| LR134519.1|VEJ26549.1|1437725_1438853_+|carbamoyl-phosphate-synthase-small-subunit |
gnl|CDD|223579 |
COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism].
|
0 |
| LR134519.1|VEJ26560.1|1449687_1450710_-|putative-DNA-polymerase-III-delta-subunit |
gnl|CDD|236276 |
PRK08487, PRK08487, DNA polymerase III subunit delta; Validated.
|
2.87568e-127 |
| LR134519.1|VEJ26558.1|1448574_1449120_-|single-stranded-DNA-binding-protein |
gnl|CDD|236275 |
PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional.
|
2.06121e-108 |
| LR134519.1|VEJ26559.1|1449129_1449558_-|30S-ribosomal-protein-S6 |
gnl|CDD|179034 |
PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.
|
1.98065e-41 |
| LR134519.1|VEJ26561.1|1450699_1452634_-|ribonuclease-R |
gnl|CDD|223631 |
COG0557, VacB, Exoribonuclease R [Transcription].
|
3.69709e-136 |
| LR134519.1|VEJ26553.1|1441224_1441797_-|Maf-like-protein |
gnl|CDD|179732 |
PRK04056, PRK04056, septum formation inhibitor Maf.
|
2.16575e-96 |
| LR134519.1|VEJ26554.1|1441798_1444342_-|alanyl-tRNA-synthetase |
gnl|CDD|234701 |
PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
|
0 |
| LR134519.1|VEJ26562.1|1452633_1453425_-|shikimate-5-dehydrogenase |
gnl|CDD|161904 |
TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. [Amino acid biosynthesis, Aromatic amino acid family].
|
7.95416e-115 |
| LR134519.1|VEJ26546.1|1434948_1435845_+|membrane-transport-protein |
gnl|CDD|307170 |
pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.
|
4.19539e-13 |
| LR134519.1|VEJ26564.1|1454031_1455078_-|peptide/nickel-transport-system-permease-protein |
gnl|CDD|226642 |
COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].
|
0 |
| LR134519.1|VEJ26557.1|1448294_1448552_-|30S-ribosomal-protein-S18 |
gnl|CDD|178997 |
PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.
|
2.41298e-32 |
| LR134519.1|VEJ26563.1|1453432_1454023_-|putative-cell-wall-peptidase,-NlpC/P60-family |
gnl|CDD|214600 |
smart00287, SH3b, Bacterial SH3 domain homologues.
|
4.40415e-11 |
| LR134519.1|VEJ26550.1|1439018_1439330_+|formamidase |
gnl|CDD|183950 |
PRK13287, amiF, formamidase; Provisional.
|
8.92177e-52 |
| LR134519.1|VEJ26548.1|1437174_1437726_+|competence/damage-inducible-domain-protein |
gnl|CDD|225502 |
COG2952, COG2952, Uncharacterized protein conserved in bacteria [Function unknown].
|
5.26568e-81 |
| LR134519.1|VEJ26555.1|1444460_1444691_+|Uncharacterized-protein-conserved-in-bacteria |
gnl|CDD|225397 |
COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown].
|
7.36269e-25 |
| LR134519.1|VEJ26565.1|1455074_1455740_-|oligopeptide-ABC-transporter |
gnl|CDD|173862 |
cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.
|
1.67821e-78 |
| LR134519.1|VEJ26556.1|1445511_1447662_-|Adhesin |
gnl|CDD|375731 |
pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.
|
1.16732e-79 |
| LR134519.1|VEJ26547.1|1435848_1437096_+|Integral-membrane-protein |
gnl|CDD|379080 |
pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.
|
0.000157114 |
| LR134519.1|VEJ26551.1|1439310_1440156_+|formamidase |
gnl|CDD|183950 |
PRK13287, amiF, formamidase; Provisional.
|
0 |
