	NA	NA
VEI45502.1\|652631_652790_-	ABC transport system periplasmic protein	NA	NA	NA	NA
VEI45503.1\|652759_653278_-	ABC transport system periplasmic protein	NA	NA	NA	NA
VEI45504.1\|653542_653749_+	replicative DNA helicase	O80281	Escherichia_phage	8.2e-08	61.4
VEI45505.1\|653742_654240_+	replicative DNA helicase	O80281	Escherichia_phage	7.0e-37	54.9
VEI45506.1\|654365_654536_+	replicative DNA helicase	O80281	Escherichia_phage	1.8e-08	61.7
VEI45507.1\|654568_655000_+	replicative DNA helicase	O80281	Escherichia_phage	4.6e-61	82.5

DBSCAN-SWA_6

700796 : 725041

Escherichia_phage(80.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI45601.1\|700796_701051_-\|tRNA	glutaminyl-tRNA synthetase	A0A222YZ70	Escherichia_phage	2.9e-23	61.4
VEI45602.1\|701118_701457_-\|tRNA	glutaminyl-tRNA synthetase	A0A222YZ70	Escherichia_phage	1.2e-40	74.5
VEI45603.1\|701453_701570_-\|tRNA	glutaminyl-tRNA synthetase	A0A222YZ70	Escherichia_phage	2.7e-08	78.8
VEI45604.1\|701614_701848_-\|tRNA	glutaminyl-tRNA synthetase	A0A222YZ70	Escherichia_phage	2.7e-31	84.3
VEI45605.1\|702556_702727_-	elongation factor P	NA	NA	NA	NA
VEI45606.1\|702989_703127_-	elongation factor P	NA	NA	NA	NA
VEI45607.1\|703537_703684_+	Uncharacterised protein	NA	NA	NA	NA
VEI45608.1\|703638_703821_+	Uncharacterised protein	NA	NA	NA	NA
VEI45609.1\|704334_704694_+	lysine 2,3-aminomutase YodO family protein	NA	NA	NA	NA
VEI45610.1\|704690_704903_+	lysine 2,3-aminomutase YodO family protein	NA	NA	NA	NA
VEI45611.1\|705005_706271_-\|tRNA	asparaginyl-tRNA synthetase	A0A1V0SDB6	Indivirus	6.1e-77	37.6
VEI45612.1\|706287_706407_-\|tRNA	asparaginyl-tRNA synthetase	NA	NA	NA	NA
VEI45613.1\|706933_707062_+	exonuclease I	NA	NA	NA	NA
VEI45614.1\|707061_707385_+	exonuclease I	NA	NA	NA	NA
VEI45615.1\|707330_707579_+	exonuclease I	NA	NA	NA	NA
VEI45616.1\|707575_707734_+	exonuclease I	NA	NA	NA	NA
VEI45617.1\|707857_708055_+	exonuclease I	NA	NA	NA	NA
VEI45618.1\|708056_708470_+	exonuclease I	NA	NA	NA	NA
VEI45619.1\|708587_708770_+	Mug protein	NA	NA	NA	NA
VEI45620.1\|709073_709583_+	metal-dependent phosphoesterase	NA	NA	NA	NA
VEI45621.1\|709567_709891_+	metal-dependent phosphoesterase	NA	NA	NA	NA
VEI45622.1\|709929_710082_-	high-affinity Fe2+/Pb2+ permease	NA	NA	NA	NA
VEI45623.1\|710078_710402_-	high-affinity Fe2+/Pb2+ permease	NA	NA	NA	NA
VEI45624.1\|710398_710548_-	high-affinity Fe2+/Pb2+ permease	NA	NA	NA	NA
VEI45625.1\|710558_710849_-	iron dependent peroxidase	NA	NA	NA	NA
VEI45626.1\|710848_711748_-	iron dependent peroxidase	NA	NA	NA	NA
VEI45627.1\|711988_712225_-	lipoprotein precursor	NA	NA	NA	NA
VEI45628.1\|712173_712548_-	lipoprotein precursor	NA	NA	NA	NA
VEI45629.1\|712744_713224_+	excinuclease ABC subunit B	NA	NA	NA	NA
VEI45630.1\|713168_713501_+	excinuclease ABC subunit B	NA	NA	NA	NA
VEI45631.1\|713517_714135_+	excinuclease ABC subunit B	NA	NA	NA	NA
VEI45632.1\|714119_714527_+	excinuclease ABC subunit B	NA	NA	NA	NA
VEI45633.1\|714862_715105_+	Uncharacterised protein	NA	NA	NA	NA
VEI45634.1\|715343_715958_+	Uncharacterised protein	NA	NA	NA	NA
VEI45635.1\|715954_716284_+	Uncharacterised protein	NA	NA	NA	NA
VEI45636.1\|716267_716447_+	Uncharacterised protein	NA	NA	NA	NA
VEI45637.1\|716422_716563_+	Uncharacterised protein	NA	NA	NA	NA
VEI45638.1\|716981_717212_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
VEI45639.1\|717219_717366_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
VEI45640.1\|717410_718265_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
VEI45641.1\|718442_719639_-	aromatic amino acid aminotransferase	NA	NA	NA	NA
VEI45642.1\|719768_720545_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
VEI45643.1\|720580_720856_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
VEI45644.1\|720969_721890_-	L-asparaginase	NA	NA	NA	NA
VEI45645.1\|721945_722440_-	phosphoribosylaminoimidazole carboxylasecatalytic subunit	NA	NA	NA	NA
VEI45646.1\|722592_722925_+	stringent starvation protein A	NA	NA	NA	NA
VEI45647.1\|722924_723305_+	stringent starvation protein A	NA	NA	NA	NA
VEI45648.1\|723304_723559_+\|protease	ClpXP protease specificity-enhancing factor	NA	NA	NA	NA
VEI45649.1\|723522_723720_+\|protease	ClpXP protease specificity-enhancing factor	NA	NA	NA	NA
VEI45650.1\|723899_724100_+\|transposase	transposase and inactivated derivative	NA	NA	NA	NA
VEI45651.1\|724402_724633_+\|transposase	putative transposase-like protein	NA	NA	NA	NA
VEI45652.1\|724632_724776_+\|transposase	transposase insK for insertion sequence element IS150	NA	NA	NA	NA
VEI45653.1\|724882_725041_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_7

760833 : 790001

Mycobacterium_phage(20.0%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI45719.1\|760833_761058_+	thymidine kinase	A0A1L2CUP7	Pectobacterium_phage	2.0e-12	69.4
VEI45720.1\|761132_761273_+	thymidine kinase	A0A2I6PFM4	Proteus_phage	1.2e-10	67.5
VEI45721.1\|761269_761383_+	thymidine kinase	NA	NA	NA	NA
VEI45722.1\|761823_762195_-	M22-like peptidase	NA	NA	NA	NA
VEI45723.1\|762220_762466_-	M22-like peptidase	NA	NA	NA	NA
VEI45724.1\|762617_763004_-	phospho-2-dehydro-3-deoxyheptonate aldolase	A0A0B5IW14	Pandoravirus	2.4e-16	43.4
VEI45725.1\|763095_763524_-	phospho-2-dehydro-3-deoxyheptonate aldolase	A0A0B6VT43	Edwardsiella_phage	4.0e-41	59.6
VEI45726.1\|763779_764037_-\|protease	Predicted metalloprotease	NA	NA	NA	NA
VEI45727.1\|763999_764227_-\|protease	Predicted metalloprotease	NA	NA	NA	NA
VEI45728.1\|764360_764669_-\|protease	Predicted metalloprotease	NA	NA	NA	NA
VEI45729.1\|764853_765654_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.3e-32	46.5
VEI45730.1\|765632_766079_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.8e-28	47.6
VEI45731.1\|766111_766528_-	DNA translocase FtsK	NA	NA	NA	NA
VEI45732.1\|766533_766959_-	DNA translocase FtsK	NA	NA	NA	NA
VEI45733.1\|767015_767288_-	DNA translocase FtsK	NA	NA	NA	NA
VEI45734.1\|767290_767470_-	DNA translocase FtsK	NA	NA	NA	NA
VEI45735.1\|767546_767702_-	DNA translocase FtsK	NA	NA	NA	NA
VEI45736.1\|767769_768090_-	leucine-responsive transcriptional regulator	NA	NA	NA	NA
VEI45737.1\|768395_769031_-	ribonuclease D	NA	NA	NA	NA
VEI45738.1\|769000_769507_-	ribonuclease D	NA	NA	NA	NA
VEI45739.1\|769749_769968_+	transcriptional repressor of carbohydrate metabolism	NA	NA	NA	NA
VEI45740.1\|770093_770429_+	transcriptional repressor of carbohydrate metabolism	NA	NA	NA	NA
VEI45741.1\|770425_770608_+	transcriptional repressor of carbohydrate metabolism	NA	NA	NA	NA
VEI45742.1\|770683_770887_+	transcriptional repressor of carbohydrate metabolism	NA	NA	NA	NA
VEI45743.1\|770950_771268_+	dithiobiotin synthetase	NA	NA	NA	NA
VEI45744.1\|771309_771696_+	dithiobiotin synthetase	NA	NA	NA	NA
VEI45745.1\|771983_772460_-	lipoprotein	A0A217EQL1	Bacillus_phage	4.8e-11	43.4
VEI45746.1\|772704_772818_-	integration host factor subunit alpha	NA	NA	NA	NA
VEI45747.1\|772834_773266_-\|tRNA	phenylalanyl-tRNA synthetase subunit beta	NA	NA	NA	NA
VEI45748.1\|773259_773391_-\|tRNA	phenylalanyl-tRNA synthetase subunit beta	NA	NA	NA	NA
VEI45749.1\|773384_775220_-\|tRNA	phenylalanyl-tRNA synthetase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.1e-05	25.5
VEI45750.1\|775317_775626_-\|tRNA	phenylalanyl-tRNA synthetase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.0e-17	48.2
VEI45751.1\|775631_775760_-\|tRNA	phenylalanyl-tRNA synthetase subunit alpha	NA	NA	NA	NA
VEI45752.1\|775930_776302_-\|tRNA	phenylalanyl-tRNA synthetase subunit alpha	NA	NA	NA	NA
VEI45753.1\|776912_777221_+	putative NAD(P)H nitroreductase	NA	NA	NA	NA
VEI45754.1\|777337_778027_-	proton glutamate symport protein	NA	NA	NA	NA
VEI45755.1\|778089_778302_-	proton glutamate symport protein	NA	NA	NA	NA
VEI45756.1\|778337_778550_-	proton glutamate symport protein	NA	NA	NA	NA
VEI45757.1\|778754_778928_-	Zn-ribbon-containing, possibly nucleic-acid-binding protein	NA	NA	NA	NA
VEI45758.1\|778960_779074_-	Zn-ribbon-containing, possibly nucleic-acid-binding protein	NA	NA	NA	NA
VEI45759.1\|779269_779521_-	Zn-ribbon-containing, possibly nucleic-acid-binding protein	NA	NA	NA	NA
VEI45760.1\|779764_780106_-	cation-efflux pump FieF	NA	NA	NA	NA
VEI45761.1\|780499_780883_-	Uncharacterised protein	NA	NA	NA	NA
VEI45762.1\|780879_781125_-	Uncharacterised protein	NA	NA	NA	NA
VEI45763.1\|781087_781615_-	Protein of uncharacterised function (DUF328)	NA	NA	NA	NA
VEI45764.1\|781760_782279_-	30S ribosomal protein S9	NA	NA	NA	NA
VEI45765.1\|782295_782724_-	50S ribosomal protein L13	NA	NA	NA	NA
VEI45766.1\|783097_783277_+	Protein of uncharacterised function (DUF1043)	NA	NA	NA	NA
VEI45767.1\|783261_783417_+	Protein of uncharacterised function (DUF1043)	NA	NA	NA	NA
VEI45768.1\|783476_783956_-	PII uridylyl-transferase	NA	NA	NA	NA
VEI45769.1\|784067_784385_-	PII uridylyl-transferase	NA	NA	NA	NA
VEI45770.1\|784384_784678_-	PII uridylyl-transferase	NA	NA	NA	NA
VEI45771.1\|784674_784893_-	PII uridylyl-transferase	NA	NA	NA	NA
VEI45772.1\|784969_786025_-	PII uridylyl-transferase	NA	NA	NA	NA
VEI45773.1\|786163_787381_-	tyrosine-specific transport protein 2	NA	NA	NA	NA
VEI45774.1\|787478_788291_-	tyrosine-specific transporter	NA	NA	NA	NA
VEI45775.1\|788265_788430_-	Uncharacterised protein	NA	NA	NA	NA
VEI45776.1\|788429_788690_-	tyrosine-specific transporter	NA	NA	NA	NA
VEI45777.1\|788920_789139_-\|protease	cell division protease FtsH-like protein	NA	NA	NA	NA
VEI45778.1\|789223_789328_-\|protease	cell division protease FtsH-like protein	NA	NA	NA	NA
VEI45779.1\|789302_790001_-\|protease	cell division protease FtsH-like protein	E4WLN5	Ostreococcus_tauri_virus	1.8e-43	46.2

DBSCAN-SWA_8

902786 : 912648

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI46015.1\|902786_903689_-	ribosomal protein S6 modification protein	A0A1D7SR78	Cyanophage	1.1e-32	35.1
VEI46016.1\|903696_903828_-	nitroreductase A	NA	NA	NA	NA
VEI46017.1\|903824_904115_-	nitroreductase A	NA	NA	NA	NA
VEI46018.1\|904126_904414_-	nitroreductase A	NA	NA	NA	NA
VEI46019.1\|904487_904754_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
VEI46020.1\|904773_905106_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
VEI46021.1\|905105_905288_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
VEI46022.1\|905274_905439_-	Trp operon repressor	NA	NA	NA	NA
VEI46023.1\|905407_905581_-	Trp operon repressor	NA	NA	NA	NA
VEI46024.1\|905641_906100_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
VEI46025.1\|906448_906871_-	DNA polymerase I	J9PVA4	Bacillus_phage	3.7e-07	36.1
VEI46026.1\|906825_907398_-	DNA polymerase I	A0A142F1Q9	Bacillus_phage	1.0e-31	41.4
VEI46027.1\|907382_908039_-	DNA polymerase I	A0A218MKQ4	uncultured_virus	1.8e-16	33.5
VEI46028.1\|908041_908248_-	DNA polymerase I	NA	NA	NA	NA
VEI46029.1\|908491_908731_-	DNA polymerase I	NA	NA	NA	NA
VEI46030.1\|908736_909315_-	DNA polymerase I	A0A068EMT4	Bacillus_phage	4.8e-21	34.5
VEI46031.1\|909433_910855_-	excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	2.3e-173	63.7
VEI46032.1\|910993_911122_-	excinuclease ABC subunit A	NA	NA	NA	NA
VEI46033.1\|911240_911549_-	excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	8.2e-20	48.3
VEI46034.1\|911748_912255_-	excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	1.5e-55	65.4
VEI46035.1\|912402_912648_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	5.7e-24	66.2

DBSCAN-SWA_9

961483 : 971056

Bacillus_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI46131.1\|961483_962074_+	DNA-binding transcriptional repressor PurR	C6ZCU4	Enterobacteria_phage	6.0e-19	37.2
VEI46132.1\|962177_962348_+	DedA family integral membrane protein	NA	NA	NA	NA
VEI46133.1\|962359_962638_+	DedA family integral membrane protein	NA	NA	NA	NA
VEI46134.1\|962803_963094_-	DNA gyrase subunit B	G3M9Z3	Bacillus_virus	2.0e-15	62.3
VEI46135.1\|963135_963339_-	DNA gyrase subunit B	NA	NA	NA	NA
VEI46136.1\|963422_963560_-	DNA gyrase subunit B	NA	NA	NA	NA
VEI46137.1\|963529_963832_-	DNA gyrase subunit B	A0A1G5SA57	Enterococcus_phage	6.4e-17	43.0
VEI46138.1\|963943_964312_-	DNA gyrase subunit B	G4KKP9	Yersinia_phage	1.3e-08	40.0
VEI46139.1\|964305_964716_-	DNA gyrase subunit B	NA	NA	NA	NA
VEI46140.1\|964769_965096_-	DNA gyrase subunit B	A0A172JHT4	Bacillus_phage	7.3e-19	50.5
VEI46141.1\|965077_965224_-	DNA gyrase subunit B	A0A127AW23	Bacillus_phage	7.8e-05	70.0
VEI46142.1\|965657_965924_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
VEI46143.1\|965947_966226_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
VEI46144.1\|966334_966835_-	glycerol-3-phosphate regulon repressor	A0A077SK06	Escherichia_phage	2.8e-09	28.7
VEI46145.1\|966857_967094_-	glycerol-3-phosphate regulon repressor	NA	NA	NA	NA
VEI46146.1\|967161_968100_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.6e-77	50.2
VEI46147.1\|968326_968419_-	adenylosuccinate lyase	NA	NA	NA	NA
VEI46148.1\|968415_968568_-	adenylosuccinate lyase	NA	NA	NA	NA
VEI46149.1\|968582_968738_-	lysogenization regulator	NA	NA	NA	NA
VEI46150.1\|968820_969213_-	lysogenization regulator	NA	NA	NA	NA
VEI46151.1\|969347_970157_-	glycosyltransferase	NA	NA	NA	NA
VEI46152.1\|970165_971056_-	cysteine/glutathione ABC transporter membrane /ATP-binding protein	A0A076FI99	Aureococcus_anophage	6.2e-20	31.6

DBSCAN-SWA_10

1029689 : 1034558

Staphylococcus_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI46269.1\|1029689_1030571_+	aminopeptidase B	Q6GYZ8	Mycoplasma_phage	8.1e-28	36.0
VEI46270.1\|1030579_1030690_+	phosphosugar isomerase	NA	NA	NA	NA
VEI46271.1\|1030707_1030803_+	Uncharacterised protein	NA	NA	NA	NA
VEI46272.1\|1030931_1031414_+	phosphosugar isomerase	A0A2P0VNK5	Tetraselmis_virus	2.0e-17	37.6
VEI46273.1\|1031558_1031972_-	Uncharacterised protein	NA	NA	NA	NA
VEI46274.1\|1032129_1032357_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.3e-14	63.8
VEI46275.1\|1032326_1032632_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.0e-14	63.3
VEI46276.1\|1032773_1032914_-	riboflavin biosynthesis protein ribA	NA	NA	NA	NA
VEI46277.1\|1032952_1033216_-	riboflavin biosynthesis protein ribA	A0A2H4PQS2	Staphylococcus_phage	5.5e-09	45.7
VEI46278.1\|1033167_1033296_-	riboflavin biosynthesis protein ribA	NA	NA	NA	NA
VEI46279.1\|1033304_1033475_-	riboflavin biosynthesis protein ribA	A0A2H4PQS2	Staphylococcus_phage	4.1e-13	67.9
VEI46280.1\|1033587_1033707_-	riboflavin biosynthesis protein ribA	NA	NA	NA	NA
VEI46281.1\|1033712_1033856_-	riboflavin biosynthesis protein ribA	NA	NA	NA	NA
VEI46282.1\|1033954_1034302_-	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	2.6e-14	38.8
VEI46283.1\|1034342_1034558_-	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	1.6e-09	44.1

DBSCAN-SWA_11

1152135 : 1157502

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI46538.1\|1152135_1152789_-	putrescine/spermidine ABC transporter ATPase	Q6GZ03	Mycoplasma_phage	1.4e-32	41.9
VEI46539.1\|1152788_1153250_-	putrescine/spermidine ABC transporter ATPase	G3M9Y6	Bacillus_virus	6.7e-10	29.5
VEI46540.1\|1153684_1154089_+	ATP-dependent DNA helicase	A7KV33	Bacillus_phage	3.7e-20	42.5
VEI46541.1\|1154133_1155717_+	ATP-dependent DNA helicase	A7KV33	Bacillus_phage	5.1e-81	38.5
VEI46542.1\|1155791_1156004_-	TatD family deoxyribonuclease	NA	NA	NA	NA
VEI46543.1\|1156283_1156532_-	Mg-dependent deoxyribonuclease	NA	NA	NA	NA
VEI46544.1\|1156624_1156933_-	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	9.3e-32	66.7
VEI46545.1\|1157028_1157502_-	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	5.8e-41	52.1

DBSCAN-SWA_12

1164804 : 1177816

Escherichia_phage(20.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI46563.1\|1164804_1165329_+\|protease	ATP-dependent Clp protease subunit B	NA	NA	NA	NA
VEI46564.1\|1165639_1166344_+\|protease	ATP-dependent Clp protease subunit B	A0A1C3S747	Escherichia_phage	9.9e-29	52.9
VEI46565.1\|1166283_1166451_+\|protease	ATP-dependent Clp protease subunit B	NA	NA	NA	NA
VEI46566.1\|1166479_1166893_+\|protease	ATP-dependent Clp protease subunit B	A0A2L0V0F4	Agrobacterium_phage	9.0e-30	50.0
VEI46567.1\|1166850_1167369_+\|protease	ATP-dependent Clp protease subunit B	A0A1C3S747	Escherichia_phage	7.3e-21	37.8
VEI46568.1\|1167492_1168320_-	aspartate ammonia-lyase	NA	NA	NA	NA
VEI46569.1\|1168322_1168727_-	aspartate ammonia-lyase	NA	NA	NA	NA
VEI46570.1\|1168720_1168873_-	aspartate ammonia-lyase	NA	NA	NA	NA
VEI46571.1\|1168992_1169295_-	Protein of uncharacterised function (DUF1294)	NA	NA	NA	NA
VEI46572.1\|1169367_1169529_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	NA	NA	NA
VEI46573.1\|1169611_1169809_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	NA	NA	NA
VEI46574.1\|1169880_1170402_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.2e-40	53.7
VEI46575.1\|1170777_1171440_+	N-acetyl-beta-hexosaminidase	NA	NA	NA	NA
VEI46576.1\|1171982_1172144_+	queuosine biosynthesis protein QueC	M1PKZ7	Cellulophaga_phage	5.2e-10	60.0
VEI46577.1\|1172185_1172605_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.7e-31	47.8
VEI46578.1\|1172670_1172835_+	6-pyruvoyl-tetrahydropterin synthase	A0A1U9WRB3	Streptococcus_virus	4.5e-09	52.1
VEI46579.1\|1172840_1173059_+	6-pyruvoyl-tetrahydropterin synthase	NA	NA	NA	NA
VEI46580.1\|1173082_1173715_+	organic radical activating enzyme	A0A1V0DYC7	Dinoroseobacter_phage	4.2e-10	29.5
VEI46581.1\|1173762_1174020_-	glycerol-3-phosphate transporter	NA	NA	NA	NA
VEI46582.1\|1174619_1175495_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	1.8e-48	40.4
VEI46583.1\|1175461_1175698_-	leucyl aminopeptidase	NA	NA	NA	NA
VEI46584.1\|1175758_1175959_-	leucyl aminopeptidase	NA	NA	NA	NA
VEI46585.1\|1176373_1176883_+	Uncharacterised protein	NA	NA	NA	NA
VEI46586.1\|1176998_1177154_+	Uncharacterised protein	NA	NA	NA	NA
VEI46587.1\|1177223_1177484_-	insertion element IS476 39.2 kDa protein	A0A2I6AZV9	Macacine_betaherpesvirus	2.8e-21	54.8
VEI46588.1\|1177630_1177816_-\|transposase	transposase insK for insertion sequence element IS150	NA	NA	NA	NA

DBSCAN-SWA_13

1197819 : 1203975

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI46625.1\|1197819_1198425_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.6e-51	56.5
VEI46626.1\|1198550_1198970_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.2e-31	61.7
VEI46627.1\|1199231_1199390_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEI46628.1\|1199929_1200121_+	Uncharacterised protein	NA	NA	NA	NA
VEI46629.1\|1200181_1200283_-	ATP-dependent DNA helicase	NA	NA	NA	NA
VEI46630.1\|1200287_1200635_-	ATP-dependent DNA helicase	NA	NA	NA	NA
VEI46631.1\|1200592_1200772_-	ATP-dependent DNA helicase	NA	NA	NA	NA
VEI46632.1\|1200977_1201208_-	ATP-dependent DNA helicase	A0A1V0SBK0	Catovirus	7.0e-16	52.9
VEI46633.1\|1201207_1201327_-	ATP-dependent DNA helicase	NA	NA	NA	NA
VEI46634.1\|1201499_1201757_-	ATP-dependent DNA helicase	NA	NA	NA	NA
VEI46635.1\|1201756_1201972_-	ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	6.1e-14	60.7
VEI46636.1\|1202055_1202331_-	frataxin-like protein	NA	NA	NA	NA
VEI46637.1\|1202540_1202651_-	Uncharacterised protein	NA	NA	NA	NA
VEI46638.1\|1202995_1203286_-	putative DNA-binding/iron metalloprotein/AP endonuclease	A0A0R6PI74	Moraxella_phage	5.3e-21	57.0
VEI46639.1\|1203450_1203975_-	putative DNA-binding/iron metalloprotein/AP endonuclease	A0A0R6PI74	Moraxella_phage	1.6e-63	65.4

DBSCAN-SWA_14

1387036 : 1418230

Burkholderia_phage(26.67%)

tail,plate,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI46993.1\|1387036_1387510_-	putative phage repressor	A0A0M3LP76	Mannheimia_phage	9.0e-18	38.4
VEI46994.1\|1387706_1387808_+	Predicted transcriptional regulator	NA	NA	NA	NA
VEI46995.1\|1387980_1388430_+	Mu DNA-binding domain	NA	NA	NA	NA
VEI46996.1\|1388492_1388891_+	Mu DNA binding, I gamma subdomain	A0A2I7S9A8	Vibrio_phage	6.8e-35	57.5
VEI46997.1\|1388890_1389067_+\|transposase	Bacteriophage Mu transposase	A0A2I7S9A8	Vibrio_phage	3.7e-17	79.2
VEI46998.1\|1389048_1389390_+\|transposase	Bacteriophage Mu transposase	A0A0C4UR24	Shigella_phage	5.0e-26	55.0
VEI46999.1\|1389463_1389727_+\|transposase	Mu transposase, C-terminal	A0A2I7S9A8	Vibrio_phage	4.2e-09	48.3
VEI47000.1\|1389704_1389914_+	Uncharacterised protein	NA	NA	NA	NA
VEI47001.1\|1389972_1390275_+	Uncharacterised protein	NA	NA	NA	NA
VEI47002.1\|1390366_1390690_+	Uncharacterised protein	A0A2I7S9C3	Vibrio_phage	1.2e-26	61.3
VEI47003.1\|1390733_1390883_+	Mu B transposition protein, C terminal	NA	NA	NA	NA
VEI47004.1\|1390885_1391197_+	Uncharacterised protein	NA	NA	NA	NA
VEI47005.1\|1391447_1391726_+	Uncharacterised protein	NA	NA	NA	NA
VEI47006.1\|1391706_1392234_+	Mu-like prophage host-nuclease inhibitor protein Gam	L7P7I4	Pseudomonas_phage	1.5e-29	59.0
VEI47007.1\|1392233_1392353_+	Uncharacterised protein	NA	NA	NA	NA
VEI47008.1\|1392622_1393036_+	Uncharacterised protein	NA	NA	NA	NA
VEI47009.1\|1393275_1393539_+	Uncharacterised protein	NA	NA	NA	NA
VEI47010.1\|1393496_1393736_+	Uncharacterised protein	NA	NA	NA	NA
VEI47011.1\|1393735_1393927_+	Uncharacterised protein	NA	NA	NA	NA
VEI47012.1\|1394044_1394353_+	Uncharacterised protein	NA	NA	NA	NA
VEI47013.1\|1394936_1395311_+	Uncharacterised protein	F6MIJ5	Haemophilus_phage	7.1e-26	56.9
VEI47014.1\|1395653_1395866_+	Uncharacterised protein	NA	NA	NA	NA
VEI47015.1\|1396810_1396984_+	Uncharacterised protein	F6MIJ9	Haemophilus_phage	6.0e-12	71.4
VEI47016.1\|1396995_1397181_+	Uncharacterised protein	F6MIJ9	Haemophilus_phage	3.8e-12	71.1
VEI47017.1\|1397355_1397463_+	Uncharacterised protein	NA	NA	NA	NA
VEI47018.1\|1397605_1398103_+	Protein of uncharacterised function (DUF2644)	F6MIK0	Haemophilus_phage	1.2e-15	83.0
VEI47019.1\|1398274_1398493_+	Uncharacterised protein	NA	NA	NA	NA
VEI47020.1\|1398468_1398825_+	Uncharacterised protein	Q5ZQY7	Pseudomonas_phage	8.8e-26	53.9
VEI47021.1\|1398828_1399119_+	Protein of uncharacterised function (DUF3486)	NA	NA	NA	NA
VEI47022.1\|1399158_1399377_+	Protein of uncharacterised function (DUF3486)	NA	NA	NA	NA
VEI47023.1\|1399373_1399676_+	Uncharacterised protein	NA	NA	NA	NA
VEI47024.1\|1400005_1400308_+	Mu-like prophage FluMu protein gp28	Q6QIC1	Burkholderia_phage	6.3e-25	54.0
VEI47025.1\|1400277_1401396_+	Mu-like prophage protein gp29	Q6QIC0	Burkholderia_phage	2.2e-38	47.3
VEI47026.1\|1401413_1401968_+	Mu-like prophage protein gp29	A4JWJ5	Burkholderia_virus	1.8e-46	60.1
VEI47027.1\|1402095_1402347_+	Mu-like prophage protein gp29	NA	NA	NA	NA
VEI47028.1\|1402440_1402938_+\|head	phage head morphogenesis protein, SPP1 gp7 family	J9STS2	Pseudomonas_phage	6.3e-38	47.6
VEI47029.1\|1402934_1403231_+	Uncharacterised protein	NA	NA	NA	NA
VEI47030.1\|1403315_1403606_+	Uncharacterised protein	NA	NA	NA	NA
VEI47031.1\|1403729_1403987_+	Uncharacterised protein	A0A1W6DXZ5	Salmonella_phage	2.4e-17	50.0
VEI47032.1\|1404051_1404273_+	Mu-like prophage protein gpG	NA	NA	NA	NA
VEI47033.1\|1404776_1405040_+	Uncharacterised protein	G8GWE4	Rhodobacter_phage	1.2e-08	42.4
VEI47034.1\|1405045_1405420_+	Uncharacterised protein	Q6QIB7	Burkholderia_phage	1.2e-09	45.5
VEI47035.1\|1405461_1405599_+	Uncharacterised protein	NA	NA	NA	NA
VEI47036.1\|1405613_1405787_+	Uncharacterised protein	A4JWJ9	Burkholderia_virus	4.0e-08	52.6
VEI47037.1\|1405818_1406076_+	Uncharacterised protein	A4JWK0	Burkholderia_virus	8.1e-13	47.8
VEI47038.1\|1406155_1406332_+	Uncharacterised protein	NA	NA	NA	NA
VEI47039.1\|1406310_1406760_+	Uncharacterised protein	NA	NA	NA	NA
VEI47040.1\|1406898_1407081_+	Uncharacterised protein	NA	NA	NA	NA
VEI47041.1\|1407084_1407519_+	Mu-like prophage protein gp36	A4JWK2	Burkholderia_virus	7.2e-22	44.1
VEI47042.1\|1407519_1407846_+	Gp37 protein	NA	NA	NA	NA
VEI47043.1\|1407842_1408121_+	Gp37 protein	NA	NA	NA	NA
VEI47044.1\|1408134_1408599_+	Uncharacterised protein	A4JWK5	Burkholderia_virus	1.0e-18	42.9
VEI47045.1\|1408649_1409390_+\|tail	Phage tail sheath protein	A4JWK5	Burkholderia_virus	4.7e-53	44.8
VEI47046.1\|1409399_1409582_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	5.5e-08	52.2
VEI47047.1\|1409545_1409842_+\|tail	phage major tail tube protein	NA	NA	NA	NA
VEI47048.1\|1409998_1410205_+	Uncharacterised protein	NA	NA	NA	NA
VEI47049.1\|1410177_1410309_+	Uncharacterised protein	NA	NA	NA	NA
VEI47050.1\|1410435_1410714_-	Uncharacterised protein	NA	NA	NA	NA
VEI47051.1\|1410775_1411285_+	Uncharacterised protein	NA	NA	NA	NA
VEI47052.1\|1411281_1411386_+	Uncharacterised protein	NA	NA	NA	NA
VEI47053.1\|1411420_1411621_+	Uncharacterised protein	NA	NA	NA	NA
VEI47054.1\|1411893_1412091_+	Uncharacterised protein	NA	NA	NA	NA
VEI47055.1\|1412051_1412426_+\|tail	phage tail tape measure protein, TP901 family, core region	NA	NA	NA	NA
VEI47056.1\|1412614_1413340_+\|tail	putative tail protein	A0A077K8S2	Ralstonia_phage	9.0e-17	39.8
VEI47057.1\|1413562_1413844_+	Phage P2 GpU	NA	NA	NA	NA
VEI47058.1\|1414012_1414309_+	Uncharacterised protein	NA	NA	NA	NA
VEI47059.1\|1414295_1414451_+	Phage Tail Protein X	Q6QIA3	Burkholderia_phage	2.6e-06	57.1
VEI47060.1\|1414916_1415507_+	Phage protein D	Q6QIA2	Burkholderia_phage	2.8e-24	39.7
VEI47061.1\|1415569_1416142_+\|plate	Phage P2 baseplate assembly protein gpV	NA	NA	NA	NA
VEI47062.1\|1416184_1416571_+	Gene 25-like lysozyme	NA	NA	NA	NA
VEI47063.1\|1416592_1416943_+	Uncharacterized homolog of phage Mu protein gp47	Q6QI99	Burkholderia_phage	1.4e-12	41.8
VEI47064.1\|1416947_1417238_+\|plate	Baseplate J-like protein	NA	NA	NA	NA
VEI47065.1\|1417234_1417516_+\|plate	Baseplate J-like protein	NA	NA	NA	NA
VEI47066.1\|1417516_1418230_+\|tail	Bacteriophage P2-related tail formation protein	Q6QI98	Burkholderia_phage	6.1e-42	46.6

DBSCAN-SWA_15

1710776 : 1730072

Klosneuvirus(100.0%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI47650.1\|1710776_1711529_+\|protease	Zn-dependent protease with chaperone function	NA	NA	NA	NA
VEI47651.1\|1712062_1712287_+	dinucleoside polyphosphate hydrolase	NA	NA	NA	NA
VEI47652.1\|1712677_1713106_+	permease	NA	NA	NA	NA
VEI47653.1\|1713123_1713426_+	permease	NA	NA	NA	NA
VEI47654.1\|1713630_1714146_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
VEI47655.1\|1714127_1714421_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
VEI47656.1\|1714523_1714838_+	Uncharacterised protein	NA	NA	NA	NA
VEI47657.1\|1715188_1715389_+	phosphoglycolate phosphatase	NA	NA	NA	NA
VEI47658.1\|1715355_1715520_+	phosphoglycolate phosphatase	NA	NA	NA	NA
VEI47659.1\|1715744_1716314_+\|tRNA	tryptophanyl-tRNA synthetase	NA	NA	NA	NA
VEI47660.1\|1716351_1716663_+\|tRNA	tryptophanyl-tRNA synthetase	NA	NA	NA	NA
VEI47661.1\|1716924_1717416_+	outer membrane autotransporter barrel domain-containing protein	NA	NA	NA	NA
VEI47662.1\|1717415_1718150_+	outer membrane autotransporter barrel domain-containing protein	NA	NA	NA	NA
VEI47663.1\|1718233_1718764_+	outer membrane autotransporter barrel domain-containing protein	NA	NA	NA	NA
VEI47664.1\|1718955_1719402_+	outer membrane autotransporter barrel domain-containing protein	NA	NA	NA	NA
VEI47665.1\|1719500_1720370_+	outer membrane autotransporter barrel domain-containing protein	NA	NA	NA	NA
VEI47666.1\|1720979_1721651_+\|protease	lon protease	NA	NA	NA	NA
VEI47667.1\|1721671_1722184_+\|protease	lon protease	NA	NA	NA	NA
VEI47668.1\|1722258_1722651_+\|protease	lon protease	NA	NA	NA	NA
VEI47669.1\|1722723_1722912_+	3-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
VEI47670.1\|1722965_1723253_+	3-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
VEI47671.1\|1723340_1723571_+	Uncharacterised protein	NA	NA	NA	NA
VEI47672.1\|1724573_1724870_+	Uncharacterised protein	NA	NA	NA	NA
VEI47673.1\|1724961_1725129_+	Uncharacterised protein	NA	NA	NA	NA
VEI47674.1\|1725716_1726250_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
VEI47675.1\|1726442_1726772_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
VEI47676.1\|1726792_1726933_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
VEI47677.1\|1727064_1727325_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
VEI47678.1\|1727524_1727701_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
VEI47679.1\|1727733_1728267_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
VEI47680.1\|1728268_1728493_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
VEI47681.1\|1728534_1728672_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
VEI47682.1\|1728891_1729752_+\|protease	protease	A0A1V0SJA4	Klosneuvirus	2.3e-35	35.8
VEI47683.1\|1729754_1730072_+\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_16

2023973 : 2047080

Salicola_phage(28.57%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI48279.1\|2023973_2024318_-\|transposase	transposase insK for insertion sequence element IS150	A0A2I6AZV9	Macacine_betaherpesvirus	1.2e-30	56.4
VEI48280.1\|2024422_2024689_-\|transposase	putative transposase-like protein	A0A1B1P773	Bacillus_phage	1.1e-09	44.0
VEI48281.1\|2025379_2025943_-	threonine synthase	NA	NA	NA	NA
VEI48282.1\|2026146_2026443_-	threonine synthase	NA	NA	NA	NA
VEI48283.1\|2026478_2026658_-	threonine synthase	NA	NA	NA	NA
VEI48284.1\|2027119_2028274_+	integral membrane protein	NA	NA	NA	NA
VEI48285.1\|2028356_2028707_+	integral membrane protein	NA	NA	NA	NA
VEI48286.1\|2028834_2029041_+	integral membrane protein	NA	NA	NA	NA
VEI48287.1\|2029222_2029555_+	Uncharacterised protein	NA	NA	NA	NA
VEI48288.1\|2029675_2030359_+	tannase and feruloyl esterase	NA	NA	NA	NA
VEI48289.1\|2030316_2030646_+	tannase and feruloyl esterase	NA	NA	NA	NA
VEI48290.1\|2030821_2031301_+	tannase and feruloyl esterase	NA	NA	NA	NA
VEI48291.1\|2031374_2031884_+	Uncharacterised protein	NA	NA	NA	NA
VEI48292.1\|2032498_2033533_+	malate:quinone oxidoreductase	NA	NA	NA	NA
VEI48293.1\|2033934_2034195_+	L-lactate dehydrogenase	NA	NA	NA	NA
VEI48294.1\|2034143_2034896_+	L-lactate dehydrogenase	NA	NA	NA	NA
VEI48295.1\|2035003_2035255_-	LysR family transcriptional regulator	NA	NA	NA	NA
VEI48296.1\|2035349_2035817_-	LysR family transcriptional regulator	NA	NA	NA	NA
VEI48297.1\|2036072_2036231_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
VEI48298.1\|2036331_2036550_+	alpha/beta hydrolase fold protein	NA	NA	NA	NA
VEI48299.1\|2036727_2036955_+	alpha/beta hydrolase fold protein	NA	NA	NA	NA
VEI48300.1\|2037825_2038476_+	sugar phosphate permease	NA	NA	NA	NA
VEI48301.1\|2038492_2038693_+	sugar phosphate permease	NA	NA	NA	NA
VEI48302.1\|2038745_2039099_+	sugar phosphate permease	NA	NA	NA	NA
VEI48303.1\|2039299_2039470_+	RNA polymerase factor sigma-32	NA	NA	NA	NA
VEI48304.1\|2039499_2039700_+	RNA polymerase factor sigma-32	A0A248SJA5	Salicola_phage	1.4e-12	52.5
VEI48305.1\|2039696_2040170_+	RNA polymerase factor sigma-32	A0A248SJA5	Salicola_phage	9.7e-12	34.1
VEI48306.1\|2040338_2040926_-	beta-methylgalactoside transporter inner membrane protein	NA	NA	NA	NA
VEI48307.1\|2040922_2041072_-	beta-methylgalactoside transporter inner membrane protein	NA	NA	NA	NA
VEI48308.1\|2041068_2041158_-	beta-methylgalactoside transporter inner membrane protein	NA	NA	NA	NA
VEI48309.1\|2041160_2041349_-	beta-methylgalactoside transporter inner membrane protein	NA	NA	NA	NA
VEI48310.1\|2041348_2041639_-	galactose/methyl galaxtoside transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	7.0e-05	38.2
VEI48311.1\|2041635_2041737_-	galactose/methyl galaxtoside transporter ATP-binding protein	NA	NA	NA	NA
VEI48312.1\|2041733_2042081_-	galactose/methyl galaxtoside transporter ATP-binding protein	NA	NA	NA	NA
VEI48313.1\|2042074_2042857_-	galactose/methyl galaxtoside transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	3.2e-12	30.2
VEI48314.1\|2042945_2043080_-	periplasmic sugar-binding protein	NA	NA	NA	NA
VEI48315.1\|2043088_2043352_-	periplasmic sugar-binding protein	NA	NA	NA	NA
VEI48316.1\|2043336_2043513_-	periplasmic sugar-binding protein	NA	NA	NA	NA
VEI48317.1\|2043482_2043785_-	periplasmic sugar-binding protein	NA	NA	NA	NA
VEI48318.1\|2044128_2044317_+	RssA protein	NA	NA	NA	NA
VEI48319.1\|2044393_2044672_+	RssA protein	NA	NA	NA	NA
VEI48320.1\|2044641_2045070_+	RssA protein	NA	NA	NA	NA
VEI48321.1\|2045058_2045439_-\|holin	choline-glycine betaine transporter	NA	NA	NA	NA
VEI48322.1\|2045559_2045916_-\|holin	choline-glycine betaine transporter	NA	NA	NA	NA
VEI48323.1\|2045878_2046325_-\|holin	choline-glycine betaine transporter	A0A2I7QNT1	Vibrio_phage	4.7e-08	33.0
VEI48324.1\|2046309_2047080_-\|holin	choline-glycine betaine transporter	NA	NA	NA	NA

DBSCAN-SWA_17

2169099 : 2173946

Salmonella_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI48582.1\|2169099_2169654_-	Uncharacterised protein	A8CG94	Salmonella_phage	9.3e-06	31.9
VEI48583.1\|2169828_2170041_-	Bactoprenol glucosyl transferase homolog from prophage CPS-53	B9UDL7	Salmonella_phage	4.4e-25	75.0
VEI48584.1\|2170513_2170615_-	Uncharacterised protein	NA	NA	NA	NA
VEI48585.1\|2171027_2171954_-\|tRNA	valyl-tRNA synthetase	A0A167RAL2	Powai_lake_megavirus	2.0e-05	17.8
VEI48586.1\|2171908_2172661_-\|tRNA	valyl-tRNA synthetase	A0A1V0S951	Catovirus	2.1e-29	36.3
VEI48587.1\|2172606_2173059_-\|tRNA	valyl-tRNA synthetase	A0A1V0SK04	Klosneuvirus	3.0e-18	39.4
VEI48588.1\|2173079_2173946_-\|tRNA	valyl-tRNA synthetase	A0A1V0SK04	Klosneuvirus	1.1e-61	43.1

DBSCAN-SWA_18

2193227 : 2199111

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEI48633.1\|2193227_2193593_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.1e-38	66.7
VEI48634.1\|2193601_2193853_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.5e-19	56.2
VEI48635.1\|2194061_2194214_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	4.9e-18	87.8
VEI48636.1\|2194210_2194318_+	glucose-1-phosphate thymidylyltransferase	NA	NA	NA	NA
VEI48637.1\|2194259_2194598_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	4.6e-24	56.2
VEI48638.1\|2194558_2194930_+	glucose-1-phosphate thymidylyltransferase	A0A1D7XFC1	Escherichia_phage	9.5e-31	57.5
VEI48639.1\|2195140_2195356_+	30S ribosomal protein S21	NA	NA	NA	NA
VEI48640.1\|2195535_2196099_+	DNA primase	S5M810	Pseudoalteromonas_phage	5.5e-22	41.4
VEI48641.1\|2196095_2197181_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.1e-34	36.6
VEI48642.1\|2197180_2197276_+	DNA primase	NA	NA	NA	NA
VEI48643.1\|2197379_2198177_+	RNA polymerase sigma factor RpoD	NA	NA	NA	NA
VEI48644.1\|2198217_2199111_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.0e-30	36.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134486

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection