CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134510	Actinobacillus delphinicola strain NCTC12871 genome assembly, chromosome: 1	2 crisprs	cas2,cas1,cas9,DEDDh,cas3,DinG	2	11	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134510_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134510_1

167795-168556

orTypeII

Consensus_repeat	Method
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	CRISPRCasFinder
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	CRT
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	PILER-CR

11 spacers

cas2,cas1,cas9

The CRISPR arrays of LR134510_1

>merge|LR134510|1|167795-168556|CRISPRCasFinder,CRT,PILER-CR
ATTGTAACACTCTTTCTCATTTTGCTGTGTTACAATGTCATGCTTGCGACCTGTTGCTTTATCGCCGTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAATCTGAGCATTTTCACCGTCAAAACTCTTATAGTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAATAATAAAACGAAAGGGCTTAAGTACGATTTTGTTGTAACTCCCTTTCTCATTTTACTGTGTTACAATAATAAAAAAGAGGGTGAGGCTATCACCTTAGTTGTAACTCCCTTTCTCATTTTACTGTGTTACAATAAACTTTAGATGAGGCAATTAGCCTTGTTGGTTGTAACTCCCTTTCTCATTTTACTGTGTTACAATCTCAATCGTACGAACATTAACCACGCGAACGTTGTAACTCCCTTTCTCATTTTACTGTGTTACAATAGGCAAAACTGCGATAAAGCCTTTTCCGAAGTTGTAACTCCCTTTCTCATTTTACTGTGTTACAATCTGATAAACGGGCACGATAAAGCTCTATTAGTTGTAACTCCCTTTCTCATTTTACTGTGTTACAATTACACGGCATTGTTTTTGTGTACACGCTTGGTTGTAACTCCCTTTCTCATTTTACTGTGTTACAATTTCTAATAGATATTCCGTTTCTGTTTTTGGGTTGTAACTCCCTTTCTCATTTTACTGTGTTACAATTAACAAGCGGGAGAGTGTTTGCCATTGTTGGTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT

>LR134510|1|1|167795-168556|CRISPRCasFinder
ATTGTAACACTCTTTCTCATTTTGCTGTGTTACAAT	GTCATGCTTGCGACCTGTTGCTTTATCGCC
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	CTGAGCATTTTCACCGTCAAAACTCTTATA
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	AATAAAACGAAAGGGCTTAAGTACGATTTT
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	AATAAAAAAGAGGGTGAGGCTATCACCTTA
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	AAACTTTAGATGAGGCAATTAGCCTTGTTG
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	CTCAATCGTACGAACATTAACCACGCGAAC
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	AGGCAAAACTGCGATAAAGCCTTTTCCGAA
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	CTGATAAACGGGCACGATAAAGCTCTATTA
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	TACACGGCATTGTTTTTGTGTACACGCTTG
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	TTCTAATAGATATTCCGTTTCTGTTTTTGG
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	TAACAAGCGGGAGAGTGTTTGCCATTGTTG
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT

>LR134510|1|1|167795-168556|CRT
ATTGTAACACTCTTTCTCATTTTGCTGTGTTACAAT	GTCATGCTTGCGACCTGTTGCTTTATCGCC
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	CTGAGCATTTTCACCGTCAAAACTCTTATA
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	AATAAAACGAAAGGGCTTAAGTACGATTTT
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	AATAAAAAAGAGGGTGAGGCTATCACCTTA
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	AAACTTTAGATGAGGCAATTAGCCTTGTTG
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	CTCAATCGTACGAACATTAACCACGCGAAC
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	AGGCAAAACTGCGATAAAGCCTTTTCCGAA
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	CTGATAAACGGGCACGATAAAGCTCTATTA
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	TACACGGCATTGTTTTTGTGTACACGCTTG
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	TTCTAATAGATATTCCGTTTCTGTTTTTGG
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT	TAACAAGCGGGAGAGTGTTTGCCATTGTTG
GTTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT

>LR134510|1|1|167796-168556|PILER-CR
TTGTAACACTCTTTCTCATTTTGCTGTGTTACAATG	TCATGCTTGCGACCTGTTGCTTTATCGCCG
TTGTAACTCCCTTTCTCATTTTGCTGTGTTACAATC	TGAGCATTTTCACCGTCAAAACTCTTATAG
TTGTAACTCCCTTTCTCATTTTGCTGTGTTACAATA	ATAAAACGAAAGGGCTTAAGTACGATTTTG
TTGTAACTCCCTTTCTCATTTTACTGTGTTACAATA	ATAAAAAAGAGGGTGAGGCTATCACCTTAG
TTGTAACTCCCTTTCTCATTTTACTGTGTTACAATA	AACTTTAGATGAGGCAATTAGCCTTGTTGG
TTGTAACTCCCTTTCTCATTTTACTGTGTTACAATC	TCAATCGTACGAACATTAACCACGCGAACG
TTGTAACTCCCTTTCTCATTTTACTGTGTTACAATA	GGCAAAACTGCGATAAAGCCTTTTCCGAAG
TTGTAACTCCCTTTCTCATTTTACTGTGTTACAATC	TGATAAACGGGCACGATAAAGCTCTATTAG
TTGTAACTCCCTTTCTCATTTTACTGTGTTACAATT	ACACGGCATTGTTTTTGTGTACACGCTTGG
TTGTAACTCCCTTTCTCATTTTACTGTGTTACAATT	TCTAATAGATATTCCGTTTCTGTTTTTGGG
TTGTAACTCCCTTTCTCATTTTACTGTGTTACAATT	AACAAGCGGGAGAGTGTTTGCCATTGTTGG
TTGTAACTCCCTTTCTCATTTTACTGTGTTACAAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134510.1\|VEJ08756.1\|180714_181752_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134510.1\|VEJ08753.1\|175893_178338_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|236944
LR134510.1\|VEJ08752.1\|175124_175862_-\|23S-rRNA-(guanosine-2'-O-)-methyltransferase	unknown	unknown	gnl\|CDD\|183021
LR134510.1\|VEJ08748.1\|168768_169098_-\|CRISPR-associated-Cas2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134510.1\|VEJ08742.1\|162184_162862_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134510.1\|VEJ08738.1\|154874_157121_+\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|182635
LR134510.1\|VEJ08755.1\|180104_180596_+\|thiol-disulfide-isomerase/thioredoxin	unknown	unknown	gnl\|CDD\|379658
LR134510.1\|VEJ08749.1\|169090_170005_-\|CRISPR-associated-Cas1-family-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LR134510.1\|VEJ08740.1\|159889_160312_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|225403
LR134510.1\|VEJ08757.1\|181814_182399_-\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|224500
LR134510.1\|VEJ08744.1\|164612_165401_+\|Protein-of-uncharacterised-function-(DUF2726)	unknown	unknown	gnl\|CDD\|371282
LR134510.1\|VEJ08746.1\|166456_167026_-\|NfeD-like-C-terminal,-partner-binding	unknown	unknown	gnl\|CDD\|224501
LR134510.1\|VEJ08745.1\|165454_166447_-\|HflC-protein	unknown	unknown	gnl\|CDD\|223407
LR134510.1\|VEJ08751.1\|173671_174526_+\|Small-conductance-mechanosensitive-channel	unknown	unknown	gnl\|CDD\|182386
LR134510.1\|VEJ08741.1\|160930_162100_+\|Cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
LR134510.1\|VEJ08750.1\|170071_173293_-\|CRISPR-associated-endonuclease-Csn1-family-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134510.1\|VEJ08747.1\|167208_167760_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134510.1\|VEJ08743.1\|163234_164461_-\|YadA-domain-containing-protein	unknown	unknown	gnl\|CDD\|380308
LR134510.1\|VEJ08739.1\|157500_159708_-\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|130727
LR134510.1\|VEJ08754.1\|178473_179862_-\|(dimethylallyl)adenosine-tRNA-methylthiotransferase	unknown	unknown	gnl\|CDD\|237673

Protein	Function_ID	Function_description	E-value
LR134510.1\|VEJ08753.1\|175893_178338_-\|ribonuclease-R	gnl\|CDD\|236944	PRK11642, PRK11642, ribonuclease R.	0
LR134510.1\|VEJ08752.1\|175124_175862_-\|23S-rRNA-(guanosine-2'-O-)-methyltransferase	gnl\|CDD\|183021	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB.	5.95146e-173
LR134510.1\|VEJ08748.1\|168768_169098_-\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.50534e-41
LR134510.1\|VEJ08738.1\|154874_157121_+\|copper-translocating-P-type-ATPase	gnl\|CDD\|182635	PRK10671, copA, copper-exporting P-type ATPase CopA.	0
LR134510.1\|VEJ08755.1\|180104_180596_+\|thiol-disulfide-isomerase/thioredoxin	gnl\|CDD\|379658	pfam14595, Thioredoxin_9, Thioredoxin.	2.25336e-26
LR134510.1\|VEJ08749.1\|169090_170005_-\|CRISPR-associated-Cas1-family-protein	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.77549e-121
LR134510.1\|VEJ08740.1\|159889_160312_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|225403	COG2847, COG2847, Copper(I)-binding protein [Inorganic ion transport and metabolism].	2.41791e-31
LR134510.1\|VEJ08757.1\|181814_182399_-\|inner-membrane-protein	gnl\|CDD\|224500	COG1584, COG1584, Predicted membrane protein [Function unknown].	1.33331e-47
LR134510.1\|VEJ08744.1\|164612_165401_+\|Protein-of-uncharacterised-function-(DUF2726)	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	2.25493e-09
LR134510.1\|VEJ08746.1\|166456_167026_-\|NfeD-like-C-terminal,-partner-binding	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	2.04096e-11
LR134510.1\|VEJ08745.1\|165454_166447_-\|HflC-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	8.06409e-50
LR134510.1\|VEJ08751.1\|173671_174526_+\|Small-conductance-mechanosensitive-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	6.66668e-58
LR134510.1\|VEJ08741.1\|160930_162100_+\|Cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
LR134510.1\|VEJ08750.1\|170071_173293_-\|CRISPR-associated-endonuclease-Csn1-family-protein	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LR134510.1\|VEJ08743.1\|163234_164461_-\|YadA-domain-containing-protein	gnl\|CDD\|380308	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA. EmaA (extracellular matrix protein adhesin ) is an outer membrane protein first described in Aggregatibacter (Actinobacillus) actinomycetemcomitans, a member of the Gammaproteobacteria. It is a glycoprotein, and has a C-terminal beta-barrel domain that marks it as an autotransporter. It serves as an adhesin that binds collagen, the most abundant material in the host extracellular matrix. It shares homology with the collagen-binding protein YadA of Yersinia enterocolitica.	3.27973e-16
LR134510.1\|VEJ08739.1\|157500_159708_-\|integral-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
LR134510.1\|VEJ08754.1\|178473_179862_-\|(dimethylallyl)adenosine-tRNA-methylthiotransferase	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0

>LR134510.1|VEJ08747.1|167208_167760_+|Uncharacterised-protein
MGLDIWLYQIEKAKFREEKARYTQANGVEYLSTDNNLTGFSFTINEDDEDDYEEEDESIESPLYDALQPLTLQKEALDREIDEAYMRGNEDISEYFEEKWSELIETCEDSDLAQRNNNCIFLKVSLNDCDTIIHQCITGAMCRDEKVYEGDQNLTERELTTLLFKSAKQQIENGNEVYYYNWF
>LR134510.1|VEJ08746.1|166456_167026_-|NfeD-like-C-terminal,-partner-binding
MKIIYFANLPNICYFLNAKNQNKGFILLENVYFWICVGLILLISEIVVSGVFLMWFGLAALAMSASIGLSTLGFINHPLSILEIILLFVFYSFIFVWLGRKIYGTKPNKEEQPLDYLVGKTGEVKRIIGLNDKDGEVFTDVEARLIDTIWIVHVKGNLKGLDLASKPHIIITKTYRNWVEGELVITTDE
>LR134510.1|VEJ08745.1|165454_166447_-|HflC-protein
MNLDDSFVTLFLSIIILCFAIAILKSIVKIVPQSEEWTVLRLGKFEKILTSGIHVIVPFIERVDRKISTKETVVEVSDLTAFSKDNASVKVSANIFFKIVDAKKACYDVQDLQKTLETIVSTNLRTLVGSLTVEDLMSKRDTINQGVLTIVNEASEQWGVKVLRVELQNMELPQKLTEAMHRQMEADREKRQAIIEAEGERQSTIEKAEGQKQEAILKAQAEKERVVLEAEAEKQQLILKAEAERQQAFLQAEAKERLAQAEAKSVEMISAAIKQGELSALNYDIAQKYTAALQAIGESENAKVVLLPNEFSKLSGSIAGISEIFQEMKK
>LR134510.1|VEJ08744.1|164612_165401_+|Protein-of-uncharacterised-function-(DUF2726)
MLVFILYETQPMYIFKELTREIYHLHPIHALMIGGITSLIFYSLIKCLFHFIYPKKIQKEIIYKPQIIREEKIVYIEKKEKRPFENKLDIYSYNNFFEKKPILTRNEQYFYITLCRLCREIKYHYEEDFFLLAQVPFIEIIKPKHFIPKEDYAKFFHLNKKIALENENEYQWEIQLKNSLMKTAQRVDFILADSSLNPLLIIELDDPSHENNLLNDTKRDLLFKNAGIPTLRFCYDGTSENIPTFTEISSRIMPYLGLQDEN
>LR134510.1|VEJ08743.1|163234_164461_-|YadA-domain-containing-protein
MAFVAFSATSAFANVSTFRQEMNISADKNVNDVLMHRDEHLATVENESIGQDPLQVLWNEIKKNHSTITVDTDDMDHGTQRFELHDPVRAETNNKTGRFDDVKLPQYHSDDPDDSYDPDDEDVSSSSTDTQSTGCDPDCAYVKNNADPDNYPLNHQPLGIYGSDTNIHTDIGTLPAKDSTNSNKNKNPHLKGVVITLNHNLDLGFNGSVAIGKSKIQNGRLTVGETEIQDGSVSVSVDGPKITKQGIDSANKKITHVADGIISPTSQDAVTGRQLYHFRQLINRPVMPDLTQVNLRIAHTDYQLGYLNREMVHLNQRIKYLNQKVDAYDKRAERGIATAMAMSGLPQPTMAGDSMMAVAGSEYHGHSSIAIGYSEVSDNDKEVLKFDTATNLDGKSDIAATIGYGYQW
>LR134510.1|VEJ08742.1|162184_162862_-|Uncharacterised-protein
MIKAITTGAVIVVLSGSVLAEGMAITKQPMAKEMNTPAVNQKVRAILAQKEIDLPASLSCKKAMQAKMIYRLQGDNFAQVVQMPYPTQIVFVKAEAPYNQVALDLAGIDQTKLLYLSKGKKFVAFAEQQKKTPYDKKGLVFHYQDYLYTLGEVKGNGIKLMLGECTATLKDKAEKAYMADIQQKMQYLSDHRQSDAAQAFIKAEQEKAAAARKALKAELAQKMKG
>LR134510.1|VEJ08741.1|160930_162100_+|Cyclopropane-fatty-acyl-phospholipid-synthase
MASSKEIVKELLALADIEINGSRPFDIQVLDDRFYNRVLEDRNLGLGEAYMDGWWNCEAIDELICKILQADLESKLNLKLKINAGLELGKSKIKSLLNPQSIARVKKDVPAHYNLGNELFTAMLDKNMAYSCGYFQDEVHEDLERAQDAKLDLVCRKLDLKPGERVLDIGCGWASFILYAAEHFGVSCDGLTLSSEQMKLGEERIKEAGLQDKVHFILEDYRLYKPEQPYDKLCSIGMFEHVGPKNYQDYFKAASGFLKDNGTFLLHTIGHNITTDDADPWITKYIFPNGYIPSMAQVTSALEGYFIVDDVQNIGVHYDYTLMAWFKNFDKAWDRIQKEYPNKYDERFYRMWKYYLLSCAGAFRARDIHVWQFVLRKKPLDYNPASRSA
>LR134510.1|VEJ08740.1|159889_160312_+|Uncharacterized-protein-conserved-in-bacteria
MKKILTTMAALAPAFLFAQVTVQQPTIAATTQANQPTAIHMTLKNNGNEKVNLVMLETASNARLELHGMKNGRMSPISEIPVPAHGETKLKYGGMHIMVYDLTHPIAVGSTFPVTLFFDNGETLNIKAKAVSPQEMHLHK
>LR134510.1|VEJ08739.1|157500_159708_-|integral-membrane-protein
MRKTLRSWFNGKVISTLPIFVAVNLAAIVIWFLGVSPQAMPLILGMIGAGLVDLDDRFVGRLKNICVMLVVFSCSSFLMQLSIGHSIAFTLLFTIMAFVVTMFGAIGPRYSTMAFGALLVSLYTVLVYTPTVPWFLNPILIVIGAILYSLSSLCIFFIFPNRAVQESVGDVFAALSGYFLEKAQFFDPDDLEEQQQHQLPLAIKNAQVIQAFNQCQGMLFYRIRGQQRRSQIIRMMKYYFAAQEIFERVSADYFDYQSFAKKLKHTDLIFRIQRVFELQGQACADLAQSLQLNTKYTYDPRLERTMNGLLQALEFYQKSHPVCRANLSALQSLVESLQAIDWQLRHINVAQDLNAASKVELHPVQITGLKNMWTAVKGNFTFNSPLFRHAVRLAAVVFISCLIVEIFNLHLGYWILMTAILVCQPNHYATKLRLKQRIGGSILGVLVGSLLPYMQPTLGLDLGIIVLTSTLYFLFRSNNFSYATFFITVQVLVSFYVMGFDIEDVMFSRIMYTLGGAFIAFLASSYLWPDWKYFDLRKTITQSLKVEAKYLLLIISQLQFGHCDQLQYRLVRRKAQDSASSLGNLVNIMNNDPKKYASRLPVAFELLKLNYTLLSYISALGAYRDSMVNIHQPVYFMSSFYPIAKKMVGLLDSLDTLSSVEFDEKMRVIHEGLATFNEEEQRYNENASNTESDVKFLLSQLNLIGQILPLLYTAMHRKVVSKDEDAAQTTQLVAG
>LR134510.1|VEJ08738.1|154874_157121_+|copper-translocating-P-type-ATPase
MIADSNDDDQTTLLLEGMSCAACVLKVQKALEAVPNVTKVQVNLAENTALVTGHNDNPQALVEAVEKIGYGAEVMVDEQSRREKQQRLAQIEFRTRLWQSAVALIVSFSLMGWSFWDKKPVTTANEGIWLSVGIFVLIIMIITGGHFYVKAWKNLLQKSSTMDTLVTLGTASAWLYSMFVVLDPTFFPEGSRHLYFDAAVMIIGLINFGKMLELKGKQQSSKALERLLDLTPATAILVTDKGEEEIPLAKVQAGMILRLQTGERVPVDGVVTQGSGWLDESMLTGEPIAIEKQIGDKVSAGTLLTDGSVLFRAEQVGSHTRLANIIKLVRQAQSSKPPIGQLADKVASIFVPTVISIAILAGLIWYFIGPEPHLSYGLVIFTTVLIIACPCALGLATPMSIIAGVGRAAEIGVLVRNADALQRAATADTLVFDKTGTLTKAEPKITSIHLYNDATEEQVVQLAATLEQGASHPLARAIVERAEEHNLTLGTLDDFTTLKGLGVMGKVAGKIVCLGNQTFMNDQHVDTSVAQQVFEQESEHGSTVIFFAIDGKLASLFVVTDPLRSDTKEAIARLKSLGYHLVMLTGDQQKTAEYLAKEAGIDEVVAGVLPEGKVRTVEDLQRAGRKVVMVGDGINDAPALALADVSIAMGEGSDVAIETAELTLMNPSINTVADALVLSRGILRNIKENLFGAFVYNIICIPLAAGVLYPLWGILVNPMFGAAAMALSSTTVVLNANRLLRFKVRPEK
>LR134510.1|VEJ08748.1|168768_169098_-|CRISPR-associated-Cas2-family-protein
MSKEITFMRFLVFFDLPVTTRAKRKAANRFRIFLQKDDYQMMQFSVYSRILRGQDSQEKHLKRIQERLPKEGSVRVLLITEKQYTGMQLLVGDKRPNEKKITSDQLLLF
>LR134510.1|VEJ08749.1|169090_170005_-|CRISPR-associated-Cas1-family-protein
MTWRTIIVEKGGKLSLKQQQLLIAQERQQFTVPLEDIAIIIIESPETVITAPLLSQLAIYQISLITCDEQHLPCGQWFPLGQYGSPLQTLKLQLNASEPLKKQIWARIVKQKIMNQAFVLGELNLIPARNRLLELAKDVRSGDRTACESQAAMIYFSQAFGKDFCRRTENNINAHLNYAYSVLRSAVARALVQYGWLPYLGLHHCNERNPFNLADDFIEPFRPIVDLKVWHLWQENKLDSGLTPNTKHQLARLLNYEMHFEEQHFTVLASIDRCVGAFKSTLSQQDAKLLKLPEMQSLKEHCYE
>LR134510.1|VEJ08750.1|170071_173293_-|CRISPR-associated-endonuclease-Csn1-family-protein
MENSTLQAQSIPAYVLGLDIGIASIGWACVAVDEKEQPYGLLDCGVRIFDAAENPKDGSSLNATRREKRALRRSIHRRALRMQRGKALCKKFGLLEASDFINKNEVTGLPNDTWELRVAGLTRQLNRKEWAAVLLHLLKHRGYLSQRKSEATTTDKELGKLLSGVAQNHQMLDEKAYQSCAELALNEFKGKWRNHSGDYSHTFNRLDLLAEIHTLFAKQRAFGNSFTDTEFEDTFCDLFMWQKPALSGDALLNMVGKCTFEKGEYRAAKHSYTAERFIMLGKLLNLRFSDNGGQRGLTQEECQQLLELAYKQTKVTYTQVKKALNLPEDTLFKGLPYGRAKTAEEIKKVEGRTFLEAKAYHQIRKAVEKVDKQAWELMKADAKLLDHIGTTFSLYKTDEDFTKQLEHVDLASEIKDSLMMELNFDKFINLSLKALYQILPYMEQGKRYDEACAAIYGDHYGKKLGQISTLLPPLNEEQKYQLTNPVVIRALSQARKVINAIIRKYGSPARVHIETGRDVGKSYKARRDIEKQQEKNRKERELAVKDFSENFPEFGGVPKGKDILKMRLYKAQDGKCLYSGKPLDLRRLNEKGYVEVDHALPFSRTWDDSMNNKVLVLAGENQNKGNKTPYEWLGHTDRWQDFVARVLNSHFSPMKKERILTKVLDEKGFIERNLNDTRYISKFLSQWIDDNLQLTGQGKRRVLMTNGQITSLLRARWGLHKVREENDRHHAMDAVVIACTTPSMQKRISDYSKRREMQLFGERKGKMIDESTGEISYIHFPTPWEYFYQDVNARVFSDNPQNTLQENVPDRAEILADFVTPLFVSRMPNRKVTGQGHLETIRGAKNYLTDKVSTIRKPLTSLKLKDLENMINKEREPVLYEALKARLTEFNDDGAKAFAEPFYKKGGQQVKSIKLQDKQNTGVLLNDGKAIADNGDMVRTDVFIKKGKYFLVPVYAWQVEKGILPMKACIAKKTEDEWEDMDETAEFQFSMYKNDLIEVLRKNKPTIIGYFNKLNRSSGCIDLILHDRDTSQIKDGIIESLGIKGAIAVKKLDVDILGKTISPCKKEKRSDFR
>LR134510.1|VEJ08751.1|173671_174526_+|Small-conductance-mechanosensitive-channel
MTNLIENIKNTDFHHILMDWVVPYSVKIILAIIIYYIGRKVIRLISKLIRKGMDKSGSDPMLSSFVMSIFDLIGLILVIIIALAQLGVDTSSFVALIGAAGLAVGLSLKNSLQNFAAGIMILVFKPFQKGHFIEGAGVSGTVEDIGLIMLKLKTPDNKIVIVPNSTMFSGNITNYSMTGQRRVDLLIDIAYSANIKEARDVILGVLESETRLLKSPEPSIGVNALASSSVQLFVRGWVNTADYFAVKADLLERIKVTLDQNNIEIPYNTLDVNLRTDVNVKTDK
>LR134510.1|VEJ08752.1|175124_175862_-|23S-rRNA-(guanosine-2'-O-)-methyltransferase
MAEQIYGIHAVQAFLTRAPERLIEVYVLKGRDDKRLNPILQQLRQLGIAVQFCGRDALDKKAQGENHQGVIAKIQEAKPLNENDLDTLITNTANPLLLVLDGVTDPHNLGACLRTADAAGVTAVIVPKDNAAQLTSVARKVACGAAETMPLVRVTNLARTLRELQQRHNIWVVGTAGEATSTLYETKLTGATALVMGAEGDGMRRLTRETCDELISIPMAGSVSSLNVSVATGVCLFEIVRQRMA
>LR134510.1|VEJ08753.1|175893_178338_-|ribonuclease-R
MKTVKKQNKKTVSAVKKFKDAALIDPNLAREQQKYANPVPSREFILQIMREYNAPISRAELLDILQIDDEDRKEGLRRRLRAMENEGQVIFTKGKRFALPEKLDLIKGEVIGHRDGYGFLQVDGLKKDLFIPNHQMRGVIHGDIVLAQPNGFDRRGRQEVRIVRVLEERKQQIVGRFFLENGLGYVVPDDNRIQRDILIPDNARRHARMGQVVVVRLQSRNAGFGQLVGEITEVLGDNMAKGMETEIAIRRYDIPHEFPKAVLKQSQQWGESVPDEAKQNRADLRNLPLVTIDGEDARDFDDAVYCQAEKGGWRLWVAIADVSYYVRPNSSLDKEAHNRGNSVYFPSRVVPMLPEVLSNGLCSLNPQVDRLCMVCEMAIDKEGQIKDYKFYEGVMNSFARLTYNKVAKILVDKDEELCERYANLVPHLSDLYDLYKALLTAREQRGTIDFETIESKFIFNEMGRIERIEPVVRNDAHKIIEECMIAANICAANFVEKHKEPALFRVHAKPSEEKLKAFREFLGELGLGLQGGDDPTTEDFAELLEAARNRPDYELIQTMLLRSLSQAIYSAENEGHFGLALQEYAHFTSPIRRYPDLTLHRGIKYVLAKGKGLKRKTTDTGGYHYSFDEMDALGDHCSMTERRADDATRDVADWLKCEFMQDHVGGEYTGVIASVTSFGLFVRLDELFIDGLVHISSLRNEYYQYDAASQRLIGENSGMVYRLGDRVKVKVIGVNLEARQIDFELLDSARGVRNSGKTAKKRFKELANKETQQAAFKKNAKANKKKSTSKVRATKKSASKSRTKVSKKSRAKKA
>LR134510.1|VEJ08754.1|178473_179862_-|(dimethylallyl)adenosine-tRNA-methylthiotransferase
MNEYDSSKMADLLLNTHGLELTENPEEADVLLLNTCSIREKAQEKVFHQLGRWKELKKQNPKLVIGVGGCVASQEGEHIRQRAPYVDVIFGPQTLHRLPEMINQIRGGSRSVIDISFPEIEKFDRLPEPRAEGATAFVSIMEGCNKYCTYCIVPYTRGEEVSRPVDDILFEVAQLAAQGVREVNLLGQNVNAYRGATFDGGICSFAELLRLVASIDGIDRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILNLMKRGHTALEYKSIIRKLRKVRPNIQISSDFIVGFPGETEQDFEDTMNLIAQVNFDMSYSFIYSARPGTPAADMPDDVDEEVKKQRLYLLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFVGTPDMIGKFVDIKITDVYTNSLRGDVVRTEDEMGLRIAQSPQEVMERTRKEDDLGVGQYRVE
>LR134510.1|VEJ08755.1|180104_180596_+|thiol-disulfide-isomerase/thioredoxin
MFTYQDYLNFNSKEDAEKQIAAFEKIQLSYDTLTELEKLKTPQEWIILAEPFCPDCRVFVPIIEKMARNNPLLTLRYIPRYDLEKAQLFDSSEQQKVIEETHSIPSAFLVGEKTTVIYQEFPSLVKEKMDQYPENYQMLRYAYREGGFTDLIEKQLVDFLLRK
>LR134510.1|VEJ08756.1|180714_181752_+|Uncharacterised-protein
MSFYKLLFVSAGLLCVIPTGSAFTLSLPFLKKEAQDLGYTLPKPYGFNFSYMHMQQGIAIDSIGFQGIQLTKQQFTQMGIPAIFQKPLQSNLQKIIDSQLNLFPENGKQKSNVFVFRADAWVLPFLNLYVMGGKMTGMSSSSVTFQSAPIPLKGIPILSQKFGGYYAKGRLDNFKLNLKGNLYGGGAIIAGGYKHIFSVIDFNYTKSKLSIIDGTIKTFVMSPRIGYDFQQALPLRVWIGGMYQDVEENLSGDLAKLGLPNTMSMTLYDKNNQVAKHLNIGKLVKNGQLTIPAPTIGKFHVKQHLIAKWNTLLGFQYQINPNLGLIVEGGFGRRKSILANLDIRF
>LR134510.1|VEJ08757.1|181814_182399_-|inner-membrane-protein
MEMPVKIEKTTGNPGPLGLFSFALSTWLLALINAGEYSISNIGLVLAMGIAFGGTVQFIVGLLCYFKGDTFGFTAFGGFGAFWWSFVLSQMFFTKGVTDNFTGWYLLVWGAFTCGLFAMSLNKDRVLQATLIFVILTLFSLAAGNFGAGTTFLHLGGWLGLISGILAFYLGGAQMINENYGRTIFPIGEYKPKE

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Crispr_ID: LR134510_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134510_2

174614-174913

orTypeII

Consensus_repeat	Method
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	CRISPRCasFinder
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	CRT
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	PILER-CR

4 spacers

cas9,cas1,cas2

The CRISPR arrays of LR134510_2

>merge|LR134510|2|174614-174913|CRISPRCasFinder,CRT,PILER-CR
GGCAATACACCCTTTCTCATTTTGCTGTGTTACAATGAATTTGAAAAGATGGTCGCACAACGTGCGGTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAATGCGGGAGTGACGGAAATCACGAGCTATAACGTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAATTACAACATAATTCAAGATCTAATCAATCGAGTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAATTTCTATTTCTTTAACGATCTGATTTATCAAGTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT

>LR134510|2|2|174614-174913|CRISPRCasFinder
GGCAATACACCCTTTCTCATTTTGCTGTGTTACAAT	GAATTTGAAAAGATGGTCGCACAACGTGCG
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	GCGGGAGTGACGGAAATCACGAGCTATAAC
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	TACAACATAATTCAAGATCTAATCAATCGA
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	TTCTATTTCTTTAACGATCTGATTTATCAA
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT

>LR134510|2|2|174614-174913|CRT
GGCAATACACCCTTTCTCATTTTGCTGTGTTACAAT	GAATTTGAAAAGATGGTCGCACAACGTGCG
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	GCGGGAGTGACGGAAATCACGAGCTATAAC
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	TACAACATAATTCAAGATCTAATCAATCGA
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	TTCTATTTCTTTAACGATCTGATTTATCAA
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT

>LR134510|2|2|174680-174913|PILER-CR
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	GCGGGAGTGACGGAAATCACGAGCTATAAC
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	TACAACATAATTCAAGATCTAATCAATCGA
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT	TTCTATTTCTTTAACGATCTGATTTATCAA
GTTGTAACTCCCTTTCTCATTTTGCTGTGTTACAAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134510.1\|VEJ08761.1\|186743_187463_-\|UDP-2,3-diacylglucosamine-hydrolase	unknown	unknown	gnl\|CDD\|235420
LR134510.1\|VEJ08756.1\|180714_181752_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134510.1\|VEJ08748.1\|168768_169098_-\|CRISPR-associated-Cas2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134510.1\|VEJ08742.1\|162184_162862_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134510.1\|VEJ08755.1\|180104_180596_+\|thiol-disulfide-isomerase/thioredoxin	unknown	unknown	gnl\|CDD\|379658
LR134510.1\|VEJ08749.1\|169090_170005_-\|CRISPR-associated-Cas1-family-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LR134510.1\|VEJ08753.1\|175893_178338_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|236944
LR134510.1\|VEJ08757.1\|181814_182399_-\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|224500
LR134510.1\|VEJ08759.1\|184581_186069_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236407
LR134510.1\|VEJ08752.1\|175124_175862_-\|23S-rRNA-(guanosine-2'-O-)-methyltransferase	unknown	unknown	gnl\|CDD\|183021
LR134510.1\|VEJ08745.1\|165454_166447_-\|HflC-protein	unknown	unknown	gnl\|CDD\|223407
LR134510.1\|VEJ08758.1\|182640_184404_+\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|223104
LR134510.1\|VEJ08760.1\|186132_186495_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|340243
LR134510.1\|VEJ08746.1\|166456_167026_-\|NfeD-like-C-terminal,-partner-binding	unknown	unknown	gnl\|CDD\|224501
LR134510.1\|VEJ08751.1\|173671_174526_+\|Small-conductance-mechanosensitive-channel	unknown	unknown	gnl\|CDD\|182386
LR134510.1\|VEJ08743.1\|163234_164461_-\|YadA-domain-containing-protein	unknown	unknown	gnl\|CDD\|380308
LR134510.1\|VEJ08750.1\|170071_173293_-\|CRISPR-associated-endonuclease-Csn1-family-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134510.1\|VEJ08747.1\|167208_167760_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134510.1\|VEJ08744.1\|164612_165401_+\|Protein-of-uncharacterised-function-(DUF2726)	unknown	unknown	gnl\|CDD\|371282
LR134510.1\|VEJ08754.1\|178473_179862_-\|(dimethylallyl)adenosine-tRNA-methylthiotransferase	unknown	unknown	gnl\|CDD\|237673

Protein	Function_ID	Function_description	E-value
LR134510.1\|VEJ08761.1\|186743_187463_-\|UDP-2,3-diacylglucosamine-hydrolase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.15285e-138
LR134510.1\|VEJ08748.1\|168768_169098_-\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.50534e-41
LR134510.1\|VEJ08755.1\|180104_180596_+\|thiol-disulfide-isomerase/thioredoxin	gnl\|CDD\|379658	pfam14595, Thioredoxin_9, Thioredoxin.	2.25336e-26
LR134510.1\|VEJ08749.1\|169090_170005_-\|CRISPR-associated-Cas1-family-protein	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.77549e-121
LR134510.1\|VEJ08753.1\|175893_178338_-\|ribonuclease-R	gnl\|CDD\|236944	PRK11642, PRK11642, ribonuclease R.	0
LR134510.1\|VEJ08757.1\|181814_182399_-\|inner-membrane-protein	gnl\|CDD\|224500	COG1584, COG1584, Predicted membrane protein [Function unknown].	1.33331e-47
LR134510.1\|VEJ08759.1\|184581_186069_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236407	PRK09198, PRK09198, putative nicotinate phosphoribosyltransferase; Provisional.	0
LR134510.1\|VEJ08754.1\|178473_179862_-\|(dimethylallyl)adenosine-tRNA-methylthiotransferase	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
LR134510.1\|VEJ08745.1\|165454_166447_-\|HflC-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	8.06409e-50
LR134510.1\|VEJ08758.1\|182640_184404_+\|Na+/H+-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	3.36943e-61
LR134510.1\|VEJ08760.1\|186132_186495_-\|Uncharacterised-protein	gnl\|CDD\|340243	pfam17528, DUF5449, Family of unknown function (DUF5449). This is a family of unknown function found in Lactobacillus.	0.000971692
LR134510.1\|VEJ08746.1\|166456_167026_-\|NfeD-like-C-terminal,-partner-binding	gnl\|CDD\|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	2.04096e-11
LR134510.1\|VEJ08751.1\|173671_174526_+\|Small-conductance-mechanosensitive-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	6.66668e-58
LR134510.1\|VEJ08743.1\|163234_164461_-\|YadA-domain-containing-protein	gnl\|CDD\|380308	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA. EmaA (extracellular matrix protein adhesin ) is an outer membrane protein first described in Aggregatibacter (Actinobacillus) actinomycetemcomitans, a member of the Gammaproteobacteria. It is a glycoprotein, and has a C-terminal beta-barrel domain that marks it as an autotransporter. It serves as an adhesin that binds collagen, the most abundant material in the host extracellular matrix. It shares homology with the collagen-binding protein YadA of Yersinia enterocolitica.	3.27973e-16
LR134510.1\|VEJ08750.1\|170071_173293_-\|CRISPR-associated-endonuclease-Csn1-family-protein	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LR134510.1\|VEJ08744.1\|164612_165401_+\|Protein-of-uncharacterised-function-(DUF2726)	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	2.25493e-09
LR134510.1\|VEJ08752.1\|175124_175862_-\|23S-rRNA-(guanosine-2'-O-)-methyltransferase	gnl\|CDD\|183021	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB.	5.95146e-173

>LR134510.1|VEJ08751.1|173671_174526_+|Small-conductance-mechanosensitive-channel
MTNLIENIKNTDFHHILMDWVVPYSVKIILAIIIYYIGRKVIRLISKLIRKGMDKSGSDPMLSSFVMSIFDLIGLILVIIIALAQLGVDTSSFVALIGAAGLAVGLSLKNSLQNFAAGIMILVFKPFQKGHFIEGAGVSGTVEDIGLIMLKLKTPDNKIVIVPNSTMFSGNITNYSMTGQRRVDLLIDIAYSANIKEARDVILGVLESETRLLKSPEPSIGVNALASSSVQLFVRGWVNTADYFAVKADLLERIKVTLDQNNIEIPYNTLDVNLRTDVNVKTDK
>LR134510.1|VEJ08750.1|170071_173293_-|CRISPR-associated-endonuclease-Csn1-family-protein
MENSTLQAQSIPAYVLGLDIGIASIGWACVAVDEKEQPYGLLDCGVRIFDAAENPKDGSSLNATRREKRALRRSIHRRALRMQRGKALCKKFGLLEASDFINKNEVTGLPNDTWELRVAGLTRQLNRKEWAAVLLHLLKHRGYLSQRKSEATTTDKELGKLLSGVAQNHQMLDEKAYQSCAELALNEFKGKWRNHSGDYSHTFNRLDLLAEIHTLFAKQRAFGNSFTDTEFEDTFCDLFMWQKPALSGDALLNMVGKCTFEKGEYRAAKHSYTAERFIMLGKLLNLRFSDNGGQRGLTQEECQQLLELAYKQTKVTYTQVKKALNLPEDTLFKGLPYGRAKTAEEIKKVEGRTFLEAKAYHQIRKAVEKVDKQAWELMKADAKLLDHIGTTFSLYKTDEDFTKQLEHVDLASEIKDSLMMELNFDKFINLSLKALYQILPYMEQGKRYDEACAAIYGDHYGKKLGQISTLLPPLNEEQKYQLTNPVVIRALSQARKVINAIIRKYGSPARVHIETGRDVGKSYKARRDIEKQQEKNRKERELAVKDFSENFPEFGGVPKGKDILKMRLYKAQDGKCLYSGKPLDLRRLNEKGYVEVDHALPFSRTWDDSMNNKVLVLAGENQNKGNKTPYEWLGHTDRWQDFVARVLNSHFSPMKKERILTKVLDEKGFIERNLNDTRYISKFLSQWIDDNLQLTGQGKRRVLMTNGQITSLLRARWGLHKVREENDRHHAMDAVVIACTTPSMQKRISDYSKRREMQLFGERKGKMIDESTGEISYIHFPTPWEYFYQDVNARVFSDNPQNTLQENVPDRAEILADFVTPLFVSRMPNRKVTGQGHLETIRGAKNYLTDKVSTIRKPLTSLKLKDLENMINKEREPVLYEALKARLTEFNDDGAKAFAEPFYKKGGQQVKSIKLQDKQNTGVLLNDGKAIADNGDMVRTDVFIKKGKYFLVPVYAWQVEKGILPMKACIAKKTEDEWEDMDETAEFQFSMYKNDLIEVLRKNKPTIIGYFNKLNRSSGCIDLILHDRDTSQIKDGIIESLGIKGAIAVKKLDVDILGKTISPCKKEKRSDFR
>LR134510.1|VEJ08749.1|169090_170005_-|CRISPR-associated-Cas1-family-protein
MTWRTIIVEKGGKLSLKQQQLLIAQERQQFTVPLEDIAIIIIESPETVITAPLLSQLAIYQISLITCDEQHLPCGQWFPLGQYGSPLQTLKLQLNASEPLKKQIWARIVKQKIMNQAFVLGELNLIPARNRLLELAKDVRSGDRTACESQAAMIYFSQAFGKDFCRRTENNINAHLNYAYSVLRSAVARALVQYGWLPYLGLHHCNERNPFNLADDFIEPFRPIVDLKVWHLWQENKLDSGLTPNTKHQLARLLNYEMHFEEQHFTVLASIDRCVGAFKSTLSQQDAKLLKLPEMQSLKEHCYE
>LR134510.1|VEJ08748.1|168768_169098_-|CRISPR-associated-Cas2-family-protein
MSKEITFMRFLVFFDLPVTTRAKRKAANRFRIFLQKDDYQMMQFSVYSRILRGQDSQEKHLKRIQERLPKEGSVRVLLITEKQYTGMQLLVGDKRPNEKKITSDQLLLF
>LR134510.1|VEJ08747.1|167208_167760_+|Uncharacterised-protein
MGLDIWLYQIEKAKFREEKARYTQANGVEYLSTDNNLTGFSFTINEDDEDDYEEEDESIESPLYDALQPLTLQKEALDREIDEAYMRGNEDISEYFEEKWSELIETCEDSDLAQRNNNCIFLKVSLNDCDTIIHQCITGAMCRDEKVYEGDQNLTERELTTLLFKSAKQQIENGNEVYYYNWF
>LR134510.1|VEJ08746.1|166456_167026_-|NfeD-like-C-terminal,-partner-binding
MKIIYFANLPNICYFLNAKNQNKGFILLENVYFWICVGLILLISEIVVSGVFLMWFGLAALAMSASIGLSTLGFINHPLSILEIILLFVFYSFIFVWLGRKIYGTKPNKEEQPLDYLVGKTGEVKRIIGLNDKDGEVFTDVEARLIDTIWIVHVKGNLKGLDLASKPHIIITKTYRNWVEGELVITTDE
>LR134510.1|VEJ08745.1|165454_166447_-|HflC-protein
MNLDDSFVTLFLSIIILCFAIAILKSIVKIVPQSEEWTVLRLGKFEKILTSGIHVIVPFIERVDRKISTKETVVEVSDLTAFSKDNASVKVSANIFFKIVDAKKACYDVQDLQKTLETIVSTNLRTLVGSLTVEDLMSKRDTINQGVLTIVNEASEQWGVKVLRVELQNMELPQKLTEAMHRQMEADREKRQAIIEAEGERQSTIEKAEGQKQEAILKAQAEKERVVLEAEAEKQQLILKAEAERQQAFLQAEAKERLAQAEAKSVEMISAAIKQGELSALNYDIAQKYTAALQAIGESENAKVVLLPNEFSKLSGSIAGISEIFQEMKK
>LR134510.1|VEJ08744.1|164612_165401_+|Protein-of-uncharacterised-function-(DUF2726)
MLVFILYETQPMYIFKELTREIYHLHPIHALMIGGITSLIFYSLIKCLFHFIYPKKIQKEIIYKPQIIREEKIVYIEKKEKRPFENKLDIYSYNNFFEKKPILTRNEQYFYITLCRLCREIKYHYEEDFFLLAQVPFIEIIKPKHFIPKEDYAKFFHLNKKIALENENEYQWEIQLKNSLMKTAQRVDFILADSSLNPLLIIELDDPSHENNLLNDTKRDLLFKNAGIPTLRFCYDGTSENIPTFTEISSRIMPYLGLQDEN
>LR134510.1|VEJ08743.1|163234_164461_-|YadA-domain-containing-protein
MAFVAFSATSAFANVSTFRQEMNISADKNVNDVLMHRDEHLATVENESIGQDPLQVLWNEIKKNHSTITVDTDDMDHGTQRFELHDPVRAETNNKTGRFDDVKLPQYHSDDPDDSYDPDDEDVSSSSTDTQSTGCDPDCAYVKNNADPDNYPLNHQPLGIYGSDTNIHTDIGTLPAKDSTNSNKNKNPHLKGVVITLNHNLDLGFNGSVAIGKSKIQNGRLTVGETEIQDGSVSVSVDGPKITKQGIDSANKKITHVADGIISPTSQDAVTGRQLYHFRQLINRPVMPDLTQVNLRIAHTDYQLGYLNREMVHLNQRIKYLNQKVDAYDKRAERGIATAMAMSGLPQPTMAGDSMMAVAGSEYHGHSSIAIGYSEVSDNDKEVLKFDTATNLDGKSDIAATIGYGYQW
>LR134510.1|VEJ08742.1|162184_162862_-|Uncharacterised-protein
MIKAITTGAVIVVLSGSVLAEGMAITKQPMAKEMNTPAVNQKVRAILAQKEIDLPASLSCKKAMQAKMIYRLQGDNFAQVVQMPYPTQIVFVKAEAPYNQVALDLAGIDQTKLLYLSKGKKFVAFAEQQKKTPYDKKGLVFHYQDYLYTLGEVKGNGIKLMLGECTATLKDKAEKAYMADIQQKMQYLSDHRQSDAAQAFIKAEQEKAAAARKALKAELAQKMKG
>LR134510.1|VEJ08752.1|175124_175862_-|23S-rRNA-(guanosine-2'-O-)-methyltransferase
MAEQIYGIHAVQAFLTRAPERLIEVYVLKGRDDKRLNPILQQLRQLGIAVQFCGRDALDKKAQGENHQGVIAKIQEAKPLNENDLDTLITNTANPLLLVLDGVTDPHNLGACLRTADAAGVTAVIVPKDNAAQLTSVARKVACGAAETMPLVRVTNLARTLRELQQRHNIWVVGTAGEATSTLYETKLTGATALVMGAEGDGMRRLTRETCDELISIPMAGSVSSLNVSVATGVCLFEIVRQRMA
>LR134510.1|VEJ08753.1|175893_178338_-|ribonuclease-R
MKTVKKQNKKTVSAVKKFKDAALIDPNLAREQQKYANPVPSREFILQIMREYNAPISRAELLDILQIDDEDRKEGLRRRLRAMENEGQVIFTKGKRFALPEKLDLIKGEVIGHRDGYGFLQVDGLKKDLFIPNHQMRGVIHGDIVLAQPNGFDRRGRQEVRIVRVLEERKQQIVGRFFLENGLGYVVPDDNRIQRDILIPDNARRHARMGQVVVVRLQSRNAGFGQLVGEITEVLGDNMAKGMETEIAIRRYDIPHEFPKAVLKQSQQWGESVPDEAKQNRADLRNLPLVTIDGEDARDFDDAVYCQAEKGGWRLWVAIADVSYYVRPNSSLDKEAHNRGNSVYFPSRVVPMLPEVLSNGLCSLNPQVDRLCMVCEMAIDKEGQIKDYKFYEGVMNSFARLTYNKVAKILVDKDEELCERYANLVPHLSDLYDLYKALLTAREQRGTIDFETIESKFIFNEMGRIERIEPVVRNDAHKIIEECMIAANICAANFVEKHKEPALFRVHAKPSEEKLKAFREFLGELGLGLQGGDDPTTEDFAELLEAARNRPDYELIQTMLLRSLSQAIYSAENEGHFGLALQEYAHFTSPIRRYPDLTLHRGIKYVLAKGKGLKRKTTDTGGYHYSFDEMDALGDHCSMTERRADDATRDVADWLKCEFMQDHVGGEYTGVIASVTSFGLFVRLDELFIDGLVHISSLRNEYYQYDAASQRLIGENSGMVYRLGDRVKVKVIGVNLEARQIDFELLDSARGVRNSGKTAKKRFKELANKETQQAAFKKNAKANKKKSTSKVRATKKSASKSRTKVSKKSRAKKA
>LR134510.1|VEJ08754.1|178473_179862_-|(dimethylallyl)adenosine-tRNA-methylthiotransferase
MNEYDSSKMADLLLNTHGLELTENPEEADVLLLNTCSIREKAQEKVFHQLGRWKELKKQNPKLVIGVGGCVASQEGEHIRQRAPYVDVIFGPQTLHRLPEMINQIRGGSRSVIDISFPEIEKFDRLPEPRAEGATAFVSIMEGCNKYCTYCIVPYTRGEEVSRPVDDILFEVAQLAAQGVREVNLLGQNVNAYRGATFDGGICSFAELLRLVASIDGIDRLRFTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILNLMKRGHTALEYKSIIRKLRKVRPNIQISSDFIVGFPGETEQDFEDTMNLIAQVNFDMSYSFIYSARPGTPAADMPDDVDEEVKKQRLYLLQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFVGTPDMIGKFVDIKITDVYTNSLRGDVVRTEDEMGLRIAQSPQEVMERTRKEDDLGVGQYRVE
>LR134510.1|VEJ08755.1|180104_180596_+|thiol-disulfide-isomerase/thioredoxin
MFTYQDYLNFNSKEDAEKQIAAFEKIQLSYDTLTELEKLKTPQEWIILAEPFCPDCRVFVPIIEKMARNNPLLTLRYIPRYDLEKAQLFDSSEQQKVIEETHSIPSAFLVGEKTTVIYQEFPSLVKEKMDQYPENYQMLRYAYREGGFTDLIEKQLVDFLLRK
>LR134510.1|VEJ08756.1|180714_181752_+|Uncharacterised-protein
MSFYKLLFVSAGLLCVIPTGSAFTLSLPFLKKEAQDLGYTLPKPYGFNFSYMHMQQGIAIDSIGFQGIQLTKQQFTQMGIPAIFQKPLQSNLQKIIDSQLNLFPENGKQKSNVFVFRADAWVLPFLNLYVMGGKMTGMSSSSVTFQSAPIPLKGIPILSQKFGGYYAKGRLDNFKLNLKGNLYGGGAIIAGGYKHIFSVIDFNYTKSKLSIIDGTIKTFVMSPRIGYDFQQALPLRVWIGGMYQDVEENLSGDLAKLGLPNTMSMTLYDKNNQVAKHLNIGKLVKNGQLTIPAPTIGKFHVKQHLIAKWNTLLGFQYQINPNLGLIVEGGFGRRKSILANLDIRF
>LR134510.1|VEJ08757.1|181814_182399_-|inner-membrane-protein
MEMPVKIEKTTGNPGPLGLFSFALSTWLLALINAGEYSISNIGLVLAMGIAFGGTVQFIVGLLCYFKGDTFGFTAFGGFGAFWWSFVLSQMFFTKGVTDNFTGWYLLVWGAFTCGLFAMSLNKDRVLQATLIFVILTLFSLAAGNFGAGTTFLHLGGWLGLISGILAFYLGGAQMINENYGRTIFPIGEYKPKE
>LR134510.1|VEJ08758.1|182640_184404_+|Na+/H+-antiporter
MDTSLLLALVIAFGIGAQWLGWYTKQPAILFLLAIGILVGPVLHIFQPDKVLGDLLFPFISLGVAVILFEGALTLEFDEITHHGRIIRLLVSVGMLITISVLSLACYFLFNVDWRIALLFGSLVCVTGPTVIAPLLRSVHPTANIANILKWEGILVDPVGAIAVVLVYEYIISGGDANEFGTFSKLVLIAAVLGYVGAWVLAKLIKRHLVPEYLRNVFVLAFILAIFTFSNHLSHESGLLTVTILGVALANWKGFPKEHILEFKESLTILLISALFIILAARVDLIQLWNVGWRGIILLFVAMFIARPLAIWVSAIGSGLSSNEKWMISWIGPRGIVAAAISSLVAIRLKDSGIRGVDLLVPLVFTIIIGTVFIQGLGAKAVAKLLGVCKTADTGVLIVGANPTALTIARSLKDANVDVLIASNHYEDIAKARMLGFRTYFGSPMSTHADNNLDLIGLGYLFAMSTDKEINTLCQWHYEHEFGNDKIFRVRFSEDQNQTSRLDKQDNLKPNWLFEQGATYAKLASMISKKARIKITNLTENYTFEQYKQDNPKCVLLYTLDENNMISIINERNIQVPKNCRLVALVE
>LR134510.1|VEJ08759.1|184581_186069_+|nicotinate-phosphoribosyltransferase
MAYLQQATAAPFLLCDFYKISHRAQYPQGSEIIYSTFTPRSNKIAPYLTRAVSFGFQAFIKKYLIDYFDRNFFSRKKDEILNEYQQFIRKTLRLEDAGENLAELHDLGYLPIKIKAIPEGQSVAIRVPMLTIENTDKRFFWLTNYLETLINMSMWQPIVSASVARTYRLFLTQIAYKTCDDLTHIPFQAHDFSMRGMSSLESAETSGAAHLTAFVGTDTIPAIQFVDYYYGSEALIGTSIPASEHSVMSAHGVEELSTFRYLMQQFPDTMLSIVADTTDFWYNITVNLPQLKDEIMARPEHAKIIIRPDSGDSYKIICGDPDAKTEHERKGLIQCLWDIFGGKINGKGYKVLNSHIGAIYGDGVNYEKMCRILEGLEKLGFASSNLVFGVGSLTYQNHLRDTLGFAVKATSITINGEEKAIFKAPKTDDGLKKSQRGRIKVLSLDNFIDGLNASDNFEDDILETIFENGELVKTTTFDEIRQRLDDDIIQHLALI
>LR134510.1|VEJ08760.1|186132_186495_-|Uncharacterised-protein
MNDFYAPNLKAIEHMFPELNIQPYKEALQKIDDKLEPCLLGVNKSLWLISRNAFFAILPHAKKAEVWVKREVEQTQLVQMPPHGKAFVTFKPHDVRLTIDGIMEGDLVKFLEQIQPVSKS
>LR134510.1|VEJ08761.1|186743_187463_-|UDP-2,3-diacylglucosamine-hydrolase
MHKTFFISDLHLSDGRPDLTALFVDFIQKHAKTADKLYILGDLFDFWIGDDEKSPVIDIVKTQLLELSEQGIECYFVAGNRDFLVGKRFAQACHMTLLPDYTVIDLYGKPTLLCHGDTLCIDDVKYQQYRKKVQQKWRQWLFLKLPLALRLKIAQKIRQKSQADKRQKAIEIMDVNADFVTKIMRQFQVKTVIHGHTHRQNIHEITEGMRIVLGDWGKTSSILCVESDGKCSFFNESLS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134510_1	1.8\|168293\|30\|LR134510\|CRISPRCasFinder,CRT	168293-168322	30	LR134510.1	1461513-1461542	0	1.0
LR134510_1	1.19\|168294\|30\|LR134510\|PILER-CR	168294-168323	30	LR134510.1	1461513-1461542	0	1.0

1. spacer 1.8|168293|30|LR134510|CRISPRCasFinder,CRT matches to position: 1461513-1461542, mismatch: 0, identity: 1.0

ctgataaacgggcacgataaagctctatta	CRISPR spacer
ctgataaacgggcacgataaagctctatta	Protospacer
******************************

2. spacer 1.19|168294|30|LR134510|PILER-CR matches to position: 1461513-1461542, mismatch: 0, identity: 1.0

ctgataaacgggcacgataaagctctatta	CRISPR spacer
ctgataaacgggcacgataaagctctatta	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134510_2	2.4\|174848\|30\|LR134510\|CRISPRCasFinder,CRT,PILER-CR	174848-174877	30	NZ_CP045062	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p3, complete sequence	29742-29771	6	0.8
LR134510_2	2.4\|174848\|30\|LR134510\|CRISPRCasFinder,CRT,PILER-CR	174848-174877	30	NZ_CP045055	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p3, complete sequence	29743-29772	6	0.8
LR134510_2	2.4\|174848\|30\|LR134510\|CRISPRCasFinder,CRT,PILER-CR	174848-174877	30	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1087671-1087700	7	0.767
LR134510_1	1.5\|168095\|30\|LR134510\|CRISPRCasFinder,CRT	168095-168124	30	NZ_AP017296	Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence	74224-74253	8	0.733
LR134510_1	1.10\|168425\|30\|LR134510\|CRISPRCasFinder,CRT	168425-168454	30	NZ_CP026096	Bacillus asahii strain OM18 plasmid pOM18, complete sequence	42169-42198	8	0.733
LR134510_1	1.10\|168425\|30\|LR134510\|CRISPRCasFinder,CRT	168425-168454	30	NC_013653	Staphylococcus aureus plasmid pPR9, complete sequence	25831-25860	8	0.733
LR134510_1	1.16\|168096\|30\|LR134510\|PILER-CR	168096-168125	30	NZ_AP017296	Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence	74224-74253	8	0.733
LR134510_1	1.21\|168426\|30\|LR134510\|PILER-CR	168426-168455	30	NZ_CP026096	Bacillus asahii strain OM18 plasmid pOM18, complete sequence	42169-42198	8	0.733
LR134510_1	1.21\|168426\|30\|LR134510\|PILER-CR	168426-168455	30	NC_013653	Staphylococcus aureus plasmid pPR9, complete sequence	25831-25860	8	0.733
LR134510_1	1.2\|167897\|30\|LR134510\|CRISPRCasFinder,CRT	167897-167926	30	NC_011664	Shewanella baltica OS223 plasmid pS22301, complete sequence	67325-67354	9	0.7
LR134510_1	1.4\|168029\|30\|LR134510\|CRISPRCasFinder,CRT	168029-168058	30	LR699048	Escherichia phage VpaE1_ev035 genome assembly, chromosome: 1	22077-22106	9	0.7
LR134510_1	1.6\|168161\|30\|LR134510\|CRISPRCasFinder,CRT	168161-168190	30	MN855637	Bacteriophage sp. isolate 32, complete genome	3899-3928	9	0.7
LR134510_1	1.13\|167898\|30\|LR134510\|PILER-CR	167898-167927	30	NC_011664	Shewanella baltica OS223 plasmid pS22301, complete sequence	67325-67354	9	0.7
LR134510_1	1.15\|168030\|30\|LR134510\|PILER-CR	168030-168059	30	LR699048	Escherichia phage VpaE1_ev035 genome assembly, chromosome: 1	22077-22106	9	0.7
LR134510_1	1.17\|168162\|30\|LR134510\|PILER-CR	168162-168191	30	MN855637	Bacteriophage sp. isolate 32, complete genome	3899-3928	9	0.7
LR134510_2	2.4\|174848\|30\|LR134510\|CRISPRCasFinder,CRT,PILER-CR	174848-174877	30	CP002294	Geobacillus sp. Y4.1MC1 plasmid pGY4MC101, complete sequence	4795-4824	9	0.7

1. spacer 2.4|174848|30|LR134510|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045062 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p3, complete sequence) position: , mismatch: 6, identity: 0.8

ttctatttctttaacgatctgatttatcaa	CRISPR spacer
ttcaatttctttaacgatctgaattgctac	Protospacer
*** ****************** **...*

2. spacer 2.4|174848|30|LR134510|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045055 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p3, complete sequence) position: , mismatch: 6, identity: 0.8

ttctatttctttaacgatctgatttatcaa	CRISPR spacer
ttcaatttctttaacgatctgaattgctac	Protospacer
*** ****************** **...*

3. spacer 2.4|174848|30|LR134510|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

ttctatttctttaacgatctgatttatcaa	CRISPR spacer
ggctatttttttaacgatctgctttagcgc	Protospacer
  ******.************ **** *.

4. spacer 1.5|168095|30|LR134510|CRISPRCasFinder,CRT matches to NZ_AP017296 (Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence) position: , mismatch: 8, identity: 0.733

aaactttagatgaggcaattagccttgttg	CRISPR spacer
aaactttagatcaggcaattacagcactta	Protospacer
*********** *********   .  **.

5. spacer 1.10|168425|30|LR134510|CRISPRCasFinder,CRT matches to NZ_CP026096 (Bacillus asahii strain OM18 plasmid pOM18, complete sequence) position: , mismatch: 8, identity: 0.733

ttctaatagatattccgtttctgtttttgg	CRISPR spacer
tcataaaagatattccgtttatgtttccta	Protospacer
*. *** ************* *****.. .

6. spacer 1.10|168425|30|LR134510|CRISPRCasFinder,CRT matches to NC_013653 (Staphylococcus aureus plasmid pPR9, complete sequence) position: , mismatch: 8, identity: 0.733

ttctaatagatattccgtttctgtttttgg	CRISPR spacer
agaaaaaggatattctgtttctgtttttga	Protospacer
    ** .*******.*************.

7. spacer 1.16|168096|30|LR134510|PILER-CR matches to NZ_AP017296 (Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence) position: , mismatch: 8, identity: 0.733

aaactttagatgaggcaattagccttgttg	CRISPR spacer
aaactttagatcaggcaattacagcactta	Protospacer
*********** *********   .  **.

8. spacer 1.21|168426|30|LR134510|PILER-CR matches to NZ_CP026096 (Bacillus asahii strain OM18 plasmid pOM18, complete sequence) position: , mismatch: 8, identity: 0.733

ttctaatagatattccgtttctgtttttgg	CRISPR spacer
tcataaaagatattccgtttatgtttccta	Protospacer
*. *** ************* *****.. .

9. spacer 1.21|168426|30|LR134510|PILER-CR matches to NC_013653 (Staphylococcus aureus plasmid pPR9, complete sequence) position: , mismatch: 8, identity: 0.733

ttctaatagatattccgtttctgtttttgg	CRISPR spacer
agaaaaaggatattctgtttctgtttttga	Protospacer
    ** .*******.*************.

10. spacer 1.2|167897|30|LR134510|CRISPRCasFinder,CRT matches to NC_011664 (Shewanella baltica OS223 plasmid pS22301, complete sequence) position: , mismatch: 9, identity: 0.7

ctgagcattttcaccgtcaaaactcttata	CRISPR spacer
atgagcattttcaccgacaaaaaatctggt	Protospacer
 *************** *****  ..*.

11. spacer 1.4|168029|30|LR134510|CRISPRCasFinder,CRT matches to LR699048 (Escherichia phage VpaE1_ev035 genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.7

aataaaaaagagggtgaggctatcacctta	CRISPR spacer
tggaaaaaagatggtgaggatatcactagc	Protospacer
 . ******** ******* ******.

12. spacer 1.6|168161|30|LR134510|CRISPRCasFinder,CRT matches to MN855637 (Bacteriophage sp. isolate 32, complete genome) position: , mismatch: 9, identity: 0.7

ctcaatcgtacgaacattaaccacgcgaac	CRISPR spacer
tccaatcgtaccaacattaaccattgaatt	Protospacer
..********* ***********.  .* .

13. spacer 1.13|167898|30|LR134510|PILER-CR matches to NC_011664 (Shewanella baltica OS223 plasmid pS22301, complete sequence) position: , mismatch: 9, identity: 0.7

ctgagcattttcaccgtcaaaactcttata	CRISPR spacer
atgagcattttcaccgacaaaaaatctggt	Protospacer
 *************** *****  ..*.

14. spacer 1.15|168030|30|LR134510|PILER-CR matches to LR699048 (Escherichia phage VpaE1_ev035 genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.7

aataaaaaagagggtgaggctatcacctta	CRISPR spacer
tggaaaaaagatggtgaggatatcactagc	Protospacer
 . ******** ******* ******.

15. spacer 1.17|168162|30|LR134510|PILER-CR matches to MN855637 (Bacteriophage sp. isolate 32, complete genome) position: , mismatch: 9, identity: 0.7

ctcaatcgtacgaacattaaccacgcgaac	CRISPR spacer
tccaatcgtaccaacattaaccattgaatt	Protospacer
..********* ***********.  .* .

16. spacer 2.4|174848|30|LR134510|CRISPRCasFinder,CRT,PILER-CR matches to CP002294 (Geobacillus sp. Y4.1MC1 plasmid pGY4MC101, complete sequence) position: , mismatch: 9, identity: 0.7

ttctatttctttaacgatctgatttatcaa	CRISPR spacer
aatcgattctttaacgctctcatttatcac	Protospacer
  ... ********** *** ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1199534 : 1207949

Staphylococcus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ09662.1\|1199534_1200689_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	7.3e-130	64.5
VEJ09663.1\|1200747_1201233_+	SprT-like protein	A0A060AI19	Cronobacter_phage	9.6e-07	29.5
VEJ09664.1\|1201257_1202601_-	exodeoxyribonuclease VII large subunit	A0A1V0SIT1	Klosneuvirus	5.7e-41	34.5
VEJ09665.1\|1202657_1203209_-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	A0A140XBD6	Dickeya_phage	1.1e-22	45.8
VEJ09666.1\|1203218_1204154_-	KpsF/GutQ family protein	A0A2P0VNK5	Tetraselmis_virus	6.7e-41	35.0
VEJ09667.1\|1204221_1205583_-	coproporphyrinogen III oxidase	NA	NA	NA	NA
VEJ09668.1\|1205598_1206627_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
VEJ09669.1\|1206656_1207949_-	glutamate-1-semialdehyde aminotransferase	B5LJF5	Mycobacterium_phage	7.5e-06	24.9

DBSCAN-SWA_2

1259647 : 1292529

Haemophilus_phage(46.15%)

head,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ09720.1\|1259647_1261624_+\|transposase	phage transposase	F6MII5	Haemophilus_phage	7.7e-119	39.3
VEJ09721.1\|1261626_1261989_+	Uncharacterised protein	NA	NA	NA	NA
VEJ09722.1\|1262049_1262202_+	Uncharacterised protein	NA	NA	NA	NA
VEJ09723.1\|1262368_1263247_+	thymidine kinase	A0A0M3LP72	Mannheimia_phage	6.2e-97	61.8
VEJ09724.1\|1263259_1263709_+	Uncharacterised protein	NA	NA	NA	NA
VEJ09725.1\|1263705_1264032_+	Uncharacterised protein	NA	NA	NA	NA
VEJ09726.1\|1264127_1264646_+	Mu-like prophage host-nuclease inhibitor protein Gam	F6MIJ0	Haemophilus_phage	9.5e-45	56.1
VEJ09727.1\|1264658_1264874_+	Uncharacterised protein	NA	NA	NA	NA
VEJ09728.1\|1264984_1265227_+	Uncharacterised protein	NA	NA	NA	NA
VEJ09729.1\|1265319_1265733_+	Mu-like prophage protein gp16	F6MIJ6	Haemophilus_phage	1.1e-27	44.0
VEJ09730.1\|1265732_1266155_+	Uncharacterized conserved protein	F6MIJ8	Haemophilus_phage	3.6e-26	44.2
VEJ09731.1\|1266227_1266707_+	N-acetyl-anhydromuranmyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	1.1e-34	48.0
VEJ09732.1\|1266724_1266955_+	Protein of uncharacterised function (DUF2644)	F6MIK0	Haemophilus_phage	8.8e-19	76.6
VEJ09733.1\|1266954_1267212_+	Protein of uncharacterised function (DUF2681)	NA	NA	NA	NA
VEJ09734.1\|1267328_1267565_+	Protein of uncharacterised function (DUF2730)	NA	NA	NA	NA
VEJ09735.1\|1267561_1267792_+	Uncharacterised protein	A0A0M3LP87	Mannheimia_phage	2.2e-06	36.5
VEJ09736.1\|1267793_1268294_+	Protein of uncharacterised function (DUF1804)	F6MIK6	Haemophilus_phage	5.5e-50	60.2
VEJ09737.1\|1268381_1270010_+	phage uncharacterized protein, C-terminal domain	B7SDN0	Haemophilus_phage	6.9e-251	77.2
VEJ09738.1\|1270026_1271619_+	Mu-like prophage protein gp29	A0A0M3LRU4	Mannheimia_phage	6.5e-177	60.9
VEJ09739.1\|1271615_1272881_+\|head	phage head morphogenesis protein, SPP1 gp7 family	A0A0M3LSH7	Mannheimia_phage	2.9e-103	47.7
VEJ09740.1\|1273048_1273405_+	Helix-turn-helix domain	L7TKV7	Pseudomonas_virus	8.6e-21	50.0
VEJ09741.1\|1273416_1273848_-	Mu-like prophage protein gpG	B7SDN8	Haemophilus_phage	1.1e-22	46.4
VEJ09742.1\|1274140_1275238_+	Mu-like prophage I protein	B7SDN9	Haemophilus_phage	1.1e-90	55.6
VEJ09743.1\|1275237_1276161_+\|head	Mu-like prophage major head subunit gpT	B7SDP1	Haemophilus_phage	1.7e-121	70.7
VEJ09744.1\|1276220_1276850_+	Uncharacterised protein	NA	NA	NA	NA
VEJ09745.1\|1276926_1277316_+	Mu-like prophage protein gp36	A0A2D1GNP0	Pseudomonas_phage	1.1e-16	39.6
VEJ09746.1\|1277312_1277762_+	Uncharacterised protein	NA	NA	NA	NA
VEJ09747.1\|1277771_1278515_+	Uncharacterised protein	A0A2D1GNQ7	Pseudomonas_phage	1.2e-51	44.1
VEJ09748.1\|1278596_1279013_+	Uncharacterised protein	NA	NA	NA	NA
VEJ09749.1\|1279440_1282704_+\|tail	putative tail protein	A0A2D1GNK1	Pseudomonas_phage	1.2e-121	31.3
VEJ09750.1\|1282706_1283666_+	Uncharacterised protein	A0A125RND5	Pseudomonas_phage	2.3e-36	32.0
VEJ09751.1\|1283684_1284677_+	Uncharacterised protein	NA	NA	NA	NA
VEJ09752.1\|1284678_1286364_+	Uncharacterised protein	J9SU43	Pseudomonas_phage	1.5e-78	35.4
VEJ09753.1\|1286407_1287208_+	Uncharacterized conserved protein	A0A2D1GNT2	Pseudomonas_phage	2.8e-72	49.8
VEJ09754.1\|1287218_1287461_+	Uncharacterised protein	A0A2D1GNV4	Pseudomonas_phage	4.4e-21	60.8
VEJ09755.1\|1287467_1287680_+	Uncharacterised protein	NA	NA	NA	NA
VEJ09756.1\|1287682_1290463_+	Uncharacterised protein	A0A2D1GNP9	Pseudomonas_phage	3.1e-174	44.7
VEJ09757.1\|1290865_1291699_+	Site-specific DNA methylase	F6MIM2	Haemophilus_phage	2.7e-102	61.4
VEJ09758.1\|1291710_1292529_+	Modification methylase HpaII	A0A0F7L3T9	uncultured_marine_virus	1.3e-35	34.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134510

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection