CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134520	Streptococcus agalactiae strain NCTC13947 genome assembly, chromosome: 1	1 crisprs	DEDDh,csm6,csn2,cas2,cas1,cas9,DinG,cas3,csa3	0	14	6	1

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CRISPR-Cas detection and classification

Crispr_ID: LR134520_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134520_3

1199105-1200327

TypeII

II-A

Consensus_repeat	Method
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR

18 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LR134520_3

>merge|LR134520|3|1199105-1200327|CRT,CRISPRCasFinder,PILER-CR
TGATGTCCTAGCATAATAACAGCACAGCTCTAAAACTATCCATCTCGGTGAGATGAGAATTAGCTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAAATTCCGTCATCTTCAATTCGTCAAGTAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTGCCTTTGAGATAATACCATTTTTCGCCAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACATATCCTTTTGTTAGGTCAAAAGAAGATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACTCACAACCATAATTGAGATATTTATATAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCGCTGGCGTAGGATCGCTAATGATGTAGATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATGAAGTTGAGATTCATTCTGGTCAACTGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATCAAAATCAGAATCTAACAAACGTGAAGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACACTTTCTAAAAACAGTTAAGTGGGAAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACTGTCTTAGTGACTTTACGAGTAACAGGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCTATCCTCATAAACCTGTCTTATATAGCCGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTACTCTTCCCTTCCAAAGAGCTTTCCAAAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTATTTTTTATTAAGTTTAGCTTTTTTACTAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGTTTATATTGTTTATTATCATAATAAGCCTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGACAGTAATTGGAAAGAAGGGACAGGAGGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCCTTCAGGATAACGTCATAAGGAAGAACCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGACGACTGTTCCGACTGTCAATCAATTTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATACAATCAATGACACGTTTACGACGTTTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>LR134520|3|2|1199105-1200327|CRT
TGATGTCCTAGCATAATAACAGCACAGCTCTAAAAC	TATCCATCTCGGTGAGATGAGAATTAGCTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAAATTCCGTCATCTTCAATTCGTCAAGTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTGCCTTTGAGATAATACCATTTTTCGCCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACATATCCTTTTGTTAGGTCAAAAGAAGAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTCACAACCATAATTGAGATATTTATATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGCTGGCGTAGGATCGCTAATGATGTAGAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATGAAGTTGAGATTCATTCTGGTCAACTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCAAAATCAGAATCTAACAAACGTGAAGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACACTTTCTAAAAACAGTTAAGTGGGAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTGTCTTAGTGACTTTACGAGTAACAGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTATCCTCATAAACCTGTCTTATATAGCCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACTCTTCCCTTCCAAAGAGCTTTCCAAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTTTTTATTAAGTTTAGCTTTTTTACTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTTTATATTGTTTATTATCATAATAAGCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GACAGTAATTGGAAAGAAGGGACAGGAGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCCTTCAGGATAACGTCATAAGGAAGAACC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACGACTGTTCCGACTGTCAATCAATTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATACAATCAATGACACGTTTACGACGTTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>LR134520|3|2|1199171-1200327|CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAAATTCCGTCATCTTCAATTCGTCAAGTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTGCCTTTGAGATAATACCATTTTTCGCCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACATATCCTTTTGTTAGGTCAAAAGAAGAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTCACAACCATAATTGAGATATTTATATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGCTGGCGTAGGATCGCTAATGATGTAGAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATGAAGTTGAGATTCATTCTGGTCAACTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCAAAATCAGAATCTAACAAACGTGAAGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACACTTTCTAAAAACAGTTAAGTGGGAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTGTCTTAGTGACTTTACGAGTAACAGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTATCCTCATAAACCTGTCTTATATAGCCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACTCTTCCCTTCCAAAGAGCTTTCCAAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTTTTTATTAAGTTTAGCTTTTTTACTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTTTATATTGTTTATTATCATAATAAGCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GACAGTAATTGGAAAGAAGGGACAGGAGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCCTTCAGGATAACGTCATAAGGAAGAACC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACGACTGTTCCGACTGTCAATCAATTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATACAATCAATGACACGTTTACGACGTTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>LR134520|3|1|1199237-1200327|PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTGCCTTTGAGATAATACCATTTTTCGCCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACATATCCTTTTGTTAGGTCAAAAGAAGAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTCACAACCATAATTGAGATATTTATATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGCTGGCGTAGGATCGCTAATGATGTAGAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATGAAGTTGAGATTCATTCTGGTCAACTGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATCAAAATCAGAATCTAACAAACGTGAAGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACACTTTCTAAAAACAGTTAAGTGGGAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTGTCTTAGTGACTTTACGAGTAACAGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTATCCTCATAAACCTGTCTTATATAGCCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TACTCTTCCCTTCCAAAGAGCTTTCCAAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTTTTTATTAAGTTTAGCTTTTTTACTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTTTATATTGTTTATTATCATAATAAGCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GACAGTAATTGGAAAGAAGGGACAGGAGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCCTTCAGGATAACGTCATAAGGAAGAACC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACGACTGTTCCGACTGTCAATCAATTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATACAATCAATGACACGTTTACGACGTTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134520.1\|VEJ27924.1\|1192623_1193283_-\|HD-domain-protein	unknown	unknown	gnl\|CDD\|224336
LR134520.1\|VEJ27918.1\|1185588_1186200_-\|Immunoreactive-protein-Se23.5-(Fragment)	unknown	unknown	gnl\|CDD\|223475
LR134520.1\|VEJ27935.1\|1208946_1210077_-\|coproporphyrinogen-III-oxidase-(HemN)	unknown	unknown	gnl\|CDD\|236309
LR134520.1\|VEJ27930.1\|1201417_1202287_-\|CRISPR-associated-protein-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
LR134520.1\|VEJ27928.1\|1200427_1201093_-\|CRISPR-associated-protein,-Csn2-family	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
LR134520.1\|VEJ27932.1\|1206788_1207445_-\|COG4478,-integral-membrane-protein	unknown	unknown	gnl\|CDD\|226884
LR134520.1\|VEJ27929.1\|1201079_1201421_-\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134520.1\|VEJ27922.1\|1191716_1192151_-\|Peptide-methionine-sulfoxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
LR134520.1\|VEJ27923.1\|1192150_1192615_-\|Acetyltransferase,-GNAT-family	unknown	unknown	gnl\|CDD\|366181
LR134520.1\|VEJ27937.1\|1210573_1210945_-\|Probable-type-II-DNA-modification-enzyme	unknown	unknown	gnl\|CDD\|377982
LR134520.1\|VEJ27921.1\|1188772_1191565_-\|Cation-transporting-ATPase,-E1-E2-family	unknown	unknown	gnl\|CDD\|223550
LR134520.1\|VEJ27934.1\|1208205_1208943_-\|Acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
LR134520.1\|VEJ27931.1\|1202288_1206401_-\|CRISPR-associated-protein,-Csn1-family	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
LR134520.1\|VEJ27927.1\|1198130_1198547_-\|Nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
LR134520.1\|VEJ27920.1\|1187669_1188773_-\|Protein-of-uncharacterised-function-(DUF2974)	unknown	unknown	gnl\|CDD\|371412
LR134520.1\|VEJ27925.1\|1193382_1195542_-\|internalin,-putative	unknown	unknown	gnl\|CDD\|380193
LR134520.1\|VEJ27936.1\|1210168_1210549_-\|Pyrimidine-dimer-DNA-glycosylase	unknown	unknown	gnl\|CDD\|131381
LR134520.1\|VEJ27933.1\|1207434_1208205_-\|Hypothetical-NagD-like-phosphatase	unknown	unknown	gnl\|CDD\|319832
LR134520.1\|VEJ27919.1\|1186910_1187549_+\|chloramphenicol-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
LR134520.1\|VEJ27926.1\|1196162_1197995_-\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462

Protein	Function_ID	Function_description	E-value
LR134520.1\|VEJ27924.1\|1192623_1193283_-\|HD-domain-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	2.66997e-33
LR134520.1\|VEJ27918.1\|1185588_1186200_-\|Immunoreactive-protein-Se23.5-(Fragment)	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	6.1265e-31
LR134520.1\|VEJ27935.1\|1208946_1210077_-\|coproporphyrinogen-III-oxidase-(HemN)	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
LR134520.1\|VEJ27930.1\|1201417_1202287_-\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
LR134520.1\|VEJ27928.1\|1200427_1201093_-\|CRISPR-associated-protein,-Csn2-family	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
LR134520.1\|VEJ27932.1\|1206788_1207445_-\|COG4478,-integral-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
LR134520.1\|VEJ27929.1\|1201079_1201421_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
LR134520.1\|VEJ27922.1\|1191716_1192151_-\|Peptide-methionine-sulfoxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
LR134520.1\|VEJ27923.1\|1192150_1192615_-\|Acetyltransferase,-GNAT-family	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91796e-19
LR134520.1\|VEJ27937.1\|1210573_1210945_-\|Probable-type-II-DNA-modification-enzyme	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
LR134520.1\|VEJ27921.1\|1188772_1191565_-\|Cation-transporting-ATPase,-E1-E2-family	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
LR134520.1\|VEJ27934.1\|1208205_1208943_-\|Acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
LR134520.1\|VEJ27931.1\|1202288_1206401_-\|CRISPR-associated-protein,-Csn1-family	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
LR134520.1\|VEJ27927.1\|1198130_1198547_-\|Nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
LR134520.1\|VEJ27920.1\|1187669_1188773_-\|Protein-of-uncharacterised-function-(DUF2974)	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.82724e-105
LR134520.1\|VEJ27925.1\|1193382_1195542_-\|internalin,-putative	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	1.27191e-21
LR134520.1\|VEJ27936.1\|1210168_1210549_-\|Pyrimidine-dimer-DNA-glycosylase	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
LR134520.1\|VEJ27933.1\|1207434_1208205_-\|Hypothetical-NagD-like-phosphatase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
LR134520.1\|VEJ27919.1\|1186910_1187549_+\|chloramphenicol-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	6.8383e-72
LR134520.1\|VEJ27926.1\|1196162_1197995_-\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0

>LR134520.1|VEJ27927.1|1198130_1198547_-|Nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>LR134520.1|VEJ27926.1|1196162_1197995_-|GTP-binding-protein-LepA
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>LR134520.1|VEJ27925.1|1193382_1195542_-|internalin,-putative
MVRHGDHFHYIPKASLSQQKQVQASRAVSRLGNQSNSHYRVNSSKIAGLHYPTSNGFLFNGRGIKGTTPTGILVEHHNHLHFISFADLRKGGWGSIADRYQPQKKADSKKQSPSSKKPRTENTLPKDIKDKLAYLARELHLDISRIRVLKTLNGEIGFEYPHDDHTHVIMAKDIDLSKPIPNPHHDDEDHHKGHHHDESDHKHEEHEHTKSNKLSDEDQKKLIYLAEKLGLNPNQIEVLTSEDGSIIFKYPHDDHSHTIASKDIEIGKPIPDGHHDHSHAKDKVGMATLKQIGFDDEIIQDILHADAPTPFPSNETNPEKMRQWLATVTKINIGQRTNPFQRFGLSLMPNIEVLGIGFTPINDMTPVLQFKKLKQLWMTNTGITDYSFLDKMPLLEGLDISQNGIKDLSFLTKYKQLSLIAAANNGITSLKPLAELPNLQFLVLSHNNISDLTPLSNLTKLQELHLDHNNVKNLSALSGKKDLKVLDLSNNKSADLSTLKTTSLETLLLNETNTSNLSFLKQNPKVSNLTINNAKLASLDGIEESDEIVKVEAEGNQIKSLVLKNKQGSLKFLNVTNNQLTSLEGVNNYTSLETLSVSKNKLESLDIKTPNKTVTNLDFSHNNVPTSQLKLNEKNIPEAVAKNFPAVVEGSMVGNGSLAEKAAMASKEDKQVSDNTNHQKNTEKSAQANADSKKENPKTHDEHHDHEETDHAHVGHHHH
>LR134520.1|VEJ27924.1|1192623_1193283_-|HD-domain-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANTFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILENISFKAGTGLTMKTLEGQIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>LR134520.1|VEJ27923.1|1192150_1192615_-|Acetyltransferase,-GNAT-family
MIRRAKEKDLPDIAELLKQILMLHHEVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>LR134520.1|VEJ27922.1|1191716_1192151_-|Peptide-methionine-sulfoxide-reductase-MsrB
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>LR134520.1|VEJ27921.1|1188772_1191565_-|Cation-transporting-ATPase,-E1-E2-family
MASTNNVSDTNTRFAKEELEEVFEELGTTQGGLSDEEVAVRQKKYGLNLLSEVKQESIILLFLKNFTSLMAILLWVGGFVAIVSNSLELGLAIWMVNVINGIFSFIQEYRASQATQALEKMLPSYSRVLRKSSEEKILSEQLVPGDIVLIEEGDRISADGRLIKTTDLQVNQSALTGESNPIYKDSNVENDQSKTLIECDNMVFAGTTVSSGSATMVVTAIGMQTQFGQIADLTQGMKSEKSPLQRELDRLTKQISIISITVGIIFFLAATFFVKEPVSKSFIFALGMIVAFIPEGLLPTVTLSLAMAVQRMAKEHALVKKLSSVETLGATSVICSDKTGTLTQNEMTVNHLWQNGKSYQVTGLGYAPEGQILFEGDNICFGNSDRGDLEKLIRFAHLCSNAQVLPPNDDRSTYTVLGDPTEACLNVLLEKSGINIQENRKFAPRLKELPFDSVRKRMTTIHSLGGDEKDKKISITKGAPKEILDLSDYVLSDGKVIPLNKEERNKIQLANDTFAKDGLRVLAVSYCDIEGFSKEQWTQENLEQHMVFIGLIAMSDPPREGVREAIDKCHAASIRIIMVTGDYGLTALSIAKNIGIIRNDDAKVISGLELSEMTDSQLKKELSGEVVFARVAPEQKYRVVTILQEMGEVVAVTGDGVNDAPALKKSDIGVAMGVTGTDVAKESADMILTDDHFASIVHAVEEGRAVYQNIKKFLTYIFNSNTPEAVPSAFFLFSKGFIPLPLTVMQILAVDLGTDMLPALGLGVEPPETDVMNRPPRRLTDRLLDKGLLIKSFLWYGTIESVLAMGGFFWAHYLRYGNFTFFVANGIPYREATTMTLGAIIFSQIGMVMNSRTSYQSIKALSIFGNKLINFGIIMEILAFLVLVYVPLFHNLFNTASLGLSHWLYLISCPFIMIGLDEVRKLFSSRKNKR
>LR134520.1|VEJ27920.1|1187669_1188773_-|Protein-of-uncharacterised-function-(DUF2974)
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEISLEFEKQFAAMVFTIPNINYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGTGLSLKSICFEKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRETK
>LR134520.1|VEJ27919.1|1186910_1187549_+|chloramphenicol-acetyltransferase
MASILKKHLEKRLELKNDPMRTDMSTGASYPKYGFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTITGLNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYAVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
>LR134520.1|VEJ27918.1|1185588_1186200_-|Immunoreactive-protein-Se23.5-(Fragment)
MNMKLSKRYRFWQKVIKALGVLALIATLVLVVYLYKLGILNDSNELKDLVHKYEFWGPMIFIVAQIVQIVFPVIPGGVTTVAGFLIFGPTLGFIYNYIGIIIGSVILFWLVKFYGRKFVLLFMDQKTFDKYESKLETSGYEKFFIFCMASPISPADIMVMITGLSNMSIKRFVTIIMITKPISIIGYSYLWIYGGDILKNFLN
>LR134520.1|VEJ27928.1|1200427_1201093_-|CRISPR-associated-protein,-Csn2-family
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>LR134520.1|VEJ27929.1|1201079_1201421_-|CRISPR-associated-protein-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>LR134520.1|VEJ27930.1|1201417_1202287_-|CRISPR-associated-protein-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>LR134520.1|VEJ27931.1|1202288_1206401_-|CRISPR-associated-protein,-Csn1-family
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTTFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>LR134520.1|VEJ27932.1|1206788_1207445_-|COG4478,-integral-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>LR134520.1|VEJ27933.1|1207434_1208205_-|Hypothetical-NagD-like-phosphatase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>LR134520.1|VEJ27934.1|1208205_1208943_-|Acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>LR134520.1|VEJ27935.1|1208946_1210077_-|coproporphyrinogen-III-oxidase-(HemN)
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>LR134520.1|VEJ27936.1|1210168_1210549_-|Pyrimidine-dimer-DNA-glycosylase
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>LR134520.1|VEJ27937.1|1210573_1210945_-|Probable-type-II-DNA-modification-enzyme
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134520_3	3.5\|1199405\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199405-1199434	30	MK448781	Streptococcus phage Javan5, complete genome	11037-11066	0	1.0
LR134520_3	3.5\|1199405\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199405-1199434	30	MK448731	Streptococcus phage Javan33, complete genome	13403-13432	0	1.0
LR134520_3	3.5\|1199405\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199405-1199434	30	MK448888	Streptococcus phage Javan26, complete genome	11375-11404	0	1.0
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	JX409894	Streptococcus phage LYGO9, complete genome	32575-32604	0	1.0
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	JX409895	Streptococcus phage JX01, complete genome	1393-1422	0	1.0
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MH853356	Streptococcus phage LF2, partial genome	2210-2239	0	1.0
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448796	Streptococcus phage Javan53, complete genome	18621-18650	0	1.0
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448971	Streptococcus phage Javan52, complete genome	16816-16845	0	1.0
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448749	Streptococcus phage Javan39, complete genome	15790-15819	0	1.0
LR134520_3	3.7\|1199537\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199537-1199566	30	MK448742	Streptococcus phage Javan37, complete genome	13332-13361	0	1.0
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MK448736	Streptococcus phage Javan35, complete genome	34728-34757	0	1.0
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MK448956	Streptococcus phage Javan48, complete genome	37537-37566	0	1.0
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MK448781	Streptococcus phage Javan5, complete genome	36750-36779	0	1.0
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MK448749	Streptococcus phage Javan39, complete genome	39119-39148	0	1.0
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MK448938	Streptococcus phage Javan44, complete genome	34729-34758	0	1.0
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MK448911	Streptococcus phage Javan34, complete genome	34728-34757	0	1.0
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MK448742	Streptococcus phage Javan37, complete genome	34259-34288	0	1.0
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MK448916	Streptococcus phage Javan36, complete genome	34728-34757	0	1.0
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MK448669	Streptococcus phage Javan11, complete genome	34428-34457	0	1.0
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MK448708	Streptococcus phage Javan23, complete genome	36747-36776	0	1.0
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MK448897	Streptococcus phage Javan28, complete genome	36748-36777	0	1.0
LR134520_3	3.17\|1200196\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1200196-1200225	30	NZ_CP035140	Leuconostoc mesenteroides strain SRCM103356 plasmid unnamed1, complete sequence	15602-15631	0	1.0
LR134520_3	3.17\|1200196\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1200196-1200225	30	NZ_CP028268	Pediococcus pentosaceus strain SRCM102739 plasmid unnamed2, complete sequence	19835-19864	0	1.0
LR134520_3	3.17\|1200196\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1200196-1200225	30	NC_018699	Leuconostoc carnosum JB16 plasmid pKLC4, complete sequence	33863-33892	0	1.0
LR134520_3	3.9\|1199669\|29\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199669-1199697	29	NZ_CP032753	Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed2, complete sequence	40594-40622	1	0.966
LR134520_3	3.10\|1199734\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199734-1199763	30	JX409894	Streptococcus phage LYGO9, complete genome	15324-15353	1	0.967
LR134520_3	3.10\|1199734\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199734-1199763	30	MK448749	Streptococcus phage Javan39, complete genome	33063-33092	1	0.967
LR134520_3	3.10\|1199734\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199734-1199763	30	JX409895	Streptococcus phage JX01, complete genome	27171-27200	1	0.967
LR134520_3	3.10\|1199734\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199734-1199763	30	MH853356	Streptococcus phage LF2, partial genome	29915-29944	1	0.967
LR134520_3	3.17\|1200196\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1200196-1200225	30	NZ_CP035749	Leuconostoc mesenteroides strain SRCM103460 plasmid unnamed3, complete sequence	13774-13803	1	0.967
LR134520_3	3.17\|1200196\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1200196-1200225	30	NZ_CP028257	Leuconostoc mesenteroides strain SRCM102735 plasmid unnamed2, complete sequence	13720-13749	1	0.967
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448960	Streptococcus phage Javan492, complete genome	13224-13253	2	0.933
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448762	Streptococcus phage Javan447, complete genome	13351-13380	2	0.933
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448798	Streptococcus phage Javan533, complete genome	14106-14135	2	0.933
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448775	Streptococcus phage Javan489, complete genome	13927-13956	2	0.933
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448794	Streptococcus phage Javan525, complete genome	12124-12153	2	0.933
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448953	Streptococcus phage Javan474, complete genome	16721-16750	2	0.933
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448944	Streptococcus phage Javan452, complete genome	14303-14332	2	0.933
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448793	Streptococcus phage Javan523, complete genome	14063-14092	2	0.933
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448967	Streptococcus phage Javan510, complete genome	14107-14136	2	0.933
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448851	Streptococcus phage Javan14, complete genome	16139-16168	2	0.933
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	MK448765	Streptococcus phage Javan459, complete genome	12123-12152	2	0.933
LR134520_3	3.6\|1199471\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199471-1199500	30	NC_004588	Streptococcus prophage 315.5, complete genome	14256-14285	2	0.933
LR134520_3	3.17\|1200196\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1200196-1200225	30	NZ_LN890333	Leuconostoc gelidum subsp. gasicomitatum KG16-1 isolate LEKG1 plasmid III, complete sequence	17480-17509	2	0.933
LR134520_3	3.18\|1200262\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1200262-1200291	30	MK448878	Streptococcus phage Javan224, complete genome	4338-4367	2	0.933
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_CP025504	Clostridium perfringens strain EHE-NE18 plasmid pJIR3537, complete sequence	12091-12120	5	0.833
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_KT020842	Clostridium perfringens strain JP838 plasmid pJP838B, complete sequence	23829-23858	5	0.833
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NC_010937	Clostridium perfringens plasmid pCW3, complete sequence	8885-8914	5	0.833
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NC_019259	Clostridium perfringens plasmid pJIR3537, complete sequence	48378-48407	5	0.833
LR134520_3	3.11\|1199800\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199800-1199829	30	MN034306	Leviviridae sp. isolate H4_Bulk_47_scaffold_296 RNA-dependent RNA polymerase (H4Bulk47296_000001), hypothetical protein (H4Bulk47296_000002), and hypothetical protein (H4Bulk47296_000003) genes, complete cds	386-415	6	0.8
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	LR214966	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12	30027-30056	6	0.8
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	203796-203825	6	0.8
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NC_015712	Clostridium perfringens plasmid pCPPB-1, complete sequence	10513-10542	6	0.8
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NC_006872	Clostridium perfringens plasmid pBCNF5603 DNA, complete sequence	13027-13056	6	0.8
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NC_003042	Clostridium perfringens str. 13 plasmid pCP13, complete sequence	30155-30184	6	0.8
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NC_023917	Clostridium perfringens plasmid pCP-OS1 DNA, complete sequence, strain: OS1	30368-30397	6	0.8
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NC_023918	Clostridium perfringens plasmid pCP-TS1 DNA, complete sequence, strain: TS1	30350-30379	6	0.8
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_MK275619	Clostridium perfringens strain JXJA17 plasmid p1, complete sequence	5038-5067	6	0.8
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_LN614828	Legionella fallonii LLAP-10 plasmid II, complete sequence	6552-6581	6	0.8
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP021170	Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence	42386-42415	6	0.8
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	MN871480	UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome	167890-167919	6	0.8
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	MT133560	Pseudomonas phage fnug, complete genome	116367-116396	6	0.8
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	MN871489	UNVERIFIED: Pseudomonas phage PaZh_1, complete genome	199798-199827	6	0.8
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NC_042081	Pseudomonas phage SL2, complete genome	171019-171048	6	0.8
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	KU521356	Pseudomonas phage KTN4, complete genome	116471-116500	6	0.8
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NC_004629	Pseudomonas phage phiKZ, complete genome	115072-115101	6	0.8
LR134520_3	3.5\|1199405\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199405-1199434	30	NC_028958	Clostridium phage phiCD146, complete genome	38095-38124	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_LT598658	Legionella pneumophila strain Lpm7613 isolate Lpm7613 plasmid 2	15111-15140	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_LN681226	Legionella hackeliae strain ATCC 35250 plasmid II, complete sequence	103989-104018	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_CP021287	Legionella pneumophila subsp. pneumophila strain Albuquerque 1 (D-7474) plasmid unnamed, complete sequence	45412-45441	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NC_006365	Legionella pneumophila str. Paris plasmid pLPP, complete sequence	20641-20670	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_CP021282	Legionella pneumophila subsp. pneumophila strain Flint 2 (D-7477) plasmid unnamed, complete sequence	52909-52938	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_CP016031	Legionella pneumophila strain OLDA plasmid unnamed, complete sequence	73207-73236	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_CP013332	Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence	12964-12993	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_CP017721	Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 plasmid pCFSAN017963_01, complete sequence	198772-198801	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_CP047439	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence	37136-37165	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	62297-62326	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_CP053316	Bacillus circulans strain GN03 plasmid unnamed, complete sequence	49445-49474	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	MN693328	Marine virus AFVG_25M83, complete genome	15353-15382	7	0.767
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NC_015426	Clostridium botulinum BKT015925 plasmid p2BKT015925, complete sequence	85902-85931	7	0.767
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	36587-36616	7	0.767
LR134520_1	1.1\|116468\|36\|LR134520\|CRISPRCasFinder	116468-116503	36	NZ_CP016330	Leuconostoc garlicum strain KFRI01 plasmid unnamed1, complete sequence	1549-1584	8	0.778
LR134520_2	2.5\|167259\|30\|LR134520\|CRT	167259-167288	30	MN855875	Bacteriophage sp. isolate 328, complete genome	1401-1430	8	0.733
LR134520_3	3.3\|1199273\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199273-1199302	30	MK288022	Bacillus phage pW4, complete genome	27741-27770	8	0.733
LR134520_3	3.3\|1199273\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199273-1199302	30	KT070866	Bacillus phage PBC4, complete genome	15693-15722	8	0.733
LR134520_3	3.8\|1199603\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199603-1199632	30	MN694341	Marine virus AFVG_250M558, complete genome	802-831	8	0.733
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	835935-835964	8	0.733
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	69772-69801	8	0.733
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP018459	Klebsiella pneumoniae strain Kp_Goe_39795 plasmid pKp_Goe_795-4, complete sequence	10520-10549	8	0.733
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	556297-556326	8	0.733
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	84391-84420	8	0.733
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP010110	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-4, complete sequence	10362-10391	8	0.733
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	732058-732087	8	0.733
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	87615-87644	8	0.733
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	MN497415	Vibrio phage vB_VhaM_VH-8, complete genome	5685-5714	8	0.733
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	MK250029	Prevotella phage Lak-C1, complete genome	39407-39436	8	0.733
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	84623-84652	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	93778-93807	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	MK492260	Escherichia coli strain MG1655 K12 plasmid F-Tn10, complete sequence	14302-14331	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP027256	Escherichia coli strain EC11 plasmid unnamed1, complete sequence	46835-46864	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP022280	Escherichia coli strain STEC299 plasmid pSTEC299_1, complete sequence	135397-135426	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP009167	Escherichia coli 1303 plasmid p1303_109, complete sequence	13124-13153	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP010345	Escherichia coli ECC-1470 plasmid pECC-1470_100, complete sequence	7526-7555	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NC_002483	Escherichia coli K-12 plasmid F DNA, complete sequence	14302-14331	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP048440	Escherichia coli strain NBRC 3301 plasmid putative_pEcol1, complete sequence	22918-22947	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	85953-85982	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	66906-66935	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	KY065454	Streptococcus phage IPP12, complete genome	1785-1814	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	AP014198	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C73-MedDCM-OCT-S33-C13, * SEQUENCING IN PROGRESS *	16630-16659	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	KY065471	Streptococcus phage IPP30, complete genome	1784-1813	9	0.7
LR134520_3	3.14\|1199998\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199998-1200027	30	KY065461	Streptococcus phage IPP20, complete genome	1784-1813	9	0.7
LR134520_3	3.13\|1199932\|30\|LR134520\|CRT,CRISPRCasFinder,PILER-CR	1199932-1199961	30	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	340783-340812	10	0.667
LR134520_1	1.1\|116468\|36\|LR134520\|CRISPRCasFinder	116468-116503	36	MN150686	Bacillus phage BC-T25, complete genome	143504-143539	11	0.694
LR134520_1	1.1\|116468\|36\|LR134520\|CRISPRCasFinder	116468-116503	36	JQ340088	Halocynthia phage JM-2012, complete genome	25855-25890	11	0.694

1. spacer 3.5|1199405|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 0, identity: 1.0

actcacaaccataattgagatatttatata	CRISPR spacer
actcacaaccataattgagatatttatata	Protospacer
******************************

2. spacer 3.5|1199405|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448731 (Streptococcus phage Javan33, complete genome) position: , mismatch: 0, identity: 1.0

actcacaaccataattgagatatttatata	CRISPR spacer
actcacaaccataattgagatatttatata	Protospacer
******************************

3. spacer 3.5|1199405|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448888 (Streptococcus phage Javan26, complete genome) position: , mismatch: 0, identity: 1.0

actcacaaccataattgagatatttatata	CRISPR spacer
actcacaaccataattgagatatttatata	Protospacer
******************************

4. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 0, identity: 1.0

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgtaggatcgctaatgatgtagat	Protospacer
******************************

5. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 0, identity: 1.0

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgtaggatcgctaatgatgtagat	Protospacer
******************************

6. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 0, identity: 1.0

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgtaggatcgctaatgatgtagat	Protospacer
******************************

7. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 0, identity: 1.0

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgtaggatcgctaatgatgtagat	Protospacer
******************************

8. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 0, identity: 1.0

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgtaggatcgctaatgatgtagat	Protospacer
******************************

9. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgtaggatcgctaatgatgtagat	Protospacer
******************************

10. spacer 3.7|1199537|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 0, identity: 1.0

atgaagttgagattcattctggtcaactga	CRISPR spacer
atgaagttgagattcattctggtcaactga	Protospacer
******************************

11. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 0, identity: 1.0

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
atcaaaatcagaatctaacaaacgtgaaga	Protospacer
******************************

12. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 0, identity: 1.0

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
atcaaaatcagaatctaacaaacgtgaaga	Protospacer
******************************

13. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 0, identity: 1.0

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
atcaaaatcagaatctaacaaacgtgaaga	Protospacer
******************************

14. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 0, identity: 1.0

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
atcaaaatcagaatctaacaaacgtgaaga	Protospacer
******************************

15. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 0, identity: 1.0

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
atcaaaatcagaatctaacaaacgtgaaga	Protospacer
******************************

16. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 0, identity: 1.0

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
atcaaaatcagaatctaacaaacgtgaaga	Protospacer
******************************

17. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 0, identity: 1.0

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
atcaaaatcagaatctaacaaacgtgaaga	Protospacer
******************************

18. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 0, identity: 1.0

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
atcaaaatcagaatctaacaaacgtgaaga	Protospacer
******************************

19. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448669 (Streptococcus phage Javan11, complete genome) position: , mismatch: 0, identity: 1.0

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
atcaaaatcagaatctaacaaacgtgaaga	Protospacer
******************************

20. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448708 (Streptococcus phage Javan23, complete genome) position: , mismatch: 0, identity: 1.0

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
atcaaaatcagaatctaacaaacgtgaaga	Protospacer
******************************

21. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448897 (Streptococcus phage Javan28, complete genome) position: , mismatch: 0, identity: 1.0

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
atcaaaatcagaatctaacaaacgtgaaga	Protospacer
******************************

22. spacer 3.17|1200196|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP035140 (Leuconostoc mesenteroides strain SRCM103356 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

agacgactgttccgactgtcaatcaatttt	CRISPR spacer
agacgactgttccgactgtcaatcaatttt	Protospacer
******************************

23. spacer 3.17|1200196|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP028268 (Pediococcus pentosaceus strain SRCM102739 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

agacgactgttccgactgtcaatcaatttt	CRISPR spacer
agacgactgttccgactgtcaatcaatttt	Protospacer
******************************

24. spacer 3.17|1200196|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_018699 (Leuconostoc carnosum JB16 plasmid pKLC4, complete sequence) position: , mismatch: 0, identity: 1.0

agacgactgttccgactgtcaatcaatttt	CRISPR spacer
agacgactgttccgactgtcaatcaatttt	Protospacer
******************************

25. spacer 3.9|1199669|29|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP032753 (Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.966

acactttctaaaaacagttaagtgggaag	CRISPR spacer
acactttttaaaaacagttaagtgggaag	Protospacer
*******.*********************

26. spacer 3.10|1199734|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 1, identity: 0.967

actgtcttagtgactttacgagtaacagga	CRISPR spacer
accgtcttagtgactttacgagtaacagga	Protospacer
**.***************************

27. spacer 3.10|1199734|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 1, identity: 0.967

actgtcttagtgactttacgagtaacagga	CRISPR spacer
actgtcttagtgactttacgtgtaacagga	Protospacer
******************** *********

28. spacer 3.10|1199734|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 1, identity: 0.967

actgtcttagtgactttacgagtaacagga	CRISPR spacer
accgtcttagtgactttacgagtaacagga	Protospacer
**.***************************

29. spacer 3.10|1199734|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 1, identity: 0.967

actgtcttagtgactttacgagtaacagga	CRISPR spacer
actgtcttagtgactttacgtgtaacagga	Protospacer
******************** *********

30. spacer 3.17|1200196|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP035749 (Leuconostoc mesenteroides strain SRCM103460 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.967

agacgactgttccgactgtcaatcaatttt	CRISPR spacer
agatgactgttccgactgtcaatcaatttt	Protospacer
***.**************************

31. spacer 3.17|1200196|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP028257 (Leuconostoc mesenteroides strain SRCM102735 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.967

agacgactgttccgactgtcaatcaatttt	CRISPR spacer
agatgactgttccgactgtcaatcaatttt	Protospacer
***.**************************

32. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgaaggatagctaatgatgtagat	Protospacer
******** ***** ***************

33. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgaaggatagctaatgatgtagat	Protospacer
******** ***** ***************

34. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgaaggatagctaatgatgtagat	Protospacer
******** ***** ***************

35. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcggaggatagctaatgatgtagat	Protospacer
******** ***** ***************

36. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcggaggatagctaatgatgtagat	Protospacer
******** ***** ***************

37. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgaaggatagctaatgatgtagat	Protospacer
******** ***** ***************

38. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcggaggatagctaatgatgtagat	Protospacer
******** ***** ***************

39. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcggaggatagctaatgatgtagat	Protospacer
******** ***** ***************

40. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgaaggatagctaatgatgtagat	Protospacer
******** ***** ***************

41. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcggaggatagctaatgatgtagat	Protospacer
******** ***** ***************

42. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcggaggatagctaatgatgtagat	Protospacer
******** ***** ***************

43. spacer 3.6|1199471|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 2, identity: 0.933

cgctggcgtaggatcgctaatgatgtagat	CRISPR spacer
cgctggcgaaggatagctaatgatgtagat	Protospacer
******** ***** ***************

44. spacer 3.17|1200196|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LN890333 (Leuconostoc gelidum subsp. gasicomitatum KG16-1 isolate LEKG1 plasmid III, complete sequence) position: , mismatch: 2, identity: 0.933

agacgactgttccgactgtcaatcaatttt	CRISPR spacer
agacgactgttccgattgccaatcaatttt	Protospacer
***************.**.***********

45. spacer 3.18|1200262|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK448878 (Streptococcus phage Javan224, complete genome) position: , mismatch: 2, identity: 0.933

atacaatcaatgacacgtttacgacgtttt	CRISPR spacer
atgcagtcaatgacacgtttacgacgtttt	Protospacer
**.**.************************

46. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP025504 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3537, complete sequence) position: , mismatch: 5, identity: 0.833

tattttttattaagtttagcttttttacta	CRISPR spacer
tattttttattaagtttatcttttcttaca	Protospacer
****************** *****.*  .*

47. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_KT020842 (Clostridium perfringens strain JP838 plasmid pJP838B, complete sequence) position: , mismatch: 5, identity: 0.833

tattttttattaagtttagcttttttacta	CRISPR spacer
tattttttattaagtttatcttttcttaca	Protospacer
****************** *****.*  .*

48. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_010937 (Clostridium perfringens plasmid pCW3, complete sequence) position: , mismatch: 5, identity: 0.833

tattttttattaagtttagcttttttacta	CRISPR spacer
tattttttattaagtttatcttttcttaca	Protospacer
****************** *****.*  .*

49. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_019259 (Clostridium perfringens plasmid pJIR3537, complete sequence) position: , mismatch: 5, identity: 0.833

tattttttattaagtttagcttttttacta	CRISPR spacer
tattttttattaagtttatcttttcttaca	Protospacer
****************** *****.*  .*

50. spacer 3.11|1199800|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MN034306 (Leviviridae sp. isolate H4_Bulk_47_scaffold_296 RNA-dependent RNA polymerase (H4Bulk47296_000001), hypothetical protein (H4Bulk47296_000002), and hypothetical protein (H4Bulk47296_000003) genes, complete cds) position: , mismatch: 6, identity: 0.8

-ctatcctcataaacctgtcttatatagccg	CRISPR spacer
agcattc-cataaacctgccttatatagcag	Protospacer
  .**.* **********.********** *

51. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to LR214966 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 12) position: , mismatch: 6, identity: 0.8

tattttttattaagtttagcttttttacta	CRISPR spacer
aaaattttattaattttagcttttttacat	Protospacer
 *  ********* **************

52. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 6, identity: 0.8

tattttttattaagtttagcttttttacta	CRISPR spacer
cttcatttattaaatttagtttttttacta	Protospacer
. *. ********.*****.**********

53. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_015712 (Clostridium perfringens plasmid pCPPB-1, complete sequence) position: , mismatch: 6, identity: 0.8

tattttttattaagtttagcttttttacta	CRISPR spacer
tactttttattaagtttatcttttcttaca	Protospacer
**.*************** *****.*  .*

54. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_006872 (Clostridium perfringens plasmid pBCNF5603 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

tattttttattaagtttagcttttttacta	CRISPR spacer
ttctttttattaagtttatctattttatca	Protospacer
* .*************** ** *****..*

55. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_003042 (Clostridium perfringens str. 13 plasmid pCP13, complete sequence) position: , mismatch: 6, identity: 0.8

tattttttattaagtttagcttttttacta	CRISPR spacer
ttctttttattaagtttatctattttatca	Protospacer
* .*************** ** *****..*

56. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_023917 (Clostridium perfringens plasmid pCP-OS1 DNA, complete sequence, strain: OS1) position: , mismatch: 6, identity: 0.8

tattttttattaagtttagcttttttacta	CRISPR spacer
ttctttttattaagtttatctattttatca	Protospacer
* .*************** ** *****..*

57. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_023918 (Clostridium perfringens plasmid pCP-TS1 DNA, complete sequence, strain: TS1) position: , mismatch: 6, identity: 0.8

tattttttattaagtttagcttttttacta	CRISPR spacer
ttctttttattaagtttatctattttatca	Protospacer
* .*************** ** *****..*

58. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_MK275619 (Clostridium perfringens strain JXJA17 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

tattttttattaagtttagcttttttacta	CRISPR spacer
ttctttttattaagtttatctattttatca	Protospacer
* .*************** ** *****..*

59. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LN614828 (Legionella fallonii LLAP-10 plasmid II, complete sequence) position: , mismatch: 6, identity: 0.8

gtttatattgtttattatcataataagcct	CRISPR spacer
ctctcttttgttgattatcataataagcca	Protospacer
 *.* * ***** ****************

60. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021170 (Paenibacillus bovis strain BD3526 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

gtttatattgtttattatcataataagcct	CRISPR spacer
aattatattgtttattctcacaataatcat	Protospacer
. ************** ***.***** * *

61. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MN871480 (UNVERIFIED: Pseudomonas phage PaSz-1_45_270k, complete genome) position: , mismatch: 6, identity: 0.8

gtttatattgtttattatcataataagcct	CRISPR spacer
gctaatattgtttattattagaataaggat	Protospacer
*.* **************.* ******  *

62. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MT133560 (Pseudomonas phage fnug, complete genome) position: , mismatch: 6, identity: 0.8

gtttatattgtttattatcataataagcct	CRISPR spacer
gctaatattgtttattattagaataaggat	Protospacer
*.* **************.* ******  *

63. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MN871489 (UNVERIFIED: Pseudomonas phage PaZh_1, complete genome) position: , mismatch: 6, identity: 0.8

gtttatattgtttattatcataataagcct	CRISPR spacer
gctaatattgtttattattagaataaggat	Protospacer
*.* **************.* ******  *

64. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_042081 (Pseudomonas phage SL2, complete genome) position: , mismatch: 6, identity: 0.8

gtttatattgtttattatcataataagcct	CRISPR spacer
gctaatattgtttattattagaataaggat	Protospacer
*.* **************.* ******  *

65. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to KU521356 (Pseudomonas phage KTN4, complete genome) position: , mismatch: 6, identity: 0.8

gtttatattgtttattatcataataagcct	CRISPR spacer
gctaatattgtttattattagaataaggat	Protospacer
*.* **************.* ******  *

66. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_004629 (Pseudomonas phage phiKZ, complete genome) position: , mismatch: 6, identity: 0.8

gtttatattgtttattatcataataagcct	CRISPR spacer
gctaatattgtttattattagaataaggat	Protospacer
*.* **************.* ******  *

67. spacer 3.5|1199405|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 7, identity: 0.767

actcacaaccataattgagatatttatata	CRISPR spacer
aaaaaataccataattgtgatatttttata	Protospacer
*   *  ********** ******* ****

68. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LT598658 (Legionella pneumophila strain Lpm7613 isolate Lpm7613 plasmid 2) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
gcactttgattaagattagcttttttactt	Protospacer
   .*** ****** **************

69. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LN681226 (Legionella hackeliae strain ATCC 35250 plasmid II, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
gcactttgattaagattagcttttttactt	Protospacer
   .*** ****** **************

70. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021287 (Legionella pneumophila subsp. pneumophila strain Albuquerque 1 (D-7474) plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
gcactttgattaagattagcttttttactt	Protospacer
   .*** ****** **************

71. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_006365 (Legionella pneumophila str. Paris plasmid pLPP, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
gcactttgattaagattagcttttttactt	Protospacer
   .*** ****** **************

72. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP021282 (Legionella pneumophila subsp. pneumophila strain Flint 2 (D-7477) plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
gcactttgattaagattagcttttttactt	Protospacer
   .*** ****** **************

73. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP016031 (Legionella pneumophila strain OLDA plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
gcactttgattaagattagcttttttactt	Protospacer
   .*** ****** **************

74. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013332 (Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
ctactgttattaattttagattttttacta	Protospacer
.  .* ******* ***** **********

75. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017721 (Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 plasmid pCFSAN017963_01, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
aattttttatttaatttagctttttaccgt	Protospacer
 ********** *.***********  *

76. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP047439 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
atatttttattaagtttatcttctttttta	Protospacer
   *************** ***.*** .**

77. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
atatttttattaagtttatcttctttttta	Protospacer
   *************** ***.*** .**

78. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP053316 (Bacillus circulans strain GN03 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
ttcattttattaagttcaacttttttagtc	Protospacer
* . ************.*.******** *

79. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MN693328 (Marine virus AFVG_25M83, complete genome) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
cattttttagtaagtttagctattcttttt	Protospacer
.******** *********** **.* .*

80. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_015426 (Clostridium botulinum BKT015925 plasmid p2BKT015925, complete sequence) position: , mismatch: 7, identity: 0.767

tattttttattaagtttagcttttttacta	CRISPR spacer
tttattttattaaatttaacttttttatct	Protospacer
* * *********.****.********..

81. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 7, identity: 0.767

gtttatattgtttattatcataataagcct	CRISPR spacer
gaagaagttgttttttatcataataatcct	Protospacer
*   * .****** ************ ***

82. spacer 1.1|116468|36|LR134520|CRISPRCasFinder matches to NZ_CP016330 (Leuconostoc garlicum strain KFRI01 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.778

gttaaagcagaccaagaagctaaagctaagcttgct	CRISPR spacer
gctaaagtagaacaagaagctaaagctaaagtagaa	Protospacer
*.*****.*** *****************. * *

83. spacer 2.5|167259|30|LR134520|CRT matches to MN855875 (Bacteriophage sp. isolate 328, complete genome) position: , mismatch: 8, identity: 0.733

ttaaaccagacgttaagccagaggccagac	CRISPR spacer
atggcgcagacgttgagccagaggccactc	Protospacer
 *..  ********.************  *

84. spacer 3.3|1199273|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK288022 (Bacillus phage pW4, complete genome) position: , mismatch: 8, identity: 0.733

ttgcctttgagataataccatttttcgcca	CRISPR spacer
ttgactttgagttaataccatttcaccttt	Protospacer
*** ******* ***********. * ..

85. spacer 3.3|1199273|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to KT070866 (Bacillus phage PBC4, complete genome) position: , mismatch: 8, identity: 0.733

ttgcctttgagataataccatttttcgcca	CRISPR spacer
ttgactttgagttaataccatttcaccttt	Protospacer
*** ******* ***********. * ..

86. spacer 3.8|1199603|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MN694341 (Marine virus AFVG_250M558, complete genome) position: , mismatch: 8, identity: 0.733

atcaaaatcagaatctaacaaacgtgaaga	CRISPR spacer
tgaagaatcagaatctaagaagcgtgaaac	Protospacer
   *.************* **.******.

87. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 8, identity: 0.733

tattttttattaagtttagcttttttacta	CRISPR spacer
attcttttattaaattttgcttttttagag	Protospacer
  *.*********.*** *********  .

88. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 8, identity: 0.733

tattttttattaagtttagcttttttacta	CRISPR spacer
tattttttatcaagtttagcattgcagttt	Protospacer
**********.********* ** . ..*

89. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018459 (Klebsiella pneumoniae strain Kp_Goe_39795 plasmid pKp_Goe_795-4, complete sequence) position: , mismatch: 8, identity: 0.733

gtttatattgtttattatcataataagcct	CRISPR spacer
aattttattgtttattatcataatgatagg	Protospacer
. ** *******************.*

90. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.733

gtttatattgtttattatcataataagcct	CRISPR spacer
atttattttatttattatcataatatataa	Protospacer
.***** **.*************** ..

91. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 8, identity: 0.733

gtttatattgtttattatcataataagcct	CRISPR spacer
tcatatattgtatatcatcataataactgt	Protospacer
 . ******** ***.********** . *

92. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP010110 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-4, complete sequence) position: , mismatch: 8, identity: 0.733

gtttatattgtttattatcataataagcct	CRISPR spacer
ttttatattgttcattatcatataagaatt	Protospacer
 ***********.*********  *.. .*

93. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 8, identity: 0.733

gtttatattgtttattatcataataagcct	CRISPR spacer
tcatatattgtttatcatcataacaactgt	Protospacer
 . ************.*******.** . *

94. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.733

gtttatattgtttattatcataataagcct	CRISPR spacer
tcatatattgtatatcatcataataactgt	Protospacer
 . ******** ***.********** . *

95. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MN497415 (Vibrio phage vB_VhaM_VH-8, complete genome) position: , mismatch: 8, identity: 0.733

gtttatattgtttattatcataataagcct	CRISPR spacer
atttatattatttattatcattatgcaatt	Protospacer
.********.*********** **. . .*

96. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 8, identity: 0.733

gtttatattgtttattatcataataagcct	CRISPR spacer
aatataattgtttaatatcataataagagt	Protospacer
. *   ******** ************  *

97. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
gtttatattgtttattataatgaatgctgc	Protospacer
****************** **.*  . . .

98. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
gtttatattgtttattataatgaatgctgc	Protospacer
****************** **.*  . . .

99. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to MK492260 (Escherichia coli strain MG1655 K12 plasmid F-Tn10, complete sequence) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
gtttatattgtttattataatgaatgctgc	Protospacer
****************** **.*  . . .

100. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP027256 (Escherichia coli strain EC11 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
gtttatattgtttattataatgaatgctgc	Protospacer
****************** **.*  . . .

101. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022280 (Escherichia coli strain STEC299 plasmid pSTEC299_1, complete sequence) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
gtttatattgtttattataatgaatgctgc	Protospacer
****************** **.*  . . .

102. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP009167 (Escherichia coli 1303 plasmid p1303_109, complete sequence) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
gtttatattgtttattataatgaatgctgc	Protospacer
****************** **.*  . . .

103. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP010345 (Escherichia coli ECC-1470 plasmid pECC-1470_100, complete sequence) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
gtttatattgtttattataatgaatgctgc	Protospacer
****************** **.*  . . .

104. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NC_002483 (Escherichia coli K-12 plasmid F DNA, complete sequence) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
gtttatattgtttattataatgaatgctgc	Protospacer
****************** **.*  . . .

105. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP048440 (Escherichia coli strain NBRC 3301 plasmid putative_pEcol1, complete sequence) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
gtttatattgtttattataatgaatgctgc	Protospacer
****************** **.*  . . .

106. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
gtttatattgtttattataatgaatgctgc	Protospacer
****************** **.*  . . .

107. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
gtttatattgtttattataatgaatgctgc	Protospacer
****************** **.*  . . .

108. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to KY065454 (Streptococcus phage IPP12, complete genome) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
agttatattttttattatcaaaatattttc	Protospacer
. ******* ********** ****  ...

109. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to AP014198 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C73-MedDCM-OCT-S33-C13, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
caaaatattggttatcatcataataagaag	Protospacer
    ****** ****.***********

110. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to KY065471 (Streptococcus phage IPP30, complete genome) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
agttatattttttattatcaaaatattttc	Protospacer
. ******* ********** ****  ...

111. spacer 3.14|1199998|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to KY065461 (Streptococcus phage IPP20, complete genome) position: , mismatch: 9, identity: 0.7

gtttatattgtttattatcataataagcct	CRISPR spacer
agttatattttttattatcaaaatattttc	Protospacer
. ******* ********** ****  ...

112. spacer 3.13|1199932|30|LR134520|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 10, identity: 0.667

tattttttattaagtttagcttttttacta	CRISPR spacer
acatttttattaactttagcttttgcttgt	Protospacer
   ********** ********** . .

113. spacer 1.1|116468|36|LR134520|CRISPRCasFinder matches to MN150686 (Bacillus phage BC-T25, complete genome) position: , mismatch: 11, identity: 0.694

gttaaagcagaccaagaagctaaagctaagcttgct	CRISPR spacer
aaagaagcagtacaagaagctaaagctaagaaagaa	Protospacer
.  .******  ******************   *

114. spacer 1.1|116468|36|LR134520|CRISPRCasFinder matches to JQ340088 (Halocynthia phage JM-2012, complete genome) position: , mismatch: 11, identity: 0.694

gttaaagcagaccaagaagctaaagctaagcttgct	CRISPR spacer
tcaaaagcagaaaaagaagctaaagctaaagcagaa	Protospacer
 . ********  ****************. . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

55503 : 62707

Streptococcus_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ26788.1\|55503_56748_+\|protease	FIG001621: Zinc protease	A0A1X9I714	Streptococcus_phage	1.7e-87	41.5
VEJ26789.1\|56749_58033_+	FIG009210: peptidase, M16 family	A0A2H4UVM3	Bodo_saltans_virus	1.6e-05	23.6
VEJ26790.1\|58134_58698_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
VEJ26791.1\|58697_59537_+	ATPase component of general energizing module of ECF transporters	G9BWD6	Planktothrix_phage	3.5e-20	30.0
VEJ26792.1\|59512_60355_+	ATPase component of general energizing module of ECF transporters	A0A2H4PQG7	Staphylococcus_phage	2.0e-15	28.5
VEJ26793.1\|60347_61142_+	Transmembrane component of general energizing module of ECF transporters	NA	NA	NA	NA
VEJ26794.1\|61357_61897_+	Aggregation promoting factor	A0A249XZV3	Enterococcus_phage	3.0e-17	46.4
VEJ26795.1\|62002_62707_+	immunodominant antigen A	A0A2H4J6C5	uncultured_Caudovirales_phage	3.2e-27	56.6

DBSCAN-SWA_2

71027 : 87764

Streptococcus_phage(68.75%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ26803.1\|71027_72383_+	Replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.2e-152	62.6
VEJ26804.1\|72394_72682_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
VEJ26805.1\|73011_73623_+	30S ribosomal protein S4	NA	NA	NA	NA
VEJ26806.1\|73731_74802_-	Integrase/recombinase, phage associated	A0A1X9I5Y5	Streptococcus_phage	5.6e-140	69.8
VEJ26807.1\|75141_76107_-	Protein of uncharacterised function (DUF3644)	A0A0N9RUA4	Staphylococcus_phage	4.6e-85	50.8
VEJ26808.1\|76626_76836_-	phage super infection exclusion	NA	NA	NA	NA
VEJ26809.1\|77016_77847_-	KilA domain-containing protein	Q4ZC41	Staphylococcus_virus	2.2e-80	55.7
VEJ26810.1\|77926_78469_-	XRE family transcriptional regulator	A0A1X9I723	Streptococcus_phage	1.6e-18	65.8
VEJ26811.1\|78680_78869_+	phage protein	A0A1X9I5U7	Streptococcus_phage	1.4e-06	43.5
VEJ26812.1\|78884_79493_+	Phage antirepressor protein	A0A1W6JPC3	Staphylococcus_phage	6.1e-43	47.4
VEJ26813.1\|79513_79921_+	phage protein	A0A1X9I5V7	Streptococcus_phage	1.3e-49	69.4
VEJ26814.1\|79933_80551_+	pRha family phage regulatory protein	A0A192Y918	Salmonella_phage	1.5e-09	34.7
VEJ26815.1\|80799_80973_+	phage protein	NA	NA	NA	NA
VEJ26816.1\|81113_81566_+	phage protein	A0A1X9I5V7	Streptococcus_phage	2.0e-06	34.4
VEJ26817.1\|81654_81987_+	phage protein	NA	NA	NA	NA
VEJ26818.1\|81983_82178_+	phage protein	NA	NA	NA	NA
VEJ26819.1\|82189_82519_+	phage protein	NA	NA	NA	NA
VEJ26820.1\|82521_82794_+	Uncharacterised protein	A0A1X9I5U9	Streptococcus_phage	6.1e-19	60.0
VEJ26821.1\|82794_83652_+	replication protein	A0A1X9I6L2	Streptococcus_phage	2.9e-123	74.8
VEJ26822.1\|83671_85174_+	phage replication protein	Q9AZI5	Lactococcus_phage	2.0e-63	37.2
VEJ26823.1\|85538_86084_+	Uncharacterised protein	A0A1X9I5U4	Streptococcus_phage	4.2e-27	57.9
VEJ26824.1\|86157_86646_+	Uncharacterised protein	A0A1X9I5V2	Streptococcus_phage	9.2e-50	58.0
VEJ26825.1\|87049_87412_+	phage protein	NA	NA	NA	NA
VEJ26826.1\|87386_87764_+	Phage encoded transcriptional regulator, ArpU family	Q7Y4J3	Streptococcus_phage	3.2e-10	37.9

DBSCAN-SWA_3

599808 : 610542

Streptococcus_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ27349.1\|599808_600573_+	Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)	A0A2H4PQG7	Staphylococcus_phage	2.6e-14	24.8
VEJ27350.1\|600572_601283_+	ABC transporter ATP-binding protein; Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)	G9BWD6	Planktothrix_phage	4.7e-18	28.1
VEJ27351.1\|601301_601961_+	Acetoin utilization acuB protein	M1NSC5	Streptococcus_phage	4.7e-65	56.5
VEJ27352.1\|602049_602685_+	Thymidylate kinase	M1PSC7	Streptococcus_phage	1.4e-66	60.1
VEJ27353.1\|602704_603568_+	DNA polymerase III delta prime subunit	M1NSC1	Streptococcus_phage	2.5e-74	50.0
VEJ27354.1\|603598_603925_+	DNA replication intiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
VEJ27355.1\|603930_604794_+	rRNA small subunit methyltransferase I	M1PLC5	Streptococcus_phage	3.7e-110	70.7
VEJ27356.1\|605063_605699_-	Cytoplasmic copper homeostasis protein CutC	NA	NA	NA	NA
VEJ27357.1\|605831_606923_+	Phosphoserine aminotransferase	M1Q1P2	Streptococcus_phage	3.9e-165	78.0
VEJ27358.1\|606990_607539_+	Acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
VEJ27359.1\|607601_608783_+	D-3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	1.1e-168	75.3
VEJ27360.1\|608839_609316_+	Methylated-DNA--protein-cysteine methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
VEJ27361.1\|609317_609674_+	Arsenate reductase	M1PLC0	Streptococcus_phage	5.2e-42	72.6
VEJ27362.1\|609714_610542_-	Exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	5.1e-125	78.4

DBSCAN-SWA_4

1481917 : 1524900

Streptococcus_phage(97.37%)

tail,protease,terminase,lysis,capsid,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ28184.1\|1481917_1483423_-	serine/threonine protein kinase	A0A0G2YBE6	Acanthamoeba_polyphaga_mimivirus	3.8e-09	25.1
VEJ28185.1\|1483436_1484210_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28186.1\|1484279_1485566_-	prophage LambdaSa04, site-specific recombinase resolvase	E4ZFN9	Streptococcus_phage	1.6e-194	79.8
VEJ28187.1\|1485528_1486770_-	Recombinase	A0A1X9I6J1	Streptococcus_phage	1.2e-170	69.5
VEJ28188.1\|1487550_1488957_-	Phage-associated cell wall hydrolase	A0A1B0RXL4	Streptococcus_phage	3.7e-107	63.4
VEJ28189.1\|1488958_1489357_-\|lysis	Holin, toxin secretion/phage lysis	D0R0E9	Streptococcus_phage	5.1e-38	60.8
VEJ28190.1\|1489374_1491231_-	Phage structural protein	Q6DMS9	Streptococcus_phage	2.7e-259	73.3
VEJ28191.1\|1491243_1494159_-	prophage minor structural protein	Q6DMT0	Streptococcus_phage	0.0e+00	64.6
VEJ28192.1\|1494158_1494884_-	Uncharacterised protein	Q6DMT1	Streptococcus_phage	2.1e-82	58.8
VEJ28193.1\|1494880_1498000_-\|tail	Phage tail length tape-measure protein	Q6DMT2	Streptococcus_phage	3.5e-259	78.0
VEJ28194.1\|1498294_1498714_-	prophage pi2 protein 40	A0A1X9I691	Streptococcus_phage	2.8e-55	75.5
VEJ28195.1\|1498725_1499295_-	Prophage pi2 protein 39	E4ZFM9	Streptococcus_phage	5.1e-100	97.3
VEJ28196.1\|1499297_1499624_-	prophage pi2 protein 38	M1Q1Z4	Streptococcus_phage	5.4e-38	67.6
VEJ28197.1\|1499632_1500001_-	prophage pi2 protein 37	Q6DMT7	Streptococcus_phage	9.1e-34	62.1
VEJ28198.1\|1499993_1500332_-\|head,tail	Bacteriophage head-tail adaptor	A0A1B0RXE4	Streptococcus_phage	1.2e-37	69.6
VEJ28199.1\|1500331_1500589_-	uncharacterised phage protein	D0R0D7	Streptococcus_phage	4.3e-30	78.8
VEJ28200.1\|1500585_1501794_-\|capsid	Phage major capsid protein	E4ZFM5	Streptococcus_phage	6.8e-211	91.3
VEJ28201.1\|1501807_1502506_-\|protease	Prophage Clp protease-like protein	A0A1B0RXE1	Streptococcus_phage	1.7e-105	83.2
VEJ28202.1\|1502498_1503788_-\|portal	prophage LambdaSa04, HK97 family portal protein	E4ZFM3	Streptococcus_phage	2.0e-229	91.0
VEJ28203.1\|1503868_1504141_-	cytoplasmic protein	E4ZFM1	Streptococcus_phage	4.1e-07	78.0
VEJ28204.1\|1504157_1504463_-	prophage LambdaSa04, RelE/ParE family protein	NA	NA	NA	NA
VEJ28205.1\|1504462_1504765_-	Plasmid stabilization system antitoxin protein	NA	NA	NA	NA
VEJ28206.1\|1504820_1506413_-\|terminase	Phage terminase large subunit	A0A1B0RXJ8	Streptococcus_phage	1.6e-305	95.3
VEJ28207.1\|1506409_1506679_-\|terminase	phage terminase, small subunit	E4ZFL9	Streptococcus_phage	2.4e-44	97.8
VEJ28208.1\|1506919_1507369_-	Uncharacterised protein	E4ZFL7	Streptococcus_phage	2.1e-16	65.2
VEJ28209.1\|1507379_1507634_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28210.1\|1507711_1508965_-	DNA methylase	M1NSK8	Streptococcus_phage	2.5e-232	93.8
VEJ28211.1\|1508961_1510218_-	Adenine-specific methyltransferase	A0A1B0RXE5	Streptococcus_phage	7.5e-221	90.7
VEJ28212.1\|1510189_1510645_-	zinc-finger protein	A0A1B0RXC6	Streptococcus_phage	3.5e-43	50.3
VEJ28213.1\|1511299_1512337_-	S-adenosylmethionine synthetase	E4ZFL0	Streptococcus_phage	2.2e-170	84.9
VEJ28214.1\|1512729_1513227_-	uncharacterised phage protein	A0A1B0RXB9	Streptococcus_phage	4.3e-63	75.0
VEJ28215.1\|1513219_1514596_-	DNA helicase, phage-associated	A0A1X9I6B0	Streptococcus_phage	5.2e-231	86.2
VEJ28216.1\|1514576_1514858_-	Phage protein	M1PFY8	Streptococcus_phage	7.9e-38	79.6
VEJ28217.1\|1515141_1517427_-	prophage LambdaSa04, DNA primase	E4ZFK6	Streptococcus_phage	0.0e+00	79.2
VEJ28218.1\|1517714_1517849_+	Uncharacterised protein	Q6DMW0	Streptococcus_phage	2.1e-12	86.4
VEJ28219.1\|1517823_1518147_+	Uncharacterised protein	A0A1B0RXB7	Streptococcus_phage	2.0e-32	71.2
VEJ28220.1\|1518139_1519261_+	Phage protein	A0A1X9I6D8	Streptococcus_phage	6.1e-198	88.2
VEJ28221.1\|1519265_1519829_+	Phage protein	A0A1B0RXA9	Streptococcus_phage	1.8e-89	92.3
VEJ28222.1\|1519845_1520010_+	Uncharacterised protein	NA	NA	NA	NA
VEJ28223.1\|1520059_1522015_+	FIG006036: phage encoded DNA polymerase I	D0R0B0	Streptococcus_phage	0.0e+00	84.3
VEJ28224.1\|1522053_1522458_-	Uncharacterised protein	M1Q222	Streptococcus_phage	7.6e-58	79.9
VEJ28225.1\|1522454_1522622_-	Uncharacterised protein	A0A1B0RXB3	Streptococcus_phage	3.0e-16	80.0
VEJ28226.1\|1523031_1524900_-	Domain of uncharacterised function (DUF955)	E4ZFJ9	Streptococcus_phage	9.9e-302	80.9

DBSCAN-SWA_5

1864692 : 1915818

Streptococcus_phage(25.0%)

integrase,tRNA,holin

attL 1881081:1881102|attR 1904846:1904867

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ28541.1\|1864692_1865838_+\|holin	Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA	F2Y1V5	Organic_Lake_phycodnavirus	1.9e-13	31.7
VEJ28542.1\|1865837_1866473_+\|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB	NA	NA	NA	NA
VEJ28543.1\|1866475_1867402_+\|holin	Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC	NA	NA	NA	NA
VEJ28544.1\|1867402_1868053_+\|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD	NA	NA	NA	NA
VEJ28545.1\|1868114_1869296_-	MFS general substrate transporter	NA	NA	NA	NA
VEJ28546.1\|1869368_1870229_-	Positive transcriptional regulator, MutR family	NA	NA	NA	NA
VEJ28547.1\|1870228_1870354_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28548.1\|1870350_1870440_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28549.1\|1871071_1871353_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28550.1\|1871386_1871773_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28551.1\|1871757_1872438_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28552.1\|1872410_1872971_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28553.1\|1872970_1873306_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28554.1\|1873479_1873770_-	virulence factor EsxA	NA	NA	NA	NA
VEJ28555.1\|1874276_1874564_+	DNA-damage-inducible protein J	NA	NA	NA	NA
VEJ28556.1\|1874553_1874889_+	Toxin to DNA-damage-inducible protein J	NA	NA	NA	NA
VEJ28557.1\|1875193_1875664_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28558.1\|1875831_1877088_-	Mobilization protein MobM	M1NXP9	Cellulophaga_phage	3.2e-14	30.8
VEJ28559.1\|1877404_1877839_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28560.1\|1877874_1878750_-	replication initiation factor family protein	NA	NA	NA	NA
VEJ28561.1\|1879049_1879691_-	Arsenate reductase and related proteins, glutaredoxin family	NA	NA	NA	NA
VEJ28562.1\|1879694_1880021_-	replication initiation factor	NA	NA	NA	NA
VEJ28563.1\|1880026_1880308_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28564.1\|1880448_1880781_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28565.1\|1880906_1881458_+	DNA-binding protein	NA	NA	NA	NA
1881081:1881102	attL	NA	NA	NA	NA
VEJ28566.1\|1881526_1882681_+\|integrase	site-specific recombinase, phage integrase family	A0A1S5S7K9	Streptococcus_phage	2.0e-47	33.4
VEJ28567.1\|1883024_1883345_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28568.1\|1883378_1883513_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28569.1\|1883558_1883897_-	cadmium efflux system accessory protein	E4ZFI8	Streptococcus_phage	3.8e-10	32.4
VEJ28570.1\|1883908_1884523_-	cadmium resistance protein	NA	NA	NA	NA
VEJ28571.1\|1885229_1887299_-	copper-exporting ATPase	A0A218MNH6	uncultured_virus	6.7e-57	29.6
VEJ28572.1\|1887318_1887768_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA
VEJ28573.1\|1888016_1888409_-	SSU ribosomal protein S9p (S16e)	NA	NA	NA	NA
VEJ28574.1\|1888429_1888876_-	50S ribosomal protein L13	NA	NA	NA	NA
VEJ28575.1\|1889756_1890617_-\|tRNA	DegV family protein in cluster with TrmH family tRNA/rRNA methyltransferase YacO	NA	NA	NA	NA
VEJ28576.1\|1890709_1891228_-	Predicted RNA-binding protein containing a PIN domain	NA	NA	NA	NA
VEJ28577.1\|1891224_1891980_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
VEJ28578.1\|1892082_1892469_-	COG1939: Ribonuclease III family protein	NA	NA	NA	NA
VEJ28579.1\|1892461_1893805_-\|tRNA	Cysteinyl-tRNA synthetase	A0A1V0SAQ2	Catovirus	2.9e-53	31.2
VEJ28580.1\|1893801_1893984_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28581.1\|1893993_1894578_-	serine acetyltransferase	NA	NA	NA	NA
VEJ28582.1\|1894586_1895339_-	Uncharacterised protein	NA	NA	NA	NA
VEJ28583.1\|1895340_1897470_-	Polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
VEJ28584.1\|1897850_1898120_-	30S ribosomal protein S15	NA	NA	NA	NA
VEJ28585.1\|1898207_1899467_-	oxidoreductase, putative	NA	NA	NA	NA
VEJ28586.1\|1899575_1900505_-	Transketolase, C-terminal section	NA	NA	NA	NA
VEJ28587.1\|1900501_1901359_-	Transketolase, N-terminal section	NA	NA	NA	NA
VEJ28588.1\|1901361_1902717_-	Putative integral membrane protein	NA	NA	NA	NA
VEJ28589.1\|1902729_1903014_-	PTS system ascorbate-specific transporter subunits IICB	NA	NA	NA	NA
VEJ28590.1\|1903016_1905053_-	Predicted galactitol operon regulator (Transcriptional antiterminator), BglG family / PTS system,mannitol/fructose-specific IIA component	NA	NA	NA	NA
1904846:1904867	attR	NA	NA	NA	NA
VEJ28591.1\|1905268_1906894_-	Trehalose-6-phosphate hydrolase	NA	NA	NA	NA
VEJ28592.1\|1907115_1909146_-	PTS system, trehalose-specific IIB component / PTS system, trehalose-specific IIC component/ PTS system, trehalose-specific IIA component	NA	NA	NA	NA
VEJ28593.1\|1909428_1910055_-	Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2)	G3M9Y6	Bacillus_virus	2.3e-16	27.0
VEJ28594.1\|1910038_1910842_-	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	A0A2R8FG22	Brazilian_cedratvirus	3.2e-07	26.9
VEJ28595.1\|1910853_1911675_-	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	NA	NA	NA	NA
VEJ28596.1\|1911671_1912649_-	oligopeptide ABC transporter (permease)	NA	NA	NA	NA
VEJ28597.1\|1912761_1914390_-	Glutathione-binding protein gsiB	NA	NA	NA	NA
VEJ28598.1\|1914632_1915361_-	LrgA-associated membrane protein LrgB	NA	NA	NA	NA
VEJ28599.1\|1915362_1915818_-\|holin	Antiholin-like protein LrgA	NA	NA	NA	NA

DBSCAN-SWA_6

2069504 : 2081569

Synechococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ28749.1\|2069504_2070809_-	Group B streptococcal surface immunogenic protein	A0A2D1GNZ3	Streptomyces_phage	3.7e-05	40.5
VEJ28750.1\|2070955_2071855_-	peptidase, M23/M37 family	A0A221J6U0	Arthrobacter_phage	1.2e-18	45.0
VEJ28751.1\|2072047_2073595_-	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	Q58MG4	Prochlorococcus_phage	3.9e-78	49.2
VEJ28752.1\|2073614_2074367_-	acetyltransferase, GNAT family	NA	NA	NA	NA
VEJ28753.1\|2074389_2074938_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-25	35.6
VEJ28754.1\|2075105_2076128_-	phosphoribosylaminoimidazole synthetase	R9TMC7	Synechococcus_phage	1.1e-63	42.7
VEJ28755.1\|2076155_2077610_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.7e-54	32.7
VEJ28756.1\|2077843_2081569_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.9e-38	25.9

Anti-CRISPR protein detection

Acr_ID: LR134520.1|VEJ28562.1|1879694_1880021_-|replication-initiation-factor

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LR134520.1|VEJ28562.1|1879694_1880021_-|replication-initiation-factor

1879694_1880021_-

108 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|63	1.0	1	1.0

1864692-1915818

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134520

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information