CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134512	Streptococcus agalactiae strain NCTC13949 genome assembly, chromosome: 1	1 crisprs	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	3	14	5	1

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CRISPR-Cas detection and classification

Crispr_ID: LR134512_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134512_1

915056-916410

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRT

20 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LR134512_1

>merge|LR134512|1|915056-916410|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCACCAGCAGTTGAACAAACAGCGCCAGCAGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATGATTATCTATCACATAAGGTTATTAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTGATAATTATGTGATGAAAACTTCTTATAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGCTGTTTAGAAGACTTTCTTTTCTTTCCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCGCCAAAATCCCAATGGTCAGACACACGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAATATAATTGCTCTTGCTCTTCTTCCTCTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTCGCCACTTTCATCATACGATTAGCTTCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGATTTAGACATAGTAATTTCTTGAAGCAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCAAATTTGCGATCTCTAAAGACGTTTTGCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTTCCGCTATTTAAAGACTACGTATCCAGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGCTCAACTACTCGTGCTGTCAAAATCAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAGTCACTTGTAACATTTCCATGTTCAAGCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGGGAGGAGAGAATCAATGCCGAATGCTGAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAGGCGATAACTGTACGATAACCTCAAACCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTGTTTCCCATCAAGAGTTGTCATTCCTGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATTCTTTGCTTGATTAATTAATTCGTCTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTACTTGACGAATTGAAGATGACGGAATTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTACTTGACGAATTGAAGATGACGGAATTTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGGTTATACATTTACTAATCCATCAGCATTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

>LR134512|1|1|915056-916344|PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CACCAGCAGTTGAACAAACAGCGCCAGCAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAATGATTATCTATCACATAAGGTTATTAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTGATAATTATGTGATGAAAACTTCTTATA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGCTGTTTAGAAGACTTTCTTTTCTTTCC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGCCAAAATCCCAATGGTCAGACACACGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AATATAATTGCTCTTGCTCTTCTTCCTCTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTCGCCACTTTCATCATACGATTAGCTTC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGATTTAGACATAGTAATTTCTTGAAGCAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CAAATTTGCGATCTCTAAAGACGTTTTGCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTTCCGCTATTTAAAGACTACGTATCCAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGCTCAACTACTCGTGCTGTCAAAATCAG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAGTCACTTGTAACATTTCCATGTTCAAGC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGGGAGGAGAGAATCAATGCCGAATGCTGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGGCGATAACTGTACGATAACCTCAAACCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTGTTTCCCATCAAGAGTTGTCATTCCTGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAATTCTTTGCTTGATTAATTAATTCGTCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACTTGACGAATTGAAGATGACGGAATTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACTTGACGAATTGAAGATGACGGAATTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTATACATTTACTAATCCATCAGCATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>LR134512|1|1|915056-916344|CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CACCAGCAGTTGAACAAACAGCGCCAGCAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAATGATTATCTATCACATAAGGTTATTAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTGATAATTATGTGATGAAAACTTCTTATA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGCTGTTTAGAAGACTTTCTTTTCTTTCC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGCCAAAATCCCAATGGTCAGACACACGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AATATAATTGCTCTTGCTCTTCTTCCTCTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTCGCCACTTTCATCATACGATTAGCTTC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGATTTAGACATAGTAATTTCTTGAAGCAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CAAATTTGCGATCTCTAAAGACGTTTTGCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTTCCGCTATTTAAAGACTACGTATCCAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGCTCAACTACTCGTGCTGTCAAAATCAG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAGTCACTTGTAACATTTCCATGTTCAAGC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGGGAGGAGAGAATCAATGCCGAATGCTGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGGCGATAACTGTACGATAACCTCAAACCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTGTTTCCCATCAAGAGTTGTCATTCCTGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAATTCTTTGCTTGATTAATTAATTCGTCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACTTGACGAATTGAAGATGACGGAATTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACTTGACGAATTGAAGATGACGGAATTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTATACATTTACTAATCCATCAGCATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>LR134512|1|1|915056-916410|CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CACCAGCAGTTGAACAAACAGCGCCAGCAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAATGATTATCTATCACATAAGGTTATTAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTGATAATTATGTGATGAAAACTTCTTATA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGCTGTTTAGAAGACTTTCTTTTCTTTCC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGCCAAAATCCCAATGGTCAGACACACGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AATATAATTGCTCTTGCTCTTCTTCCTCTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTCGCCACTTTCATCATACGATTAGCTTC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGATTTAGACATAGTAATTTCTTGAAGCAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CAAATTTGCGATCTCTAAAGACGTTTTGCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTTCCGCTATTTAAAGACTACGTATCCAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGCTCAACTACTCGTGCTGTCAAAATCAG
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAGTCACTTGTAACATTTCCATGTTCAAGC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGGGAGGAGAGAATCAATGCCGAATGCTGA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AGGCGATAACTGTACGATAACCTCAAACCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTGTTTCCCATCAAGAGTTGTCATTCCTGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAATTCTTTGCTTGATTAATTAATTCGTCT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACTTGACGAATTGAAGATGACGGAATTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TACTTGACGAATTGAAGATGACGGAATTTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTTATACATTTACTAATCCATCAGCATT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAGCTAATTCTCATCTCACCGAGATGGATA
GTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCA

Protein	Signature genes	Signature genes Name	Protein_function
LR134512.1\|VEJ12747.1\|929414_930026_+\|Immunoreactive-protein-Se23.5-(Fragment)	unknown	unknown	gnl\|CDD\|223475
LR134512.1\|VEJ12732.1\|907177_907948_+\|Hypothetical-NagD-like-phosphatase	unknown	unknown	gnl\|CDD\|319832
LR134512.1\|VEJ12746.1\|928065_928704_-\|chloramphenicol-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
LR134512.1\|VEJ12737.1\|914289_914955_+\|CRISPR-associated-protein,-Csn2-family	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
LR134512.1\|VEJ12733.1\|907937_908594_+\|COG4478,-integral-membrane-protein	unknown	unknown	gnl\|CDD\|226884
LR134512.1\|VEJ12736.1\|913961_914303_+\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134512.1\|VEJ12742.1\|922999_923464_+\|Acetyltransferase,-GNAT-family	unknown	unknown	gnl\|CDD\|366181
LR134512.1\|VEJ12734.1\|908981_913094_+\|CRISPR-associated-protein,-Csn1-family	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
LR134512.1\|VEJ12740.1\|919598_922232_+\|internalin,-putative	unknown	unknown	gnl\|CDD\|380193
LR134512.1\|VEJ12744.1\|924049_926842_+\|Cation-transporting-ATPase,-E1-E2-family	unknown	unknown	gnl\|CDD\|223550
LR134512.1\|VEJ12731.1\|906439_907177_+\|Acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
LR134512.1\|VEJ12728.1\|904437_904809_+\|Probable-type-II-DNA-modification-enzyme	unknown	unknown	gnl\|CDD\|377982
LR134512.1\|VEJ12739.1\|917519_919352_+\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LR134512.1\|VEJ12745.1\|926841_927945_+\|Protein-of-uncharacterised-function-(DUF2974)	unknown	unknown	gnl\|CDD\|371412
LR134512.1\|VEJ12730.1\|905305_906436_+\|coproporphyrinogen-III-oxidase-(HemN)	unknown	unknown	gnl\|CDD\|236309
LR134512.1\|VEJ12735.1\|913095_913965_+\|CRISPR-associated-protein-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
LR134512.1\|VEJ12738.1\|916967_917384_+\|Nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
LR134512.1\|VEJ12743.1\|923463_923898_+\|Peptide-methionine-sulfoxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
LR134512.1\|VEJ12729.1\|904833_905214_+\|Pyrimidine-dimer-DNA-glycosylase	unknown	unknown	gnl\|CDD\|131381
LR134512.1\|VEJ12741.1\|922331_922991_+\|HD-domain-protein	unknown	unknown	gnl\|CDD\|224336

Protein	Function_ID	Function_description	E-value
LR134512.1\|VEJ12747.1\|929414_930026_+\|Immunoreactive-protein-Se23.5-(Fragment)	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	6.1265e-31
LR134512.1\|VEJ12732.1\|907177_907948_+\|Hypothetical-NagD-like-phosphatase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
LR134512.1\|VEJ12746.1\|928065_928704_-\|chloramphenicol-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	6.8383e-72
LR134512.1\|VEJ12737.1\|914289_914955_+\|CRISPR-associated-protein,-Csn2-family	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
LR134512.1\|VEJ12733.1\|907937_908594_+\|COG4478,-integral-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
LR134512.1\|VEJ12736.1\|913961_914303_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
LR134512.1\|VEJ12742.1\|922999_923464_+\|Acetyltransferase,-GNAT-family	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91796e-19
LR134512.1\|VEJ12734.1\|908981_913094_+\|CRISPR-associated-protein,-Csn1-family	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
LR134512.1\|VEJ12740.1\|919598_922232_+\|internalin,-putative	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	9.80578e-22
LR134512.1\|VEJ12744.1\|924049_926842_+\|Cation-transporting-ATPase,-E1-E2-family	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
LR134512.1\|VEJ12731.1\|906439_907177_+\|Acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
LR134512.1\|VEJ12728.1\|904437_904809_+\|Probable-type-II-DNA-modification-enzyme	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
LR134512.1\|VEJ12739.1\|917519_919352_+\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LR134512.1\|VEJ12745.1\|926841_927945_+\|Protein-of-uncharacterised-function-(DUF2974)	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.28445e-105
LR134512.1\|VEJ12730.1\|905305_906436_+\|coproporphyrinogen-III-oxidase-(HemN)	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
LR134512.1\|VEJ12735.1\|913095_913965_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
LR134512.1\|VEJ12738.1\|916967_917384_+\|Nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
LR134512.1\|VEJ12743.1\|923463_923898_+\|Peptide-methionine-sulfoxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
LR134512.1\|VEJ12729.1\|904833_905214_+\|Pyrimidine-dimer-DNA-glycosylase	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
LR134512.1\|VEJ12741.1\|922331_922991_+\|HD-domain-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	2.66997e-33

>LR134512.1|VEJ12737.1|914289_914955_+|CRISPR-associated-protein,-Csn2-family
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>LR134512.1|VEJ12736.1|913961_914303_+|CRISPR-associated-protein-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>LR134512.1|VEJ12735.1|913095_913965_+|CRISPR-associated-protein-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>LR134512.1|VEJ12734.1|908981_913094_+|CRISPR-associated-protein,-Csn1-family
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTTFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>LR134512.1|VEJ12733.1|907937_908594_+|COG4478,-integral-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>LR134512.1|VEJ12732.1|907177_907948_+|Hypothetical-NagD-like-phosphatase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>LR134512.1|VEJ12731.1|906439_907177_+|Acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>LR134512.1|VEJ12730.1|905305_906436_+|coproporphyrinogen-III-oxidase-(HemN)
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>LR134512.1|VEJ12729.1|904833_905214_+|Pyrimidine-dimer-DNA-glycosylase
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>LR134512.1|VEJ12728.1|904437_904809_+|Probable-type-II-DNA-modification-enzyme
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE
>LR134512.1|VEJ12738.1|916967_917384_+|Nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>LR134512.1|VEJ12739.1|917519_919352_+|GTP-binding-protein-LepA
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>LR134512.1|VEJ12740.1|919598_922232_+|internalin,-putative
MKGQKIIALAGLVLSCHFALTACHTQEHKNSHHIKTKQVAKKKANKKKVSVKESHKKRKGVAGVDFPTDDGFLLTKDSKILSHTDSGIVVAHGNHSHFIFYSDLKGSKFSYLIPNANTKTNKNQAVRNFKAGAVAVNTLNDGYVFNPADIVSEDANGYVVRHGDHFHYIPKASLSQQKQVQASRAVSRLGNQSNSHYRVNSSKIAGLHYPTSNGFLFNGRGIKGTTPTGILVEHHNHLHFISFADLRKGGWGSIADRYQPQKKADSKKQSPSSKKPRTENTLPKDIKDKLAYLARELHLDISRIRVLKTLNGEIGFEYPHDDHTHVIMAKDIDLSKPIPNPHHDDEDHHKGHHHDESDHKHEEHEHTKSNKLSDEDQKKLIYLAEKLGLNPNQIEVLTSEDGSIIFKYPHDDHSHTIASKDIEIGKPIPDGHHDHSHAKDKVGMATLKQIGFDDEIIQDILHADAPTPFPSNETNPEKMRQWLATVTKINIGQRTNPFQRFGLSLMPNIEVLGIGFTPINDMTPVLQFKKLKQLWMTNTGITDYSFLDKMPLLEGLDISQNGIKDLSFLTKYKQLSLIAAANNGITSLKPLAELPNLQFLVLSHNNISDLTPLSNLTKLQELHLDHNNVKNLSALSGKKDLKVLDLSNNKSADLSTLKTTSLETLLLNETNTSNLSFLKQNPKVSNLTINNAKLASLDGIEESDEIVKVEAEGNQIKSLVLKNKQGSLKFLNVTNNQLTSLEGVNNYTSLETLSVSKNKLESLDIKTPNKTVTNLDFSHNNVPTSQLKLNEKNIPEAVAKNFPAVVEGSMVGNGSLAEKAAMASKEDKQVSDNTNHQKNTEKSAQANADSKKENPKTHDEHHDHEETDHAHVGHHHH
>LR134512.1|VEJ12741.1|922331_922991_+|HD-domain-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANTFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILENISFKAGTGLTMKTLEGQIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>LR134512.1|VEJ12742.1|922999_923464_+|Acetyltransferase,-GNAT-family
MIRRAKEKDLPDIAELLKQILMLHHEVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>LR134512.1|VEJ12743.1|923463_923898_+|Peptide-methionine-sulfoxide-reductase-MsrB
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>LR134512.1|VEJ12744.1|924049_926842_+|Cation-transporting-ATPase,-E1-E2-family
MASTNNVSDTNTRFAKEELEEVFEELGTTQGGLSDEEVAVRQKKYGLNLLSEVKQESIILLFLKNFTSLMAILLWVGGFVAIVSNSLELGLAIWMVNVINGIFSFIQEYRASQATQALEKMLPSYSRVLRKSSEEKILSEQLVPGDIVLIEEGDRISADGRLIKTTDLQVNQSALTGESNPIYKDSNVENDQSKTLIECDNMVFAGTTVSSGSATMVVTAIGMQTQFGQIADLTQGMKSEKSPLQRELDRLTKQISIISITVGIIFFLAATFFVKEPVSKSFIFALGMIVAFIPEGLLPTVTLSLAMAVQRMAKEHALVKKLSSVETLGATSVICSDKTGTLTQNEMTVNHLWQNGKSYQVTGLGYAPEGQILFEGDNICFGNSDRGDLEKLIRFAHLCSNAQVLPPNDDRSTYTVLGDPTEACLNVLLEKSGINIQENRKFAPRLKELPFDSVRKRMTTIHSLGGDEKDKKISITKGAPKEILDLSDYVLSDGKVIPLNKEERNKIQLANDTFAKDGLRVLAVSYCDIEGFSKEQWTQENLEQHMVFIGLIAMSDPPREGVREAIDKCHAASIRIIMVTGDYGLTALSIAKNIGIIRNDDAKVISGLELSEMTDSQLKKELSGEVVFARVAPEQKYRVVTILQEMGEVVAVTGDGVNDAPALKKSDIGVAMGVTGTDVAKESADMILTDDHFASIVHAVEEGRAVYQNIKKFLTYIFNSNTPEAVPSAFFLFSKGFIPLPLTVMQILAVDLGTDMLPALGLGVEPPETDVMNRPPRRLTDRLLDKGLLIKSFLWYGTIESVLAMGGFFWAHYLRYGNFTFFVANGIPYREATTMTLGAIIFSQIGMVMNSRTSYQSIKALSIFGNKLINFGIIMEILAFLVLVYVPLFHNLFNTASLGLSHWLYLISCPFIMIGLDEVRKLFSSRKNKR
>LR134512.1|VEJ12745.1|926841_927945_+|Protein-of-uncharacterised-function-(DUF2974)
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEISLEFEKQFAAMVFTIPNINYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGTGLSLKSICFKKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRETK
>LR134512.1|VEJ12746.1|928065_928704_-|chloramphenicol-acetyltransferase
MASILKKHLEKRLELKNDPMRTDMSTGASYPKYGFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTITGLNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYAVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
>LR134512.1|VEJ12747.1|929414_930026_+|Immunoreactive-protein-Se23.5-(Fragment)
MNMKLSKRYRFWQKVIKALGVLALIATLVLVVYLYKLGILNDSNELKDLVHKYEFWGPMIFIVAQIVQIVFPVIPGGVTTVAGFLIFGPTLGFIYNYIGIIIGSVILFWLVKFYGRKFVLLFMDQKTFDKYESKLETSGYEKFFIFCMASPISPADIMVMITGLSNMSIKRFVTIIMITKPISIIGYSYLWIYGGDILKNFLN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134512_2	2.8\|1916407\|18\|LR134512\|CRT	1916407-1916424	18	LR134512.1	1916431-1916448	0	1.0
LR134512_2	2.5\|1916287\|18\|LR134512\|CRT	1916287-1916304	18	LR134512.1	1593566-1593583	2	0.889
LR134512_2	2.7\|1916371\|18\|LR134512\|CRT	1916371-1916388	18	LR134512.1	1593566-1593583	2	0.889

1. spacer 2.8|1916407|18|LR134512|CRT matches to position: 1916431-1916448, mismatch: 0, identity: 1.0

tggcctctggtttggctt	CRISPR spacer
tggcctctggtttggctt	Protospacer
******************

2. spacer 2.5|1916287|18|LR134512|CRT matches to position: 1593566-1593583, mismatch: 2, identity: 0.889

taacttctggcttagcct	CRISPR spacer
taatttctggctttgcct	Protospacer
***.********* ****

3. spacer 2.7|1916371|18|LR134512|CRT matches to position: 1593566-1593583, mismatch: 2, identity: 0.889

taacttctggcttagcct	CRISPR spacer
taatttctggctttgcct	Protospacer
***.********* ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MK448971	Streptococcus phage Javan52, complete genome	34963-34991	0	1.0
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MK448829	Streptococcus phage Javan7, complete genome	29656-29684	0	1.0
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MK448736	Streptococcus phage Javan35, complete genome	30127-30155	0	1.0
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MK448781	Streptococcus phage Javan5, complete genome	32149-32177	0	1.0
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MK448749	Streptococcus phage Javan39, complete genome	34555-34583	0	1.0
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MH853355	Streptococcus phage LF1, complete genome	20513-20541	0	1.0
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MK448938	Streptococcus phage Javan44, complete genome	30128-30156	0	1.0
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MH853356	Streptococcus phage LF2, partial genome	28424-28452	0	1.0
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MK448911	Streptococcus phage Javan34, complete genome	30127-30155	0	1.0
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MK448837	Streptococcus phage Javan10, complete genome	28185-28213	0	1.0
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MH853358	Streptococcus phage LF4, complete genome	20513-20541	0	1.0
LR134512_1	1.11\|915752\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915752-915780	29	MK448916	Streptococcus phage Javan36, complete genome	30127-30155	0	1.0
LR134512_1	1.12\|915817\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915817-915846	30	MK448729	Streptococcus phage Javan31, complete genome	32676-32705	0	1.0
LR134512_1	1.12\|915817\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915817-915846	30	MK448691	Streptococcus phage Javan17, complete genome	32676-32705	0	1.0
LR134512_1	1.12\|915817\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915817-915846	30	MK448948	Streptococcus phage Javan46, complete genome	32620-32649	0	1.0
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	MK448729	Streptococcus phage Javan31, complete genome	31758-31787	0	1.0
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	MK448691	Streptococcus phage Javan17, complete genome	31758-31787	0	1.0
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	MK448948	Streptococcus phage Javan46, complete genome	31702-31731	0	1.0
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	MK448768	Streptococcus phage Javan47, complete genome	33410-33439	0	1.0
LR134512_1	1.7\|915488\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915488-915517	30	JX409894	Streptococcus phage LYGO9, complete genome	2540-2569	1	0.967
LR134512_1	1.7\|915488\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915488-915517	30	MK448824	Streptococcus phage Javan637, complete genome	5798-5827	1	0.967
LR134512_1	1.7\|915488\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915488-915517	30	MK449002	Streptococcus phage Javan642, complete genome	5798-5827	1	0.967
LR134512_1	1.7\|915488\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915488-915517	30	MK449003	Streptococcus phage Javan648, complete genome	5798-5827	1	0.967
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	39389-39418	4	0.867
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	39878-39907	4	0.867
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	224839-224868	4	0.867
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	225328-225357	4	0.867
LR134512_1	1.5\|915357\|29\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915357-915385	29	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	222480-222508	6	0.793
LR134512_1	1.6\|915422\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915422-915451	30	NZ_CP026419	Acinetobacter sp. ACNIH2 plasmid pACI-6db8, complete sequence	18103-18132	6	0.8
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	NZ_LR214985	Mycoplasma cynos strain NCTC10142 plasmid 12	302-331	6	0.8
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	NZ_LR214985	Mycoplasma cynos strain NCTC10142 plasmid 12	3245-3274	6	0.8
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	859383-859412	6	0.8
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	MN693696	Marine virus AFVG_250M1082, complete genome	16296-16325	6	0.8
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	MN694110	Marine virus AFVG_250M1083, complete genome	23267-23296	6	0.8
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	MN694066	Marine virus AFVG_250M1081, complete genome	16277-16306	6	0.8
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	MN693930	Marine virus AFVG_250M489, complete genome	24202-24231	6	0.8
LR134512_1	1.19\|916279\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916279-916308	30	NC_047897	Lactobacillus phage Lenus, complete genome	65427-65456	6	0.8
LR134512_1	1.19\|916279\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916279-916308	30	AP013698	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C55A-MedDCM-OCT-S36-C68, * SEQUENCING IN PROGRESS *	17874-17903	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NC_047926	Lactobacillus phage Semele, complete genome	8764-8793	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NC_017205	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT72, complete sequence	24255-24284	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP015156	Bacillus thuringiensis strain Bc601 plasmid pBTBC6, complete sequence	23473-23502	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP004869	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB67, complete sequence	54471-54500	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	CP020758	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-19, complete sequence	54683-54712	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP010093	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB71, complete sequence	16188-16217	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP021065	Bacillus thuringiensis strain ATCC 10792 plasmid poh4, complete sequence	80158-80187	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP011358	Bacillus thuringiensis strain YC-10 plasmid pYC2226, complete sequence	78465-78494	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NC_018879	Bacillus thuringiensis Bt407 plasmid BTB_78p, complete sequence	37590-37619	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP013057	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-2, complete sequence	77642-77671	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NC_020382	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-68, complete sequence	43290-43319	6	0.8
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	471778-471807	6	0.8
LR134512_2	2.4\|1916239\|30\|LR134512\|CRT	1916239-1916268	30	LC553736	Salmonella phage SAP012 DNA, complete sequence	29489-29518	6	0.8
LR134512_1	1.1\|915092\|31\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915092-915122	31	MN855826	Myoviridae sp. isolate 252, complete genome	10160-10190	7	0.774
LR134512_1	1.6\|915422\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915422-915451	30	CP024688	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-4-144K, complete sequence	77035-77064	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019135	Synechococcus phage ACG-2014a isolate Syn7803C101, complete genome	70659-70688	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019114	Synechococcus phage ACG-2014a isolate Syn7803US60, complete genome	70565-70594	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019138	Synechococcus phage ACG-2014a isolate Syn7803C107, complete genome	70571-70600	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019122	Synechococcus phage ACG-2014a isolate Syn7803US79, complete genome	70560-70589	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019055	Synechococcus phage ACG-2014a isolate Syn7803C86, complete genome	70658-70687	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019038	Synechococcus phage ACG-2014a isolate Syn7803C59, complete genome	70345-70374	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019068	Synechococcus phage ACG-2014a isolate Syn7803US102, complete genome	70564-70593	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019137	Synechococcus phage ACG-2014a isolate Syn7803C104, complete genome	70655-70684	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019157	Synechococcus phage ACG-2014a isolate Syn7803C31, complete genome	70659-70688	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019087	Synechococcus phage ACG-2014a isolate Syn7803US19, complete genome	70560-70589	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019076	Synechococcus phage ACG-2014a isolate Syn7803US112, complete genome	70564-70593	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019065	Synechococcus phage ACG-2014a isolate Syn7803C99, complete genome	70558-70587	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019026	Synechococcus phage ACG-2014a isolate Syn7803C42, complete genome	70566-70595	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019081	Synechococcus phage ACG-2014a isolate Syn7803US117, complete genome	70565-70594	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019033	Synechococcus phage ACG-2014a isolate Syn7803C53, complete genome	70411-70440	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	NC_023584	Synechococcus phage S-MbCM100, complete genome	71353-71382	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019153	Synechococcus phage ACG-2014a isolate Syn7803C26, complete genome	70560-70589	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019158	Synechococcus phage ACG-2014a isolate Syn7803C33, complete genome	70659-70688	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019067	Synechococcus phage ACG-2014a isolate Syn7803US101, complete genome	70565-70594	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019039	Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome	70559-70588	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019030	Synechococcus phage ACG-2014a isolate Syn7803C47, complete genome	70658-70687	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019163	Synechococcus phage ACG-2014a isolate Syn7803C38, complete genome	70555-70584	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019116	Synechococcus phage ACG-2014a isolate Syn7803US62, complete genome	70374-70403	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019088	Synechococcus phage ACG-2014a isolate Syn7803US1, complete genome	70646-70675	7	0.767
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	KJ019084	Synechococcus phage ACG-2014a isolate Syn7803US123, complete genome	70559-70588	7	0.767
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	CP016196	Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence	21697-21726	7	0.767
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	418643-418672	7	0.767
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	128243-128272	7	0.767
LR134512_1	1.19\|916279\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916279-916308	30	NC_047925	Lactobacillus phage Nyseid, complete genome	67879-67908	7	0.767
LR134512_1	1.19\|916279\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916279-916308	30	KU052488	Lactobacillus phage SA-C12, complete genome	24549-24578	7	0.767
LR134512_1	1.19\|916279\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916279-916308	30	MN693473	Marine virus AFVG_25M504, complete genome	22237-22266	7	0.767
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP020748	Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence	15260-15289	7	0.767
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP020748	Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence	15524-15553	7	0.767
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP020748	Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence	15620-15649	7	0.767
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NC_014331	Bacillus cereus biovar anthracis str. CI plasmid pCI-XO1, complete sequence	68380-68409	7	0.767
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NC_012473	Bacillus cereus 03BB102 plasmid p03BB102_179, complete sequence	53010-53039	7	0.767
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NC_011973	Bacillus cereus Q1 plasmid pBc239, complete sequence	212071-212100	7	0.767
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NC_011973	Bacillus cereus Q1 plasmid pBc239, complete sequence	212107-212136	7	0.767
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NC_011973	Bacillus cereus Q1 plasmid pBc239, complete sequence	212143-212172	7	0.767
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP009317	Bacillus cereus 03BB102 plasmid unnamed, complete sequence	83884-83913	7	0.767
LR134512_2	2.2\|1916119\|30\|LR134512\|CRT	1916119-1916148	30	NC_047926	Lactobacillus phage Semele, complete genome	8764-8793	7	0.767
LR134512_2	2.4\|1916239\|30\|LR134512\|CRT	1916239-1916268	30	NC_019401	Cronobacter phage vB_CsaM_GAP32, complete genome	16598-16627	7	0.767
LR134512_1	1.1\|915092\|31\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915092-915122	31	MG592612	Vibrio phage 1.247.A._10N.261.54.E12, partial genome	16428-16458	8	0.742
LR134512_1	1.1\|915092\|31\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915092-915122	31	KT240186	Dickeya phage BF25/12, complete genome	17171-17201	8	0.742
LR134512_1	1.1\|915092\|31\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915092-915122	31	MG592613	Vibrio phage 1.247.B._10N.261.54.E12, partial genome	16429-16459	8	0.742
LR134512_1	1.2\|915159\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915159-915188	30	NC_031116	Bacillus phage Zuko, complete genome	143340-143369	8	0.733
LR134512_1	1.6\|915422\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915422-915451	30	AP013489	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S45-C81	10044-10073	8	0.733
LR134512_1	1.6\|915422\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915422-915451	30	AP013762	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C30-MedDCM-OCT-S40-C264, * SEQUENCING IN PROGRESS *	4530-4559	8	0.733
LR134512_1	1.6\|915422\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915422-915451	30	AP013487	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S33-C83	26400-26429	8	0.733
LR134512_1	1.6\|915422\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915422-915451	30	AP014446	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C43-MedDCM-OCT-S31-C62, * SEQUENCING IN PROGRESS *, 3 ordered pieces	4157-4186	8	0.733
LR134512_1	1.6\|915422\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915422-915451	30	FJ965538	Streptococcus phage 5093, complete genome	35233-35262	8	0.733
LR134512_1	1.6\|915422\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915422-915451	30	AP013488	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S38-C82	23267-23296	8	0.733
LR134512_1	1.6\|915422\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915422-915451	30	AP013486	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S29-C73	2000-2029	8	0.733
LR134512_1	1.8\|915554\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915554-915583	30	AP013393	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C72-MedDCM-OCT-S43-C21	2272-2301	8	0.733
LR134512_1	1.12\|915817\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915817-915846	30	NC_015223	Nitrosomonas sp. AL212 plasmid pNAL21201, complete sequence	52186-52215	8	0.733
LR134512_1	1.12\|915817\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915817-915846	30	MN693090	Marine virus AFVG_25M23, complete genome	23775-23804	8	0.733
LR134512_1	1.15\|916015\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916015-916044	30	NC_022783	Bacillus toyonensis BCT-7112 plasmid pBCT8, complete sequence	4483-4512	8	0.733
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	15093-15122	8	0.733
LR134512_1	1.16\|916081\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916081-916110	30	NC_048803	Proteus phage Myduc, complete genome	30046-30075	8	0.733
LR134512_1	1.19\|916279\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	916279-916308	30	AP018932	Escherichia phage KIT03 DNA, complete sequence	154828-154857	8	0.733
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP020748	Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence	15776-15805	8	0.733
LR134512_2	2.1\|1916071\|30\|LR134512\|CRT	1916071-1916100	30	NZ_CP013715	Staphylococcus equorum strain C2014 plasmid pC2014-1, complete sequence	54375-54404	8	0.733
LR134512_2	2.2\|1916119\|30\|LR134512\|CRT	1916119-1916148	30	NZ_CP013715	Staphylococcus equorum strain C2014 plasmid pC2014-1, complete sequence	54375-54404	8	0.733
LR134512_1	1.1\|915092\|31\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915092-915122	31	MN855796	Siphoviridae sp. isolate 92, complete genome	10096-10126	9	0.71
LR134512_1	1.2\|915159\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915159-915188	30	MT774384	CrAssphage cr8_1, complete genome	78043-78072	9	0.7
LR134512_1	1.8\|915554\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915554-915583	30	NZ_CP012498	Escherichia coli strain 06-00048 plasmid pCFSAN004178P_02, complete sequence	158562-158591	9	0.7
LR134512_1	1.8\|915554\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915554-915583	30	NZ_CP012500	Escherichia coli strain 09-00049 plasmid pCFSAN004180G, complete sequence	213895-213924	9	0.7
LR134512_1	1.8\|915554\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915554-915583	30	NZ_CP012501	Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence	52891-52920	9	0.7
LR134512_1	1.8\|915554\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915554-915583	30	NZ_CP042296	Escherichia coli strain RM9088 plasmid p1RM9088, complete sequence	92304-92333	9	0.7
LR134512_1	1.8\|915554\|30\|LR134512\|PILER-CR,CRISPRCasFinder,CRT	915554-915583	30	NZ_CP012499	Escherichia coli strain GB089 plasmid pCFSAN004181P, complete sequence	88325-88354	9	0.7
LR134512_2	2.2\|1916119\|30\|LR134512\|CRT	1916119-1916148	30	NZ_CP038858	Escherichia coli strain PigCaeca_2 plasmid unnamed, complete sequence	110911-110940	9	0.7

1. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

2. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

3. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

4. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

5. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

6. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

7. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

8. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

9. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

10. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

11. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

12. spacer 1.11|915752|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 0, identity: 1.0

tgctcaactactcgtgctgtcaaaatcag	CRISPR spacer
tgctcaactactcgtgctgtcaaaatcag	Protospacer
*****************************

13. spacer 1.12|915817|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448729 (Streptococcus phage Javan31, complete genome) position: , mismatch: 0, identity: 1.0

tagtcacttgtaacatttccatgttcaagc	CRISPR spacer
tagtcacttgtaacatttccatgttcaagc	Protospacer
******************************

14. spacer 1.12|915817|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448691 (Streptococcus phage Javan17, complete genome) position: , mismatch: 0, identity: 1.0

tagtcacttgtaacatttccatgttcaagc	CRISPR spacer
tagtcacttgtaacatttccatgttcaagc	Protospacer
******************************

15. spacer 1.12|915817|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448948 (Streptococcus phage Javan46, complete genome) position: , mismatch: 0, identity: 1.0

tagtcacttgtaacatttccatgttcaagc	CRISPR spacer
tagtcacttgtaacatttccatgttcaagc	Protospacer
******************************

16. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448729 (Streptococcus phage Javan31, complete genome) position: , mismatch: 0, identity: 1.0

aaattctttgcttgattaattaattcgtct	CRISPR spacer
aaattctttgcttgattaattaattcgtct	Protospacer
******************************

17. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448691 (Streptococcus phage Javan17, complete genome) position: , mismatch: 0, identity: 1.0

aaattctttgcttgattaattaattcgtct	CRISPR spacer
aaattctttgcttgattaattaattcgtct	Protospacer
******************************

18. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448948 (Streptococcus phage Javan46, complete genome) position: , mismatch: 0, identity: 1.0

aaattctttgcttgattaattaattcgtct	CRISPR spacer
aaattctttgcttgattaattaattcgtct	Protospacer
******************************

19. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 0, identity: 1.0

aaattctttgcttgattaattaattcgtct	CRISPR spacer
aaattctttgcttgattaattaattcgtct	Protospacer
******************************

20. spacer 1.7|915488|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 1, identity: 0.967

attcgccactttcatcatacgattagcttc	CRISPR spacer
attcgccactttcatcatgcgattagcttc	Protospacer
******************.***********

21. spacer 1.7|915488|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK448824 (Streptococcus phage Javan637, complete genome) position: , mismatch: 1, identity: 0.967

attcgccactttcatcatacgattagcttc	CRISPR spacer
attcgccactttcatcatgcgattagcttc	Protospacer
******************.***********

22. spacer 1.7|915488|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK449002 (Streptococcus phage Javan642, complete genome) position: , mismatch: 1, identity: 0.967

attcgccactttcatcatacgattagcttc	CRISPR spacer
attcgccactttcatcatgcgattagcttc	Protospacer
******************.***********

23. spacer 1.7|915488|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MK449003 (Streptococcus phage Javan648, complete genome) position: , mismatch: 1, identity: 0.967

attcgccactttcatcatacgattagcttc	CRISPR spacer
attcgccactttcatcatgcgattagcttc	Protospacer
******************.***********

24. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 4, identity: 0.867

taacttctggcttagcctctggtttggcct	CRISPR spacer
taacttctggcttagcctctgccttggctg	Protospacer
********************* .*****.

25. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 4, identity: 0.867

taacttctggcttagcctctggtttggcct	CRISPR spacer
taacttctggcttagcctctgccttggctg	Protospacer
********************* .*****.

26. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 4, identity: 0.867

taacttctggcttagcctctggtttggcct	CRISPR spacer
taacttctggcttagcctctgccttggctg	Protospacer
********************* .*****.

27. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 4, identity: 0.867

taacttctggcttagcctctggtttggcct	CRISPR spacer
taacttctggcttagcctctgccttggctg	Protospacer
********************* .*****.

28. spacer 1.5|915357|29|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

cgccaaaatcccaatggtcagacacacgt	CRISPR spacer
cgccaaaatcccattggtaagacataatc	Protospacer
************* **** *****.*  .

29. spacer 1.6|915422|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026419 (Acinetobacter sp. ACNIH2 plasmid pACI-6db8, complete sequence) position: , mismatch: 6, identity: 0.8

aatataattgctcttgctcttcttcctcta	CRISPR spacer
gcaataatttctcttgctctttttcctcaa	Protospacer
.  ****** ***********.****** *

30. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214985 (Mycoplasma cynos strain NCTC10142 plasmid 12) position: , mismatch: 6, identity: 0.8

aaattctttgcttgattaattaattcgtct	CRISPR spacer
aattcaattgcttgattaattaatttttct	Protospacer
** *.  ******************. ***

31. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214985 (Mycoplasma cynos strain NCTC10142 plasmid 12) position: , mismatch: 6, identity: 0.8

aaattctttgcttgattaattaattcgtct	CRISPR spacer
aattcaattgcttgattaattaatttttct	Protospacer
** *.  ******************. ***

32. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 6, identity: 0.8

aaattctttgcttgattaattaattcgtct	CRISPR spacer
aattcaattgcttgattaattaatttttct	Protospacer
** *.  ******************. ***

33. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MN693696 (Marine virus AFVG_250M1082, complete genome) position: , mismatch: 6, identity: 0.8

aaattct----ttgcttgattaattaattcgtct	CRISPR spacer
----tctacgattgcttgattaataaattcgttt	Protospacer
    ***    ************* *******.*

34. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MN694110 (Marine virus AFVG_250M1083, complete genome) position: , mismatch: 6, identity: 0.8

aaattct----ttgcttgattaattaattcgtct	CRISPR spacer
----tctacgattgcttgattaataaattcgttt	Protospacer
    ***    ************* *******.*

35. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MN694066 (Marine virus AFVG_250M1081, complete genome) position: , mismatch: 6, identity: 0.8

aaattct----ttgcttgattaattaattcgtct	CRISPR spacer
----tctacgattgcttgattaataaattcgttt	Protospacer
    ***    ************* *******.*

36. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MN693930 (Marine virus AFVG_250M489, complete genome) position: , mismatch: 6, identity: 0.8

aaattctttgcttgattaattaattcgtct	CRISPR spacer
atattatctgcttgattaattaatttttgt	Protospacer
* *** *.*****************. * *

37. spacer 1.19|916279|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NC_047897 (Lactobacillus phage Lenus, complete genome) position: , mismatch: 6, identity: 0.8

tggttatacatttactaatccatcagcatt	CRISPR spacer
ggatggtactgttactaatccatcagcatt	Protospacer
 *.* .***  *******************

38. spacer 1.19|916279|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to AP013698 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C55A-MedDCM-OCT-S36-C68, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

-tggttatacatttactaatccatcagcatt	CRISPR spacer
ctcagta-acagttactaatacatcagcatt	Protospacer
 * . ** *** ******** **********

39. spacer 2.1|1916071|30|LR134512|CRT matches to NC_047926 (Lactobacillus phage Semele, complete genome) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
gaacttctggcttagcttctggttcagttt	Protospacer
 ***************.*******..*..*

40. spacer 2.1|1916071|30|LR134512|CRT matches to NC_017205 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT72, complete sequence) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
tcacttctggcttagtctcaggttttttct	Protospacer
* *************.*** *****  .**

41. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP015156 (Bacillus thuringiensis strain Bc601 plasmid pBTBC6, complete sequence) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
tcacttctggcttagtctcaggttttttct	Protospacer
* *************.*** *****  .**

42. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP004869 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB67, complete sequence) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
tcacttctggcttagtctcaggttttttct	Protospacer
* *************.*** *****  .**

43. spacer 2.1|1916071|30|LR134512|CRT matches to CP020758 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-19, complete sequence) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
tcacttctggcttagtctcaggttttttct	Protospacer
* *************.*** *****  .**

44. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP010093 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB71, complete sequence) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
tcacttctggcttagtctcaggttttttct	Protospacer
* *************.*** *****  .**

45. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP021065 (Bacillus thuringiensis strain ATCC 10792 plasmid poh4, complete sequence) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
tcacttctggcttagtctcaggttttttct	Protospacer
* *************.*** *****  .**

46. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP011358 (Bacillus thuringiensis strain YC-10 plasmid pYC2226, complete sequence) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
tcacttctggcttagtctcaggttttttct	Protospacer
* *************.*** *****  .**

47. spacer 2.1|1916071|30|LR134512|CRT matches to NC_018879 (Bacillus thuringiensis Bt407 plasmid BTB_78p, complete sequence) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
tcacttctggcttagtctcaggttttttct	Protospacer
* *************.*** *****  .**

48. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP013057 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-2, complete sequence) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
tcacttctggcttagtctcaggttttttct	Protospacer
* *************.*** *****  .**

49. spacer 2.1|1916071|30|LR134512|CRT matches to NC_020382 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-68, complete sequence) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
tcacttctggcttagtctcaggttttttct	Protospacer
* *************.*** *****  .**

50. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 6, identity: 0.8

taacttctggcttagcctctggtttggcct	CRISPR spacer
tcacttctggcttttcctctggtttcgttt	Protospacer
* ***********  ********** *..*

51. spacer 2.4|1916239|30|LR134512|CRT matches to LC553736 (Salmonella phage SAP012 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

tagcttctggcttaacgtctggtttggcct	CRISPR spacer
cagcttctggctgatcgtctggttggactt	Protospacer
.*********** * ********* *.*.*

52. spacer 1.1|915092|31|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MN855826 (Myoviridae sp. isolate 252, complete genome) position: , mismatch: 7, identity: 0.774

caccagcagttgaacaaacagcgccagcagt--	CRISPR spacer
caccagcagttgaacacccagcg--ggtagacg	Protospacer
****************  *****  .*.**

53. spacer 1.6|915422|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to CP024688 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-4-144K, complete sequence) position: , mismatch: 7, identity: 0.767

aatataattgctcttgctcttcttcctcta	CRISPR spacer
cctcttcttgctcctgctcttcctcctcta	Protospacer
  * *  ******.********.*******

54. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019135 (Synechococcus phage ACG-2014a isolate Syn7803C101, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

55. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019114 (Synechococcus phage ACG-2014a isolate Syn7803US60, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

56. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019138 (Synechococcus phage ACG-2014a isolate Syn7803C107, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

57. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019122 (Synechococcus phage ACG-2014a isolate Syn7803US79, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

58. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019055 (Synechococcus phage ACG-2014a isolate Syn7803C86, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

59. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019038 (Synechococcus phage ACG-2014a isolate Syn7803C59, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

60. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019068 (Synechococcus phage ACG-2014a isolate Syn7803US102, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

61. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019137 (Synechococcus phage ACG-2014a isolate Syn7803C104, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

62. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019157 (Synechococcus phage ACG-2014a isolate Syn7803C31, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

63. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019087 (Synechococcus phage ACG-2014a isolate Syn7803US19, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

64. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019076 (Synechococcus phage ACG-2014a isolate Syn7803US112, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

65. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019065 (Synechococcus phage ACG-2014a isolate Syn7803C99, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

66. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019026 (Synechococcus phage ACG-2014a isolate Syn7803C42, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

67. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019081 (Synechococcus phage ACG-2014a isolate Syn7803US117, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

68. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019033 (Synechococcus phage ACG-2014a isolate Syn7803C53, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

69. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NC_023584 (Synechococcus phage S-MbCM100, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

70. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019153 (Synechococcus phage ACG-2014a isolate Syn7803C26, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

71. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019158 (Synechococcus phage ACG-2014a isolate Syn7803C33, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

72. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019067 (Synechococcus phage ACG-2014a isolate Syn7803US101, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

73. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019039 (Synechococcus phage ACG-2014a isolate Syn7803C60, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

74. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019030 (Synechococcus phage ACG-2014a isolate Syn7803C47, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

75. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019163 (Synechococcus phage ACG-2014a isolate Syn7803C38, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

76. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019116 (Synechococcus phage ACG-2014a isolate Syn7803US62, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

77. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019088 (Synechococcus phage ACG-2014a isolate Syn7803US1, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

78. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KJ019084 (Synechococcus phage ACG-2014a isolate Syn7803US123, complete genome) position: , mismatch: 7, identity: 0.767

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
acttaacccagcaagagttgtgattcctgt	Protospacer
 . *  **** ********** ********

79. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to CP016196 (Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-2, complete sequence) position: , mismatch: 7, identity: 0.767

aaattctttgcttgattaattaattcgtct	CRISPR spacer
aaattttttgcttgataaattaatattttc	Protospacer
*****.********** ******* . *..

80. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 7, identity: 0.767

aaattctttgcttgattaattaattcgtct	CRISPR spacer
ttgttttttgcttgattaattaatgtttct	Protospacer
  .**.****************** . ***

81. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 7, identity: 0.767

aaattctttgcttgattaattaattcgtct	CRISPR spacer
ttgttttttgcttgattaattaatgtttct	Protospacer
  .**.****************** . ***

82. spacer 1.19|916279|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NC_047925 (Lactobacillus phage Nyseid, complete genome) position: , mismatch: 7, identity: 0.767

tggttatacatttactaatccatcagcatt	CRISPR spacer
ggacggtactgttactaatccatcagcatt	Protospacer
 *.. .***  *******************

83. spacer 1.19|916279|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KU052488 (Lactobacillus phage SA-C12, complete genome) position: , mismatch: 7, identity: 0.767

tggttatacatttactaatccatcagcatt	CRISPR spacer
ggacggtactgttactaatccatcagcatt	Protospacer
 *.. .***  *******************

84. spacer 1.19|916279|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MN693473 (Marine virus AFVG_25M504, complete genome) position: , mismatch: 7, identity: 0.767

tggttatacatttactaatccatcagcatt	CRISPR spacer
tggtgatacatttactaatcctatgccatc	Protospacer
**** ****************  .. ***.

85. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP020748 (Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767

taacttctggcttagcctctggtttggcct	CRISPR spacer
ttggttctggcttaggctctggttttggtt	Protospacer
* . *********** ********* * .*

86. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP020748 (Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767

taacttctggcttagcctctggtttggcct	CRISPR spacer
ttggttctggcttaggctctggttttggtt	Protospacer
* . *********** ********* * .*

87. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP020748 (Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767

taacttctggcttagcctctggtttggcct	CRISPR spacer
ttggttctggcttaggctctggttttggtt	Protospacer
* . *********** ********* * .*

88. spacer 2.1|1916071|30|LR134512|CRT matches to NC_014331 (Bacillus cereus biovar anthracis str. CI plasmid pCI-XO1, complete sequence) position: , mismatch: 7, identity: 0.767

taacttctggcttagcctctggtttggcct	CRISPR spacer
ttgtttctggcttagtctctggttttgttt	Protospacer
* ..***********.********* *..*

89. spacer 2.1|1916071|30|LR134512|CRT matches to NC_012473 (Bacillus cereus 03BB102 plasmid p03BB102_179, complete sequence) position: , mismatch: 7, identity: 0.767

taacttctggcttagcctctggtttggcct	CRISPR spacer
gtactgctggcttagtctctggttttggat	Protospacer
  *** *********.********* *  *

90. spacer 2.1|1916071|30|LR134512|CRT matches to NC_011973 (Bacillus cereus Q1 plasmid pBc239, complete sequence) position: , mismatch: 7, identity: 0.767

taacttctggcttagcctctggtttggcct	CRISPR spacer
ttgtttctggcttagtctctggttttgttt	Protospacer
* ..***********.********* *..*

91. spacer 2.1|1916071|30|LR134512|CRT matches to NC_011973 (Bacillus cereus Q1 plasmid pBc239, complete sequence) position: , mismatch: 7, identity: 0.767

taacttctggcttagcctctggtttggcct	CRISPR spacer
ttgtttctggcttagtctctggttttgttt	Protospacer
* ..***********.********* *..*

92. spacer 2.1|1916071|30|LR134512|CRT matches to NC_011973 (Bacillus cereus Q1 plasmid pBc239, complete sequence) position: , mismatch: 7, identity: 0.767

taacttctggcttagcctctggtttggcct	CRISPR spacer
ttgtttctggcttagtctctggttttgttt	Protospacer
* ..***********.********* *..*

93. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP009317 (Bacillus cereus 03BB102 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

taacttctggcttagcctctggtttggcct	CRISPR spacer
gtactgctggcttagtctctggttttggat	Protospacer
  *** *********.********* *  *

94. spacer 2.2|1916119|30|LR134512|CRT matches to NC_047926 (Lactobacillus phage Semele, complete genome) position: , mismatch: 7, identity: 0.767

taacttctggcttagcctctggtctggcct	CRISPR spacer
gaacttctggcttagcttctggttcagttt	Protospacer
 ***************.******...*..*

95. spacer 2.4|1916239|30|LR134512|CRT matches to NC_019401 (Cronobacter phage vB_CsaM_GAP32, complete genome) position: , mismatch: 7, identity: 0.767

tagcttctggcttaacgtctggtttggcct	CRISPR spacer
caggttctggcttaacttctggttctggtt	Protospacer
.** ************ *******. * .*

96. spacer 1.1|915092|31|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MG592612 (Vibrio phage 1.247.A._10N.261.54.E12, partial genome) position: , mismatch: 8, identity: 0.742

caccagcagttgaacaaacagcgccagcagt	CRISPR spacer
aaccagcactggaacaaacagcgctgctatt	Protospacer
 ******* * *************.. .* *

97. spacer 1.1|915092|31|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to KT240186 (Dickeya phage BF25/12, complete genome) position: , mismatch: 8, identity: 0.742

caccagcagttgaacaaacagcgccagcagt	CRISPR spacer
caccagcagttgaacgtacagcgggtggacg	Protospacer
***************. ******   * *

98. spacer 1.1|915092|31|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MG592613 (Vibrio phage 1.247.B._10N.261.54.E12, partial genome) position: , mismatch: 8, identity: 0.742

caccagcagttgaacaaacagcgccagcagt	CRISPR spacer
aaccagcactggaacaaacagcgctgctatt	Protospacer
 ******* * *************.. .* *

99. spacer 1.2|915159|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NC_031116 (Bacillus phage Zuko, complete genome) position: , mismatch: 8, identity: 0.733

aaatgattatctatcacataaggttattaa	CRISPR spacer
atatgcttatctatcacataaagttcaagg	Protospacer
* *** ***************.***   ..

100. spacer 1.6|915422|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to AP013489 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S45-C81) position: , mismatch: 8, identity: 0.733

aatataattgctcttgctcttcttcctcta	CRISPR spacer
tctatatttgctcttgctctacttcttgat	Protospacer
  **** ************* ****.*

101. spacer 1.6|915422|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to AP013762 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C30-MedDCM-OCT-S40-C264, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

aatataattgctcttgctcttcttcctcta	CRISPR spacer
tctatatttgctcttgctctacttcttgat	Protospacer
  **** ************* ****.*

102. spacer 1.6|915422|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to AP013487 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S33-C83) position: , mismatch: 8, identity: 0.733

aatataattgctcttgctcttcttcctcta	CRISPR spacer
tctatatttgctcttgctctacttcttgat	Protospacer
  **** ************* ****.*

103. spacer 1.6|915422|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to AP014446 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C43-MedDCM-OCT-S31-C62, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 8, identity: 0.733

aatataattgctcttgctcttcttcctcta	CRISPR spacer
tctatatttgctcttgctctacttcttgat	Protospacer
  **** ************* ****.*

104. spacer 1.6|915422|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to FJ965538 (Streptococcus phage 5093, complete genome) position: , mismatch: 8, identity: 0.733

aatataattgctcttgctcttcttcctcta	CRISPR spacer
tttcaatctgctcttgcttttcttcctctg	Protospacer
  *  * .**********.**********.

105. spacer 1.6|915422|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to AP013488 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S38-C82) position: , mismatch: 8, identity: 0.733

aatataattgctcttgctcttcttcctcta	CRISPR spacer
tctatatttgctcttgctctacttcttgat	Protospacer
  **** ************* ****.*

106. spacer 1.6|915422|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to AP013486 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S29-C73) position: , mismatch: 8, identity: 0.733

aatataattgctcttgctcttcttcctcta	CRISPR spacer
tctatatttgctcttgctctacttcttgat	Protospacer
  **** ************* ****.*

107. spacer 1.8|915554|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to AP013393 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C72-MedDCM-OCT-S43-C21) position: , mismatch: 8, identity: 0.733

tgatttagacatagtaatttcttgaagcaa	CRISPR spacer
tgatttagaaataataatttcttatgaaga	Protospacer
********* ***.*********. .. .*

108. spacer 1.12|915817|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NC_015223 (Nitrosomonas sp. AL212 plasmid pNAL21201, complete sequence) position: , mismatch: 8, identity: 0.733

tagtcacttgtaacatttccatgttcaagc	CRISPR spacer
tgaataaatgtaacatttccttgttcaagg	Protospacer
*.. .*  ************ ********

109. spacer 1.12|915817|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MN693090 (Marine virus AFVG_25M23, complete genome) position: , mismatch: 8, identity: 0.733

tagtcacttgtaacatttccatgttcaagc	CRISPR spacer
acgtcactggtaacatctccatgtttacca	Protospacer
  ****** *******.********.*

110. spacer 1.15|916015|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NC_022783 (Bacillus toyonensis BCT-7112 plasmid pBCT8, complete sequence) position: , mismatch: 8, identity: 0.733

ttgtttcccatcaagagttgtcattcctgt	CRISPR spacer
aatcctcccatcatcagttgtcattcctgc	Protospacer
   ..********  **************.

111. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 8, identity: 0.733

aaattctttgcttgattaattaattcgtct	CRISPR spacer
gtaacttttccttgattaattaattcttca	Protospacer
. * ..*** **************** **

112. spacer 1.16|916081|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NC_048803 (Proteus phage Myduc, complete genome) position: , mismatch: 8, identity: 0.733

aaattctttgcttgattaattaattcgtct	CRISPR spacer
aaattctttgcttgcttcattaagcggaaa	Protospacer
************** ** ***** . *

113. spacer 1.19|916279|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to AP018932 (Escherichia phage KIT03 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

tggttatacatttactaatccatcagcatt	CRISPR spacer
gggtaatacatttactaatccaagcgaagg	Protospacer
 *** *****************   * *

114. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP020748 (Bacillus mycoides strain Gnyt1 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.733

taacttctggcttagcctctggtttggcct	CRISPR spacer
ttggttctggcttaggctctggtttttcag	Protospacer
* . *********** *********  *

115. spacer 2.1|1916071|30|LR134512|CRT matches to NZ_CP013715 (Staphylococcus equorum strain C2014 plasmid pC2014-1, complete sequence) position: , mismatch: 8, identity: 0.733

taacttctggcttagcctctggtttggcct	CRISPR spacer
tatcttctggcttagcctcaggtaaaacac	Protospacer
** **************** ***  ..* .

116. spacer 2.2|1916119|30|LR134512|CRT matches to NZ_CP013715 (Staphylococcus equorum strain C2014 plasmid pC2014-1, complete sequence) position: , mismatch: 8, identity: 0.733

taacttctggcttagcctctggtctggcct	CRISPR spacer
tatcttctggcttagcctcaggtaaaacac	Protospacer
** **************** ***  ..* .

117. spacer 1.1|915092|31|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MN855796 (Siphoviridae sp. isolate 92, complete genome) position: , mismatch: 9, identity: 0.71

caccagcagttgaacaaacagcgccagcagt	CRISPR spacer
caccagcagttgaacgtacagcgggtagacc	Protospacer
***************. ******   . * .

118. spacer 1.2|915159|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to MT774384 (CrAssphage cr8_1, complete genome) position: , mismatch: 9, identity: 0.7

aaatgattatctatcacataaggttattaa	CRISPR spacer
taatgattatctattacataagagtgaacc	Protospacer
 *************.*******. *.

119. spacer 1.8|915554|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012498 (Escherichia coli strain 06-00048 plasmid pCFSAN004178P_02, complete sequence) position: , mismatch: 9, identity: 0.7

tgatttagacatagtaatttcttgaagcaa	CRISPR spacer
ccatttagacagagtaatttctttatcatc	Protospacer
. ********* *********** *

120. spacer 1.8|915554|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012500 (Escherichia coli strain 09-00049 plasmid pCFSAN004180G, complete sequence) position: , mismatch: 9, identity: 0.7

tgatttagacatagtaatttcttgaagcaa	CRISPR spacer
ccatttagacagagtaatttctttatcatc	Protospacer
. ********* *********** *

121. spacer 1.8|915554|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012501 (Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence) position: , mismatch: 9, identity: 0.7

tgatttagacatagtaatttcttgaagcaa	CRISPR spacer
ccatttagacagagtaatttctttatcatc	Protospacer
. ********* *********** *

122. spacer 1.8|915554|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042296 (Escherichia coli strain RM9088 plasmid p1RM9088, complete sequence) position: , mismatch: 9, identity: 0.7

tgatttagacatagtaatttcttgaagcaa	CRISPR spacer
ccatttagacagagtaatttctttatcatc	Protospacer
. ********* *********** *

123. spacer 1.8|915554|30|LR134512|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012499 (Escherichia coli strain GB089 plasmid pCFSAN004181P, complete sequence) position: , mismatch: 9, identity: 0.7

tgatttagacatagtaatttcttgaagcaa	CRISPR spacer
ccatttagacagagtaatttctttatcatc	Protospacer
. ********* *********** *

124. spacer 2.2|1916119|30|LR134512|CRT matches to NZ_CP038858 (Escherichia coli strain PigCaeca_2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

taacttctggcttagcctctggtctggcct	CRISPR spacer
agcagtctggcttatcctctggtctgtggt	Protospacer
 .   ********* ***********   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36473 : 48538

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ11910.1\|36473_40199_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.9e-38	25.9
VEJ11911.1\|40432_41887_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.7e-54	32.7
VEJ11912.1\|41914_42937_+	phosphoribosylaminoimidazole synthetase	R9TMC7	Synechococcus_phage	1.1e-63	42.7
VEJ11913.1\|43104_43653_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-25	35.6
VEJ11914.1\|43675_44428_+	acetyltransferase, GNAT family	NA	NA	NA	NA
VEJ11915.1\|44447_45995_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	Q58MG4	Prochlorococcus_phage	3.9e-78	49.2
VEJ11916.1\|46187_47087_+	peptidase, M23/M37 family	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
VEJ11917.1\|47233_48538_+	Group B streptococcal surface immunogenic protein	A0A2D1GNZ3	Streptomyces_phage	3.7e-05	40.5

DBSCAN-SWA_2

196955 : 246405

Streptococcus_phage(25.0%)

tRNA,lysis,integrase,holin

attL 213210:213231|attR 231767:231788

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ12061.1\|196955_197582_+\|tRNA	Phenylalanyl-tRNA synthetase domain protein (Bsu YtpR)	NA	NA	NA	NA
VEJ12062.1\|197635_198352_-	probable S-adenosylmethionine-dependent methyltransferase	NA	NA	NA	NA
VEJ12063.1\|198432_198828_+\|tRNA	FIG107367: tRNA-binding protein	A1EAD1	Streptococcus_phage	1.9e-29	50.0
VEJ12064.1\|198951_199596_+	Hydrolase, haloacid dehalogenase-like family	A0A1D8KNV9	Synechococcus_phage	2.2e-11	29.2
VEJ12065.1\|199622_201368_+\|lysis	Autolysis histidine kinase LytS	Q9EYF3	Enterobacteria_phage	1.0e-58	28.8
VEJ12066.1\|201348_202089_+\|lysis	Autolysis response regulater LytR	NA	NA	NA	NA
VEJ12067.1\|202258_202714_+\|holin	Antiholin-like protein LrgA	NA	NA	NA	NA
VEJ12068.1\|202715_203444_+	LrgA-associated membrane protein LrgB	NA	NA	NA	NA
VEJ12069.1\|203686_205315_+	Glutathione-binding protein gsiB	NA	NA	NA	NA
VEJ12070.1\|205427_206405_+	oligopeptide ABC transporter (permease)	NA	NA	NA	NA
VEJ12071.1\|206401_207223_+	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	NA	NA	NA	NA
VEJ12072.1\|207234_208038_+	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	A0A2R8FG22	Brazilian_cedratvirus	3.2e-07	26.9
VEJ12073.1\|208021_208648_+	Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2)	G3M9Y6	Bacillus_virus	2.3e-16	27.0
VEJ12074.1\|208930_210961_+	PTS system, trehalose-specific IIB component / PTS system, trehalose-specific IIC component/ PTS system, trehalose-specific IIA component	NA	NA	NA	NA
VEJ12075.1\|211182_212808_+	Trehalose-6-phosphate hydrolase	NA	NA	NA	NA
VEJ12076.1\|213023_215060_+	Predicted galactitol operon regulator (Transcriptional antiterminator), BglG family / PTS system,mannitol/fructose-specific IIA component	NA	NA	NA	NA
213210:213231	attL	NA	NA	NA	NA
VEJ12077.1\|215062_215347_+	PTS system ascorbate-specific transporter subunits IICB	NA	NA	NA	NA
VEJ12078.1\|215359_216715_+	Putative integral membrane protein	NA	NA	NA	NA
VEJ12079.1\|216717_217575_+	Transketolase, N-terminal section	NA	NA	NA	NA
VEJ12080.1\|217571_218501_+	Transketolase, C-terminal section	NA	NA	NA	NA
VEJ12081.1\|218528_219869_+	oxidoreductase, putative	NA	NA	NA	NA
VEJ12082.1\|219956_220226_+	30S ribosomal protein S15	NA	NA	NA	NA
VEJ12083.1\|220606_222736_+	Polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
VEJ12084.1\|222737_223490_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12085.1\|223498_224083_+	serine acetyltransferase	NA	NA	NA	NA
VEJ12086.1\|224092_224275_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12087.1\|224271_225615_+\|tRNA	Cysteinyl-tRNA synthetase	A0A1V0SAQ2	Catovirus	2.9e-53	31.2
VEJ12088.1\|225607_225994_+	COG1939: Ribonuclease III family protein	NA	NA	NA	NA
VEJ12089.1\|226096_226852_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
VEJ12090.1\|226848_227367_+	Predicted RNA-binding protein containing a PIN domain	NA	NA	NA	NA
VEJ12091.1\|227459_228320_+\|tRNA	DegV family protein in cluster with TrmH family tRNA/rRNA methyltransferase YacO	NA	NA	NA	NA
VEJ12092.1\|229200_229647_+	50S ribosomal protein L13	NA	NA	NA	NA
VEJ12093.1\|229667_230060_+	SSU ribosomal protein S9p (S16e)	NA	NA	NA	NA
VEJ12094.1\|230187_231342_-\|integrase	site-specific recombinase, phage integrase family	A0A1S5S7K9	Streptococcus_phage	6.0e-47	33.4
VEJ12095.1\|231410_231962_-	DNA-binding protein	NA	NA	NA	NA
231767:231788	attR	NA	NA	NA	NA
VEJ12096.1\|232087_232420_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12097.1\|232560_232842_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12098.1\|232847_233174_+	replication initiation factor	NA	NA	NA	NA
VEJ12099.1\|233177_233819_+	Arsenate reductase and related proteins, glutaredoxin family	NA	NA	NA	NA
VEJ12100.1\|234130_235006_+	replication initiation factor family protein	NA	NA	NA	NA
VEJ12101.1\|235041_235476_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12102.1\|235792_237049_+	Mobilization protein MobM	M1NXP9	Cellulophaga_phage	3.2e-14	30.8
VEJ12103.1\|237216_237687_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12104.1\|237991_238327_-	Toxin to DNA-damage-inducible protein J	NA	NA	NA	NA
VEJ12105.1\|238316_238604_-	DNA-damage-inducible protein J	NA	NA	NA	NA
VEJ12106.1\|239110_239401_+	virulence factor EsxA	NA	NA	NA	NA
VEJ12107.1\|239574_239910_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12108.1\|239909_240470_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12109.1\|240442_241123_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12110.1\|241107_241494_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12111.1\|241527_241809_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12112.1\|242440_242530_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12113.1\|242526_242652_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12114.1\|242651_243512_+	Positive transcriptional regulator, MutR family	NA	NA	NA	NA
VEJ12115.1\|243584_244766_+	MFS general substrate transporter	NA	NA	NA	NA
VEJ12116.1\|244827_245478_-\|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD	NA	NA	NA	NA
VEJ12117.1\|245478_246405_-\|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	NA	NA	NA	NA

DBSCAN-SWA_3

556118 : 634095

Streptococcus_phage(86.27%)

protease,head,integrase,capsid,transposase,portal,lysis,terminase,tail

attL 555529:555543|attR 565623:565637

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
555529:555543	attL	NA	NA	NA	NA
VEJ12410.1\|556118_556385_-\|integrase	integrase	Q77YW7	Streptococcus_phage	9.2e-20	65.2
VEJ12411.1\|556561_556789_+	Transposase	NA	NA	NA	NA
VEJ12412.1\|556950_557151_+\|transposase	ISSth1, transposase (orf2), IS3 family	NA	NA	NA	NA
VEJ12413.1\|557175_557433_+\|transposase	IS3 familytransposase orf2	A0A0C5AEA5	Paenibacillus_phage	5.8e-11	43.5
VEJ12414.1\|558843_560121_+	ABC transporter membrane-spanning permease, Pep export, Vex3	NA	NA	NA	NA
VEJ12415.1\|560130_560787_+	ABC transporter, ATP-binding protein Vex2	G9BWD6	Planktothrix_phage	2.2e-22	31.8
VEJ12416.1\|560786_562163_+	ABC transporter membrane-spanning permease, Pep export, Vex3	NA	NA	NA	NA
VEJ12417.1\|562259_562913_+	Two-component response regulator VncR	W8CYM9	Bacillus_phage	8.1e-25	33.6
VEJ12418.1\|562909_564211_+	sensor histidine kinase VncS	W8CYF6	Bacillus_phage	1.7e-05	25.7
VEJ12419.1\|564262_564874_-	Mobile element protein	Q8W6R2	Burkholderia_virus	2.9e-16	27.8
VEJ12420.1\|565087_565267_+	CsbD-like	J7KJ36	Streptococcus_phage	4.3e-21	96.4
VEJ12421.1\|565921_567127_+	Cell division protein FtsW	NA	NA	NA	NA
565623:565637	attR	NA	NA	NA	NA
VEJ12422.1\|567245_567806_+	hydrolase, haloacid dehalogenase-like family	NA	NA	NA	NA
VEJ12423.1\|567806_569759_+	DNA gyrase subunit B	G3M9Z3	Bacillus_virus	1.5e-143	44.8
VEJ12424.1\|569852_571577_+	Septation ring formation regulator EzrA	NA	NA	NA	NA
VEJ12425.1\|571670_572312_+	Phosphoserine phosphatase	NA	NA	NA	NA
VEJ12426.1\|572332_572818_-	MutT/nudix family protein	NA	NA	NA	NA
VEJ12427.1\|572830_573286_-	Uncharacterized conserved protein	W6LLD2	Streptococcus_phage	7.8e-27	48.9
VEJ12428.1\|573483_574791_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	1.5e-235	95.4
VEJ12429.1\|574898_575963_-	Streptococcal extracellular nuclease 2	NA	NA	NA	NA
VEJ12430.1\|576191_577475_+	5-Enolpyruvylshikimate-3-phosphate synthase	NA	NA	NA	NA
VEJ12431.1\|577467_577980_+	Shikimate kinase I	NA	NA	NA	NA
VEJ12432.1\|578036_579410_+	Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F1 (as in PMID19099556)	NA	NA	NA	NA
VEJ12433.1\|579510_580866_+	23S rRNA (uracil-5-)-methyltransferase RumA	D0R096	Streptococcus_phage	2.3e-191	73.4
VEJ12434.1\|581387_581906_+	DUF1706 domain-containing protein	NA	NA	NA	NA
VEJ12435.1\|582208_582739_-	Transcriptional regulator, TetR family	NA	NA	NA	NA
VEJ12436.1\|582908_589385_+	Surface protein Rib	NA	NA	NA	NA
VEJ12437.1\|589697_590699_+	N-acetyl-L,L-diaminopimelate deacetylase	NA	NA	NA	NA
VEJ12438.1\|590718_590916_+	N-acetyl-L,L-diaminopimelate deacetylase	NA	NA	NA	NA
VEJ12439.1\|591154_593023_+	Domain of uncharacterised function (DUF955)	E4ZFJ9	Streptococcus_phage	2.0e-302	80.9
VEJ12440.1\|593431_594001_+	Uncharacterised protein	A0A1B0RXB3	Streptococcus_phage	1.1e-86	81.0
VEJ12441.1\|594039_595995_-	FIG006036: phage encoded DNA polymerase I	D0R0B0	Streptococcus_phage	0.0e+00	83.6
VEJ12442.1\|596044_596209_-	Uncharacterised protein	NA	NA	NA	NA
VEJ12443.1\|596225_596789_-	Phage protein	A0A1B0RXA9	Streptococcus_phage	3.3e-91	93.4
VEJ12444.1\|596793_597915_-	Phage protein	A0A1X9I6D8	Streptococcus_phage	8.0e-198	88.5
VEJ12445.1\|597907_598231_-	Uncharacterised protein	A0A1B0RXB7	Streptococcus_phage	2.0e-32	71.2
VEJ12446.1\|598205_598340_-	Uncharacterised protein	Q6DMW0	Streptococcus_phage	2.1e-12	86.4
VEJ12447.1\|598627_600907_+	DNA primase/helicase, phage-associated	M1NSF0	Streptococcus_phage	0.0e+00	80.7
VEJ12448.1\|601257_601539_+	Phage protein	M1PFY8	Streptococcus_phage	5.5e-39	82.8
VEJ12449.1\|601519_602896_+	DNA helicase, phage-associated	A0A1X9I6B0	Streptococcus_phage	5.3e-228	84.5
VEJ12450.1\|602888_603398_+	uncharacterised phage protein	Q6DMV6	Streptococcus_phage	1.4e-45	54.5
VEJ12451.1\|603565_603760_+	Uncharacterised protein	A0A1B0RXC3	Streptococcus_phage	6.1e-21	86.7
VEJ12452.1\|603807_604845_+	S-adenosylmethionine synthetase	E4ZFL0	Streptococcus_phage	8.8e-167	84.3
VEJ12453.1\|605500_605956_+	zinc-finger protein	A0A1B0RXC6	Streptococcus_phage	5.4e-44	51.0
VEJ12454.1\|605927_607184_+	Adenine-specific methyltransferase	E4ZFL4	Streptococcus_phage	3.7e-220	88.7
VEJ12455.1\|607180_608434_+	DNA methylase	M1NSK8	Streptococcus_phage	3.6e-231	93.5
VEJ12456.1\|608776_609226_+	Uncharacterised protein	E4ZFL7	Streptococcus_phage	1.8e-15	63.6
VEJ12457.1\|609277_609751_+\|terminase	P27 family phage terminase small subunit	A0A1X9I6K0	Streptococcus_phage	2.3e-85	96.8
VEJ12458.1\|609747_611340_+\|terminase	Phage terminase large subunit	A0A1B0RXJ8	Streptococcus_phage	2.5e-306	95.5
VEJ12459.1\|611410_611668_+	cytoplasmic protein	E4ZFM1	Streptococcus_phage	1.2e-35	95.3
VEJ12460.1\|611664_612036_+	Death on curing protein, Doc toxin	A0A1X9I6C0	Streptococcus_phage	1.2e-57	89.4
VEJ12461.1\|612061_612388_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12462.1\|612455_613532_+\|portal	prophage LambdaSa04, HK97 family portal protein	D0R0D3	Streptococcus_phage	3.0e-186	92.0
VEJ12463.1\|613528_613744_+\|portal	prophage LambdaSa04, HK97 family portal protein	E4ZFM3	Streptococcus_phage	2.9e-24	81.7
VEJ12464.1\|613736_614435_+\|protease	Prophage Clp protease-like protein	A0A1B0RXE1	Streptococcus_phage	3.8e-105	83.2
VEJ12465.1\|614448_615657_+\|capsid	Phage major capsid protein	M1Q1R5	Streptococcus_phage	4.0e-211	90.8
VEJ12466.1\|615653_615911_+	uncharacterised phage protein	D0R0D7	Streptococcus_phage	9.5e-30	77.6
VEJ12467.1\|615910_616249_+\|head,tail	Bacteriophage head-tail adaptor	A0A1B0RXE4	Streptococcus_phage	4.7e-37	68.8
VEJ12468.1\|616241_616610_+	prophage pi2 protein 37	Q6DMT7	Streptococcus_phage	1.0e-32	62.1
VEJ12469.1\|616618_616945_+	prophage pi2 protein 38	M1Q1Z4	Streptococcus_phage	2.4e-38	68.5
VEJ12470.1\|616947_617517_+	Prophage pi2 protein 39	A0A1B0RXE2	Streptococcus_phage	3.6e-98	95.2
VEJ12471.1\|617528_617948_+	prophage pi2 protein 40	A0A1X9I691	Streptococcus_phage	9.7e-56	76.3
VEJ12472.1\|618242_621362_+\|tail	Phage tail length tape-measure protein	Q6DMT2	Streptococcus_phage	5.8e-254	77.1
VEJ12473.1\|621358_622084_+	Uncharacterised protein	M1Q107	Streptococcus_phage	1.6e-82	61.1
VEJ12474.1\|622083_624999_+	prophage minor structural protein	Q6DMT0	Streptococcus_phage	0.0e+00	64.1
VEJ12475.1\|625011_626868_+	Phage structural protein	Q6DMS9	Streptococcus_phage	1.0e-258	73.1
VEJ12476.1\|626885_627284_+\|lysis	Holin, toxin secretion/phage lysis	D0R0E9	Streptococcus_phage	5.1e-38	60.8
VEJ12477.1\|627285_628692_+	Phage-associated cell wall hydrolase	A0A1B0RXL4	Streptococcus_phage	2.4e-106	63.1
VEJ12478.1\|629242_630484_+	Recombinase	A0A1X9I6J1	Streptococcus_phage	7.8e-170	69.2
VEJ12479.1\|630446_631733_+	prophage LambdaSa04, site-specific recombinase resolvase	E4ZFN9	Streptococcus_phage	1.2e-194	79.8
VEJ12480.1\|631802_632576_+	Uncharacterised protein	NA	NA	NA	NA
VEJ12481.1\|632589_634095_+	serine/threonine protein kinase	A0A0G2YBE6	Acanthamoeba_polyphaga_mimivirus	3.8e-09	25.1

DBSCAN-SWA_4

1505511 : 1516245

Streptococcus_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ13293.1\|1505511_1506339_+	Exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	5.1e-125	78.4
VEJ13294.1\|1506379_1506736_-	Arsenate reductase	M1PLC0	Streptococcus_phage	5.2e-42	72.6
VEJ13295.1\|1506737_1507214_-	Methylated-DNA--protein-cysteine methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
VEJ13296.1\|1507270_1508452_-	D-3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	1.1e-168	75.3
VEJ13297.1\|1508514_1509063_-	Acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
VEJ13298.1\|1509130_1510222_-	Phosphoserine aminotransferase	M1Q1P2	Streptococcus_phage	1.7e-165	78.0
VEJ13299.1\|1510354_1510990_+	Cytoplasmic copper homeostasis protein CutC	NA	NA	NA	NA
VEJ13300.1\|1511259_1512123_-	rRNA small subunit methyltransferase I	M1PLC5	Streptococcus_phage	4.8e-110	70.7
VEJ13301.1\|1512128_1512455_-	DNA replication intiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
VEJ13302.1\|1512485_1513349_-	DNA polymerase III delta prime subunit	M1NSC1	Streptococcus_phage	2.5e-74	50.0
VEJ13303.1\|1513368_1514004_-	Thymidylate kinase	M1PSC7	Streptococcus_phage	1.4e-66	60.1
VEJ13304.1\|1514092_1514752_-	Acetoin utilization acuB protein	M1NSC5	Streptococcus_phage	4.7e-65	56.5
VEJ13305.1\|1514770_1515481_-	ABC transporter ATP-binding protein; Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)	G9BWD6	Planktothrix_phage	2.7e-18	28.1
VEJ13306.1\|1515480_1516245_-	Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)	A0A2H4PQG7	Staphylococcus_phage	2.6e-14	24.8

DBSCAN-SWA_5

2002155 : 2009329

Staphylococcus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ13791.1\|2002155_2002803_-	immunodominant antigen A	Q4Z8Z7	Staphylococcus_phage	6.5e-27	54.3
VEJ13792.1\|2002935_2003475_-	Aggregation promoting factor	A0A249XZV3	Enterococcus_phage	1.3e-17	46.4
VEJ13793.1\|2003690_2004485_-	Transmembrane component of general energizing module of ECF transporters	NA	NA	NA	NA
VEJ13794.1\|2004477_2005320_-	ATPase component of general energizing module of ECF transporters	A0A2H4PQG7	Staphylococcus_phage	2.0e-15	28.5
VEJ13795.1\|2005295_2006135_-	ATPase component of general energizing module of ECF transporters	G9BWD6	Planktothrix_phage	3.5e-20	30.0
VEJ13796.1\|2006134_2006698_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
VEJ13797.1\|2006799_2008083_-	FIG009210: peptidase, M16 family	A0A2H4UVM3	Bodo_saltans_virus	1.6e-05	23.6
VEJ13798.1\|2008084_2009329_-\|protease	FIG001621: Zinc protease	A0A1X9I714	Streptococcus_phage	3.7e-87	41.3

Anti-CRISPR protein detection

Acr_ID: LR134512.1|VEJ12098.1|232847_233174_+|replication-initiation-factor

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR134512.1|VEJ12098.1|232847_233174_+|replication-initiation-factor

232847_233174_+

108 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|63	1.0	1	1.0

196955-246405

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134512

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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