CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134530	Campylobacter jejuni subsp. doylei strain NCTC11924 genome assembly, chromosome: 1	2 crisprs	DEDDh,cas14k,cas4,cas2,cas1,cas9	2	4	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134530_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134530_3

678244-678347

TypeV

Consensus_repeat	Method
TTATTTTAGCCTATTATTAATTGTTTATATGGTAAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134530_3

>merge|LR134530|3|678244-678347|CRISPRCasFinder
TTATTTTAGCCTATTATTAATTGTTTATATGGTAAAATCCATATTTTTTAGTATTATTGTAGCCTTTTATTTTAGCCTATTATTAATTGTTTATATGGTAAAAT

>LR134530|3|3|678244-678347|CRISPRCasFinder
TTATTTTAGCCTATTATTAATTGTTTATATGGTAAAAT	CCATATTTTTTAGTATTATTGTAGCCTT
TTATTTTAGCCTATTATTAATTGTTTATATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134530.1\|VEJ46894.1\|671791_672175_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134530.1\|VEJ46906.1\|679089_679950_+\|phage-integrase-family-site-specific-recombinase	unknown	unknown	gnl\|CDD\|274043
LR134530.1\|VEJ46903.1\|677840_678197_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134530.1\|VEJ46895.1\|672214_672397_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134530.1\|VEJ46911.1\|681876_682977_-\|RodA-protein	unknown	unknown	gnl\|CDD\|274033
LR134530.1\|VEJ46909.1\|681082_681334_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134530.1\|VEJ46900.1\|675692_676718_+\|putative-DNA-primase	unknown	unknown	gnl\|CDD\|273595
LR134530.1\|VEJ46898.1\|674506_675091_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134530.1\|VEJ46902.1\|677170_677569_+\|BdrR	unknown	unknown	unknown
LR134530.1\|VEJ46904.1\|678434_678629_-\|WGR-domain-containing-protein	unknown	unknown	unknown
LR134530.1\|VEJ46908.1\|680369_680996_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|271182
LR134530.1\|VEJ46913.1\|683971_685201_+\|putative-fibronectin-domain-containing-lipoprotein	unknown	unknown	gnl\|CDD\|225936
LR134530.1\|VEJ46905.1\|678640_678871_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134530.1\|VEJ46899.1\|675134_675632_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134530.1\|VEJ46897.1\|672845_674411_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372683
LR134530.1\|VEJ46912.1\|683055_684024_+\|ribosomal-large-subunit-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|223638
LR134530.1\|VEJ46901.1\|676863_677121_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134530.1\|VEJ46907.1\|680247_680373_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134530.1\|VEJ46896.1\|672473_672812_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134530.1\|VEJ46910.1\|681431_681569_-\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134530.1\|VEJ46911.1\|681876_682977_-\|RodA-protein	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	7.17238e-115
LR134530.1\|VEJ46906.1\|679089_679950_+\|phage-integrase-family-site-specific-recombinase	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	2.94003e-19
LR134530.1\|VEJ46908.1\|680369_680996_-\|30S-ribosomal-protein-S15	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.1564e-57
LR134530.1\|VEJ46913.1\|683971_685201_+\|putative-fibronectin-domain-containing-lipoprotein	gnl\|CDD\|225936	COG3401, COG3401, Fibronectin type 3 domain-containing protein [General function prediction only].	2.9826e-131
LR134530.1\|VEJ46912.1\|683055_684024_+\|ribosomal-large-subunit-pseudouridine-synthase-D	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.03953e-96
LR134530.1\|VEJ46897.1\|672845_674411_+\|Uncharacterised-protein	gnl\|CDD\|372683	pfam13708, DUF4942, Domain of unknown function (DUF4942). The function of this family is not known.	1.20046e-13
LR134530.1\|VEJ46900.1\|675692_676718_+\|putative-DNA-primase	gnl\|CDD\|273595	TIGR01391, DNA_primase, DNA primase, catalytic core. Members of this family are DNA primase, a ubiquitous bacteria protein. Most members of this family contain nearly two hundred additional residues C-terminal to the region represented here, but conservation between species is poor and the C-terminal region was not included in the seed alignment. This protein contains a CHC2 zinc finger (pfam01807) and a Toprim domain (pfam01751). [DNA metabolism, DNA replication, recombination, and repair].	3.09587e-16

>LR134530.1|VEJ46903.1|677840_678197_+|Uncharacterised-protein
MIETQYECILDNVSKASCKKILANIIDLKNIIIDGYFIDLIDHMIDGNKFEFSPDMNLIKYKNYIININTLEIAGLPQEVEKIEDELIFQKKLDENILKEFQALIKLVFRKDCNKIKL
>LR134530.1|VEJ46902.1|677170_677569_+|BdrR
MQGNTVRNYYVSEGVKALFSIYFKDQTEENFIKALNEFGKENQINSQEIKDEALREIKEELSKLATTDLLNARIDTVDAKIDKVEASLNARIDKVENKLDSFKTEVKTYAIIIALMFILQPTIFDLIKSIFK
>LR134530.1|VEJ46901.1|676863_677121_+|Uncharacterised-protein
MALSYELCCKLFDKNFENLNYTKEELFFIRECYSECGKVMDMLGEDTIEKLLKEKETIILPNVTKYAKVSINEYFENKKMKCLKN
>LR134530.1|VEJ46900.1|675692_676718_+|putative-DNA-primase
MKYDIERLNNIPIMDVLESLGAISDKNKRIIHCFNITAHKNNDHNASLGIYESTNTCHCFACGIGGNPVNVVKTMFNGNFKEACEYLHSQFNIPFLDGIQATYKKVFEKPKLKAKDYVFFDPNKKYVEVEKLAPFVQNYSTLTKAQKLKLVYTTIYRFSLSTEQKAKNFYYLKRGIKDLSLVEKIGFLNFNNIKKLENLLKEYFPIEDLIEFKIFSEEKQAWKYAFNVAFVPNFDLYSNRVVGFSLRVIDSTYNGAKEVNISCGNIVFAMPFGLENKSLKECEKIVITEGHIDCLSARNYYKQDSKTLFISFAGTFSFREEILTVFKDKRVMLCFDKDEAG
>LR134530.1|VEJ46899.1|675134_675632_+|Uncharacterised-protein
MKKFTEMSKDLIKHYGLDNVANETEINALAYALQDCCAMYNKKNELSFTDKQIDDFKSYIVEYHIKGDNEPNNEQSVEDIVYSLHYSMLLSSVPEEIVDDIDRDLFINKVEMGMDGRYQVSFLCDDAESFLKRIKEYIAFGKKLNDYTKFCLENTDNFCGCEEVF
>LR134530.1|VEJ46898.1|674506_675091_+|Uncharacterised-protein
MEKNVLENMFEKLMHKGISVFTLDGKEIRIEQDEFYNPFDNCRNPSFFNLLKRYDIGEKEIDGLDCTDFENIQEIEDYLNSKGYIWIRVGAYIHSGIALHSEGNKPRSYSYGWDCGCAGYAYYTKEQVREIFDVKRISAKFKDKLYKNIEIFIKELEAYLEGNIYTLYVDDIPEDTFIGYDKKQMLQTLERFAA
>LR134530.1|VEJ46897.1|672845_674411_+|Uncharacterised-protein
MSANMLKSIKEVNQDFEWYPTTEEMINSLINGINEKYLKNALDIGAGDGRVLDMLASKLSVDKLYSIEKSEPLIQAMSRKILNIGRDFWETSLIEKQAELIFCNPPYSEYEDWMVRIIKEANFEILAFIVPMRWKENIFIQQAIQQRNLDYEIIDSFDFLNAERKARAKVDLIIFKPKGDHKDSFELFLEEQFGFKMPNDYFSKIETEKKEADELHLQCNIIKSEDLIDFLLKKYNEELKIYIDSIKSLSKVDSLVFEYLDISKKKVLKGLESRLKHIKAIYWNELFKKLSPISSKVISKIRTNLSSSIITKAHIEFTRGNIESVLCWFTKNINEYIKLSYLNFFDSLSKENNAFLYKSNERFNYGNWRYRKGYDYTNEFENIKLKLDYRIVVPYLAQVDSWRYNERANEFMQDLKVIANNLGLSFSCEHNFKFNAGESNSFYLDNGIKFFEYKAYKNGNVHFKFSQDFMAKLNLAVGRLRNWLTKEEAKEEFKDISEDIINEIFDKPLLLDFKNMKLLSF
>LR134530.1|VEJ46896.1|672473_672812_+|Uncharacterised-protein
MNILLRNDIDDLNSKEFKKFLECKEAFRLRGMKNKNQEIFVKRMAKGEKIIARISSVIDVKEKVKIEILKISCKEKGIKKKFYSKKVFLQIIMKHNSMIFMVLEFTELSNCS
>LR134530.1|VEJ46895.1|672214_672397_+|Uncharacterised-protein
MGIICMFGIFSLVYVLICLFCMLIMMCFGKLKPMSLLRFLRFFLTVPLVCLELIFEGKNK
>LR134530.1|VEJ46894.1|671791_672175_+|Uncharacterised-protein
MLTCTNELVVAKLARALAYKEAKKDKSKVDFLINLFKKQIQNCIKATEHFTDRVSQRFEEVENDTLSVAISRAIRNTSPLQRGADYHIATTQKYLDEDSNIVVVLERQGEFGAVLVTTYKGTRKFAF
>LR134530.1|VEJ46904.1|678434_678629_-|WGR-domain-containing-protein
MNNVLLHRLTEKENIRYYSIEIVATLFEEYIVERVYGNLRFKSCTGRKNNVFSSFSKAQIFLRS
>LR134530.1|VEJ46905.1|678640_678871_-|Uncharacterised-protein
MEKNTINNDNIQKNEILITKRVLFDEKTLKMIEMMLPTYKDEISNTNKENEKINQMIKLAIEKMFKNDFLNKINNF
>LR134530.1|VEJ46906.1|679089_679950_+|phage-integrase-family-site-specific-recombinase
MELKNTTISEDLERWIEAYLKHIQALSYSNNTFLLYRSILLEFVEYSLDYQDEMQIIDIKTTFLINFLNYLENNSKNGKKLSKKTKITYLRVLTSFFSFISDNNDDLFIFSFDMKKIRFRTEKSEEKLNYLNENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIYAKALISKKGLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKAALLNN
>LR134530.1|VEJ46907.1|680247_680373_-|Uncharacterised-protein
MKNKDLKEAIHSWGRGVEFFENKENREKLIKTLIIHLNSYL
>LR134530.1|VEJ46908.1|680369_680996_-|30S-ribosomal-protein-S15
MKTLYGSSKKQNLRAITKEERFKELLLAIENYNGNIFTKVALQISPYLFLRSANIRNLEWSEIDFKNLKIIIPPNKMKGGEDFIIPLNKSVIKLFEFIKPFSFYNSKYVFPSDISKSKTMSENTLNQAIKRLGFGDEMVFHGFRTTASTLLYEFKNLHGQDSEVIELCLDHRERNNVKATYNRSLRLNDRKLLMQWWSDYIDKLKGII
>LR134530.1|VEJ46909.1|681082_681334_-|Uncharacterised-protein
MLAQKIDPKEQIQKEDIKKSKTLKEVFKEWVENFYKEKSNYNTPHRVDIHIISKLGDKDITTLTRQDIIAIYDKLKAEESLKL
>LR134530.1|VEJ46910.1|681431_681569_-|Uncharacterised-protein
MVIINDKQLKNLIVEKRTYIKDTYTRNLYIEAKDFFKRYYYLFLF
>LR134530.1|VEJ46911.1|681876_682977_-|RodA-protein
MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFVYACVGLFAFMVFFSFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTHFTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGSAMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPSYQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIFYILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFSYGGSSFTIFMIFFGILQHLITFRYFWTDIKAK
>LR134530.1|VEJ46912.1|683055_684024_+|ribosomal-large-subunit-pseudouridine-synthase-D
MQTFLVDKNSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQDKNSFKLKNGDIISITSLKLYDEIKPQFEVDFDIDILYEDEDLLVLNKPSNLVVHGASSVKNATLVDWLIGKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLADKSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIATDKENKFSKNAKSAFINVLKTENLTLMAAKLFTGRTHQIRAHLASLNRHILGDSLYGYKGKYDCRIMLHAYFLYFIHPKTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFT
>LR134530.1|VEJ46913.1|683971_685201_+|putative-fibronectin-domain-containing-lipoprotein
MKRFRLSFYLSFLTLLLSACSVLQMNSLASSKEPTVNESLPKVESLKSLSDMSNIAFEWESLYDENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKLEPNTKYRYTMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHPDFRVDSYIIERTKGDKEFKKIAEVKNRLNAEYIDNDLKSNENSSYRIIAVSFNGIKSEPSQVVSSTSKALPPQVEHLSASTDGSNKIILTWDAPTYEDFSYYKVYSTSSSFLPFSVLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLSNPLAPSIILAQSTSEGINLEWSDGDTRAVEYEVRRYGGKQNAVFKGIKEKRLKDVKALPGVEYNYEVIAIDSVGLRSKPSSKVKAAQ

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Crispr_ID: LR134530_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134530_4

1582035-1582397

TypeII

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

5 spacers

cas2,cas1,cas9

The CRISPR arrays of LR134530_4

>merge|LR134530|4|1582035-1582397|CRISPRCasFinder,CRT,PILER-CR
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCCACTGCCAGGATTTCCAACAATATAAGTAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATACCAAGAAACGAGTTTTTACAAGGCTCATCGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAAATTTTCATATCAATCCTTTGGAACTCATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTGCAGTAGCTTCGCAAAAGCCTAAAAGAGAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTTCGGAATTCATGTTAAGCACCGCGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>LR134530|4|4|1582035-1582397|CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CCACTGCCAGGATTTCCAACAATATAAGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ACCAAGAAACGAGTTTTTACAAGGCTCATC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AAATTTTCATATCAATCCTTTGGAACTCAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TGCAGTAGCTTCGCAAAAGCCTAAAAGAGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTCGGAATTCATGTTAAGCACCGCG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>LR134530|4|1|1582035-1582397|CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CCACTGCCAGGATTTCCAACAATATAAGTA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ACCAAGAAACGAGTTTTTACAAGGCTCATC
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AAATTTTCATATCAATCCTTTGGAACTCAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TGCAGTAGCTTCGCAAAAGCCTAAAAGAGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTCGGAATTCATGTTAAGCACCGCG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>LR134530|4|1|1582167-1582397|PILER-CR
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AAATTTTCATATCAATCCTTTGGAACTCAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TGCAGTAGCTTCGCAAAAGCCTAAAAGAGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTTCGGAATTCATGTTAAGCACCGCG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134530.1\|VEJ47829.1\|1580278_1580725_+\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
LR134530.1\|VEJ47830.1\|1580728_1581919_+\|Molybdopterin-biosynthesis-protein-MoeA	unknown	unknown	gnl\|CDD\|223380
LR134530.1\|VEJ47840.1\|1592667_1593117_-\|bacterioferritin	unknown	unknown	gnl\|CDD\|223854
LR134530.1\|VEJ47836.1\|1589508_1590114_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
LR134530.1\|VEJ47838.1\|1590834_1591569_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539
LR134530.1\|VEJ47832.1\|1582965_1583856_-\|CRISPR-associated-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LR134530.1\|VEJ47833.1\|1583852_1586816_-\|CRISPR-associated-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134530.1\|VEJ47822.1\|1573269_1575510_-\|formate-dehydrogenase,-alpha-subunit	unknown	unknown	gnl\|CDD\|239153
LR134530.1\|VEJ47825.1\|1576239_1576941_-\|Putative-formate-dehydrogenase-specific-chaperone	unknown	unknown	gnl\|CDD\|225916
LR134530.1\|VEJ47831.1\|1582541_1582973_-\|CRISPR-associated-Cas2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LR134530.1\|VEJ47826.1\|1577247_1578396_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
LR134530.1\|VEJ47835.1\|1588458_1589448_-\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
LR134530.1\|VEJ47827.1\|1578519_1580055_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|225043
LR134530.1\|VEJ47839.1\|1591565_1592603_-\|helix-turn-helix-containing-protein	unknown	unknown	gnl\|CDD\|224292
LR134530.1\|VEJ47824.1\|1576073_1576265_-\|tat-domain-protein	unknown	unknown	gnl\|CDD\|236534
LR134530.1\|VEJ47828.1\|1580056_1580278_+\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|340452
LR134530.1\|VEJ47834.1\|1587552_1587960_+\|C4-dicarboxylate-anaerobic-carrier,-putative	unknown	unknown	gnl\|CDD\|225611
LR134530.1\|VEJ47823.1\|1575531_1576074_-\|Formate-dehydrogenase-O,-major-subunit-@-selenocysteine-containing	unknown	unknown	gnl\|CDD\|239153
LR134530.1\|VEJ47821.1\|1572631_1573273_-\|Formate-dehydrogenase-O,-iron-sulfur-subunit;-Putative-formate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|319893
LR134530.1\|VEJ47837.1\|1590110_1590860_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768

Protein	Function_ID	Function_description	E-value
LR134530.1\|VEJ47829.1\|1580278_1580725_+\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	4.48511e-42
LR134530.1\|VEJ47830.1\|1580728_1581919_+\|Molybdopterin-biosynthesis-protein-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	1.02745e-139
LR134530.1\|VEJ47840.1\|1592667_1593117_-\|bacterioferritin	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	3.14818e-51
LR134530.1\|VEJ47836.1\|1589508_1590114_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	2.88338e-71
LR134530.1\|VEJ47838.1\|1590834_1591569_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	1.0228e-96
LR134530.1\|VEJ47832.1\|1582965_1583856_-\|CRISPR-associated-protein	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	9.15416e-122
LR134530.1\|VEJ47833.1\|1583852_1586816_-\|CRISPR-associated-protein	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LR134530.1\|VEJ47822.1\|1573269_1575510_-\|formate-dehydrogenase,-alpha-subunit	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	1.37287e-160
LR134530.1\|VEJ47825.1\|1576239_1576941_-\|Putative-formate-dehydrogenase-specific-chaperone	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000266194
LR134530.1\|VEJ47831.1\|1582541_1582973_-\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.21321e-59
LR134530.1\|VEJ47826.1\|1577247_1578396_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
LR134530.1\|VEJ47835.1\|1588458_1589448_-\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
LR134530.1\|VEJ47827.1\|1578519_1580055_+\|oxidoreductase	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.03274e-120
LR134530.1\|VEJ47839.1\|1591565_1592603_-\|helix-turn-helix-containing-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.0821e-33
LR134530.1\|VEJ47824.1\|1576073_1576265_-\|tat-domain-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00235632
LR134530.1\|VEJ47828.1\|1580056_1580278_+\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	6.04324e-11
LR134530.1\|VEJ47834.1\|1587552_1587960_+\|C4-dicarboxylate-anaerobic-carrier,-putative	gnl\|CDD\|225611	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion].	2.1244e-09
LR134530.1\|VEJ47823.1\|1575531_1576074_-\|Formate-dehydrogenase-O,-major-subunit-@-selenocysteine-containing	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	3.51165e-62
LR134530.1\|VEJ47821.1\|1572631_1573273_-\|Formate-dehydrogenase-O,-iron-sulfur-subunit;-Putative-formate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.56059e-57
LR134530.1\|VEJ47837.1\|1590110_1590860_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.21214e-90

>LR134530.1|VEJ47830.1|1580728_1581919_+|Molybdopterin-biosynthesis-protein-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKASKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLAPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIKFENGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEILENESLVDIIFMP
>LR134530.1|VEJ47829.1|1580278_1580725_+|molybdopterin-synthase-catalytic-subunit
MEHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGGIEALSFDIYEPLLKKWFDEWQKRVDFDGITLLFAHSIGDVAVHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVISKERIYAKERSTKLCGAGLLKG
>LR134530.1|VEJ47828.1|1580056_1580278_+|molybdopterin-synthase-sulfur-carrier-subunit
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKNGDKIALLPPVCGG
>LR134530.1|VEJ47827.1|1578519_1580055_+|oxidoreductase
MNRRNFLKFNALTLASMGVAYANPMHDSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGKILKALPLLKNESKEKNIFRTTLEIKENHIELIKGKKTLFYTYNGLAPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEEKIYRFEIPQDSAGTYWYHPHSHYTASKQVFMGLAGAFVIKAKKDALSHLKERDLMISDLRLDENAQIPNNNLNDWLNGREGEFILINGQFKPQIKLATNERIRIYNATAARYLNLHIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDAPKDGEFKLESTYYDRDKMMVKEEPNTLFLADISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGKSESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>LR134530.1|VEJ47826.1|1577247_1578396_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIDEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRTKDFENVDLSAIEGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDFKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDYKNELQMIREFSYKDYSLRN
>LR134530.1|VEJ47825.1|1576239_1576941_-|Putative-formate-dehydrogenase-specific-chaperone
MDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDHLAKELFEKVINKSIDEFLGDVFMNKNANLYKEISSIALAFMEFERLCFEVEKPVKINSKKVQNDLSRSEFLRREANKQRRTSEKSQGIS
>LR134530.1|VEJ47824.1|1576073_1576265_-|tat-domain-protein
MKNRREFLKKSAFALGAAGVLGSMTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>LR134530.1|VEJ47823.1|1575531_1576074_-|Formate-dehydrogenase-O,-major-subunit-@-selenocysteine-containing
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKISNEQAYYVRKFAAFFGTNNVDHQARI
>LR134530.1|VEJ47822.1|1573269_1575510_-|formate-dehydrogenase,-alpha-subunit
MANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDVIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKAKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQARDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>LR134530.1|VEJ47821.1|1572631_1573273_-|Formate-dehydrogenase-O,-iron-sulfur-subunit;-Putative-formate-dehydrogenase-iron-sulfur-subunit
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSKKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>LR134530.1|VEJ47831.1|1582541_1582973_-|CRISPR-associated-Cas2-family-protein
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGLVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYYQQNLFEF
>LR134530.1|VEJ47832.1|1582965_1583856_-|CRISPR-associated-protein
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQASLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLELVGESEFLSKDDKRALISHLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>LR134530.1|VEJ47833.1|1583852_1586816_-|CRISPR-associated-protein
MAKILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNNGDEEKGKILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFINVRNKKESYERCIAQSFLKDELKLIFQKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSNDYEFKGEKGNYFIEFQKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDAELECEKLGLKINNKNILKLRLFKEQKEFCVYSGKKIKISDLQDEKMLEIDHIYPYSRSFDDSYTNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAAIIAYANNSIVKAFSGFKKEQESNTAELYAKKISELDYKNKRKFFDPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVSNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVVQGKDKKSDLIKDWILMDENYEFCFSLYKDSLILIQTKNMQEPELVYYESLDNSNASLTVSKHDNKFETLSKNQKILFKKANEKKVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>LR134530.1|VEJ47834.1|1587552_1587960_+|C4-dicarboxylate-anaerobic-carrier,-putative
MADMVGQSDNVVGLFLNYQIYSVITYVVVIAILIPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYILFPWLPVVFLFTAYFFTIKLDVVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFSQS
>LR134530.1|VEJ47835.1|1588458_1589448_-|Phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNAFVEAIKPLIKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISVLAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEENEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIMGEICINEGIVLE
>LR134530.1|VEJ47836.1|1589508_1590114_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHEILDENALELEKIFSPFSLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQILDKKNKAFFVEIPLFFESGAYENLGKIIVIYAPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>LR134530.1|VEJ47837.1|1590110_1590860_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSSLAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPSMIFLTGAGVIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQSLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEMGFAYKNEELFFEGKVKYCFEANYNFS
>LR134530.1|VEJ47838.1|1590834_1591569_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase-domain-containing-protein
MKPIIIFLSLFLIPLFAADDLKNGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAEYKKSIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESESKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>LR134530.1|VEJ47839.1|1591565_1592603_-|helix-turn-helix-containing-protein
MKVLNFFYENHPKFEVSYERKIQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKIPIILSTSIKDLNVNGFEELEFDYFDFEEFVSVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQSSISKIFMELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSLGF
>LR134530.1|VEJ47840.1|1592667_1593117_-|bacterioferritin
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEIAEKESDTTTATFAQENIAKYEKSLWMIGATLQGTCKM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134530_3	3.1\|678282\|28\|LR134530\|CRISPRCasFinder	678282-678309	28	LR134530.1	773860-773887	0	1.0
LR134530_4	4.3\|1582203\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582203-1582232	30	LR134530.1	689055-689084	0	1.0

1. spacer 3.1|678282|28|LR134530|CRISPRCasFinder matches to position: 773860-773887, mismatch: 0, identity: 1.0

ccatattttttagtattattgtagcctt	CRISPR spacer
ccatattttttagtattattgtagcctt	Protospacer
****************************

2. spacer 4.3|1582203|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to position: 689055-689084, mismatch: 0, identity: 1.0

aaattttcatatcaatcctttggaactcat	CRISPR spacer
aaattttcatatcaatcctttggaactcat	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134530_4	4.4\|1582269\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582269-1582298	30	NC_008438	Campylobacter jejuni plasmid pCJ01, complete sequence	2125-2154	1	0.967
LR134530_4	4.4\|1582269\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582269-1582298	30	NZ_CP017858	Campylobacter jejuni strain YQ2210 plasmid pCJDM210S, complete sequence	3487-3516	1	0.967
LR134530_4	4.4\|1582269\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582269-1582298	30	NZ_CP017855	Campylobacter jejuni strain ZP3204 plasmid pCJDM204S, complete sequence	4005-4034	1	0.967
LR134530_4	4.5\|1582335\|27\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582335-1582361	27	NC_008438	Campylobacter jejuni plasmid pCJ01, complete sequence	2738-2764	1	0.963
LR134530_3	3.1\|678282\|28\|LR134530\|CRISPRCasFinder	678282-678309	28	KM359505	Prochlorococcus phage P-TIM68, complete genome	145381-145408	4	0.857
LR134530_3	3.1\|678282\|28\|LR134530\|CRISPRCasFinder	678282-678309	28	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	2767-2794	5	0.821
LR134530_4	4.3\|1582203\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582203-1582232	30	MH153812	Rhodococcus phage Grayson, complete genome	94617-94646	5	0.833
LR134530_4	4.3\|1582203\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582203-1582232	30	NC_017543	Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence	17083-17112	5	0.833
LR134530_4	4.5\|1582335\|27\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582335-1582361	27	NZ_CP010737	Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence	50132-50158	5	0.815
LR134530_3	3.1\|678282\|28\|LR134530\|CRISPRCasFinder	678282-678309	28	MK496767	Capybara microvirus Cap3_SP_332, complete genome	5311-5338	7	0.75
LR134530_4	4.3\|1582203\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582203-1582232	30	MK250024	Prevotella phage Lak-B5, complete genome	438343-438372	9	0.7
LR134530_4	4.3\|1582203\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582203-1582232	30	MK250028	Prevotella phage Lak-B9, complete genome	442763-442792	9	0.7
LR134530_4	4.3\|1582203\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582203-1582232	30	MK250025	Prevotella phage Lak-B6, complete genome	441425-441454	9	0.7
LR134530_4	4.3\|1582203\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582203-1582232	30	MK250022	Prevotella phage Lak-B3, complete genome	441516-441545	9	0.7
LR134530_4	4.3\|1582203\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582203-1582232	30	MK250027	Prevotella phage Lak-B8, complete genome	445490-445519	9	0.7
LR134530_4	4.3\|1582203\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582203-1582232	30	MK250026	Prevotella phage Lak-B7, complete genome	444526-444555	9	0.7
LR134530_4	4.3\|1582203\|30\|LR134530\|CRISPRCasFinder,CRT,PILER-CR	1582203-1582232	30	MK250020	Prevotella phage Lak-B1, complete genome	442746-442775	9	0.7

1. spacer 4.4|1582269|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to NC_008438 (Campylobacter jejuni plasmid pCJ01, complete sequence) position: , mismatch: 1, identity: 0.967

tgcagtagcttcgcaaaagcctaaaagaga	CRISPR spacer
tgcagtagcttcgcaaaagcctaaaagaaa	Protospacer
****************************.*

2. spacer 4.4|1582269|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017858 (Campylobacter jejuni strain YQ2210 plasmid pCJDM210S, complete sequence) position: , mismatch: 1, identity: 0.967

tgcagtagcttcgcaaaagcctaaaagaga	CRISPR spacer
tgcagtagcttcgcaaaagcctaaaagaaa	Protospacer
****************************.*

3. spacer 4.4|1582269|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017855 (Campylobacter jejuni strain ZP3204 plasmid pCJDM204S, complete sequence) position: , mismatch: 1, identity: 0.967

tgcagtagcttcgcaaaagcctaaaagaga	CRISPR spacer
tgcagtagcttcgcaaaagcctaaaagaaa	Protospacer
****************************.*

4. spacer 4.5|1582335|27|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to NC_008438 (Campylobacter jejuni plasmid pCJ01, complete sequence) position: , mismatch: 1, identity: 0.963

ttttcggaattcatgttaagcaccgcg	CRISPR spacer
ttttcggaattcacgttaagcaccgcg	Protospacer
*************.*************

5. spacer 3.1|678282|28|LR134530|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 4, identity: 0.857

ccatattttttagtattattgtagcctt	CRISPR spacer
ccatatttattaggattattgtagctct	Protospacer
******** **** ***********..*

6. spacer 3.1|678282|28|LR134530|CRISPRCasFinder matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 5, identity: 0.821

ccatattttttagtattattgtagcctt	CRISPR spacer
cagttttttttagtattattttatcctt	Protospacer
* .* *************** ** ****

7. spacer 4.3|1582203|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to MH153812 (Rhodococcus phage Grayson, complete genome) position: , mismatch: 5, identity: 0.833

aaattttcatatcaatcctttggaactcat	CRISPR spacer
aaatgttcatatcaatccttaggaatgtat	Protospacer
**** *************** ****. .**

8. spacer 4.3|1582203|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to NC_017543 (Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence) position: , mismatch: 5, identity: 0.833

aaattttca---tatcaatcctttggaactcat	CRISPR spacer
---tattcaggttaacaatcctttggaactcat	Protospacer
   * ****   ** ******************

9. spacer 4.5|1582335|27|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010737 (Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence) position: , mismatch: 5, identity: 0.815

ttttcggaattcatgttaagcaccgcg	CRISPR spacer
ttttcggaatacatgttgagcacctac	Protospacer
********** ******.******

10. spacer 3.1|678282|28|LR134530|CRISPRCasFinder matches to MK496767 (Capybara microvirus Cap3_SP_332, complete genome) position: , mismatch: 7, identity: 0.75

ccatattttttagtattattgtagcctt	CRISPR spacer
tcatattttgtagtatttttgtagaaac	Protospacer
.******** ******* ******   .

11. spacer 4.3|1582203|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 9, identity: 0.7

aaattttcatatcaatcctttggaactcat	CRISPR spacer
gttgtttcatatcaatcatatggaactata	Protospacer
.   ************* * *******

12. spacer 4.3|1582203|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 9, identity: 0.7

aaattttcatatcaatcctttggaactcat	CRISPR spacer
gttgtttcatatcaatcatatggaactata	Protospacer
.   ************* * *******

13. spacer 4.3|1582203|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 9, identity: 0.7

aaattttcatatcaatcctttggaactcat	CRISPR spacer
gttgtttcatatcaatcatatggaactata	Protospacer
.   ************* * *******

14. spacer 4.3|1582203|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 9, identity: 0.7

aaattttcatatcaatcctttggaactcat	CRISPR spacer
gttgtttcatatcaatcatatggaactata	Protospacer
.   ************* * *******

15. spacer 4.3|1582203|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 9, identity: 0.7

aaattttcatatcaatcctttggaactcat	CRISPR spacer
gttgtttcatatcaatcatatggaactaca	Protospacer
.   ************* * *******

16. spacer 4.3|1582203|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 9, identity: 0.7

aaattttcatatcaatcctttggaactcat	CRISPR spacer
gttgtttcatatcaatcatatggaactaca	Protospacer
.   ************* * *******

17. spacer 4.3|1582203|30|LR134530|CRISPRCasFinder,CRT,PILER-CR matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 9, identity: 0.7

aaattttcatatcaatcctttggaactcat	CRISPR spacer
gttgtttcatatcaatcatatggaactata	Protospacer
.   ************* * *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

190831 : 198621

Cyanophage(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ46367.1\|190831_191854_+	Ribonucleotide reductase of class Ia (aerobic), beta subunit	A2PYN0	Cyanophage	2.9e-45	33.7
VEJ46368.1\|191843_193214_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	7.0e-95	42.8
VEJ46369.1\|193182_193731_-	acetyltransferase	NA	NA	NA	NA
VEJ46370.1\|193819_194449_+	Protein-L-isoaspartate O-methyltransferase	A0A1J0MC50	Streptomyces_phage	1.6e-09	32.2
VEJ46371.1\|194623_195028_-	acetylornithine/succinyldiaminopimelate aminotransferase	NA	NA	NA	NA
VEJ46372.1\|195167_196259_-	DNA modification methylase (adenine-specific methyltransferase)	E5ERN5	Ostreococcus_lucimarinus_virus	1.2e-60	39.7
VEJ46373.1\|196297_196816_-	Translation initiation factor 3	K4F6Y6	Cronobacter_phage	3.1e-11	28.6
VEJ46374.1\|196812_198621_-\|tRNA	Threonyl-tRNA synthetase	A0A2K9L6B6	Tupanvirus	3.5e-110	36.4

DBSCAN-SWA_2

486906 : 493921

Nitratiruptor_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ46691.1\|486906_487143_-	putative zinc finger/helix-turn-helix protein, YgiT family	M5A9C2	Nitratiruptor_phage	1.3e-09	49.3
VEJ46692.1\|487144_487369_-	Uncharacterised protein	NA	NA	NA	NA
VEJ46693.1\|487379_487757_-	Uncharacterised protein	NA	NA	NA	NA
VEJ46694.1\|487753_487987_-	Uncharacterised protein	NA	NA	NA	NA
VEJ46695.1\|488056_488317_-	Uncharacterised protein	NA	NA	NA	NA
VEJ46696.1\|488297_488993_-	Uncharacterised protein	NA	NA	NA	NA
VEJ46697.1\|488992_489727_-	Uncharacterised protein	NA	NA	NA	NA
VEJ46698.1\|489728_490583_-	putative phage-type endonuclease	H9C0I7	Bdellovibrio_phage	1.3e-09	30.0
VEJ46699.1\|490572_491316_-	DNA-binding protein Roi	X2KQ88	Campylobacter_phage	1.2e-117	92.1
VEJ46700.1\|491319_492057_-	putative phage anti-repressor protein	I6R9D7	Salmonella_phage	4.9e-10	39.8
VEJ46701.1\|492182_492884_-	Uncharacterised protein	M5A9C2	Nitratiruptor_phage	1.2e-10	55.9
VEJ46702.1\|492883_493921_-	GTP pyrophosphokinase ywaC	A0A1B0VBT5	Salmonella_phage	2.8e-27	29.2

DBSCAN-SWA_3

1474144 : 1488570

Synechococcus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ47719.1\|1474144_1474729_-	SAM-dependent methlyltransferase	M4QRS6	Synechococcus_phage	2.2e-29	40.7
VEJ47720.1\|1474725_1475283_-	SAM-dependent methlyltransferase	NA	NA	NA	NA
VEJ47721.1\|1475257_1475998_-	dTDP-glucose pyrophosphorylase	E3SJ89	Synechococcus_phage	1.0e-15	27.0
VEJ47722.1\|1475994_1476309_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA
VEJ47723.1\|1476275_1477517_-	capsular polysaccharide biosynthesis protein	B2ZYD9	Ralstonia_phage	3.2e-22	25.0
VEJ47724.1\|1477513_1477912_-	phosphatase IIIC	A0A2K9L0P7	Tupanvirus	2.2e-09	41.0
VEJ47725.1\|1477966_1478692_-	lipopolysaccharide biosynthesis protein	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	3.0e-52	49.6
VEJ47726.1\|1478688_1479018_-	Uncharacterised protein	NA	NA	NA	NA
VEJ47727.1\|1479020_1479356_-	ketosteroid isomerase	NA	NA	NA	NA
VEJ47728.1\|1479348_1480074_-	glycosyl transferase family 2	A0A1D8KNV9	Synechococcus_phage	7.1e-30	34.1
VEJ47729.1\|1480067_1480706_-	HAD superfamily hydrolase	A0A1D8KNV9	Synechococcus_phage	8.4e-35	39.6
VEJ47730.1\|1480698_1481190_-	Uncharacterised protein	A0A2H4UUJ1	Bodo_saltans_virus	1.8e-08	30.3
VEJ47731.1\|1481191_1481335_-	Uncharacterised protein	NA	NA	NA	NA
VEJ47732.1\|1481432_1481594_+	putative sugar transferase	NA	NA	NA	NA
VEJ47733.1\|1481710_1482634_+	putative sugar transferase	NA	NA	NA	NA
VEJ47734.1\|1482636_1483305_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	7.8e-07	28.3
VEJ47735.1\|1483292_1483898_-	Phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	1.4e-15	35.0
VEJ47736.1\|1483885_1484905_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	1.5e-57	39.3
VEJ47737.1\|1484980_1485919_-	sugar-nucleotide epimerase-dehydratase	A0A0F7LC08	uncultured_marine_virus	1.5e-72	45.9
VEJ47738.1\|1485942_1486977_-	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.5e-142	71.9
VEJ47739.1\|1486987_1488025_-	GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase	M1HKX0	Paramecium_bursaria_Chlorella_virus	2.6e-62	39.7
VEJ47740.1\|1488021_1488570_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D7XFA9	Escherichia_phage	9.8e-16	30.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134530

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection