CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134531	Pragia fontium strain NCTC12284 genome assembly, chromosome: 1	4 crisprs	DEDDh,RT,cas3,cas3-cas2,cas8f,cas5f,cas7f,cas6f,WYL,csa3,DinG,cas3f,cas1	0	7	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134531_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134531_1

1539865-1540192

TypeI-F

I-F

Consensus_repeat	Method
CTGAACCGCCGTATAGGCGGCTTAGAAA	PILER-CR
CTGAACCGCCGTATAGGCGGCTTAGAAA	CRISPRCasFinder
CTGAACCGCCGTATAGGCGGCTTAGAAA	CRT

5 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2

The CRISPR arrays of LR134531_1

>merge|LR134531|1|1539865-1540192|PILER-CR,CRISPRCasFinder,CRT
CTGAACCGCCGTATAGGCGGCTTAGAAAGCAAATAGCTCAAATCGGCGAGGATGGGGAAGCTGAACCGCCGTATAGGCGGCTTAGAAAAACAAGTCGCTCAAATATTCCGATGTGACCAGCTGAACCGCCGTATAGGCGGCTTAGAAAAAGCCCAGCCCGCTTAACTGCGTTCCTCCATCCTGAACCGCCGTATAGGCGGCTTAGAAATCTTAATTTTGAATATAAAAATCCCTGCCAATCTGAACCGCCGTATAGGCGGCTTAGAAATCAGCTACTCGTCACTGGCAACATTATCGATACTGAACCGCCGCATAGGCAGCCCAACCC

>LR134531|1|1|1539865-1540132|PILER-CR
CTGAACCGCCGTATAGGCGGCTTAGAAA	GCAAATAGCTCAAATCGGCGAGGATGGGGAAG
CTGAACCGCCGTATAGGCGGCTTAGAAA	AACAAGTCGCTCAAATATTCCGATGTGACCAG
CTGAACCGCCGTATAGGCGGCTTAGAAA	AAGCCCAGCCCGCTTAACTGCGTTCCTCCATC
CTGAACCGCCGTATAGGCGGCTTAGAAA	TCTTAATTTTGAATATAAAAATCCCTGCCAAT
CTGAACCGCCGTATAGGCGGCTTAGAAA

>LR134531|1|1|1539865-1540192|CRISPRCasFinder
CTGAACCGCCGTATAGGCGGCTTAGAAA	GCAAATAGCTCAAATCGGCGAGGATGGGGAAG
CTGAACCGCCGTATAGGCGGCTTAGAAA	AACAAGTCGCTCAAATATTCCGATGTGACCAG
CTGAACCGCCGTATAGGCGGCTTAGAAA	AAGCCCAGCCCGCTTAACTGCGTTCCTCCATC
CTGAACCGCCGTATAGGCGGCTTAGAAA	TCTTAATTTTGAATATAAAAATCCCTGCCAAT
CTGAACCGCCGTATAGGCGGCTTAGAAA	TCAGCTACTCGTCACTGGCAACATTATCGATA
CTGAACCGCCGCATAGGCAGCCCAACCC

>LR134531|1|1|1539865-1540192|CRT
CTGAACCGCCGTATAGGCGGCTTAGAAA	GCAAATAGCTCAAATCGGCGAGGATGGGGAAG
CTGAACCGCCGTATAGGCGGCTTAGAAA	AACAAGTCGCTCAAATATTCCGATGTGACCAG
CTGAACCGCCGTATAGGCGGCTTAGAAA	AAGCCCAGCCCGCTTAACTGCGTTCCTCCATC
CTGAACCGCCGTATAGGCGGCTTAGAAA	TCTTAATTTTGAATATAAAAATCCCTGCCAAT
CTGAACCGCCGTATAGGCGGCTTAGAAA	TCAGCTACTCGTCACTGGCAACATTATCGATA
CTGAACCGCCGCATAGGCAGCCCAACCC

Protein	Signature genes	Signature genes Name	Protein_function
LR134531.1\|VEJ54902.1\|1545232_1545808_+\|Trp-repressor-binding-protein	unknown	unknown	gnl\|CDD\|223728
LR134531.1\|VEJ54906.1\|1546817_1548209_-\|Succinate-semialdehyde-dehydrogenase-[NADP(+)]-1	unknown	unknown	gnl\|CDD\|143418
LR134531.1\|VEJ54892.1\|1540961_1541873_-\|LPPG:FO-2-phospho-L-lactate-transferase	unknown	unknown	gnl\|CDD\|211689
LR134531.1\|VEJ54900.1\|1544562_1545024_+\|Molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|182642
LR134531.1\|VEJ54880.1\|1532268_1535424_+\|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
LR134531.1\|VEJ54872.1\|1526915_1527734_-\|Uncharacterized-phosphatase-YwpJ	unknown	unknown	gnl\|CDD\|182523
LR134531.1\|VEJ54874.1\|1528629_1530651_+\|Excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
LR134531.1\|VEJ54888.1\|1539062_1539677_+\|CRISPR-associated-protein-Cas6/Csy4,-subtype-I-F/YPEST	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870
LR134531.1\|VEJ54886.1\|1538063_1539059_+\|CRISPR-type-I-F/YPEST-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
LR134531.1\|VEJ54904.1\|1545975_1546677_+\|Inner-membrane-protein-YbhL	unknown	unknown	gnl\|CDD\|198414
LR134531.1\|VEJ54878.1\|1531922_1532195_+\|Uncharacterized-conserved-protein-(DUF2132)	unknown	unknown	gnl\|CDD\|378300
LR134531.1\|VEJ54890.1\|1540435_1540903_+\|PAL-cross-reacting-lipoprotein	unknown	unknown	gnl\|CDD\|225675
LR134531.1\|VEJ54896.1\|1543836_1544316_+\|Molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
LR134531.1\|VEJ54894.1\|1543306_1543822_+\|Molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
LR134531.1\|VEJ54898.1\|1544315_1544561_+\|Sulfur-carrier-protein-moaD	unknown	unknown	gnl\|CDD\|182985
LR134531.1\|VEJ54908.1\|1548766_1550170_+\|ATP-dependent-RNA-helicase-rhlE	unknown	unknown	gnl\|CDD\|236722
LR134531.1\|VEJ54882.1\|1535755_1537057_+\|CRISPR-type-I-F/YPEST-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|378220
LR134531.1\|VEJ54884.1\|1537053_1538025_+\|CRISPR-type-I-F/YPEST-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
LR134531.1\|VEJ54870.1\|1525802_1526870_+\|Sulfate/thiosulfate-import-ATP-binding-protein-CysA	unknown	unknown	gnl\|CDD\|182993
LR134531.1\|VEJ54876.1\|1530708_1531680_-\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134531.1\|VEJ54902.1\|1545232_1545808_+\|Trp-repressor-binding-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	4.44013e-29
LR134531.1\|VEJ54906.1\|1546817_1548209_-\|Succinate-semialdehyde-dehydrogenase-[NADP(+)]-1	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
LR134531.1\|VEJ54892.1\|1540961_1541873_-\|LPPG:FO-2-phospho-L-lactate-transferase	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	9.16785e-116
LR134531.1\|VEJ54900.1\|1544562_1545024_+\|Molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	1.93569e-111
LR134531.1\|VEJ54880.1\|1532268_1535424_+\|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
LR134531.1\|VEJ54872.1\|1526915_1527734_-\|Uncharacterized-phosphatase-YwpJ	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	8.18884e-165
LR134531.1\|VEJ54874.1\|1528629_1530651_+\|Excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
LR134531.1\|VEJ54888.1\|1539062_1539677_+\|CRISPR-associated-protein-Cas6/Csy4,-subtype-I-F/YPEST	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	4.66121e-44
LR134531.1\|VEJ54886.1\|1538063_1539059_+\|CRISPR-type-I-F/YPEST-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
LR134531.1\|VEJ54904.1\|1545975_1546677_+\|Inner-membrane-protein-YbhL	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	1.28335e-74
LR134531.1\|VEJ54878.1\|1531922_1532195_+\|Uncharacterized-conserved-protein-(DUF2132)	gnl\|CDD\|378300	pfam09905, VF530, DNA-binding protein VF530. VF530 contains a unique four-helix motif that shows some similarity to the C-terminal double-stranded DNA (dsDNA) binding domain of RecA, as well as other nucleic acid binding domains.	3.02439e-40
LR134531.1\|VEJ54890.1\|1540435_1540903_+\|PAL-cross-reacting-lipoprotein	gnl\|CDD\|225675	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane].	1.78165e-15
LR134531.1\|VEJ54896.1\|1543836_1544316_+\|Molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	1.98581e-105
LR134531.1\|VEJ54894.1\|1543306_1543822_+\|Molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	5.8187e-102
LR134531.1\|VEJ54898.1\|1544315_1544561_+\|Sulfur-carrier-protein-moaD	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	5.11339e-52
LR134531.1\|VEJ54908.1\|1548766_1550170_+\|ATP-dependent-RNA-helicase-rhlE	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	0
LR134531.1\|VEJ54882.1\|1535755_1537057_+\|CRISPR-type-I-F/YPEST-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	6.17002e-130
LR134531.1\|VEJ54884.1\|1537053_1538025_+\|CRISPR-type-I-F/YPEST-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.96539e-114
LR134531.1\|VEJ54870.1\|1525802_1526870_+\|Sulfate/thiosulfate-import-ATP-binding-protein-CysA	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0

>LR134531.1|VEJ54888.1|1539062_1539677_+|CRISPR-associated-protein-Cas6/Csy4,-subtype-I-F/YPEST
MDSYIDIQILHNPEIASALVMNQLFYQLHLTLVENESPVAVSFPDYHVDADNHRNNTLGNRLRLHGSATALNSLNIQQYLVDISNYALLGEIKPVPDVVQGYAAFVRKHSKSPRDIDRKRQYLLKKAGGEWNDMAEKSLSRFIEKLRCQLPFIHLVSHSSKPAEDGGKNYFHLFINKETGEVQQGKLTKYGLSDVQHRTTVPIF
>LR134531.1|VEJ54886.1|1538063_1539059_+|CRISPR-type-I-F/YPEST-associated-protein-Csy3
MSKTTLKTASVLAFERNFDVSDGVFFQTNWQQRDGFNKVKISEKSVRGTISNRLKNAIASDPTKLDSEIQKANLQTVDMAALSQENDTLVVKWSLKVLPFTGKPCVCNDANYQNKLEQTLKTYIDKVGFDELAKRYASNIANGRFLWRNRMGAEFIDVVVKAEGEKPMTFKAKDYSLMSFDKPDGELEKLANWIKQGLSGEKFVLLHIEAYAKVGSGQEVYPSQELILDKGRKSKTLYQIDEAAAMHSQKISNALRTIDTWYPDAQFPIAVEPYGSVTSMGTAFRQPKAKADFYTLFDAWVLKDQELTLEQRHYVAAILIRGGVFGESGKE
>LR134531.1|VEJ54884.1|1537053_1538025_+|CRISPR-type-I-F/YPEST-associated-protein-Csy2
MKYYLVIPHIKIQNANCISSPLTYGFPAITAFTGAVHALSRKLTETFDVKLEGVAIAAHRCDVQRSRPNNYASDWSFIQSRHPIKKDGNSPSIIEEGYAHLDVSLVIEVIGDIDWNPQEKQLFCDAVYLQLMQQRLAGGSVLSIGTVLRRIHLHNDPKGDNEAIKAIKIQISPSFLLMDSQQALIKHTKKLQAKHPDKTALDALIDLCSIHVHPESVGDARDDISKGNVTWTMSSEKNGWLVPIPVGYKGIAPELGANQVADIRAPQYPTHFVETVYSVGEWRFTYKVNDFNTIFWRHHTDLDNQLFLVSQSSANDENLQTLF
>LR134531.1|VEJ54882.1|1535755_1537057_+|CRISPR-type-I-F/YPEST-associated-protein-Csy1
MPVQRAVHAFINERLQAKLDKAKSPQEINDLKLKYHPHEWIADAARRASQIQFATHTVKGIHPDSKGTNINAQLIKITDGLVSSADLNTHALDIVGNAAALDVYKFLSVSVDENSTILDLVLKEDSQLLSVFSESPQQAKQYLAAFKSITQSSMENAKVYELMKQLLWPVNIDAQQQDNYLNIVPLYPTSFVHQVYQNLQEIRFSDEVKLAKDARKNEKGHEVGYTIVPDIAYVKLGGTKPQNISQLNSERGGRNYLLPSLPPTNQPEDTSAWRVKPPVLESSIFDRVFNYFAKKHIKRFCQNVIDESRNNASVREKRQLIIKDILEVLMRYGEQVRGFDGGWSKHGGLKASQAFWLDPKRADIDAEWAELRETSDWKMELAHDFGVWLNHRLNDAYRDNKYIHLADTEQKEWKYDMADLIKQSIREGWGIFE
>LR134531.1|VEJ54880.1|1532268_1535424_+|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST
MDDFSPSDLKIILHSQKANLYGLEYLLRKTGEDSWQFAQSLQILTVLAALFHDVGKSSVGFQNKLKGIDSGLKGDPFRHEWVSMRIFQAIVGKAETDEQWLTFLKDFNQFEQDYPQWQQDIFKDGIDNDDKQDARYYAWQLLPPLARAVGWLITSHHRMPFYADGEENSERSIDEAFFKHLSPVNGWVQNRYEPVAKKYIQPFWTFESMVTESHSWQKSIARWADKALSDRYLAQQNNFSFFDPLLMHLSRMSLMVGDHTYSGLPRHRQYGDKDFSLYANTEKRDEKASQVKMRQRLDEHLLGVARQSEKFSQLLPKIADNLPSIADHKAFKKHTAEPRFSWQNQAYELACRLRTKSERGGFFGINIASTGCGKTLGNGRIMYGLSDPDKGARFTMALGLRVLTLQTGREYRQRMSLTKEDLAILVGGQAVIDVFNLRHDDKEKRMVLNDETESHQAQINHYGIGSESAQDFQDDYVHFDSPIEDHHLGSVLRDEKAKKLLYAPIVTCTIDHLVGATEIARGGKFIVPMLRLLSSDLILDEPDDFNLEDLPALTRLVNMAGMLGSRILLSSATLPPDMLAGLFEAYQAGRMIWNRHHAIQASPVVCAWFDETEVKSVDCVDKAQFTQENTQFVANRVIRLNQSPILRQGAILPLSVKPKKSLQFNQLAQDLLQGIQRLHSDHQQTCLQTGKRVSFGLIRLSNISPLVELAQALYQSDGLADADIRLCVYHARQLFALRSDLENQLDQILHRKEQQNIFRHPAVASVLAESASPNVIFIVLATPVAEVGRDHDYDWAIVEPSSMRSIIQLAGRIRRHRQEPVSTPNMLMMSTNIRALQQGKDLGAGHTPVFCLPGFESTSNKLSGPELILRSHNSADILLTALDNINSVSRISKPKPQIPLIALEHAAIARVMNKPDGKLNLVNAWWRPSPNSAVQSANPYLFHLQKQTPFRKSVRQTHYICLINDEEKFEFRDMKYITQTEQAKFEVDINIVHNHKVTPWLNQQYKTVLEGLADDIGEKDLNKLGIKFGFVDLDERQLSWKFHPLLGFWPK
>LR134531.1|VEJ54878.1|1531922_1532195_+|Uncharacterized-conserved-protein-(DUF2132)
MQHQSKDPLHGITLERLLTTLVEKYGWESLAREVSINCFKNDPSIKSSLKFLRRTPWARKQVEDLYIHSLNDNLDNKRDEVNNPWGKWVK
>LR134531.1|VEJ54876.1|1530708_1531680_-|Uncharacterised-protein
MLNKAVPLSIALLSLVLTSTQPVLAAKTISSSGQITYSEHTQPSRHYTVISRAPVTFYPPQLDSLQGHQVTGRLAVSFNRGMATNKHENSASQRLYGVIWFSALIESNMLAGTTRLYDMIIQQTNLPGSASDRANYLAQINTALQQKTLMANLNQFANTMPEGVHQLISNQSDVSIWYRPFGNLWGNGPVVMLNNLDTGQGNTLDQTTRIVWSDSAINHDHIGSSGYHKITGNKQRGTVSYSSSHAQNDLDSGVYRNAPPPQSIDSNSVLPAQRVYAGKDGNVYYYDKSQGWQLIQSNGQLKNIEPTANSGVEQDRLIRNHRQ
>LR134531.1|VEJ54874.1|1528629_1530651_+|Excinuclease-ABC-subunit-B
MSKTFKLNSAFQPAGDQPEAIRRLSEGLEDGLAHQTLLGVTGSGKTFTIANVIAQLDRPTMILAPNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEHIEQMRLSATKALLERRDVVLVASVSAIYGLGDPDAYLKMMLHLTRGMIIDQRSILKRLSELQYTRNDQVFQRSTFRVRGEVIDVFPAESDEYALRIELFDDEVERLSVFDPLTGQVQQVVPRFTIYPKTHYVTPRERILEAIEGIKVELADRRRVLLANDKLVEEQRLTQRTQFDIEMMNELGYCSGIENYSRYLSGRGEGYPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFEQLAPQTIYVSATPGNYELEKSGGEIIEQVVRPTGLLDPEIEVRPVGTQVDDLLSEIRIRVEKNERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRVTNSMAKAIGETERRRARQIAYNAENGIVPQGLNKSVEDILELGQGLGTLKNNKGRGKKKAAEPAADYTALTPQALDKKIRELEGKMYEHAQNLEFEEAAHLRDQLQKLREQFIALS
>LR134531.1|VEJ54872.1|1526915_1527734_-|Uncharacterized-phosphatase-YwpJ
MKYQIIALDLDGTLLNSQKQILPESLEALTQARKQGVKVIIVTGRHHVAIHPFYQALQLDTPAICCNGTYSYDYQKQQVLSGTPLTKTQAIRVAQLLRDYPIQSLMYIDNAMTFEQRDDNITRWYAWSERLPENQRPNILHVDTFETAINNAENVWKFATSSEDTDALNHFSALIEDELGLSCERSWHNQIDLAQQGNSKGNRLREWVESQGISMDKVIAFGDNLNDVSMLTQVGLGVAMGNSNQDVKVHADMVIGENETPAIANTIRQYVL
>LR134531.1|VEJ54870.1|1525802_1526870_+|Sulfate/thiosulfate-import-ATP-binding-protein-CysA
MLTLNFKQRLGDLGLDVSVQVPGNGITAVFGLSGAGKTSLINAVSGLTHPDSGEIILNQRVLVDCAKGYFLPPEKRHIGYVFQEARLFPHYSTKGNLQYGMKPSMAAQFDTIVELLGIGHLLKRFPMTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDVPRKRELIPYLERLAHDVNIPILYVTHSLEEILRLAKQVIILDAGKVRASGELETVWASEAMSPWLHQEERSSILNLTLLKQHDNYPMTGLALGDDCLWVSKVDARAGEKLRVRINAADVSLVLALPQQSSIRNILAAEVVDVYTSEDKVDVKLSVGQHYLWARITPWARDELNIVVGQRLYAQIKSVSMSREAW
>LR134531.1|VEJ54890.1|1540435_1540903_+|PAL-cross-reacting-lipoprotein
MKSFILKSIGAACIALSMAGCASNISSDSYSDQQVGQASRTFAGTIVSSRVVNVEGNNEVGGLVGSVAGGVAGSAIGGGFRANALGAIGGALLGGVLGSSVEKGVSQQKAIEYVIQTERDGLITVAQGIDNPLGNGQKVLVIQGKTTRVIADTRP
>LR134531.1|VEJ54892.1|1540961_1541873_-|LPPG:FO-2-phospho-L-lactate-transferase
MRNRTLSDLEHVVALGGGHGLGRVMSALSSLDSRLTGIVTTTDNGGSTGRIRQSEGGIAWGDLRNCLNQLITEPSIASTMFEYRFSGNGELAGHNLGNLMLKALDNLSVRPLDAINLIRNMLKVRAYLIPMSEHPVDLAAIDVEGNLIHGEVNVDSLKQMPQQLMLEPHVAATYEAVEAIDRAELILVGPGSFMTSLMPPLLLKEIAEAMQRSKARIIYIGNLAKELSPAAASLTLQIKMGIIEQAIGGRKIDGIIIGPHTSIEGIQDKVIVQQPLEAEDIPYRHDRDMLHKALECALRKFGE
>LR134531.1|VEJ54894.1|1543306_1543822_+|Molybdenum-cofactor-biosynthesis-protein-B
MGHAASEFIPVSLAVLTVSDSRGEAEDTSGHYLVEAAAAVGHQVVDKRIIKDNIYQIRAVVSGWIADPSVQAIVITGGTGFTARDNTPEAIQPLFDRQVEGFGELFRMLSYEDIGTSTIQSRALAGIANQTIIFAVPGSTNACKMAWERIIVEQLDARHRPCNFLPHLSKK
>LR134531.1|VEJ54896.1|1543836_1544316_+|Molybdenum-cofactor-biosynthesis-protein-C
MSQLTHINASGEAHMVDVSAKSETVREARAEAYVEMSEQTLAMIMQGSHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVSLEAQPENNRVRIESCCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLTKSGGKSGDFQAEA
>LR134531.1|VEJ54898.1|1544315_1544561_+|Sulfur-carrier-protein-moaD
MIKVIFFAQVRELVGTDQLALPAEYPTVEALRQALCSRGNKWPLALEPGKLLMAVNQTLVTAEHPIADGDEVAFFPPVTGG
>LR134531.1|VEJ54900.1|1544562_1545024_+|Molybdopterin-synthase-catalytic-subunit
MSEDKNTRITVSPAAFNVGDEYQWLSQCDDDGAVVTFTGKVRNHNLGDSVSALTLEHYPGMTEKSLAEIIIAARQRWPLQRVNVIHRIGELFPGDEIVFVGVTSAHRSSAFEAAEFIMDYLKTKAPFWKREATQEGDRWVDSRESDKQAAERW
>LR134531.1|VEJ54902.1|1545232_1545808_+|Trp-repressor-binding-protein
MTRVAIVYHSGYGHTAKVAEAVAKGLMEVSDTLVDMVPIDAEGNLPEQAWDALAVADGIIFGSPTYMSGPSWQFKKFADGSSAPWVAQQWKDKLFAGFTNSASMNGDKLSTLDYMFHLSQQHGGIWVGMGMLPSNTKAATRNDVNYIAGVSGLMTVSPADASVEEAPLPGELETARLFGQRIAQLTCRWVR
>LR134531.1|VEJ54904.1|1545975_1546677_+|Inner-membrane-protein-YbhL
MDPRHNGTIVEHANTGLQAFMAQVYGWMTCGLLLTAFTAWFVTGTALQSFIFSSNITFFGLIIVQLGVVFFLSGMLNRISGSLATTLFMLYSVLTGLTMSSIFVAYTSSSIASTFFVTAGTFGAMSLYGYTTKRDLSGLGSMMIMGLIGILLASLVNIFLKSPALTWAITYIGVIVFVGLTAYDTQKLKQIGEQVSLDDREGYRKSSIMGALTLYLDFINLFLMLLRILGDRR
>LR134531.1|VEJ54906.1|1546817_1548209_-|Succinate-semialdehyde-dehydrogenase-[NADP(+)]-1
MSYKTVNPYTGETLKTFPDATDAEVAGAIDKAHNAFLSWKEKPIAERLALLQRVADGLRKEKKEIAKLLTIEMGKLYSEAQGEVELSAQIFEYYVKNAEELLKPEKLPVADPAEGQAILVCDPLGVLLAIEPWNFPYYQIARILAPQLAVGNTLLLKHASNVPQSAAAFERVVLEAGLPEGLLQNLYATRNQVETIINDPRVHGVALTGSEGAGSVIASQAGKALKKCTMELGGADAFVVLADAPLKETVRWAVFGRHWNGGQVCVSSKRMIIDAKIYDDFLSQYQEGVAALKAGDPFDETTTLAPLSSQQAADEVKDKVRQAVAHGATAIEVGPKVPSQGAFVQPTILTNVTPDNPAYYWEFFGPVSMLFKAKDEDDAVRIANDTPFGLGGSVFTARPEHGAEVAKRISTGMIFVNHPTMVKADLPFGGVRRSGFGRELIGLGLKEFANHKLIDIVDINAPF
>LR134531.1|VEJ54908.1|1548766_1550170_+|ATP-dependent-RNA-helicase-rhlE
MSFDSLGLNAEILRAVEEQGYREPTPIQQQAIPVVLSGRDLMACAQTGTGKTAGFTLPLLQLLTANNDSPRGRRPVRALILTPTRELAAQVGENVQEYSRHLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPVKRQNLLFSATFSDEIKGLASKLLHNPASVEVAKRNTPSELVDQKVHLVDKKRKRELLSQMIGQGQWQQVLVFTRTKHGANHLAEQLNKDGITASAIHGNKSQGARTRALDEFKNGKIRVLVATDIAARGLDIDHLPHVVNYELPNVPEDYVHRIGRTGRAECTGEAVSLVCVDEHKLLRDIERLLKLEIPRIAFEGYDPDPTIKAEPIINGRQGRGQGQGPRQNSGRGRSSSQGNGHKDGGPWGNRNGQAAEGRADSKPRSQKPRSDKPAQQKRASFSGARRSGSGGE

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Crispr_ID: LR134531_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134531_3

2376857-2376994

Orphan

Consensus_repeat	Method
GGGAATGACAATATAAATCATAGTTAAGAATTCATGTTTATTTTTCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134531_3

>merge|LR134531|3|2376857-2376994|CRISPRCasFinder
GGGAATGACAATATAAATCATAGTTAAGAATTCATGTTTATTTTTCTGGGGATTCCTCAGCGCTTTCGCAGGGATGACGGTATAAATGCGGGAATGACAATATAAATCATAGTTAAGAATTCATGTTTATTTTTCTGG

>LR134531|3|2|2376857-2376994|CRISPRCasFinder
GGGAATGACAATATAAATCATAGTTAAGAATTCATGTTTATTTTTCTGG	GGATTCCTCAGCGCTTTCGCAGGGATGACGGTATAAATGC
GGGAATGACAATATAAATCATAGTTAAGAATTCATGTTTATTTTTCTGG

Protein	Signature genes	Signature genes Name	Protein_function
LR134531.1\|VEJ55770.1\|2373381_2375001_-\|Aldehyde-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|143440
LR134531.1\|VEJ55777.1\|2379410_2379827_-\|acetyl-coenzyme-A-synthetase-(ADP-forming),-alpha-domain	unknown	unknown	gnl\|CDD\|224745
LR134531.1\|VEJ55764.1\|2366176_2366818_-\|Phosphate-propanoyltransferase	unknown	unknown	gnl\|CDD\|237899
LR134531.1\|VEJ55767.1\|2368371_2371800_-\|4-hydroxyphenylacetate-decarboxylase-large-subunit	unknown	unknown	gnl\|CDD\|275187
LR134531.1\|VEJ55774.1\|2377163_2377679_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|374241
LR134531.1\|VEJ55769.1\|2373082_2373340_-\|Carbon-dioxide-concentrating-mechanism-protein-CcmL	unknown	unknown	gnl\|CDD\|377017
LR134531.1\|VEJ55781.1\|2383291_2385433_+\|Inner-membrane-protein-yccS	unknown	unknown	gnl\|CDD\|130727
LR134531.1\|VEJ55783.1\|2386464_2386959_+\|Cell-division-inhibitor-SulA	unknown	unknown	gnl\|CDD\|182577
LR134531.1\|VEJ55768.1\|2371918_2373067_-\|Aldehyde-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341459
LR134531.1\|VEJ55780.1\|2382798_2383248_+\|Inner-membrane-protein-yccF	unknown	unknown	gnl\|CDD\|225841
LR134531.1\|VEJ55782.1\|2385584_2386229_-\|Regulator-of-competence-specific-genes	unknown	unknown	gnl\|CDD\|377438
LR134531.1\|VEJ55765.1\|2366867_2367308_-\|Propanediol-utilization-protein-PduA	unknown	unknown	gnl\|CDD\|132885
LR134531.1\|VEJ55772.1\|2375354_2375639_-\|Propanediol-utilization-protein-PduA	unknown	unknown	gnl\|CDD\|132885
LR134531.1\|VEJ55776.1\|2378525_2379131_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|380063
LR134531.1\|VEJ55771.1\|2375063_2375342_-\|Propanediol-utilization-protein-PduA	unknown	unknown	gnl\|CDD\|132885
LR134531.1\|VEJ55779.1\|2380521_2382576_-\|Helicase-IV	unknown	unknown	gnl\|CDD\|182930
LR134531.1\|VEJ55778.1\|2380011_2380470_+\|Methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
LR134531.1\|VEJ55766.1\|2367321_2368272_-\|4-hydroxyphenylacetate-decarboxylase-activating-enzyme	unknown	unknown	gnl\|CDD\|275188
LR134531.1\|VEJ55773.1\|2375663_2375942_-\|Propanediol-utilization-protein-PduA	unknown	unknown	gnl\|CDD\|132885
LR134531.1\|VEJ55775.1\|2377682_2378495_-\|Transcriptional-regulatory-protein,-C-terminal	unknown	unknown	gnl\|CDD\|294013

Protein	Function_ID	Function_description	E-value
LR134531.1\|VEJ55770.1\|2373381_2375001_-\|Aldehyde-alcohol-dehydrogenase	gnl\|CDD\|143440	cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.	0
LR134531.1\|VEJ55777.1\|2379410_2379827_-\|acetyl-coenzyme-A-synthetase-(ADP-forming),-alpha-domain	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	6.14306e-64
LR134531.1\|VEJ55764.1\|2366176_2366818_-\|Phosphate-propanoyltransferase	gnl\|CDD\|237899	PRK15070, PRK15070, phosphate propanoyltransferase.	2.80505e-118
LR134531.1\|VEJ55767.1\|2368371_2371800_-\|4-hydroxyphenylacetate-decarboxylase-large-subunit	gnl\|CDD\|275187	TIGR04394, putative_formate_C-acetyltransferase, choline trimethylamine-lyase. Members of this family, homologs to pyruvate formate-lyases and benzylsuccinate synthases, are glycine radical enzymes that appear to act as choline TMA-lyase, that is, to perform a C-N bond cleavage turning choline into trimethylamine (TMA) plus acetaldehyde. The gene symbol is cutC, for choline utilization. The activase, CutD, is a radical SAM enzyme. [Energy metabolism, Amino acids and amines].	0
LR134531.1\|VEJ55774.1\|2377163_2377679_-\|Uncharacterised-protein	gnl\|CDD\|374241	pfam15941, FidL_like, FidL-like putative membrane protein. FidL-like is a family of bacterial proteins that are purported to be membrane proteins.	5.78802e-39
LR134531.1\|VEJ55769.1\|2373082_2373340_-\|Carbon-dioxide-concentrating-mechanism-protein-CcmL	gnl\|CDD\|377017	pfam03319, EutN_CcmL, Ethanolamine utilisation protein EutN/carboxysome. The crystal structure of EutN contains a central five-stranded beta-barrel, with an alpha-helix at the open end of this barrel (Structure 2HD3). The structure also contains three additional beta-strands, which help the formation of a tight hexamer, with a hole in the center. this suggests that EutN forms a pore, with an opening of 26 Angstrom in diameter on one face and 14 Angstrom on the other face. EutN is involved in the cobalamin-dependent degradation of ethanolamine.	1.98729e-17
LR134531.1\|VEJ55781.1\|2383291_2385433_+\|Inner-membrane-protein-yccS	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
LR134531.1\|VEJ55783.1\|2386464_2386959_+\|Cell-division-inhibitor-SulA	gnl\|CDD\|182577	PRK10595, PRK10595, cell division inhibitor SulA.	1.14998e-34
LR134531.1\|VEJ55768.1\|2371918_2373067_-\|Aldehyde-alcohol-dehydrogenase	gnl\|CDD\|341459	cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme requires iron ion for its function. Because many genes in this pathway are present in the propanediol utilization (pdu) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinate synthase-like fold.	1.06745e-174
LR134531.1\|VEJ55780.1\|2382798_2383248_+\|Inner-membrane-protein-yccF	gnl\|CDD\|225841	COG3304, COG3304, Predicted membrane protein [Function unknown].	2.66435e-66
LR134531.1\|VEJ55782.1\|2385584_2386229_-\|Regulator-of-competence-specific-genes	gnl\|CDD\|377438	pfam04993, TfoX_N, TfoX N-terminal domain. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the N-terminal presumed domain of TfoX. The domain is found as an isolated domain in some proteins suggesting this is an autonomous domain.	4.81692e-32
LR134531.1\|VEJ55765.1\|2366867_2367308_-\|Propanediol-utilization-protein-PduA	gnl\|CDD\|132885	cd07045, BMC_CcmK_like, Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain. Bacterial micro-compartments are primitive protein-based organelles that sequester specific metabolic pathways in bacterial cells. The prototypical bacterial microcompartment is the carboxysome shell, a bacterial polyhedral organelle which increase the efficiency of CO2 fixation by encapsulating RuBisCO and carbonic anhydrase. They can be divided into two types: alpha-type carboxysomes (alpha-cyanobacteria and proteobacteria) and beta-type carboxysomes (beta-cyanobacteria). Potential functional differences between the two types are not yet fully understood. In addition to these proteins there are several homologous shell proteins including those found in pdu organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol and eut organelles involved in the cobalamin-dependent degradation of ethanolamine. Structure evidence shows that several carboxysome shell proteins and their homologs (Csos1A, CcmK1,2,4, and PduU) exist as hexamers which might further assemble into extended, tightly packed layers hypothesized to represent the flat facets of the polyhedral organelles outer shell. Although it has been suggested that other homologous proteins in this family might also form hexamers and play similar functional roles in the construction of their corresponding organelle outer shells at present no experimental evidence directly supports this view.	7.14421e-32
LR134531.1\|VEJ55772.1\|2375354_2375639_-\|Propanediol-utilization-protein-PduA	gnl\|CDD\|132885	cd07045, BMC_CcmK_like, Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain. Bacterial micro-compartments are primitive protein-based organelles that sequester specific metabolic pathways in bacterial cells. The prototypical bacterial microcompartment is the carboxysome shell, a bacterial polyhedral organelle which increase the efficiency of CO2 fixation by encapsulating RuBisCO and carbonic anhydrase. They can be divided into two types: alpha-type carboxysomes (alpha-cyanobacteria and proteobacteria) and beta-type carboxysomes (beta-cyanobacteria). Potential functional differences between the two types are not yet fully understood. In addition to these proteins there are several homologous shell proteins including those found in pdu organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol and eut organelles involved in the cobalamin-dependent degradation of ethanolamine. Structure evidence shows that several carboxysome shell proteins and their homologs (Csos1A, CcmK1,2,4, and PduU) exist as hexamers which might further assemble into extended, tightly packed layers hypothesized to represent the flat facets of the polyhedral organelles outer shell. Although it has been suggested that other homologous proteins in this family might also form hexamers and play similar functional roles in the construction of their corresponding organelle outer shells at present no experimental evidence directly supports this view.	9.02189e-36
LR134531.1\|VEJ55776.1\|2378525_2379131_-\|transcriptional-regulator-BetI	gnl\|CDD\|380063	pfam17937, TetR_C_28, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in CgmR (C. glutamicum multidrug-responsive transcriptional repressor), previously called CGL2612 protein. CgmR (CGL2612) from Corynebacterium glutamicum is a multidrug-resistance-related transcription factor belonging to the TetR family. It regulates expression of the immediately upstream gene cgmA (cgl2611) by binding to the operator cgmO in the cgmA promoter. The cgmA gene encodes a permease belonging to the major facilitator superfamily, a protein family composed of bacterial multidrug exporters, and the pair of CgmR and CgmA confers multidrug resistance on C. glutamicum.	7.17516e-19
LR134531.1\|VEJ55771.1\|2375063_2375342_-\|Propanediol-utilization-protein-PduA	gnl\|CDD\|132885	cd07045, BMC_CcmK_like, Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain. Bacterial micro-compartments are primitive protein-based organelles that sequester specific metabolic pathways in bacterial cells. The prototypical bacterial microcompartment is the carboxysome shell, a bacterial polyhedral organelle which increase the efficiency of CO2 fixation by encapsulating RuBisCO and carbonic anhydrase. They can be divided into two types: alpha-type carboxysomes (alpha-cyanobacteria and proteobacteria) and beta-type carboxysomes (beta-cyanobacteria). Potential functional differences between the two types are not yet fully understood. In addition to these proteins there are several homologous shell proteins including those found in pdu organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol and eut organelles involved in the cobalamin-dependent degradation of ethanolamine. Structure evidence shows that several carboxysome shell proteins and their homologs (Csos1A, CcmK1,2,4, and PduU) exist as hexamers which might further assemble into extended, tightly packed layers hypothesized to represent the flat facets of the polyhedral organelles outer shell. Although it has been suggested that other homologous proteins in this family might also form hexamers and play similar functional roles in the construction of their corresponding organelle outer shells at present no experimental evidence directly supports this view.	5.18672e-36
LR134531.1\|VEJ55779.1\|2380521_2382576_-\|Helicase-IV	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	0
LR134531.1\|VEJ55778.1\|2380011_2380470_+\|Methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	2.62118e-95
LR134531.1\|VEJ55766.1\|2367321_2368272_-\|4-hydroxyphenylacetate-decarboxylase-activating-enzyme	gnl\|CDD\|275188	TIGR04395, putative_pyruvate_formate-lyase_activating_enzyme, choline TMA-lyase-activating enzyme. Members of this family are CutD, a radical enzyme that serves as an activase for choline TMA-lyase, CutC. CutC is a glycyl radical enzyme related to pyruvate formate-lyase, and this enzyme, CutD, is related to pyruvate formate-lyase activase. [Energy metabolism, Amino acids and amines].	1.92005e-140
LR134531.1\|VEJ55773.1\|2375663_2375942_-\|Propanediol-utilization-protein-PduA	gnl\|CDD\|132885	cd07045, BMC_CcmK_like, Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain. Bacterial micro-compartments are primitive protein-based organelles that sequester specific metabolic pathways in bacterial cells. The prototypical bacterial microcompartment is the carboxysome shell, a bacterial polyhedral organelle which increase the efficiency of CO2 fixation by encapsulating RuBisCO and carbonic anhydrase. They can be divided into two types: alpha-type carboxysomes (alpha-cyanobacteria and proteobacteria) and beta-type carboxysomes (beta-cyanobacteria). Potential functional differences between the two types are not yet fully understood. In addition to these proteins there are several homologous shell proteins including those found in pdu organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol and eut organelles involved in the cobalamin-dependent degradation of ethanolamine. Structure evidence shows that several carboxysome shell proteins and their homologs (Csos1A, CcmK1,2,4, and PduU) exist as hexamers which might further assemble into extended, tightly packed layers hypothesized to represent the flat facets of the polyhedral organelles outer shell. Although it has been suggested that other homologous proteins in this family might also form hexamers and play similar functional roles in the construction of their corresponding organelle outer shells at present no experimental evidence directly supports this view.	9.64723e-35
LR134531.1\|VEJ55775.1\|2377682_2378495_-\|Transcriptional-regulatory-protein,-C-terminal	gnl\|CDD\|294013	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators. Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.	1.6582e-11

>LR134531.1|VEJ55773.1|2375663_2375942_-|Propanediol-utilization-protein-PduA
MGDALGLIETKGLVACIEAADAMCKAANVELIGYENVGSGLVTAMVKGDVGAVKAAVDSGVESAQRVGEVVTSLVIARPHNDINKIVIKHKA
>LR134531.1|VEJ55772.1|2375354_2375639_-|Propanediol-utilization-protein-PduA
MGDALGLIETKGLVACIEAADAMCKAANVELIGYENVGSGLVTAMVKGDVGAVKAAVESGTESAKRVGEVVTSLVIARPHNDIQKIVSQYKVIE
>LR134531.1|VEJ55771.1|2375063_2375342_-|Propanediol-utilization-protein-PduA
MKEALGLIETKGLVPAIEAADSMCKAANIQLIGYENVGSGLVTVMVKGDVGAVNAAVESGVEAAGKIGVVVSSRVIARPHNDIEKIASQHKA
>LR134531.1|VEJ55770.1|2373381_2375001_-|Aldehyde-alcohol-dehydrogenase
MIALDNDLQSVQNARELIRNAKKAQSIYAKFSQEKIDSIVKHIAREAYLHAEELAKLANEETGFGNWQDKVLKNVFASSRVYEHIKNLKTVGIINDDRVNKVMEVGVPLGIVTALVPSTNPTSTIFYKTLIALKAGNAIIFSPHPNAQQCSRRAIDIVRKAAEEAGAPAGIVDGLSLLTLEATKALMHSKDVSLILATGGEGMVRAAYSSGTPTISGGPGNGPAFIERSADIKQAVNDIITSKTFDNGVICASEQSIIVERCIYNDVHRELLSQGAYFMNDDESNKLAGILLRPNGMINPAIVGKTAISLSERAGFSVPADTRVLISLQDSVSHKNPYSREKLCPVLGLYIEEDWMKACDRVVELLTNEGLGHTLVIHTQNQDVIRQFALEKPVHRILINTPAALGGIGATTNLIPALTLGCGAVGGGSTSDNVGPLNLINVRKVGYGVRSINDLRHPVVESANEPVVATAPACSSNTSIFDDHRFTSGAAIPATSQPAALYANGDDRFGACAISEAKGEITEESVERIIKEVLGRIGR
>LR134531.1|VEJ55769.1|2373082_2373340_-|Carbon-dioxide-concentrating-mechanism-protein-CcmL
MILAKVTGHVVATQKSDELRGCNLLLVTAIGDDQTLIKDKTYVAVDSVGAGTGDLVLVEEYFALNKDRYKAMSIVAIVEKVQRDC
>LR134531.1|VEJ55768.1|2371918_2373067_-|Aldehyde-alcohol-dehydrogenase
MNEFLIKPKIYFGANALECIETLDGRNAFIVTDKAMVKFGLTDKVCAILQRKQINYRLYDDVASDPDISAIVKGMKLMDENFPDLVIALGGGSVIDAAKAVIYALWHCRKDTGLTKPCFIAIPTTSGTGSEVTSFSVIKSRTEKLVIVDEFMLPDIAILDPSLVQSVPPAITADTGMDVLCHALEAYVSRQANDFTDALAEKTVKLVFGHLIDCYNNGNNALAREKMHNASCIAGMSFTNASLGITHSLAHALGGMFAIPHGKANALLMSYVVAFNADFYGSCDNQAARKYAELARMLALPAETTRQGVNSLIVAINVLKEEMNIPTSIKAVGISESAFSERLSSLVHQALKDNCTPTNPRDVSAWDMETLYQQAYAGVAMS
>LR134531.1|VEJ55767.1|2368371_2371800_-|4-hydroxyphenylacetate-decarboxylase-large-subunit
MATFSLTPRVKLLAERLLTKNSSISTERASVIAALANEISGMPQVIKNARLLNEFVKKFPTYIGQDELIVGSQSSNPRGVIFHSEAELKNPSVFNFLCHNASVISPDYMEVITKGFLAIEARMEDRVRSLGSAVSRSALDEVNQCKAAIYACSAAMNLALAFANKAASQATMESNPYRKAELLETAEILNKVPANPAGSFKEACQAFYLFQLVLHLENGSFAVNPMGFDKALYPLYQQDINSGKLTPQQAYEIIECLWLKLCELSEVRATREVDGYPMFDWLLHGGSLNDKEVVQNELSAMLLAARQNIASYNNGLQVRLFSSHQSGQPQFVESMSQSAPAATYQSSTSEMEGLTPRMKRLRDNYLQARPSVSIYRAVTFTEVTKKNLGLPPILLRAKAFRASCETAPILIQNEELIVGHPCGKPRAGAFSPDIAWRWVKDELDTMGTRPQDPFVISEEDKKVIREEIVPFWEGRSLDEICEAQYREAGIWAFSGETYVSDLSYHQINGGGDTCPGYDVLLFTKGMNGIKADAQERLAALSMENPGDIEKIYFYKAAIETCEGVVAYAKRIADRARELAAVENDPVRRAELLTIAQTNENVPANPPKTLQEALQSVWTVESLFEVEENQTGLSLGRLDQYCYPMYQADIESGRITQDQALELLQAFILKCAELMWMSSELGAKYFAGYQPFINLTVGGQKRTGGDATNDLTYLIMDAVRFVKVYQPSLACRIHNQSPQQYMEKIVDVVKAGMGFPACHFDDSHIKMMLGKGFSFEDARDYCLMGCVEPQKSGRIYQWTSTGYTQWPIAIEFVLNRGRMILFDSHQGIDTGELSSLKTFEDFERAVKTQISHIVKLSAIGTVISQRVHKEVAPKPLMSLLVEGCMEKGLDVAAGGAVRNYGPGLIFSGLATYVDSMAAIRKLVYEDKKYTLEYIRDGLLANFEGYDELKRDCLNAPKYGNDDDTVDLFALDITEWTEKECGKYQMLYSKLSHGTLSISNNTPIGELTAATPNGRLAWMPLSDGISPTQGADKQGPTAIIKSVSKMNVETMNIGMVHNFKFLKGLLDTPEGRNGLITLLRTASILGNGQMQFSYVDNEVLKQAQKEPEKYRDLIVRVAGYSAYFVELCKEVQNEIISRTVIEKF
>LR134531.1|VEJ55766.1|2367321_2368272_-|4-hydroxyphenylacetate-decarboxylase-activating-enzyme
MDDILEKKGRIFNVQKYSIYDGDGIRTLIFLKGCNIRCDWCANPEGLSSAFQVMFSQDRCVNCGKCVEVCPTGVHYRQSDAAGNPVHRIDRTAECIGCRKCEEVCITNALDIVGKDVTVREMMDVIMQDYDFYQASGGGVTLGGGELSLQADFAAALLTQCKKMMINTAIETNGTTNLANYEKLAECTDLFLFDVKHIDTEQHKALFGVGNEGVIRNLERLVELNANIVVRMPLVRGYNDSYDAITGAIHYVMELAKRGKIQRIDILPFHQLGKTKYEKLDMIYPVKGDPSYSDEELDRLADFFTQFDFDIRLVRH
>LR134531.1|VEJ55765.1|2366867_2367308_-|Propanediol-utilization-protein-PduA
MNMSLGLIETRGLTATISAADAACKSASVEIIGYKKVGSGLVTVCFQGEVSAVQAAIENGVAAVRPADLVVSSLVIARPDSSVVKLLNQFGRKKGSMDVEKKPVAVKAPVEVAPVIEPVLASQPVEPPVVNHPVKDKKPEGKKSKK
>LR134531.1|VEJ55764.1|2366176_2366818_-|Phosphate-propanoyltransferase
MINQSLLAKIHQKLPGFTANVNSASASIPIGVSNRHVHLSAGDIEALFGPGYQLTPFKELKQPGQYAAKECVMIVGPKGNITNVRVLGPARDKTQLEISKADCFVLGVKAPVRESGDLPDSADALLVGPAGHVHLKSQVICAQRHIHMNERDAQMLNVTNGQTVRVKTAGQRSLIFDEVVVRVKPSFALEFHIDTDEANAAGLKSNDSVFIVA
>LR134531.1|VEJ55774.1|2377163_2377679_-|Uncharacterised-protein
MSVKHHCGKLFFFAALFMLIFTSLPIAWRMLPIRDGAMSCSTKAIMHFEDTKMQSVNANIHFSFFGKGKGSIVVEGYTTSTEGYLYLQRYVQFDYTSERISPLERYYRVKSWQASKSSIDQSPDVVFDYFMREMSDSHDGLLLKAQKMNDKTLLLSSLNSPLYICALKPIR
>LR134531.1|VEJ55775.1|2377682_2378495_-|Transcriptional-regulatory-protein,-C-terminal
MKYKINAFLYYDATEGSLKLDDNGTSDTTLSITANALLYVLIQNPGVMTRDSVMKQVWDDNGLVSSNSNLNQYISLLRKTFRNYGIENIIVTIPKGRLEINPTLTIEVIDNNILHPVLQQQLIHDELADKQQETSDKAKQEKSTEISVDKNWGYAGLFIFIFACVMFFISHLSESASPQGIKLTAVDHDRCELLSIEKMINTAVKEGFIKSFDAVRTRLSINCGEDERFLFYYGDKLQTNGLGRTFLAHCAKHEDNPFSYCENYFYYAWK
>LR134531.1|VEJ55776.1|2378525_2379131_-|transcriptional-regulator-BetI
MIPRMNNNYQRKKDPERMQEQLLQAASVIAARDGIAALSLNAVALQAGVSKGGLLHHFPGKQELIHALFSNLLGRMEKKIVALEQEDPLPEGRFSRAYLMYIAGLGETDESRELALLSLAMPKETVLRKCWRDWMLEHLRHGDEIDRSYIGNLVRYAADGLWLSELTEGPTMTPIERQALVSRLADMTRGGNENIVLPDHK
>LR134531.1|VEJ55777.1|2379410_2379827_-|acetyl-coenzyme-A-synthetase-(ADP-forming),-alpha-domain
MEDRDIWTILREVKTIALVGASDKPDRPSYVVMEFLLSQGYDVIPVSPKLAGQMLLGQPVFANLKDIPRPVDMVDVFRHSDAAYEIAQEAIAIKASVLWMQIGVINHEAEALAQSAGLKVVMNLCPKIEIKRLGMNQS
>LR134531.1|VEJ55778.1|2380011_2380470_+|Methylglyoxal-synthase
MQLTTRIISVEKNIALVAHDHCKQYLLKWAEDNKNTLAKHKLFATGTTGNLIQRATEIPVHSMLSGPMGGDQQIGAMISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNRSTADMLINSGLFEKEIEIAIPDYQKYLQERLK
>LR134531.1|VEJ55779.1|2380521_2382576_-|Helicase-IV
MELKSTSVGQHLAQHPYNKVKMLHAGVEVSGPKHTYTIPFNQLIAIRCKRGLVWGELEFELPQQKVVRLHGTEWHETQRFYHHLMQVWQLWGLEMSQIAADVLLKQMEKIDQRLQQERWLTHQDLVDIQAEIHTSLVSLPLPKERLHEFPNCHPHYQRCVEWIDSGTDIIDATNQRWVQRMLQQHQAFFQHIESQPLNPTQCRAVISGEKNVLVLAGAGSGKTSVLVARAGWLLYRKEAKAEDILLLAFGRKAADEMNARIQQRLATTEIQAKTFHALALSIISQSSKKVPVISKLETSSKARQHFLIEQWHSQCAEKKSQASGWRTWLSQDMGWSLDEGAFWKNSGLSERLATRLDYWIGLMRNHGGSQAEMLALAPEDLRTDFQKKLRLLAPLLKAWKKALKEEGAVDFAGLLHQAVNLIEKGKFISPWRHILVDEFQDISPQRAALVNALRRQQQDSSLFAVGDDWQSIYRFSGSEQSLVADFNRIFGMGEQCALDLTYRFNQGINDITSRYIQQNPAQIKRKIGSLYQGDKNAITILPDSQLEALLNKLSGYVRPEEKVLILGRYHYSKPEVLANASTRWPKLNMEFMTMHASKGQQAEYVIILGLSADRDGFPATENHSVIEQVLLPEVDDFPYAEERRLLYVALTRAKHQVWLMQDTASPSVFVKQLADIGVAVKRKP
>LR134531.1|VEJ55780.1|2382798_2383248_+|Inner-membrane-protein-yccF
MRSILNILNFILGGVFTTLGWLFATVLTVVLIFTLPLTRSCWEITKLSLFPFGNEAIHVDDLNPNERNALMNAGGTALNVFWLVFFGWWLCLAHICAGIAQCITIIGIPVGIANFKIAVIALWPVGRRVVPVEVAQQARIAKAKRQFQQ
>LR134531.1|VEJ55781.1|2383291_2385433_+|Inner-membrane-protein-yccS
MSFILGLRRYFYNSNLLYSIRIFIALSGVVFVPWWYGESLFTIPLTLGVVAAALTDLDDRLTGRLRNLVITLACFFIASVSIELLFPYPWLFALGLLLSTASFILLGSLGQRYATIAFGALLIAIYTMLGVSMYDVWYVQPLLLLIGAIWYNLITLLGHLILPIRPLQDNLARCFEDLARYLDAKSMLFDPDEEHQFTDQLIHATMANGNLVNTLNQTKVSLLTRLKGDRGQRNTRRMLRYYFVAQDIHEQASSSHAQYQQLSKKLRYTDILFRFQRLMTLQSKACLSIAYSIRFHQKYVYDTYQTQALAHLEKSLSNLQANRDLPSSLIQSLHHLLKNLKGIDTQLSNIESEQTVNTPSPQDNTLADDKLTGIKDIWSRIAQNLTPQSELFRHAVRMSIVLFIGYAIIQLAHLQNGYWIMLTSLFVCQPNYNATRARLTLRVLGTIAGILLGLPILYFVPSQEGQLILIVISGVLFFAFRNVRYAYATMFITLLVLFCFNLLGEGFRVAIPRVIDTLIGCGIAWAAVSFIWPDWKFRHISLVLKKAIDANCRYLDAILEQYHQGKNNSVDYRIVRRNAHNRDAELASVISSMAAEPRKDTQQLDQGFRLLCLNHSLLGYISALGAHREKLTESPAILSLLDDAVCYICDALQVNSDDTQSTMLALEKINQQITEMNSASSKNPLVTQQLALIIGLLPEFITLSDKIYTDIKQ
>LR134531.1|VEJ55782.1|2385584_2386229_-|Regulator-of-competence-specific-genes
MNREDTKSLVKDVIGYFSELGELTSRSMFGGYGICKNKVMFGLVSDDKFYLRANKYLESVFISYGMSQFIYNKRGVPVLMKYYHVNESLWQNEEILKRFVTYALSSAMTDMEERLIQEYLRLKDLPNLNIGIERLLRQVGVRTREDLMHLGALRTYIKLREFKRDVKLDLLFSLAGAIKGCHVAALPNSLRNELIEQLRTHDQTKYKELVNYSV
>LR134531.1|VEJ55783.1|2386464_2386959_+|Cell-division-inhibitor-SulA
MRSTQQTYSNALHTLINPMDKSSLGRYGANLVSEIVYDPQNPFTLHLLLPFLQQLGQQPRWQLWLSPERRLNRYWINSLGLPEKKTVALNTTSIEMSVEMIEKALKSGNFSSVIAWLPSMAPNVKEKLRQAAVDGDCYCFILQPLSANQGQFYQPDLFNRAHWH

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Crispr_ID: LR134531_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134531_4

3682253-3682880

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT

10 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL

The CRISPR arrays of LR134531_4

>merge|LR134531|4|3682253-3682880|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTGTATGGCAGTGAACTGGCCAGTGATTATGTTCAACATAAACAGCACTTTCTAAGCTGCCTGTATGGCAGTGAACTTGGTTTTGATTCAACTAATTGCGCTGAATATTTTCTAAGCTGCCTGTACGGCAGTGAACCGACCACTCTCAACAGGTGATGTCTGCGCCAATTTCTAAGCTGCCTGTACGGCAGTGAACGCCAGCTTTAAACATTGACAATATCCGCTTGCTTTCTAAGCTGCCTGTACGGCAGTGAACCTTACGGCGCTTAACCACATTAGAGGGATAGATTTCTAAGCTGCCTGTACGGCAGTGAACCACGGCCGCAGAGATTTCCAGTTCTTGATGCTTTTCTAAGCTGCCTGTACGGCAGTGAACGTGATAAAAATATCGCAAAAGGGACTCGCTTTTTTCTAAGCTGCCTGTACGGCAGTGAACATAATGCTCAGTTAATAACCGTTTCTTGGAACTTTCTAAGCTGCCTGTACGGCAGTGAACAAACGTGCGGGAAAAATACGGCTCAACGCTATTTTCTAAGCTGCCTGTACGGCAGTGAACAAGCCAAACCTATCGAGCGGGCGTTCTCGCATTTTCTAAGCTGCCTGTACGGCAGTGAAC

>LR134531|4|3|3682253-3682880|PILER-CR
TTTCTAAGCTGCCTGTATGGCAGTGAAC	TGGCCAGTGATTATGTTCAACATAAACAGCAC
TTTCTAAGCTGCCTGTATGGCAGTGAAC	TTGGTTTTGATTCAACTAATTGCGCTGAATAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGACCACTCTCAACAGGTGATGTCTGCGCCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAGCTTTAAACATTGACAATATCCGCTTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTACGGCGCTTAACCACATTAGAGGGATAGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CACGGCCGCAGAGATTTCCAGTTCTTGATGCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGATAAAAATATCGCAAAAGGGACTCGCTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATAATGCTCAGTTAATAACCGTTTCTTGGAAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAACGTGCGGGAAAAATACGGCTCAACGCTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGCCAAACCTATCGAGCGGGCGTTCTCGCAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>LR134531|4|3|3682253-3682880|CRISPRCasFinder
TTTCTAAGCTGCCTGTATGGCAGTGAAC	TGGCCAGTGATTATGTTCAACATAAACAGCAC
TTTCTAAGCTGCCTGTATGGCAGTGAAC	TTGGTTTTGATTCAACTAATTGCGCTGAATAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGACCACTCTCAACAGGTGATGTCTGCGCCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAGCTTTAAACATTGACAATATCCGCTTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTACGGCGCTTAACCACATTAGAGGGATAGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CACGGCCGCAGAGATTTCCAGTTCTTGATGCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGATAAAAATATCGCAAAAGGGACTCGCTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATAATGCTCAGTTAATAACCGTTTCTTGGAAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAACGTGCGGGAAAAATACGGCTCAACGCTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGCCAAACCTATCGAGCGGGCGTTCTCGCAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>LR134531|4|2|3682253-3682880|CRT
TTTCTAAGCTGCCTGTATGGCAGTGAAC	TGGCCAGTGATTATGTTCAACATAAACAGCAC
TTTCTAAGCTGCCTGTATGGCAGTGAAC	TTGGTTTTGATTCAACTAATTGCGCTGAATAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CGACCACTCTCAACAGGTGATGTCTGCGCCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAGCTTTAAACATTGACAATATCCGCTTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTTACGGCGCTTAACCACATTAGAGGGATAGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CACGGCCGCAGAGATTTCCAGTTCTTGATGCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGATAAAAATATCGCAAAAGGGACTCGCTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATAATGCTCAGTTAATAACCGTTTCTTGGAAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAACGTGCGGGAAAAATACGGCTCAACGCTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGCCAAACCTATCGAGCGGGCGTTCTCGCAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134531.1\|VEJ56873.1\|3692825_3693464_-\|HTH-type-transcriptional-repressor-fabR	unknown	unknown	gnl\|CDD\|236881
LR134531.1\|VEJ56861.1\|3671539_3671800_-\|Transposase	unknown	unknown	gnl\|CDD\|225511
LR134531.1\|VEJ56869.1\|3686905_3690280_-\|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
LR134531.1\|VEJ56863.1\|3678676_3680524_-\|Outer-membrane-cobalamin-translocator	unknown	unknown	gnl\|CDD\|236730
LR134531.1\|VEJ56867.1\|3684738_3685632_-\|CRISPR-type-I-F/YPEST-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
LR134531.1\|VEJ56872.1\|3692432_3692807_-\|Inner-membrane-protein-yijD	unknown	unknown	gnl\|CDD\|236832
LR134531.1\|VEJ56874.1\|3693613_3694531_-\|Morphology-and-auto-aggregation-control-protein	unknown	unknown	gnl\|CDD\|182999
LR134531.1\|VEJ56855.1\|3665907_3666219_+\|Inner-membrane-protein-yjcH	unknown	unknown	gnl\|CDD\|225704
LR134531.1\|VEJ56858.1\|3668882_3669584_+\|Bacterial-nodulin-like-intrinsic-protein	unknown	unknown	gnl\|CDD\|235453
LR134531.1\|VEJ56856.1\|3666215_3667871_+\|Acetate-transporter-ActP	unknown	unknown	gnl\|CDD\|236495
LR134531.1\|VEJ56870.1\|3690276_3691266_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-F/YPEST	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
LR134531.1\|VEJ56868.1\|3685628_3686906_-\|CRISPR-type-I-F/YPEST-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|378220
LR134531.1\|VEJ56862.1\|3677860_3678652_-\|Glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
LR134531.1\|VEJ56857.1\|3667923_3668475_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|379195
LR134531.1\|VEJ56864.1\|3680932_3682036_+\|tRNA-(uracil(54)-C(5))-methyltransferase	unknown	unknown	gnl\|CDD\|235332
LR134531.1\|VEJ56866.1\|3683683_3684727_-\|CRISPR-type-I-F/YPEST-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
LR134531.1\|VEJ56865.1\|3683036_3683675_-\|CRISPR-associated-protein-Cas6/Csy4,-subtype-I-F/YPEST	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|378224
LR134531.1\|VEJ56860.1\|3670623_3671562_-\|Integrase-core-domain	unknown	unknown	gnl\|CDD\|222853
LR134531.1\|VEJ56871.1\|3691385_3692222_-\|Uncharacterised-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
LR134531.1\|VEJ56859.1\|3669636_3670569_-\|Predicted-esterase	unknown	unknown	gnl\|CDD\|224423

Protein	Function_ID	Function_description	E-value
LR134531.1\|VEJ56873.1\|3692825_3693464_-\|HTH-type-transcriptional-repressor-fabR	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	7.0919e-136
LR134531.1\|VEJ56861.1\|3671539_3671800_-\|Transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.38222e-09
LR134531.1\|VEJ56869.1\|3686905_3690280_-\|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
LR134531.1\|VEJ56863.1\|3678676_3680524_-\|Outer-membrane-cobalamin-translocator	gnl\|CDD\|236730	PRK10641, btuB, TonB-dependent vitamin B12 receptor BtuB.	0
LR134531.1\|VEJ56867.1\|3684738_3685632_-\|CRISPR-type-I-F/YPEST-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	3.32183e-152
LR134531.1\|VEJ56872.1\|3692432_3692807_-\|Inner-membrane-protein-yijD	gnl\|CDD\|236832	PRK11056, PRK11056, YijD family membrane protein.	1.75477e-53
LR134531.1\|VEJ56874.1\|3693613_3694531_-\|Morphology-and-auto-aggregation-control-protein	gnl\|CDD\|182999	PRK11151, PRK11151, DNA-binding transcriptional regulator OxyR; Provisional.	0
LR134531.1\|VEJ56855.1\|3665907_3666219_+\|Inner-membrane-protein-yjcH	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	4.37721e-42
LR134531.1\|VEJ56858.1\|3668882_3669584_+\|Bacterial-nodulin-like-intrinsic-protein	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	3.41913e-144
LR134531.1\|VEJ56856.1\|3666215_3667871_+\|Acetate-transporter-ActP	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
LR134531.1\|VEJ56870.1\|3690276_3691266_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-F/YPEST	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	1.85447e-174
LR134531.1\|VEJ56868.1\|3685628_3686906_-\|CRISPR-type-I-F/YPEST-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	2.2267e-121
LR134531.1\|VEJ56862.1\|3677860_3678652_-\|Glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	6.36155e-121
LR134531.1\|VEJ56857.1\|3667923_3668475_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|379195	pfam13453, zf-TFIIB, Transcription factor zinc-finger.	3.63524e-05
LR134531.1\|VEJ56864.1\|3680932_3682036_+\|tRNA-(uracil(54)-C(5))-methyltransferase	gnl\|CDD\|235332	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated.	0
LR134531.1\|VEJ56866.1\|3683683_3684727_-\|CRISPR-type-I-F/YPEST-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
LR134531.1\|VEJ56865.1\|3683036_3683675_-\|CRISPR-associated-protein-Cas6/Csy4,-subtype-I-F/YPEST	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	2.2481e-61
LR134531.1\|VEJ56860.1\|3670623_3671562_-\|Integrase-core-domain	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.95981e-113
LR134531.1\|VEJ56871.1\|3691385_3692222_-\|Uncharacterised-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.2467e-10
LR134531.1\|VEJ56859.1\|3669636_3670569_-\|Predicted-esterase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	9.47209e-09

>LR134531.1|VEJ56864.1|3680932_3682036_+|tRNA-(uracil(54)-C(5))-methyltransferase
MTPDSLPTDQYNAQLTEKKNRLMSMMAPFSAPEPEVFRSPLSHYRMRAEFRIWHDGDDLYHIMFDQATKQRIRVETFPAASELINRLMPELLAGVKPYKTLRYKLFQIDYLSTMSGEIVVSLLYHRQLDDEWLQHATQLRDALRERGFNLQLIGRASKQKICLDRDYADERLMVAGREMIYRQTENSFTQPNAAVNIHMLEWALSVTEGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSVAAAQFNIAANKIENVQIIRMAAEEFTQAMQGVREFNRLKGIDLTSYQCETIFVDPPRSGLDPQTVTMVQDYPRILYISCNPETLCENLTVLNQTHRVSRLALFDQFPYTHHMESGVLLERIK
>LR134531.1|VEJ56863.1|3678676_3680524_-|Outer-membrane-cobalamin-translocator
MSTKKIVLITSLSAAAFSAWAQEDAEKMVVTANRFPQPVSTVLAPMDVVDRDQIDLWQSKSLTDVLRRLPGVDIAQNGGRGQASSLYIRGTESRHVLVLVDGIRVPISGIMGVADFNQIPISLVQRVEYIRGPRSAVYGSEAIGGVINIITNAEKDGGKIEAGLGSNHYQLYDGSVRQTVGEKTTITAAGAFEDTRGFNIQPGSSYPPDSDKDGFRSKSLWAGIEQQFSSQFSGFLRAYGYSNNTEYDGSYGDERQLYSRNYDTGLRFLQGDFSSQLIASYQTYKDYNYNSAKGMYKDGTTLDDMTQRNIQWGNSYKLDRGVISSGIDWRQEKLESSNNYVSDSYKRDNTGFYITGQKSLSDFTFEGAVRTDKNQQFGWHETWQTAAAWEFIPAYRLTLSYGTGFLAPTLGQLYGSDRFNISSNHDLKPEESRQWEAGLEGDTGPLNWRLAAYRNKITNLIGYESDPITWQGGYYNIESATIKGVEWTGSFATGPLDHRITLEYLDPRRDKDNEVLGRRSKQKAKYQLDWNMFGLDMDVSYQYYGKRYDNNTNEYANTQRRLSSYSTVDVSAAYPITENFTVRGKVANLLDKDYQTAYRYETAEREYTLTASYTF
>LR134531.1|VEJ56862.1|3677860_3678652_-|Glutamate-racemase
MPTALVFDSGVGGLSVYQEIRQLLPDLSIIYAFDSAGFPYGEKSEQVIAERVVKLVGAICQQHQIDIIVIACNTASVVSLPALRDSFDIPVVGVVPAVKPAASLTRNGIVGLLATKVTVNRPYTHELIAKFAQDCQIKLMGSSRLVELAEEKLHGQPVMAEELKQILSPWLNTPQAPDTIVLGCTHFPLLKEELAAVLPKETLLVDSGAAVARRVATLLGDVDWQKVKKAPNIAYCSRLDAEAEKLLPILHQFGFESLTEQSI
>LR134531.1|VEJ56861.1|3671539_3671800_-|Transposase
MIRNSRRNFSPEFRLEAAQLVLDQHYTVTAAATAMNVGKSTMDKWVRQLKEERAGKSPKASPMTPEQLRIRELEKRLQRIEMETIY
>LR134531.1|VEJ56860.1|3670623_3671562_-|Integrase-core-domain
MKWKRYIKKGYRALDVRLPEQFSLVERLRTRFPVAFICNVFGIHRSSYRYWISRPQKPDAKHIVILSLVREVHHASNGSAGARSIADMVSGRGVPLSRWRASKLMKELNIVSCQQPKYRCRKATKERVDIPNHLDRQFAVTEPNQTWCGDVTYIWTGKRWAYLAVVLDLFSRKPIGWAMSFSPDSVLTGKALTMAWESRRKPAGVMYHSDQGSHYTSREFRRLLWRYRIKQSMSRRGNCWDNSPMERFFRSLKSEWVPNCGYANFSEANMAITNYIIGYYSQLRPHQYNGGLTPNESERLFWENSKTVANFC
>LR134531.1|VEJ56859.1|3669636_3670569_-|Predicted-esterase
MILRLLFSISLLLPLSSFSAELLNREDGSAITYYLERNSTSDKSPVLLVIIQGSDCNSVSKNRLIKNQLKYVWPQADVLTVEKYGIDSTLVYSDSVEREDCPKQYMQRDNLEQRVTDIKQVMDVSRDKYHYGSVIVLGGSEGAVVANILASKVDYIDATVSFSGGGRWFKDDVLHSMSVDTDNPSKVKEDAANFGEMVKYILSAKPFELEMSNHGYGWWRSVLSVDQQVVLSSVTSPVLIIQGGKDTSVPPKKVSQMIEILQGAGKNNIDYLFYPELDHVLQDKEGNSQMSEVAKEINIWLKKVMRNSGN
>LR134531.1|VEJ56858.1|3668882_3669584_+|Bacterial-nodulin-like-intrinsic-protein
MFKRLSAEFFGTFWLVFGGCGSAVLAAAFPGLGIGFAGVALAFGLTVLTMAYAVGHISGGHFNPAVTLGLFAGGRFPAKDVVPYIIAQVIGAIAAAAVLWVIADGKAGFDASASGFASNGYGEHSPGGFSLQAAIVAELVLTAFFLIIIHGATDKRAPAGFAPLAIGLGLTLIHLISIPVTNTSVNPARSTGVAIFQGGWALEQLWMFWLVPLIGGVIGGLIYRFLLESKKAD
>LR134531.1|VEJ56857.1|3667923_3668475_-|Uncharacterized-protein-conserved-in-bacteria
MQCPKCKTGVLQPTRLDNLIPVHTCNACGGNWLILEDYLRYKGQLPESAELPNDVVVKSEETKSALLCPVTGSLMLKFRISKDTEHRLDLSPKVNGIWLDKGEWELLNAHGLADKLNAIFTDVWQRQIREAHTQAQFDEMYLSQFGQEDYDKVKDLREWLQQHPQKDRLKAFLLADNPWSAVK
>LR134531.1|VEJ56856.1|3666215_3667871_+|Acetate-transporter-ActP
MKMRPLSLLPLLAISPMVFAEGISGEVKRQPLNIEAIIMFVLFVGATLYITYWASKRTRSRSDYYTAGGKITGLQNGLAIAGDFMSAASFLGISALVYTSGYDGLIYSIGFLIGWPIILFLIAERLRNLGKYTFADVASYRLKQKEIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNYHVAVILVGILMVLYVLFGGMLATTWVQIIKAVLLLAGASFMAIMVMKSVNFDFNELFVQAIKTSPKGVAIMSPGGLVSDPISALSLGLALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAIFLVGGNPIFKDAAGALIGGNNMAAVHLADAVGGSFFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVIKQGKATERDELKVSKVTTIVLGFVAIGLGILFEKQNIAFMVGLAFSIAASCNFPIIILSMYWRRLTTRGAMIGGWLGLISAVTMMVLGPTIWVQILGHAKPIYPYEYPALFSMTIAFFGTWFFSITDSSQSAIQERQLFYPQFIRSQTGYGASESVSH
>LR134531.1|VEJ56855.1|3665907_3666219_+|Inner-membrane-protein-yjcH
MNEHIYQRIESNPRFKDLVRKRDRFAWSLSFITLALYVGFILLIAFEPQWLGTPIAEGTSITRGIPVGIGLIITSFLLTGIYVYRANREFDEINAKILDEAHQ
>LR134531.1|VEJ56865.1|3683036_3683675_-|CRISPR-associated-protein-Cas6/Csy4,-subtype-I-F/YPEST
MNYYQEITLLPDADISLGFLWQNVFQQVHIALVEHKVDTNQSAVAVGFPDYRQAQFPLGSKLRLFAKEQATLEKIAINQWLARLKDYVHIKGIKPVPSDVTYVSFVRKQVKSPERIERDMQQKSALWAAKSGKSLAECLIELEKSKPTDLCRLPFIYLHSQQTKQRSPDKNSKFPLFIEMHPQSASLDGVFDCYGLSAKASGKPAFATVPHF
>LR134531.1|VEJ56866.1|3683683_3684727_-|CRISPR-type-I-F/YPEST-associated-protein-Csy3
MAKNNDTASVLAFEKKLVPSDGYLFGTNWETKEQTTPLALQEKSVRGTISNRFNKKDVGEFTKDPAKLDAKVESPNLQRVDACALGQDQDTLKLHFTLKVLGGLAQPSACNNALFKQSYSAAVGQYIAKHGCLELAKRYATNLANARFLWRNRVGAEEIEVQVKALNKGAEQTWTFDAKQFSTRHFEHNDAQINSLADRIAQALASESGHLMLQIDCYANVGKAQEVYPSEELVLDKGNSKTKKSKILYAVNEHAAMHSQKIGNALRSIDTWYPEYVSEEQSAGAIAIEPYGAVTNLGKAFRTPKDKQDFYTFFDKWARGEALAREEDEHYLVAVLVRGGVFGESDK
>LR134531.1|VEJ56867.1|3684738_3685632_-|CRISPR-type-I-F/YPEST-associated-protein-Csy2
MNVLILPHINIHNANALSSSFTIGFPAMTAWLGFVHALERKLNKAGLPELMLHSAAVVSHRCDVQTHKGEGDFVHSIIGTGNPLDKDGSRSAFIEEARCHLDVSLVIEWGGNEDQVQHADFAEQLQAVIATMKVAGGDVLSMHRPLNQSVDIDNPQETRALLRKLMPGYVLIERRDLMTEAMAQGSDALDALLSYLTVNHRCEQLEDGSVIWRSQRKASGWIVPIATGFQGISPLGEAKNQRDPSVPHRFAESVVTLGEFVMAHKIQHLDDMLWHYHNDLENDLYLCQQVNAINEHQ
>LR134531.1|VEJ56868.1|3685628_3686906_-|CRISPR-type-I-F/YPEST-associated-protein-Csy1
MEEISVLDPAIATFFAERKEAWLKKNISAAMQASEVYEKQQECEQNFLLVNWLPDAARRAGQISVASHPCTFSHPSARKNKNGYVSSIIAKNKPRTDGFLRSGNVSVEPDALGNAAALDVYKFLSLAMSDQRSLLVHIEQESELARQLLNVPTCDYQTLRDGFLKMINTDQDSVSSSKIKQVYFPIADGEYHLLSLLTHSGHLFELRKRLDALRFGEEVKKVRECKKSNHFHPTGYQEIFGLTTIGFGGTKPQNISVLNNQNAGKAHLLASIPPDLKPRDIRLPKTDFFKESFTAWQSKEVLESLHRLFITDYNNIHIREGRDYRIQQYVDLVIEKMWQVRLFLAEYQGELPDELLQEQKIWLYPEFEQQREQEDEWLDKITRQIARSLILHYSRSKVIANPVLLADQELLAIEKVVSSNKENLR
>LR134531.1|VEJ56869.1|3686905_3690280_-|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST
MMVTFISQCEKNALKKTRRVLDAFANRIGDNTWQTLITEEGLLTVKKMLRQTASRSTAVSCHWIRSRSRSQFLWVVGNKKKFNAEGVVPVNSTEKDLLNSEYESDWKYLPLIKALAAMAALLHDWGKSSLLFQAKLNPEIKTKYKGDPLRHEWVSCLLFHQFVTNHTNENHDRAWLNSLINQGIDEPSFNSNSLLREKALAELPSAAALIAWLIVSHHRLPLPKEQELCKAQRENSNASLADLLAKITPSWGYENRFDEYNSLLPKCFEFPLGLLSNAQTWLAELKHRAKDLLHHLPLLEQAMNDGSWRVILHHARLCLMLGDHYYSSQANDPQWHSSSELYANTDPSTKALKQKLDEHLVNVAKVTVNTVKLLPFFESEPLKATELTELAPKACTPKAFRWQDKAVRKIIEWREHTEDKSQGYFVVNMASTGCGKTMANAKIMQALSEDGESLRFILALGLRTLTLQTGDEYKQRLKLQDSDIAVLIGSKAIYELHQSGKQVDKEEIELNQAELGSESMESLQEETDELHWQGELPKEELTTVLTKEKDRKLLYAPVLACTIDHIMAATETKRGGRYILPCLRLMSSDLVIDEIDDFTEDDLIAIGRLVHLAGMLGRKVMISSATIPPDLALGLYNAYRQGWAVFAASRDRTTSINCVYVDEFTAHTELVGSSDENLDAYQAFQQGFIIKRVEKLKQQTAKRKAEIIPCLKQPGLPLEKQYFETVKQAVLDKHQHYFTLDPESQTQVSFGVVRVANIQPCVELTKHLLSSDWPEDTEVRCMAYHSQQVLLLRHEQEKHLDEVLKRKEKAGELPAAFAHPTIRGHLDTCGAKNLIFILVATPVEEVGRDHDFDWAVIEPSSYRSIIQMAGRVRRHRDGEIIAPNIGLLQYNVKGFKGGEERVFNHPGYETDRTTQLVTHDLTQLVDEKTLLQSVNAIARIQKRTTLEPQKKLADLEHFATAKTLGTDQIGKPEVTTASRQERYSRNRRDRQPHPYWSEHLHGHLHGYWWLTALPQYFKRFRKSEPTVQIYLVKKTRSIEFCLREEQGGLCPIERVLNIQHQPLAPEQQQKLWLQRDYCELIGQYSSSAEQEFATSVRYGEISFIYREGNQQYSYNDQLGLVKVK
>LR134531.1|VEJ56870.1|3690276_3691266_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-F/YPEST
MDDLSPSDLKVILHSKRANMYYLEYCRVMQKDGRVLYLTEADKENLYFNIPIANTTVLMMGNGTSITQAAMRMLSQAGVLVGFCGGGGTPLHMATEVEWFTPQSEYRPTEYLQGWLSFWFDDEKRLAAAKQFQNARIEYLQQVWSSDRELALEKFNVQDEVIKQSLDTFHQRTDAASKQSDLLLTEAQLTKALYKYAANNTGKEGFSRQHQPDKKCTDKANGFLNHGNYLAYGLAASCLWVLGIPHGLAVMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKENASEQEFRQQILQAFIEHKALDFMFDTVKRVALQGQSEEESEDRPL
>LR134531.1|VEJ56871.1|3691385_3692222_-|Uncharacterised-protein
MTIHTLQERHLFLEMLALWQGYIRNKDLVDQFVITRQQAYQDIRAYQERYPERLNKMASGPYQFSAQYIYQAPKHSLEHYLQWLSTGQFYAPQPALNSVLGEQCSVPQRYVSPQVIAVLTDAIRQQKRVELGYVSLSNPEWQGRIFHPHSFIKTGLRWHMRGYCEKSQDYRDLVLSRCRGEAELLDASEHTKDDDQVWNTQVDLIFAPDPRLNEAQREVIVHDYQMDNGQLHITTRAALVDYLLKEMQVKTQYLEGTPEAQQLILLNPRDVKPWLFDR
>LR134531.1|VEJ56872.1|3692432_3692807_-|Inner-membrane-protein-yijD
MTEQVNKEYGILLLAFIAGLSVNGSFNALFDSVIAFSIFPLIALGFSIYCLHQRYVTHPMPAGTPMLAASCFLLGIFLYSAVIRAEYAGMGSNFLLTVICVALVFWIGYKLNITARHKVASQTD
>LR134531.1|VEJ56873.1|3692825_3693464_-|HTH-type-transcriptional-repressor-fabR
MIGVRAQQKERTRRSLIEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGDNPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELANQMPRSFSEAQAEAMVTIVFSAGAEALDIDAAQRKQLEERLVLQLRMISKGVYYWYRREQEKGVVPISL
>LR134531.1|VEJ56874.1|3693613_3694531_-|Morphology-and-auto-aggregation-control-protein
MNIRDLEYLVALSEHCHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQAGMLLVDQAKTVLREVKVLKEMASQQGETMSGPLHIGLIPTVAPYLLPHIIPMLHQEFPKLEMYLHEAQTKDLLAQLDSGKLDCAILALVKETESFIEIPLYDEPMRLAIYSDHPWAGRDKIMMSELAGEKLLMLEDGHCLRDQALGFCFQAGADEDSHFRATSLETLRNMVAAASGITLLPLLAAPPERERDGIYYLPCYKPEPKRTIGLVYRPGSPLRARYEQLADTIAGHMPGVIDSEQKRTS

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Crispr_ID: LR134531_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134531_5

3737382-3737502

Orphan

Consensus_repeat	Method
TTACCCTTGCTTTTTAATGTTAAAATTATAACAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR134531_5

>merge|LR134531|5|3737382-3737502|CRISPRCasFinder
TTACCCTTGCTTTTTAATGTTAAAATTATAACATGGCTCACACGGCATAAAACCCGGGAAATGGATTAATTAGGTTATTTTGCAAAGTTACACTTGCTTTTTAATGTTAAAATTATAACAT

>LR134531|5|4|3737382-3737502|CRISPRCasFinder
TTACCCTTGCTTTTTAATGTTAAAATTATAACAT	GGCTCACACGGCATAAAACCCGGGAAATGGATTAATTAGGTTATTTTGCAAAG
TTACACTTGCTTTTTAATGTTAAAATTATAACAT

Protein	Signature genes	Signature genes Name	Protein_function
LR134531.1\|VEJ56904.1\|3728913_3729678_+\|Deoxyribose-operon-repressor	unknown	unknown	gnl\|CDD\|182644
LR134531.1\|VEJ56917.1\|3744944_3745478_-\|Periplasmic-protein-CpxP-precursor	unknown	unknown	gnl\|CDD\|171704
LR134531.1\|VEJ56900.1\|3725394_3726405_+\|Fructose-1,6-bisphosphatase-1-class-2	unknown	unknown	gnl\|CDD\|224411
LR134531.1\|VEJ56906.1\|3731393_3732695_-\|Pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180387
LR134531.1\|VEJ56914.1\|3741766_3742537_+\|Triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
LR134531.1\|VEJ56919.1\|3746319_3747699_+\|Sensor-protein-CpxA	unknown	unknown	gnl\|CDD\|236532
LR134531.1\|VEJ56915.1\|3742610_3743573_-\|6-phosphofructokinase-isozyme-1	unknown	unknown	gnl\|CDD\|235111
LR134531.1\|VEJ56905.1\|3729821_3731171_-\|putative-outer-membrane-porin-protein	unknown	unknown	gnl\|CDD\|335381
LR134531.1\|VEJ56901.1\|3726476_3727118_-\|Orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
LR134531.1\|VEJ56908.1\|3733946_3735899_-\|2',3'-cyclic-nucleotide-2'-phosphodiesterase/3'-nucleotidase-precursor	unknown	unknown	gnl\|CDD\|236506
LR134531.1\|VEJ56909.1\|3735978_3737157_-\|Nucleoside-transport-system-protein-nupC	unknown	unknown	gnl\|CDD\|224883
LR134531.1\|VEJ56916.1\|3743917_3744796_-\|Ferrous-iron-efflux-pump-FieF	unknown	unknown	gnl\|CDD\|181919
LR134531.1\|VEJ56918.1\|3745624_3746323_+\|Transcriptional-regulatory-protein-YycF	unknown	unknown	gnl\|CDD\|182864
LR134531.1\|VEJ56911.1\|3738490_3739354_+\|YicC-like-family,-N-terminal-region	unknown	unknown	gnl\|CDD\|236993
LR134531.1\|VEJ56903.1\|3728155_3728515_-\|Uncharacterised-protein	unknown	unknown	unknown
LR134531.1\|VEJ56912.1\|3740028_3740775_+\|Ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|182844
LR134531.1\|VEJ56907.1\|3732750_3733935_-\|Phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
LR134531.1\|VEJ56902.1\|3727187_3727904_-\|Ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
LR134531.1\|VEJ56910.1\|3737568_3738249_+\|Deoxyribose-phosphate-aldolase-1	unknown	unknown	gnl\|CDD\|234784
LR134531.1\|VEJ56913.1\|3740935_3741601_+\|Protein-of-uncharacterised-function-(DUF1454)	unknown	unknown	gnl\|CDD\|369310

Protein	Function_ID	Function_description	E-value
LR134531.1\|VEJ56904.1\|3728913_3729678_+\|Deoxyribose-operon-repressor	gnl\|CDD\|182644	PRK10681, PRK10681, DNA-binding transcriptional repressor DeoR; Provisional.	2.08886e-137
LR134531.1\|VEJ56917.1\|3744944_3745478_-\|Periplasmic-protein-CpxP-precursor	gnl\|CDD\|171704	PRK12751, cpxP, periplasmic stress adaptor protein CpxP; Reviewed.	2.76351e-33
LR134531.1\|VEJ56908.1\|3733946_3735899_-\|2',3'-cyclic-nucleotide-2'-phosphodiesterase/3'-nucleotidase-precursor	gnl\|CDD\|236506	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase.	0
LR134531.1\|VEJ56906.1\|3731393_3732695_-\|Pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|180387	PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed.	0
LR134531.1\|VEJ56914.1\|3741766_3742537_+\|Triosephosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	1.2237e-144
LR134531.1\|VEJ56919.1\|3746319_3747699_+\|Sensor-protein-CpxA	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	0
LR134531.1\|VEJ56915.1\|3742610_3743573_-\|6-phosphofructokinase-isozyme-1	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
LR134531.1\|VEJ56905.1\|3729821_3731171_-\|putative-outer-membrane-porin-protein	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	1.09441e-10
LR134531.1\|VEJ56900.1\|3725394_3726405_+\|Fructose-1,6-bisphosphatase-1-class-2	gnl\|CDD\|224411	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism].	0
LR134531.1\|VEJ56909.1\|3735978_3737157_-\|Nucleoside-transport-system-protein-nupC	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	2.31133e-140
LR134531.1\|VEJ56916.1\|3743917_3744796_-\|Ferrous-iron-efflux-pump-FieF	gnl\|CDD\|181919	PRK09509, fieF, CDF family cation-efflux pump FieF.	0
LR134531.1\|VEJ56918.1\|3745624_3746323_+\|Transcriptional-regulatory-protein-YycF	gnl\|CDD\|182864	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR.	3.45181e-157
LR134531.1\|VEJ56910.1\|3737568_3738249_+\|Deoxyribose-phosphate-aldolase-1	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	1.15925e-122
LR134531.1\|VEJ56901.1\|3726476_3727118_-\|Orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	9.38277e-90
LR134531.1\|VEJ56912.1\|3740028_3740775_+\|Ferredoxin--NADP-reductase	gnl\|CDD\|182844	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional.	7.97524e-180
LR134531.1\|VEJ56907.1\|3732750_3733935_-\|Phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
LR134531.1\|VEJ56902.1\|3727187_3727904_-\|Ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	1.15111e-176
LR134531.1\|VEJ56911.1\|3738490_3739354_+\|YicC-like-family,-N-terminal-region	gnl\|CDD\|236993	PRK11820, PRK11820, YicC family protein.	1.03122e-147
LR134531.1\|VEJ56913.1\|3740935_3741601_+\|Protein-of-uncharacterised-function-(DUF1454)	gnl\|CDD\|369310	pfam07305, DUF1454, Protein of unknown function (DUF1454). This family consists of several Enterobacterial sequences of around 200 residues in length which are often known as YiiQ proteins. The function of this family is unknown.	1.39306e-62

>LR134531.1|VEJ56909.1|3735978_3737157_-|Nucleoside-transport-system-protein-nupC
MKYIIGVLSIIIICGLAALVSKKRKEIRLRPIFVMLATQFIMAMLLLKTNVGNTIIMTFAKGFGYLLSYAQEGVNFAFGNLVNQGEMSFFVSVLLPIVFISALIGILQHWHILGFIVKYIGLGLSKINGMGKLESYNAVASAILGQSEVFISIKKQLGLLPEHRLYTLCTSAMSTISMAIVGAYMQLLDPRYVVTAMVLNLLGGFIIASIINPYQVQPEEDILTIQEERQSFFEMLSEYILDGFKVAVIVAAMLIGFIALITMANSIFTAVLGISFQEILGYIFAPLAFLVGIPWEEAVQAGGIMATKIVSNEFVAMHLLMNSEFKFSEHSIAVISVFLVSFANFSSIGIIVGAIKALDSRQGNTAARFGLKLLYGASLVSFLSATVVGLLY
>LR134531.1|VEJ56908.1|3733946_3735899_-|2',3'-cyclic-nucleotide-2'-phosphodiesterase/3'-nucleotidase-precursor
MLLRPSLPLSFLAVLIAGTVNAATVDLRIMETTDVHGNMMDYDYYKDKMTDKYGLVRTAKLIEQARKEATNSVLVDNGDLIQGSPMADYAAASGLKKGEIHPVYKVMNNLDYTVGSLGNHEFNYGLDYLKRALSGARFPYINANIFDAETGKPYFKQYLIVDTPVKDRDGKEHTVRVGYIGFVPPQVTLWDKSNLNGKVVTKDITETAKQLVPEMRKQGADVVVAIAHSGLSTDPYKVLAENSVYYLSEVEGIDAIAFGHAHGIFPGKDFADVKGADIEKGTLNGIPAVMPGHWGDHLGVIDLVLEGETNKWKITSGTAKARPVFDKEGKQVIKAEDKLVDIIKHDHQATRDFVNKPIGKIDTNVNSYLALVQDDPLIQIVRDAQKAYVEHYIQGDPDLDGYKVISAAAPFKAGGRKNDPAAFVNINKGELTFRNAADIYQYSNTLAAVKITGQDVREWLECSAGMYNQIDVNSAKPQHLFNWDGFRTYNFDMFDGVSYQIDVTKPARYDRDCNLVNPNSHRITNLTYEGKPLDAKQKFLAAVNNYRAYSGTFSGTGEKNVAFSAPDEVRSVVANYISSETKKHGVLTPATKYGWSIAPIAAPQQLDIRVETSPSETAAAFIKDHAQYPMTFVGHDDIGFAVYKIDLQKK
>LR134531.1|VEJ56907.1|3732750_3733935_-|Phosphopentomutase
MLTPFKRIHVVVIDSVGIGAAPDAAQFGDVGADTLGHIAESVSQLNVPNMAGLGLANIRPLKGVSKAEQPSGYYGKMQEISASKDTLTGHWEMMGIYVDQPFSVFPDGFPAELIEKIEAFSGRKVIGNKPASGTDVLDELGEQQLASGDLIVYTSADSVLQIAANEAVIPLEELYRICEYCREITRDEPYRIGRIIARPYVGDCRENFTRTTNRHDYALKPFTPTVLDALKSAGNDVVALGKISDIFDGEGITRSIRTSGNMDGMDKFISLLSEPFHGISFLNLVDFDALYGHRRDVQGYAQALEEFDARLPAVFAGMGQDDLLIITADHGNDPTAEGTDHTREFVPLLAYSNRFKQGGDLAIRQAFADLGATIAENFGLEKPNYGDSFLNKLI
>LR134531.1|VEJ56906.1|3731393_3732695_-|Pyrimidine-nucleoside-phosphorylase
MRMVDLIAKKRDGKELTTEEINFFINGYTDSSIPDYQASALAMAIYFQDMNDRERADLTMAMVNSGEVIDLSEIDGVKVDKHSTGGVGDTTTLVLAPLVAALDIPVAKMSGRGLGHTGGTIDKLEAVEGFHVEITKEQFIDLVNRNKVAVIGQTGNLTPADKKLYALRDVTGTVNSIPLIAGSIMSKKIAAGADAIVLDVKTGAGAFMKTNEDAIELAKAMVRIGNNVGRKTMAVISDMSQPLGYAIGNSLEVQEAIDTLRGQGPEDLTELVMALGCQMVVLAGKADTLEGARVLLEEVIANGKALEKFRTFLESQGGNGAVIDDPNALPQAAHLIEVPAKTSGVVSNIVADELGVAAMLLGAGRATKEDTIDLSVGLMLRKKVGDKVEAGESLVTVYANRPDVAAVIDKIYNNITISDRAEVPTLIHTIITE
>LR134531.1|VEJ56905.1|3729821_3731171_-|putative-outer-membrane-porin-protein
MRINTLHKLSVALLTCALLPLSAYAESQKNDTTPEFLADFVNNSQLDFSLRNVFKNLNTSDYGERSVQTAWGQGFTLDYRSGYLADMIGVDASYYSVLKLANSDEFYGRSVLYNDNGEAKGFNKMGQIYGKFRLGDDDTYFHLYSGWKELRKWGALNISTRAIPSSYLGWSAEAGTGPLRLRGAYVTRYTDRDSPEKVHFRSADRKRQISNISTADVKYQLQDYSALYFWGESHDYMRRQGLELEWKPSTMAGNKLRVTSLFYLNQGLDNWTEMSTSHKTFNKNAYHYALMAQWQADRWKHKVGASYTVAKLDDGLGRFEWHLAKNSRGTFNSMADSWGNDYVGHKEKMIAWTPGYAVTPEIEVGAVTNYGWGMKYKGVSIDRGETLLYTRWAPVDGKLKNLSVQLSGGPSWNFQSKRNKPILNESQDKALLAQNHSIELQIDYKFKIF
>LR134531.1|VEJ56904.1|3728913_3729678_+|Deoxyribose-operon-repressor
MDTPRGERLQKLIQTLKEGDKIHLRDAAQSLGVSEMTIRRDLNDNPYSLIVLGGYIVIDPKNNNVNHYFLSEQKSKNIDEKRYIGKLAAQQIEENDTVFFDSGTTLPFIIENIPDELRFTGVCYSLNTFLSLKNKPNCTVILCGGEFKTSSYIFTPVGANNELDFIRPNKAFISAAGVSLEHGVTSFILDEVRMKMQAMSASKQKILIADAYKFDKTKPGRFGTLNQFDKIITDQQPDKSYLDYCYQHDIGVIY
>LR134531.1|VEJ56903.1|3728155_3728515_-|Uncharacterised-protein
MKKMSILVLVVLAVAGCASKYSIMTKYHKQCDAQNPEANAYVGYVDCMNALLAADHKVSQGSGAINIMATANKYKQQVIDGKMTGKEAKLAFQNQYKRFIFNFGNPESTESVAAAPAVN
>LR134531.1|VEJ56902.1|3727187_3727904_-|Ribonuclease-PH
MRPEGRSAQQVRPITFTRHYTKHAEGSVLVEFGETKVLCTATIEEGVPRFLKGQGQGWITAEYGMLPRSTHTRNPREAAKGKQGGRTLEIQRLIARSLRAAVDLTLLGEFTITLDCDVLQADGGTRTASISGACVALADALNSLVAKGKLKKNPMKCMVAAVSVGIVGGEALCDLEYVEDSAAETDMNVVMTDDGRMIEVQGTAEGEPFTHEELLELLALARQGIDTIIQAQIAVLAQ
>LR134531.1|VEJ56901.1|3726476_3727118_-|Orotate-phosphoribosyltransferase
MKPYQRQFIEFALNKQVLKFGEFHLKSGRVSPYFFNAGLFNTGRDLALLGRFYAAALVDSGIAFDLLFGPAYKGIPIATTTAVALSEHHDIDIPYCFNRKETKDHGEGGSLVGSPLTGRVMLVDDVITAGTAIRESMEVIRQHDATLSGVLISLDRQERGRGELSAIQEVKRDYQCEVITIVTLDDLVEYLTEKPEMVEQLAAIQAYRSEFGV
>LR134531.1|VEJ56900.1|3725394_3726405_+|Fructose-1,6-bisphosphatase-1-class-2
MKRELAIEFSRVTEAAALAGYRYLGRGDKNKADGAAVEAMRIVLNQVNIDGEIVIGEGEIDEAPMLYIGEKVGTGHGDAVDIAVDPIEGTRMTAMGQANALSVLAVAEKGAFLHAPDMYMEKLVVGPGAKDTIDLNLPLRENLIRIAAKLEKPLESLTVITLAKPRHDGVIAEMQQLGVKVFAIPDGDVAASILTCMPDSEVDVMYGIGGAPEGVISAAVIRALDGDMQSRLLARHQVKGDSEENRRIGEQELERCRQMGIEAGKVLKLGDMARNDNIIFSATGITKGDLLNGIQRKGNMATTETLMIRGKSRTIRRIQSIHYLDRKDPALCDILL
>LR134531.1|VEJ56910.1|3737568_3738249_+|Deoxyribose-phosphate-aldolase-1
MNQQQIDYANYIDHTLLNMDATEAQITKLCEEAITHHFYAVCVNSGYVPLAAKCLKDTNVTVCSVIGFPLGAGLTSSKVFEAQAAIEAGAQEIDMVINVGWLKSGKFDEVKHDIQMVQNACGNVPLKVILETCLLTDEEIVQVCHMCKEIGTAFVKTSTGFSKSGASVHATKLMRESVGPVMGVKSSGGVRDRETAKAMIEVGATRIGTSSGVFIVGADSQDKSSY
>LR134531.1|VEJ56911.1|3738490_3739354_+|YicC-like-family,-N-terminal-region
MIRSMTAYARHETKGEWGSATWELRSVNQRYLETYIRLPEQFRSLEPVIRERLRTRLTRGKIECNLRFDPDPSAQTELMLNKELAAQLVQAANWVKMQSDEGEIDPVDILRWPGVMSAKSQDLDAISSELMASLEIALTDFIDAREREGAALKALIEQRLAGVSTEVQKVRAHMPEVLVWQRERLLSKLEEAQVQLDNNRLEQELVMLAQRVDVAEELDRLEAHVKETYVILKKPEAVGRRLDFMMQEFNRESNTLASKSINSEVTTSAIELKVLIEQMREQIQNIE
>LR134531.1|VEJ56912.1|3740028_3740775_+|Ferredoxin--NADP-reductase
MADWVSGKVTRVDNWTDGLFSLIIQAPVRSFTAGQFAKLALDVDGERVQRAYSYVNSPDSSELEFYLVKVPEGKLSPKLHQLKVGDDILVTQDAAGFFVLEEVPVADTLWMLSTGTAIGPFLSILQLGQDLERFNHIVLVHAVRYNQDLNYLPLMRELEKRYAGKLRIQTIVSREKTTDSLHGRIPALIESGELESSVGLTINPENSHVMLCGNPQMAKDTQQLLKQQRGMSKHLRRKPGHITTEQYW
>LR134531.1|VEJ56913.1|3740935_3741601_+|Protein-of-uncharacterised-function-(DUF1454)
MGHDTLTKAGIFSATLLTLMLSNTAFAVEPNASSSESSSAKHSETVVAPYLREDAPTFNLTVAQFREKFNTTYPHMVLAEYKTIKTLEVKSPLIRAASRINNTLYSSVAIDKSQRTIRSLQLTYLPPPPSEEKPEKPENIAKAEKADRAVLANYMAAFISLFEPTSTLEKCQNKANELLEKGKGSPFYQQKEGTLRFVIADHNEKGITFAIEPIKLSLSDK
>LR134531.1|VEJ56914.1|3741766_3742537_+|Triosephosphate-isomerase
MRHPLVMGNWKLNGSKHMVNELIAGLRHELSNVDGCDVAIAPPFIYLDQAKQAISDSHIALGAQNVDINLSGAFTGETSANMLKDIGAKYVIIGHSERRTYHKESDELIAEKFAVLKEAGLIPVLCIGETEAENEAGQTQAVCARQLDAVLKTMGAPALKGSVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKHDADVAAKIIIQYGGSVNDSNAAELFSQPDIDGALVGGASLKADAFAIIVKAAAKAKKAK
>LR134531.1|VEJ56915.1|3742610_3743573_-|6-phosphofructokinase-isozyme-1
MIKRIGVLTSGGDAPGMNAAIRGVVRAALSQGLEVFGIYDGYQGLCEDRMEQLDRYSVSDVINRGGTFLGSVRYPEFRDPAAREKAIENLKRRNIDALVVIGGDGSYMGAKLLTERGFPCIGLPGTIDNDVAGTDYTIGFFTALDTVVEAIDRLRDTSSSHQRISIVEVMGRHCGDLTLAAAIAGGCEFIVLPEIEFNRDDLVAEIMAGISKGKKHAIVAITEHICDINELAKYIQQKTHRDTRATVLGHIQRGGSPVAYDRILASRMGAYAIDLLLQGYGGRCVGIQNEKMVHHDIIDAIENMKRPFKGDWLKTAKELF
>LR134531.1|VEJ56916.1|3743917_3744796_-|Ferrous-iron-efflux-pump-FieF
MSDQYGRLVKTAALCATTVATALLIIKVVAWWLTGSVSLLAALVDSLVDIAASLTNLLVVRYALQPADHQHTFGHGKAESLAALAQSMFISGSAIFLFLTGFQHLVNPQPLKAAGVGIGVTIVSLITTLCLVAFQRWVVRKTQSQAVRADMLHYQSDIFMNGAILAALGFSLYGFLHADAIFALAIGCYILYSALRMAYDAVQTLLDRALPDEERQEIMNIALSWPGIQGAHDLRTRQSGPTRFIQLHVEMDDNLPLIEAHKIADNVEQDILRRFPNSEVIIHQDPCSVVIS
>LR134531.1|VEJ56917.1|3744944_3745478_-|Periplasmic-protein-CpxP-precursor
MHKVNILIMASMLALSTSTVLAADGKNVEPENCSETGACLGSVSTTNSSEAVKAQIMHQHSLFDGLNLTVKQRQQMRDLIRQNYHDAMPKMYMDNMEAMHNLVIADHFDENAARAQAEFIAKAQVERQVALAKVHHQFYSLLTPEQRIVFNRNHSERMEKMQQHLDQMRKYEELDPQ
>LR134531.1|VEJ56918.1|3745624_3746323_+|Transcriptional-regulatory-protein-YycF
MSKILLVDDDREITSLLEELLELEGFDVIVAYDGEQAINMMDNSVDLLLLDIMMPKKNGIDTLKELRQNYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELIARIRAILRRSNWSEQQQEPEVSSNTLQVDKLRLNPGRQEASFDGQTLDLTGTEFTLLYLLAQRLGQVVSREYLSQEVLGKRLTPFDRAIDMHISNLRRKLPERHDGLPWFKTLRGRGYLMVTVT
>LR134531.1|VEJ56919.1|3746319_3747699_+|Sensor-protein-CpxA
MITFNSLTTRIFAIFWLTLTLVVMVVLMVPKLDSRQLSQVMDSERRQGTMLEQHVEAELASTPNSDLMWWRRLLQSIEKWSPPGQRMLLVTSEGRIVGVLKRNEMQMVRNFIGQADNADYPMKKKYGLQEMIGPFSVRDREEHYQLYLIRPANSPQSDFINLLFDRPLLLLAVTMVISIPLLLWLAWSLAKPARKLKQAADEVARGNLRESPELEFGPLEFRAAGASFNQMVNGLDRMVKAQQRLISDISHELRTPLTRLQLATALMRRRHGESKELLRIETEAQRLDNMINHLLALSRNQYKSEISRERLMANELWADVLDNAKFEAEHTDKKLEIAVPPGPWPIFGNRTALDSALENIIRNAFRYSDKHIVVTFSCDNQGIVIHVDDDGPGVAEEDREQIFRPFYRTDEARDRNSGGSGLGLAIVESAISQHGGWAKAEKSPLGGLRLTIWLPLYLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134531_4	4.10\|3682821\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	3682821-3682852	32	NC_031059	Rhodovulum phage vB_RhkS_P1, complete genome	5963-5994	7	0.781
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NZ_CP031397	Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence	39566-39597	8	0.75
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NZ_CP019854	Borreliella burgdorferi plasmid lp54, complete sequence	39468-39499	8	0.75
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NZ_CP019765	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence	39468-39499	8	0.75
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NC_011784	Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence	39440-39471	8	0.75
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NZ_CP017218	Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence	14296-14327	8	0.75
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NC_013130	Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence	39478-39509	8	0.75
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NC_013128	Borrelia burgdorferi 297 plasmid 297_lp54, complete sequence	37228-37259	8	0.75
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NC_013129	Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence	39419-39450	8	0.75
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NC_001857	Borreliella burgdorferi B31 plasmid lp54, complete sequence	39468-39499	8	0.75
LR134531_4	4.4\|3682461\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	3682461-3682492	32	CP046512	Bacillus cereus strain JHU plasmid p1, complete sequence	493358-493389	8	0.75
LR134531_4	4.9\|3682761\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	3682761-3682792	32	NZ_CP048619	Legionella pneumophila strain ERS1305867 plasmid unnamed, complete sequence	58838-58869	8	0.75
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NZ_CP020746	Bacillus mycoides strain Gnyt1 plasmid unnamed3, complete sequence	49366-49397	9	0.719
LR134531_4	4.8\|3682701\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	3682701-3682732	32	NZ_CP017672	Providencia rettgeri strain RB151 plasmid pRB151-NDM, complete sequence	70934-70965	9	0.719
LR134531_1	1.3\|1540013\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540013-1540044	32	NZ_CP028957	Morganella morganii strain AR_0133 plasmid unnamed1, complete sequence	5233-5264	10	0.688
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NZ_CP016932	Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence	68575-68606	10	0.688
LR134531_1	1.4\|1540073\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	1540073-1540104	32	NZ_CP025801	Yersinia ruckeri strain SC09 plasmid pWKY, complete sequence	2234-2265	10	0.688
LR134531_4	4.1\|3682281\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	3682281-3682312	32	NC_048080	Acinetobacter phage vB_AbaM_B09_Aci05, complete genome	58769-58800	10	0.688
LR134531_4	4.1\|3682281\|32\|LR134531\|PILER-CR,CRISPRCasFinder,CRT	3682281-3682312	32	NC_048074	Acinetobacter phage vB_AbaM_B09_Aci01-1, complete genome	58347-58378	10	0.688

1. spacer 4.10|3682821|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NC_031059 (Rhodovulum phage vB_RhkS_P1, complete genome) position: , mismatch: 7, identity: 0.781

aagccaaacctatcgagcgggcgttctcgcat	CRISPR spacer
aggccaagcccatcgagcgggcgttccgcgat	Protospacer
*.*****.**.***************.   **

2. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031397 (Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence) position: , mismatch: 8, identity: 0.75

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
ttttatttttaaatataaaaatcccctttaag	Protospacer
*.*** ****.**************. ..**

3. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019854 (Borreliella burgdorferi plasmid lp54, complete sequence) position: , mismatch: 8, identity: 0.75

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
ttttatttttaaatataaaaatcccctttaag	Protospacer
*.*** ****.**************. ..**

4. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019765 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence) position: , mismatch: 8, identity: 0.75

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
ttttatttttaaatataaaaatcccctttaag	Protospacer
*.*** ****.**************. ..**

5. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NC_011784 (Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence) position: , mismatch: 8, identity: 0.75

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
ttttatttttaaatataaaaatcccctttaag	Protospacer
*.*** ****.**************. ..**

6. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017218 (Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence) position: , mismatch: 8, identity: 0.75

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
ttttatttttaaatataaaaatcccctttaag	Protospacer
*.*** ****.**************. ..**

7. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NC_013130 (Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence) position: , mismatch: 8, identity: 0.75

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
ttttatttttaaatataaaaatcccctttaag	Protospacer
*.*** ****.**************. ..**

8. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NC_013128 (Borrelia burgdorferi 297 plasmid 297_lp54, complete sequence) position: , mismatch: 8, identity: 0.75

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
ttttatttttaaatataaaaatcccctttaag	Protospacer
*.*** ****.**************. ..**

9. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NC_013129 (Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence) position: , mismatch: 8, identity: 0.75

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
ttttatttttaaatataaaaatcccctttaag	Protospacer
*.*** ****.**************. ..**

10. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NC_001857 (Borreliella burgdorferi B31 plasmid lp54, complete sequence) position: , mismatch: 8, identity: 0.75

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
ttttatttttaaatataaaaatcccctttaag	Protospacer
*.*** ****.**************. ..**

11. spacer 4.4|3682461|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to CP046512 (Bacillus cereus strain JHU plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

gccagct--ttaaacattgacaatatccgcttgc	CRISPR spacer
--tagttaacaaaacattaacaatatgcgcttgc	Protospacer
  .**.*  . *******.******* *******

12. spacer 4.9|3682761|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048619 (Legionella pneumophila strain ERS1305867 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

aaacgtgcgggaaaaatacggctcaacgctat	CRISPR spacer
gaatctaaggaaaaaatacgactcaacgctac	Protospacer
.**. *. **.*********.**********.

13. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020746 (Bacillus mycoides strain Gnyt1 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
tgttaattttgaatattaaaaccccaattgac	Protospacer
* ************** ****.*** ....*.

14. spacer 4.8|3682701|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017672 (Providencia rettgeri strain RB151 plasmid pRB151-NDM, complete sequence) position: , mismatch: 9, identity: 0.719

ataatgctcagttaataaccgtttcttggaac	CRISPR spacer
caattgctgagttaatcaccgtttcttttgag	Protospacer
  * **** ******* **********  .*

15. spacer 1.3|1540013|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028957 (Morganella morganii strain AR_0133 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

aagcccagcccgcttaactgcgttcctccatc	CRISPR spacer
tcttaccttccgctttactgcgtttctccatc	Protospacer
   . *  .****** ********.*******

16. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016932 (Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
tcgtaattttcaatataaaaatcagtaatgcc	Protospacer
** ******* ************  *. .. .

17. spacer 1.4|1540073|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025801 (Yersinia ruckeri strain SC09 plasmid pWKY, complete sequence) position: , mismatch: 10, identity: 0.688

tcttaattttgaatataaaaatccctgccaat	CRISPR spacer
tcgtaattttcaatataaaaatcagtaatgcc	Protospacer
** ******* ************  *. .. .

18. spacer 4.1|3682281|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NC_048080 (Acinetobacter phage vB_AbaM_B09_Aci05, complete genome) position: , mismatch: 10, identity: 0.688

tggccagtgattatgttcaacataaacagcac	CRISPR spacer
cttcttaccattatgtgcaacataaacatcac	Protospacer
.  *. .. ******* *********** ***

19. spacer 4.1|3682281|32|LR134531|PILER-CR,CRISPRCasFinder,CRT matches to NC_048074 (Acinetobacter phage vB_AbaM_B09_Aci01-1, complete genome) position: , mismatch: 10, identity: 0.688

tggccagtgattatgttcaacataaacagcac	CRISPR spacer
cttcttaccattatgtgcaacataaacatcac	Protospacer
.  *. .. ******* *********** ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1065846 : 1082230

Erwinia_phage(31.25%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ54275.1\|1065846_1066164_+	Uncharacterised protein	F1C5D1	Cronobacter_phage	7.1e-19	45.7
VEJ54276.1\|1066153_1066579_+	Phage-related lysozyme (muraminidase)	A0A0M4R365	Salmonella_phage	3.1e-33	57.0
VEJ54277.1\|1066575_1066977_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54278.1\|1067515_1068013_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54279.1\|1068017_1069100_+	Protein of uncharacterised function (DUF3383)	E5AGB4	Erwinia_phage	4.2e-95	44.8
VEJ54281.1\|1069117_1069555_+	Protein of uncharacterised function (DUF3277)	E5AGB5	Erwinia_phage	7.2e-38	51.4
VEJ54282.1\|1069668_1070085_+	Uncharacterised protein	I3PGV1	Xanthomonas_phage	3.7e-15	37.0
VEJ54283.1\|1070150_1070282_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54285.1\|1070278_1072063_+	Phage-related protein	NA	NA	NA	NA
VEJ54286.1\|1072062_1072731_+	Uncharacterised protein	E5AGB8	Erwinia_phage	4.2e-21	33.0
VEJ54287.1\|1072772_1073093_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54288.1\|1073139_1074105_+	Uncharacterised protein	E5AGC0	Erwinia_phage	3.7e-58	40.9
VEJ54289.1\|1074091_1074757_+	Mu-like prophage protein gp45	I3PGV6	Xanthomonas_phage	1.4e-37	43.4
VEJ54291.1\|1074753_1075107_+	Uncharacterised protein	I3PGV7	Xanthomonas_phage	1.7e-29	55.8
VEJ54292.1\|1075106_1076528_+	Uncharacterized homolog of phage Mu protein gp47	E5AGC3	Erwinia_phage	1.5e-68	36.2
VEJ54293.1\|1076524_1077268_+	Protein of uncharacterised function (DUF2612)	A0A142IEZ9	Pseudomonas_phage	3.6e-05	27.2
VEJ54294.1\|1077264_1077933_+	Phage Tail Collar Domain	K7P7Q7	Enterobacteria_phage	2.7e-44	59.6
VEJ54296.1\|1077932_1078523_+\|tail	Bacteriophage tail assembly protein	E5G6P1	Salmonella_phage	7.8e-27	37.8
VEJ54297.1\|1078649_1079408_+\|tail	Phage tail fibre repeat	NA	NA	NA	NA
VEJ54298.1\|1079416_1079842_+\|tail	Caudovirales tail fibre assembly protein	A0A0F7LDZ0	Escherichia_phage	7.8e-21	35.7
VEJ54299.1\|1079924_1080032_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54301.1\|1080602_1081166_+	DNA-invertase hin	A0A0A7NPV4	Enterobacteria_phage	6.9e-65	70.2
VEJ54302.1\|1081333_1082230_+\|tail	Phage tail fibre repeat	A0A2K9VKP4	Shigella_phage	2.0e-26	41.4

DBSCAN-SWA_2

1326529 : 1345327

Salmonella_phage(19.05%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ54573.1\|1326529_1327921_+\|tRNA	Cysteine--tRNA ligase	F1C984	Moumouvirus	3.6e-46	34.7
VEJ54574.1\|1327991_1328852_-	Bifunctional protein FolD	A0A249XZQ2	Enterococcus_phage	1.9e-29	33.7
VEJ54575.1\|1329303_1330461_-	site-specific tyrosine recombinase XerC	A0A0M4R586	Salmonella_phage	8.9e-176	77.7
VEJ54576.1\|1330846_1331056_-	Uncharacterised protein	NA	NA	NA	NA
VEJ54578.1\|1331052_1331592_-	phage N-6-adenine-methyltransferase	A0A1W6JP96	Morganella_phage	3.3e-40	48.3
VEJ54579.1\|1331588_1331828_-	Uncharacterised protein	NA	NA	NA	NA
VEJ54580.1\|1331842_1332139_-	Uncharacterised protein	K7ZPX9	Xanthomonas_citri_phage	2.0e-23	55.3
VEJ54581.1\|1332193_1332475_-	Uncharacterised protein	NA	NA	NA	NA
VEJ54582.1\|1332529_1332757_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	3.4e-15	59.1
VEJ54584.1\|1333036_1334179_-	Uncharacterised protein	A0A059VA49	Pseudomonas_phage	3.5e-84	48.5
VEJ54585.1\|1334162_1334489_-	Protein of uncharacterised function (DUF1317)	A0A0N7CHV0	Escherichia_phage	2.7e-05	45.8
VEJ54586.1\|1334498_1335086_-	Uncharacterised protein	A0A0M4RD07	Salmonella_phage	2.3e-55	74.8
VEJ54587.1\|1335085_1335907_-	Exodeoxyribonuclease 8	A0A0M5M5Y6	Salmonella_phage	6.2e-107	68.9
VEJ54588.1\|1335906_1336203_-	Uncharacterised protein	NA	NA	NA	NA
VEJ54590.1\|1336453_1336726_-	Uncharacterised protein	D9ICH9	Escherichia_virus	4.4e-17	52.3
VEJ54591.1\|1336917_1337130_-	Uncharacterised protein	NA	NA	NA	NA
VEJ54593.1\|1337546_1338179_-	Uncharacterized HTH-type transcriptional regulator CBU_1416	K7PM82	Enterobacteria_phage	2.4e-50	64.2
VEJ54594.1\|1338271_1338499_+	Uncharacterized protein conserved in bacteria, prophage-related	NA	NA	NA	NA
VEJ54595.1\|1338558_1339014_+	Uncharacterised protein	K7PJS5	Enterobacterial_phage	7.6e-30	44.8
VEJ54596.1\|1339015_1339282_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54597.1\|1339302_1339455_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54599.1\|1339447_1340305_+	phage replication protein O, N-terminal domain	K7PL20	Enterobacteria_phage	9.1e-93	60.5
VEJ54600.1\|1340416_1342303_+	DNA primase (bacterial type)	Q5G8S8	Enterobacteria_phage	1.2e-275	71.9
VEJ54602.1\|1342302_1342746_+	Uncharacterised protein	I6PD71	Cronobacter_phage	2.4e-44	55.5
VEJ54603.1\|1342746_1343001_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54604.1\|1342993_1343287_+	82 prophage-derived uncharacterized protein ybcO	E5AGG0	Erwinia_phage	4.2e-42	81.2
VEJ54605.1\|1343283_1343640_+	Crossover junction endodeoxyribonuclease rusA	A0A2H4J472	uncultured_Caudovirales_phage	2.9e-37	68.6
VEJ54607.1\|1343639_1343843_+	Phage NinH protein	NA	NA	NA	NA
VEJ54608.1\|1343839_1344343_+	Phage antitermination protein Q	H6WZJ5	Escherichia_phage	3.4e-55	65.4
VEJ54609.1\|1344624_1344942_+	Uncharacterised protein	F1C5D1	Cronobacter_phage	3.1e-22	53.9
VEJ54610.1\|1344934_1345327_+	Uncharacterised protein	E7C9S9	Salmonella_phage	4.2e-37	62.3

DBSCAN-SWA_3

1349048 : 1369172

Cronobacter_phage(28.57%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ54617.1\|1349048_1349615_+	Terminase small subunit	G0ZND3	Cronobacter_phage	6.5e-55	62.7
VEJ54619.1\|1349611_1351174_+	Terminase-like family	G8C7P3	Escherichia_phage	5.2e-272	84.0
VEJ54620.1\|1351173_1352562_+	Uncharacterised protein	A0A1B0VMH0	Pseudomonas_phage	6.1e-139	53.7
VEJ54621.1\|1352563_1353676_+	Uncharacterised protein	I6PD76	Cronobacter_phage	1.9e-119	57.1
VEJ54622.1\|1353672_1353828_+	GnsA/GnsB family	NA	NA	NA	NA
VEJ54624.1\|1353939_1354716_+	Uncharacterised protein	A0A1B0VMG1	Pseudomonas_phage	7.0e-68	60.4
VEJ54625.1\|1354729_1355938_+	Bacterial Ig-like domain (group 2)	A0A1B0VMF8	Pseudomonas_phage	3.6e-143	79.1
VEJ54626.1\|1355983_1356466_+	Uncharacterised protein	G8C7P9	Escherichia_phage	5.9e-25	44.1
VEJ54627.1\|1356465_1356816_+	Uncharacterised protein	I6PD77	Cronobacter_phage	3.2e-28	53.0
VEJ54629.1\|1356817_1357411_+	Uncharacterised protein	G8C7Q1	Escherichia_phage	1.7e-50	51.8
VEJ54630.1\|1357407_1357815_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54631.1\|1357882_1358542_+\|tail	Phage tail protein	I6PBN6	Cronobacter_phage	5.2e-56	51.2
VEJ54632.1\|1358625_1358937_+	Domain of uncharacterised function (DUF1789)	I6PDG2	Cronobacter_phage	5.5e-32	63.1
VEJ54633.1\|1359101_1359242_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54635.1\|1359244_1362211_+\|tail	Phage-related minor tail protein	E4WL33	Enterobacteria_phage	4.2e-145	39.1
VEJ54636.1\|1362279_1362627_+	Phage-related protein	A0A0S2SYI2	Pseudomonas_phage	9.9e-22	45.8
VEJ54637.1\|1362623_1363382_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	1.0e-116	78.0
VEJ54638.1\|1363384_1364092_+	NlpC/P60 family	K7PGR2	Enterobacteria_phage	5.5e-104	72.3
VEJ54639.1\|1364272_1364803_+	Uncharacterized phage-encoded protein	Q38450	Enterobacteria_phage	2.5e-61	64.7
VEJ54641.1\|1364860_1365205_-	Arc-like DNA binding domain	NA	NA	NA	NA
VEJ54642.1\|1365333_1365507_+	Uncharacterised protein	G9L6D7	Escherichia_phage	3.0e-11	62.3
VEJ54643.1\|1365490_1366360_+	P22_AR N-terminal domain	A5VW58	Enterobacteria_phage	1.2e-44	68.0
VEJ54644.1\|1366356_1366539_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54645.1\|1366669_1366948_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54647.1\|1367069_1367639_+	Uncharacterised protein	I6PDJ9	Cronobacter_phage	1.2e-16	53.4
VEJ54648.1\|1367668_1368079_+	Uncharacterised protein	K7PLY8	Enterobacterial_phage	5.8e-37	56.6
VEJ54649.1\|1368123_1368522_+	Uncharacterised protein	NA	NA	NA	NA
VEJ54650.1\|1368581_1369172_+\|tail	Phage-related protein, tail component	K7PHE5	Enterobacteria_phage	5.3e-84	79.1

DBSCAN-SWA_4

2413794 : 2423607

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ55807.1\|2413794_2415138_-	UDP-glucose 6-dehydrogenase tuaD	A0A127AXI2	Bacillus_phage	1.8e-79	37.6
VEJ55808.1\|2415164_2416019_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	5.2e-56	45.5
VEJ55809.1\|2416316_2417327_-	response regulator of RpoS	Q56AR1	Bacillus_thuringiensis_phage	9.9e-06	32.5
VEJ55810.1\|2417530_2417989_+	SWIM/SEC-C metal-binding motif protein, PBPRA1643 family	NA	NA	NA	NA
VEJ55811.1\|2418105_2418939_+	Formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	5.0e-11	41.5
VEJ55812.1\|2419715_2420288_+	LOG family protein yvdD	A0A1V0S9E9	Catovirus	5.4e-09	24.6
VEJ55813.1\|2420401_2421208_+	Exodeoxyribonuclease III	NA	NA	NA	NA
VEJ55814.1\|2421267_2421669_+	CTP pyrophosphohydrolase	NA	NA	NA	NA
VEJ55815.1\|2421675_2423607_-	DNA topoisomerase 3	A0A1X9I6W8	Streptococcus_phage	4.8e-41	31.2

DBSCAN-SWA_5

2764750 : 2786211

Haemophilus_phage(57.89%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ56098.1\|2764750_2766217_-	Uncharacterised protein	Q7Y5S2	Haemophilus_phage	3.4e-23	45.4
VEJ56099.1\|2766354_2767827_-	Uncharacterised protein	Q7Y5S2	Haemophilus_phage	4.3e-26	55.6
VEJ56100.1\|2767917_2768271_-	Uncharacterised protein	NA	NA	NA	NA
VEJ56101.1\|2768270_2770037_-	Uncharacterised protein	Q7Y5S2	Haemophilus_phage	2.2e-24	45.4
VEJ56102.1\|2770252_2771887_-	Uncharacterised protein	Q7Y5S2	Haemophilus_phage	2.0e-24	45.4
VEJ56103.1\|2771972_2772563_-\|tail	Bacteriophage tail assembly protein	Q9MCR5	Enterobacteria_phage	9.8e-30	35.2
VEJ56104.1\|2772562_2773819_-	Phage Tail Collar Domain	K7P7Q7	Enterobacteria_phage	3.7e-34	50.6
VEJ56105.1\|2773815_2774469_-	Protein of uncharacterised function (DUF2612)	D0UIH4	Aggregatibacter_phage	9.8e-47	50.5
VEJ56106.1\|2774465_2775611_-	Uncharacterized homolog of phage Mu protein gp47	D0UIH5	Aggregatibacter_phage	7.3e-106	52.6
VEJ56107.1\|2775644_2775992_-	Uncharacterised protein	Q7Y5S5	Haemophilus_phage	9.2e-28	54.1
VEJ56108.1\|2775981_2776692_-\|plate	phage baseplate assembly protein V	D0UIH7	Aggregatibacter_phage	1.3e-36	39.6
VEJ56109.1\|2776684_2777506_-	Uncharacterised protein	Q7Y5S8	Haemophilus_phage	6.9e-74	48.7
VEJ56110.1\|2777492_2777819_-	Uncharacterised protein	D0UII0	Aggregatibacter_phage	1.6e-18	44.6
VEJ56111.1\|2777838_2778612_-	Uncharacterised protein	Q7Y5T0	Haemophilus_phage	2.0e-30	39.4
VEJ56112.1\|2778615_2780469_-	Phage-related protein	Q7Y5T2	Haemophilus_phage	7.7e-12	27.2
VEJ56113.1\|2780629_2781019_-	Protein of uncharacterised function (DUF2669)	Q776V6	Haemophilus_phage	1.8e-24	42.4
VEJ56114.1\|2781018_2781450_-	Uncharacterised protein	Q7Y5T4	Haemophilus_phage	4.1e-41	60.3
VEJ56115.1\|2781517_2783023_-	Protein of uncharacterised function (DUF3383)	Q7Y5T5	Haemophilus_phage	4.4e-135	49.6
VEJ56116.1\|2783036_2783558_-	Uncharacterised protein	NA	NA	NA	NA
VEJ56117.1\|2783915_2784269_-	Phage antitermination protein Q	NA	NA	NA	NA
VEJ56118.1\|2784417_2785116_+	Peptidase S24-like	M9NZE3	Enterobacteria_phage	4.9e-36	39.1
VEJ56119.1\|2785446_2786211_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.4e-39	39.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134531

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection