CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134532	Pasteurella multocida strain NCTC10323 genome assembly, chromosome: 1	3 crisprs	cas1,cas2,DEDDh,cas3,DinG,cas3-cas2,cas6f,cas7f,cas5f,cas8f,csa3	3	17	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134532_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134532_1

30623-31516

TypeII

Consensus_repeat	Method
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	PILER-CR
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CRISPRCasFinder
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CRT

13 spacers

cas2,cas1,cas9

The CRISPR arrays of LR134532_1

>merge|LR134532|1|30623-31516|PILER-CR,CRISPRCasFinder,CRT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACACATTGGGTATCACTACGTAATCCGTCGAGATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACTTGTTTATCTGTTTAATACACGTCTAGTTAATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACTTCAATTGTGGATTATTCCATAAAAGCCACATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACTGATAGTCATTATAAAAGGAATCACCGTGTATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACAAGAAATTTTACCACAAACTCATCTGTACTATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACCTCTGAGGTCATCGAAGTGCCTACCTTCCTATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACGCTGAGGTGGTATAAAGTACTACAGCCATTATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACCTCGATATGTACCAGCAGGAGACCGTACCTATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACCCGTTTTGGTCCCTGTAATTGGCAACTTGAATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACCTCTTGGTCATCTATAAGTTAACTCTTGGTATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACAGTCAAAGCGTTATTTGCGAAGAAAGCAAAATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACTAAACTCAATGAATTTAACTTTTATCTACCATTGTAGCACTGCGAAATGAGAGAGGGAACTACAACTCCAGCCTTATCAAATTGATTAGCATGTATATTGTAGCACTGCGAAATGAGAGCCACAAAAATAAC

>LR134532|1|1|30623-31450|PILER-CR
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	ACATTGGGTATCACTACGTAATCCGTCGAG
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TTGTTTATCTGTTTAATACACGTCTAGTTA
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TTCAATTGTGGATTATTCCATAAAAGCCAC
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TGATAGTCATTATAAAAGGAATCACCGTGT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	AAGAAATTTTACCACAAACTCATCTGTACT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CTCTGAGGTCATCGAAGTGCCTACCTTCCT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	GCTGAGGTGGTATAAAGTACTACAGCCATT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CTCGATATGTACCAGCAGGAGACCGTACCT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CCGTTTTGGTCCCTGTAATTGGCAACTTGA
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CTCTTGGTCATCTATAAGTTAACTCTTGGT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	AGTCAAAGCGTTATTTGCGAAGAAAGCAAA
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TAAACTCAATGAATTTAACTTTTATCTACC
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC

>LR134532|1|1|30623-31516|CRISPRCasFinder
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	ACATTGGGTATCACTACGTAATCCGTCGAG
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TTGTTTATCTGTTTAATACACGTCTAGTTA
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TTCAATTGTGGATTATTCCATAAAAGCCAC
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TGATAGTCATTATAAAAGGAATCACCGTGT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	AAGAAATTTTACCACAAACTCATCTGTACT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CTCTGAGGTCATCGAAGTGCCTACCTTCCT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	GCTGAGGTGGTATAAAGTACTACAGCCATT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CTCGATATGTACCAGCAGGAGACCGTACCT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CCGTTTTGGTCCCTGTAATTGGCAACTTGA
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CTCTTGGTCATCTATAAGTTAACTCTTGGT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	AGTCAAAGCGTTATTTGCGAAGAAAGCAAA
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TAAACTCAATGAATTTAACTTTTATCTACC
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TCCAGCCTTATCAAATTGATTAGCATGTAT
ATTGTAGCACTGCGAAATGAGAGCCACAAAAATAAC

>LR134532|1|1|30623-31516|CRT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	ACATTGGGTATCACTACGTAATCCGTCGAG
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TTGTTTATCTGTTTAATACACGTCTAGTTA
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TTCAATTGTGGATTATTCCATAAAAGCCAC
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TGATAGTCATTATAAAAGGAATCACCGTGT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	AAGAAATTTTACCACAAACTCATCTGTACT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CTCTGAGGTCATCGAAGTGCCTACCTTCCT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	GCTGAGGTGGTATAAAGTACTACAGCCATT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CTCGATATGTACCAGCAGGAGACCGTACCT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CCGTTTTGGTCCCTGTAATTGGCAACTTGA
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	CTCTTGGTCATCTATAAGTTAACTCTTGGT
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	AGTCAAAGCGTTATTTGCGAAGAAAGCAAA
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TAAACTCAATGAATTTAACTTTTATCTACC
ATTGTAGCACTGCGAAATGAGAGAGGGAACTACAAC	TCCAGCCTTATCAAATTGATTAGCATGTAT
ATTGTAGCACTGCGAAATGAGAGCCACAAAAATAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134532.1\|VEJ48057.1\|39507_41652_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
LR134532.1\|VEJ48053.1\|33725_34733_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
LR134532.1\|VEJ48059.1\|42739_44572_+\|cold-shock-DEAD-box-protein-A	unknown	unknown	gnl\|CDD\|236941
LR134532.1\|VEJ48044.1\|23558_24623_-\|permease-PerM	unknown	unknown	gnl\|CDD\|223701
LR134532.1\|VEJ48041.1\|18710_19922_+\|putative-RND-efflux-membrane-fusion-protein	unknown	unknown	gnl\|CDD\|273776
LR134532.1\|VEJ48048.1\|25929_29100_+\|Uncharacterized-protein-conserved-in-bacteria	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LR134532.1\|VEJ48056.1\|37616_39059_+\|glutamyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234953
LR134532.1\|VEJ48047.1\|25411_25705_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|375144
LR134532.1\|VEJ48051.1\|31562_32936_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
LR134532.1\|VEJ48054.1\|34768_35989_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
LR134532.1\|VEJ48052.1\|32951_33725_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239782
LR134532.1\|VEJ48055.1\|36074_36863_-\|glycosyltransferase,-DXD-sugar-binding-motif-protein	unknown	unknown	gnl\|CDD\|226297
LR134532.1\|VEJ48049.1\|29155_30070_+\|CRISPR-associated-endonuclease-Cas1,-subtype-II/NMENI	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LR134532.1\|VEJ48058.1\|41846_42632_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|227124
LR134532.1\|VEJ48045.1\|24702_25053_+\|arsenate-reductase	unknown	unknown	gnl\|CDD\|272855
LR134532.1\|VEJ48060.1\|44671_45520_-\|pyrophosphorylase-ModD	unknown	unknown	gnl\|CDD\|180397
LR134532.1\|VEJ48046.1\|25125_25407_+\|Alternative-ribosome-rescue-factor-A	unknown	unknown	gnl\|CDD\|225578
LR134532.1\|VEJ48043.1\|20402_23501_+\|acriflavin-resistance-protein	unknown	unknown	gnl\|CDD\|223911
LR134532.1\|VEJ48042.1\|19949_20393_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|224867
LR134532.1\|VEJ48050.1\|30062_30389_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043

Protein	Function_ID	Function_description	E-value
LR134532.1\|VEJ48057.1\|39507_41652_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
LR134532.1\|VEJ48053.1\|33725_34733_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	2.19032e-176
LR134532.1\|VEJ48059.1\|42739_44572_+\|cold-shock-DEAD-box-protein-A	gnl\|CDD\|236941	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.	0
LR134532.1\|VEJ48044.1\|23558_24623_-\|permease-PerM	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	2.42367e-56
LR134532.1\|VEJ48041.1\|18710_19922_+\|putative-RND-efflux-membrane-fusion-protein	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	9.71127e-64
LR134532.1\|VEJ48048.1\|25929_29100_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LR134532.1\|VEJ48056.1\|37616_39059_+\|glutamyl-tRNA-synthetase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
LR134532.1\|VEJ48047.1\|25411_25705_+\|Uncharacterised-protein	gnl\|CDD\|375144	pfam17347, DUF5377, Family of unknown function (DUF5377). This is a family of unknown function found in Pasteurellaceae.	5.24439e-64
LR134532.1\|VEJ48051.1\|31562_32936_-\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
LR134532.1\|VEJ48054.1\|34768_35989_+\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
LR134532.1\|VEJ48052.1\|32951_33725_-\|acetylglutamate-kinase	gnl\|CDD\|239782	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).	2.26873e-133
LR134532.1\|VEJ48055.1\|36074_36863_-\|glycosyltransferase,-DXD-sugar-binding-motif-protein	gnl\|CDD\|226297	COG3774, OCH1, Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane].	6.4748e-84
LR134532.1\|VEJ48049.1\|29155_30070_+\|CRISPR-associated-endonuclease-Cas1,-subtype-II/NMENI	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.63965e-145
LR134532.1\|VEJ48058.1\|41846_42632_+\|lipoprotein-NlpI	gnl\|CDD\|227124	COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only].	4.65452e-141
LR134532.1\|VEJ48045.1\|24702_25053_+\|arsenate-reductase	gnl\|CDD\|272855	TIGR00014, Putative_arsenate_reductase., arsenate reductase (glutaredoxin). This model describes a distinct clade, including ArsC itself, of the broader ArsC family described by Pfam pfam03960. This clade is almost completely restricted to the Proteobacteria. An anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. When expressed in Escherichia coli this ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. The pump is composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate. [Cellular processes, Detoxification].	1.56527e-62
LR134532.1\|VEJ48060.1\|44671_45520_-\|pyrophosphorylase-ModD	gnl\|CDD\|180397	PRK06096, PRK06096, molybdenum transport protein ModD; Provisional.	0
LR134532.1\|VEJ48046.1\|25125_25407_+\|Alternative-ribosome-rescue-factor-A	gnl\|CDD\|225578	COG3036, COG3036, Uncharacterized protein conserved in bacteria [Function unknown].	1.95702e-25
LR134532.1\|VEJ48043.1\|20402_23501_+\|acriflavin-resistance-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
LR134532.1\|VEJ48042.1\|19949_20393_+\|GAF-domain-containing-protein	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	5.01837e-82
LR134532.1\|VEJ48050.1\|30062_30389_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.88257e-59

>LR134532.1|VEJ48050.1|30062_30389_+|CRISPR-associated-endoribonuclease-Cas2
MSEGKFMRLIVFFDLPVTTKAKRKAANQFRQFLLKDGYQMLQLSVYARIIRGRDSMQKHNKRLSDHLPEEGSIRCLEVTEKQFAGMKILLGRLRLQEKKVNANQMLLF
>LR134532.1|VEJ48049.1|29155_30070_+|CRISPR-associated-endonuclease-Cas1,-subtype-II/NMENI
MSWRSILISQGGKLSLQRKQMLIQQSNNSFTVPLEDIAVIVIESKETLITAPLLSALAQYGVTLLTCDEQFLPCGQWLPFGQYYRQLKTLKLQLETTLPQKKQLWQKIVQQKIRNQGFVLEQVGYFNETKRLNRMANQVKSGDKENVEAQAALIYFQTLFGKTFKRSEENNINAHLNYAYTVLRSAIARALVLYGWLPQLGIFHRSEVNPFNLADDFVEPFRPLVDLMVWQLWHTNQLTSGLSPNTKQKLISLLHHQMSFQEETFSVLAAIDRTVGSFQAALTTPNANLLKLPEILPLKEHQYE
>LR134532.1|VEJ48048.1|25929_29100_+|Uncharacterized-protein-conserved-in-bacteria
MQTTNLSYILGLDLGIASVGWAVVEINENEDPIGLIDVGVRIFERAEVPKTGESLALSRRLARSTRRLIRRRARRLLLAKRFLKREGILSTTDLEKGLPNQAWELRVAGLERRLSAIEWGAVLLHLIKHRGYLSKRKNESQTNNKELGALLSGVAQNHQLLQSDDYRTPAELALKKFAKEEGHIRNQRGAYTHTFNRLDLLAELNLLFAQQHQFGNPHCKEHIQQYMTELLMWQKPALSGEAILKMLGKCTHEKNEFKAAKHTYSAERFVWLTKLNNLRILEDGAERALNEEERQLLINHPYEKSKLTYAQVRKLLGLSEQAIFKHLRYSKENAESATFMELKAWHAIRKALENQGLKDTWQDLAKKPDLLDEIGTAFSLYKTDEDIQQYLTNKVPNSVINALLVFLNFDKFIELALKSLRKILPLMEQGKRYDQACREIYGHHYGEANQKTSQLLPAIPAQEIRNPVVLRTLSQARKVINAIIRQYGSPARVHIETGRELGKSFKERREIQKQQEDNRTKRESAVQKFKELFSDFSSEPKSKDILKFRLYEQQHGKCLYSGKEINIHRLNEKGYVEIDHALPFSRTWDDSFNNKVLVLASENQNKGNQTPYEWLQGKINSERWKNFVALVLGSQCSAAKKQRLLTQVIDDNKFIDRNLNDTRYIARFLSNYIQENLLLVGKNKKNVFTPNGQITALLRSRWGLIKIRENNDRHHALDAIVVACATPSMQQKITRFIRFKEVHPYKIENRYEMVDQESGEIISPHFPEPWAYFRQEVNIRVFDNHPDTVLKEMLPDRPQANHQFVQPLFVSRAPTRKMSGQGHMETIKSAKRLAEGISVLRIPLTQLKPNLLENMVNKEREPALYAGLKARLAEFNQDPAKAFTTPFYKQGGQQVKAIRVEQVQKSGVLVRENNGVADNASIVRTDVFIKNNKFFLVPIYTWQVAKGILPNKAIVAHKNEDEWEEMDEGAKFKFSLFPNDLVELKTKKEYFFGYYIGLDRATGNISLKEHDGEISKGKDGVYRVGVKLALSFEKYQVDELGKNRQICRPQQRQPVR
>LR134532.1|VEJ48047.1|25411_25705_+|Uncharacterised-protein
MTVQTEVLFSNNWNVRISDPGEEGAHSHFFETIYITLVAHIDGSNISYEFTRKVEEQVKIHRTFTDLSELFKFLGDYLDPVSMGFLGIKIGNLGVKA
>LR134532.1|VEJ48046.1|25125_25407_+|Alternative-ribosome-rescue-factor-A
MAKKQKQPLSAQPYQHSRGVIRDNAICALLHDPLFRQRIEKKRKGKGSYQRKAKHVGKYFEKPDYKIFDLKDFIIGFFLTIFYNNATHLNSAR
>LR134532.1|VEJ48045.1|24702_25053_+|arsenate-reductase
MCVTIYHNPRCSKSRETLALLEAKYGQPKIELYLEQQFSASQLQQIAQKLGVTSFREMMRTKDELYRDLGLDKPEVSEQQLLEALVAHSSLLERPIVIHGDKAKIGRPPESVLEIL
>LR134532.1|VEJ48044.1|23558_24623_-|permease-PerM
MIEMLKNWYNNRFSDPQAMGLFAILLFGFISIYFFSHLIAPLLIAIVLAYLLEWPIRVLTEKLKFPRLLSTAIIFGGFLGLILVIVLVFIPTLWTQTLNLVTDLPHMFNKLNEWLLSLPEHYPELVDYQTIDSVLSTVRSKILGFGESALKFSLTSLLSLVTLGIYAFLVPLMVFFLLKDKTELIASVSRFLPRNRTLASSVWKEMQQQIANYIRGKLFEIIIVTAVTYAIFVFFNLNYSLLLAVAVGLSVLVPYIGAVLVTIPIALVAVAQFGITPTFWYIITAYVISQILDGNLLVPFLFSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWPSTEQDTR
>LR134532.1|VEJ48043.1|20402_23501_+|acriflavin-resistance-protein
MRFTDIFIRRPVLAVSISLLIIILGLQAIAKLAVREYPKMTTTVINVSTVYPGADASLIQAFITSKLEEAVAQADNIDYLSSKSSPNNSLITIKMKLNTEPNGALADVLAKVNSVRSQLPRGIDDPVITSSTGGTGMMYIQFSSTKLDASQVTDYIERVIKPQFFTVEGVAEVQIFGASDYALRIWLDPAKMAAQNLSAMAVRNALSSNNVQTAAGNDNGFYVTYKNKVETTTKSVEELGNLIISSQGDKLVRLRDIAEVELNKSSDSSRAVANGFESVVLAINPTSSANPLVVAENVRPLYEQIKQNLPDSMQVEILYDTTIAINSSIDEVIKTILEATIIVLVVITLFIGSLRAILIPVITIPISLIGVIMLLQAFDFSINLMTLLALILAIGLVVDDAIVVLENVDRHIKLGETPFRAAIIGTREIAVPVISMTIALMAVYSPMALMDGITGSLFKEFALTLAGAVFISGIVALTLSPMMSSKLLKPHTDPSKLEQCIEKMLTTINQGYNYALNLVMASRRCMLAFAAVIFATLPFLFNGLASELTPAEDKGAFMVIGRAPSNVNVDYVQEAMHEYEQILKDTPEVDFSMVISGAMGSNQSFSVVTLKDWKERTRSQAEILAELNKKSAHIPEVALTGFNFPEINTGEQGPPIGFVISTASGYEDLANVAEDFLQEMKKSGHFVYTALDLKFDTAQMRIKVDKEKAGTYGVTMQQISATLGSFLSAATIERVDIDGRAYRIIMQVKRGERLSPESLNNYYVTASNGKSVPLSSFLTMTLESQPTSLPRFSQLNSAVISAVPLPTKSTGEAIAWLKMAAKEYLPQGYNYDFTGEARQLVQEGNALAVTFVLAVVIIFLVLAIQFESIRDPLVIMISVPLAVSGALLMLNFLGFFRIPGTSLNIYSQVGLITLVGLITKHGILMCEVAKEEQLQHGKNRIEAITEAAKVRLRPILMTTAAMIAGLIPLLYASGAGAVSRFSIGIVIVSGLAIGTLFTLFVLPVIYSYIATEHKPLPEFDESIKPLTDNSAH
>LR134532.1|VEJ48042.1|19949_20393_+|GAF-domain-containing-protein
MNYALLLKQLEQILEPETYIISRMANTSAFLYQHMPELNWVGFYLVKDGVLKVGPFQGKVACSDIGFGKGVCGYTWQTGTTTVVDDVHQFAGHIACDSASQSEVVVPIFQGGEMIAELDVDSPRLARFSAEDVAFLENCAALICIKE
>LR134532.1|VEJ48041.1|18710_19922_+|putative-RND-efflux-membrane-fusion-protein
MSVTQANQPKRSHSIAMKIILGVIVLLFAGVIIFNVIKGKMIEKFIAGAGEKIYPVTAMTIQPQQWTPVIETTGIVRPNQGAMLSAQTSGTVQQVLVQSGQHVKKGEVLVVLDSSVELANLKASQAQLLSVKATYQRYLSLYKTKSVSQQELDNAKSAYEALESNIAALKAGIARRQILAPFDGQTGIVKVNVGQYVNPGMEIVRVEDTSSMKIDFALSQTELEHLHVGQKVTATADARSGETFAAKITAIEPAISATTGLIDVQATFEPEDGRKLLSGMFTRLRVALPTKYDQVVVPQVAINYNMYGEIAYILSELSAEERETLVARQDFDREKIDNAYRVKQVTVFTQDRQGIYAQLKGEEIKPGDKIVTGGQQNLSNGSLVLVADKAGVGTMQPAVKNNL
>LR134532.1|VEJ48051.1|31562_32936_-|argininosuccinate-lyase
MALWGGRFTQAADKRFKDFNDSLRFDYRLAEQDIEGSIGWSKALVSVGVLTVQEQQQLESALNTLLIEVRSNPQAILQDDAEDIHSWVESKLIDKVGNLGKKLHTGRSRNDQVALDIKMWCKQRVIELQSSLHALQCKLVETAENNQHAVMPGYTHLQRAQPITFAHWCMAYVEMLDRDYSRLTDAYQRMNSCPLGSGALAGTAYAIDREQLALDLGFDVATRNSLDSVSDRDHIVELLSTASLSMAHLSRFAEDMIIFNSGESNFVELSDRVTSGSSLMPQKKNPDACELIRGKAGRVMGALTGMLMTLKGLPLAYNKDMQEDKEGIFDALDTWQDCIDMAALVLDGIQVNVERTKEAALKGYSNATELADYLVAKGVPFRDSHHIVGETVVYAIQQHKALEALSVAEFKQFSDVVEEDVYQILSLQSCLDKRCAKGGVSPLRVAEAIAEAKARLS
>LR134532.1|VEJ48052.1|32951_33725_-|acetylglutamate-kinase
MKPLVIKLGGALLDTPAAMENLFTALANYQQNFDRPLVIVHGGGCIVDELMQRLHLPVQKKNGLRVTPSDHIEIITGALAGIANKTLVAQAAKFHLNPVGLCLADGNLTYATQLDPELGHVATVVPKNPALLNNLLGEAFLPIISSIAVDKQGLLMNVNADQAATAIAALIQADLIMLSDVDGVLDANKQRLPELNGAQIEQLIKDNVITDGMVVKVNAALDAAKMLNQGVDIANWKYPEKLTALFAGEIIGTRIKP
>LR134532.1|VEJ48053.1|33725_34733_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MQKAIIIGASGYTGAELARILIKHPKFELTGLYVSRQSQDANKCISDIYPQLKCVVDLPLQPLPEQLTQLAQQADLVFLATAHEVSHDLAPVFLQHQCKVFDLSGAFRVNNAAFYRTFYGFEHQHPELLTQAVYGLAEWNAHQIKQTDLVAVAGCYPTVSQLSLKPLIAHNLLDLTQLPVINAVSGVSGAGRKATLTSSFCEVSLNAYGVFNHRHQPEIATHLGTEVIFTPHLGNFKRGILATITAKLKTGVSDEQIRVAYQQAYANKPLVRVYEQGLPSIKAVEFTPYCDIGFATQNGHIIIIGAEDNLLKGAAAQAVQCANIRYGLTETLGLL
>LR134532.1|VEJ48054.1|34768_35989_+|acetylornithine-deacetylase
MTNYAIIMHKYLKGNVFLFIKGKTMKKIPSFLQMYSALIASPTMSSIDPHFDQSNRTLIELLANWLSSLGFKTEVIPLEGSRDKFNLLATYGEGEGGLLLAGHTDTVPFDEGRWQFDPFKLTEKDGKFYGLGTADMKGFFAFVIDAVSQLDLTRLTKPLRILATADEETTMLGARTFIQHSHIRPDCAIIGEPTSLKPIRAHKGHVGEALRITGKSGHSSDPSKGINAIELMHEATGYLMQMRDELRQKYHHSAFNIPYPTMNFGAISGGDAVNRICACCELHFDIRPLPNLRLTDLNEMLQAKLAPMFEKWGDRISLQALHDPIPGYECAHSAQVVQVVEKLLGEQCKTVNYCTEAPFIQQLCPTLVLGPGSIEQAHQPDEFLSAEFIDPTRELLIKLIGQFCTG
>LR134532.1|VEJ48055.1|36074_36863_-|glycosyltransferase,-DXD-sugar-binding-motif-protein
MYKPVKNKHLILITNGMTRLLGNIVKTLSYPFHALLPKMRFTIPEFSPAKRQSHKKTKINRVIWQTNYSNKVTLPVYCNYLFNRLLSLSYDYRYVSTEARADYIKTHADERTFNAYSKLTDGAAQADFWRIFTLYHEGGIYMDIDGHLVWCLDSIIDEEDSEVVISRRGRYTNFFLASAKGNPFLKDTLEIIISNIEQKRIEGGVFCLTGPETLIKALENKEVNSRLDKLTCSQGTFTNEYFQYIDKKRGKWIHAKNEDLLK
>LR134532.1|VEJ48056.1|37616_39059_+|glutamyl-tRNA-synthetase
MKAEALFDLDPGVKVRTRFAPSPTGYLHVGGARTALYSWLYAKHHQGEFVLRIEDTDLERSTPEATAAILEGMAWLNLAWEHGPYFQTKRFDRYNQVIDQMIEQGLAYRCYCSKERLEDLRNTQEQNKQKPRYDRHCLGDHKHSPEQPHVVRFKNPTEGSVVFEDAVRGRIEISNAELDDLIIRRTDGSPTYNFCVVVDDWDMGITHVVRGEDHINNTPRQINILKALGAPIPTYAHVSMILGDDGQKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWGHGDQEIFSVEEMIKLFELESVSKSASAFNTEKLLWLNHHYIRELPAEYVAKHLAWHYQDQGIDTSNGPALEDIVKMLAERCKTLKEMAAASRYFFEDFDSFDEAAVKKHFKAAAIEPLEKIKEKLTALESWDLHSTHQAIEQTAAELELGMGKVGMPLRVAVTGSGQSPSMDVTLVGIGKARTLVRIQKAIDFIKSQNV
>LR134532.1|VEJ48057.1|39507_41652_+|polyribonucleotide-nucleotidyltransferase
MNPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVVAKKDVKEGQDFFPLTVNYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPIRPLFPEGFYNEIQIVATVVSVNPQICPDLVAMIGASAALSLSGVPFNGPIGAARVGFIDDQFVLNPTMNEQKQSRLDLVVAGTDKAVLMVESEADVLTEEQMLAAVVFGHQQQQVVIDAIKEFTAEAGKPRWDWVAPEPNTALIEKVKAIAEARLGEAYRITEKQARYEQIDAIKADVIAQITAEVAEGEDISEGKIVDIFTALESQIVRSRIIAGEPRIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSDHFLFHYNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTFAEFPYVVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDIKIEGITAEIMQIALNQAKSARLHILGVMEQAIPAPRADISDFAPRIYTMKIDPKKIKDVIGKGGATIRALTEETGTSIDIDDDGTVKIAAVDGNSAKEVMARIEDITAEVEAGAVYKGKVTRLADFGAFVSIVGNKEGLVHISQIAEERVEKVSDYLAVGQEVTVKVVEIDRQGRIRLTMKEVAPKQEHVDSVVADVAAEENA
>LR134532.1|VEJ48058.1|41846_42632_+|lipoprotein-NlpI
MLAEQHPNDHLEHEVMVAQISELLLVKGLKKEERAILHFERGVLYDSLGLWALARYDFDQTLALYPKLAAAFNYLGLYLLLEEDYSASLDIFNVLFELDPQYEYAFLNRGLNFYYVGRYELAQRDFLQFYQADKSDPYRTLWLYLNELKHNPQDASKNLAQRAMGLSDEYWGTYLVQYYLGKLSVKALFAQAQQFAQTNRAKYAEILTETYFYLAKLKLNSGQINEAETLFKLAIANQVYNFVEYRFALFELLKLKQSSKP
>LR134532.1|VEJ48059.1|42739_44572_+|cold-shock-DEAD-box-protein-A
MTETTMTFNDLGLPEFLLNAVSDLGFETPSPIQQSCIPNLLNGHDVLGMAQTGSGKTAAFSLPLLAQIDLDKKYPQMLVMAPTRELAIQVADACEHFCKYAKNTNIVTLYGGQRYDIQLRALRQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEQHQTALFSATMPDPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFLEVEKFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRNIEQLTKKPITEVEVPNHEVLQACRREKFKAKITVQLEHHDLGLYRSLLEDMFTADQDQEDIAAAMLMLLQGKQKLILPADPIIDRKTSRGDRGERRERGGRENPRSAERRGYGTPQAMDLYRIEVGRLDGAEVRHIVGAIANEGDINSRYIGHIKLYDDYTTIELPQGMPKELLGVFAKTRVMNKQMQMSFVGASNAGSSRDRDDFADRRGGKRKGRGDEPRFGREDRKFKEKSQRTFNDRPRRERRERQK
>LR134532.1|VEJ48060.1|44671_45520_-|pyrophosphorylase-ModD
MLYFSDNELDDFLLEDIYRGDLTTHALGLESIPAKICFKRKNAGIVAGISIAEKLLRKLDIHPQVYVKEGEFVEAGSLLLSAKGSANKLHQAWKVVQLVLEWSCGVAQYTAEMISNAKAINPAAVVACTRKSIPNTRKLATNAVLAAGGHIYRQGLSETLLVFTNHRNLLSDPEDWQGIVTRLKQQAPENKITLEADNLVQFEQILTADPDIIQLDKFTLEQVKQALHLLALANKNITLSVAGGVNKHNVAEYAKLGIQLFITSAPYYAAPEDIKVIIEKQV

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Crispr_ID: LR134532_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134532_2

1065283-1065551

TypeI-F

Consensus_repeat	Method
TTTCTAAGCCATCTACACGATGGTGAAC	PILER-CR
TTTCTAAGCCATCTACACGATGGTGAAC	CRT
TAAGCCATCTACACGATGGTGAAC	CRISPRCasFinder

4 spacers

cas1,cas3-cas2,cas6f,cas7f,cas5f,cas8f

The CRISPR arrays of LR134532_2

>merge|LR134532|2|1065283-1065551|PILER-CR,CRT,CRISPRCasFinder
TTTTTAAGCCATCTACACGATGGTGAACAACACCAAAACAATATGATTAACCACCAAACATTTCTAAGCCATCTACACGATGGTGAACCTGTTTCCAGCTTTTAACAGGTGCCCTGTAGTTTTCTAAGCCATCTACACGATGGTGAACCATGAGCCGTTTAGATGTTGTGGCCACTACACTTTTCTAAGCCATCTACACGATGGTGAACATTTAGTTTACGGTAAACCTATTAGCGGGAAATTTCTAAGCCATCTACACGATGGTGAAC

>LR134532|2|2|1065283-1065551|PILER-CR
TTTTTAAGCCATCTACACGATGGTGAAC	AACACCAAAACAATATGATTAACCACCAAACA
TTTCTAAGCCATCTACACGATGGTGAAC	CTGTTTCCAGCTTTTAACAGGTGCCCTGTAGT
TTTCTAAGCCATCTACACGATGGTGAAC	CATGAGCCGTTTAGATGTTGTGGCCACTACACT
TTTCTAAGCCATCTACACGATGGTGAAC	ATTTAGTTTACGGTAAACCTATTAGCGGGAAA
TTTCTAAGCCATCTACACGATGGTGAAC

>LR134532|2|2|1065283-1065551|CRT
TTTTTAAGCCATCTACACGATGGTGAAC	AACACCAAAACAATATGATTAACCACCAAACA
TTTCTAAGCCATCTACACGATGGTGAAC	CTGTTTCCAGCTTTTAACAGGTGCCCTGTAGT
TTTCTAAGCCATCTACACGATGGTGAAC	CATGAGCCGTTTAGATGTTGTGGCCACTACACT
TTTCTAAGCCATCTACACGATGGTGAAC	ATTTAGTTTACGGTAAACCTATTAGCGGGAAA
TTTCTAAGCCATCTACACGATGGTGAAC

>LR134532|2|2|1065287-1065551|CRISPRCasFinder
TAAGCCATCTACACGATGGTGAAC	AACACCAAAACAATATGATTAACCACCAAACATTTC
TAAGCCATCTACACGATGGTGAAC	CTGTTTCCAGCTTTTAACAGGTGCCCTGTAGTTTTC
TAAGCCATCTACACGATGGTGAAC	CATGAGCCGTTTAGATGTTGTGGCCACTACACTTTTC
TAAGCCATCTACACGATGGTGAAC	ATTTAGTTTACGGTAAACCTATTAGCGGGAAATTTC
TAAGCCATCTACACGATGGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
LR134532.1\|VEJ48973.1\|1065692_1066253_-\|CRISPR-associated-protein,-Csy4-family	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|274202
LR134532.1\|VEJ48970.1\|1060108_1060774_-\|sensor-histidine-kinase-like-protein	unknown	unknown	gnl\|CDD\|236842
LR134532.1\|VEJ48976.1\|1068258_1069605_-\|CRISPR-associated-protein,-Csy1-family	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
LR134532.1\|VEJ48967.1\|1057320_1058124_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|236753
LR134532.1\|VEJ48975.1\|1067265_1068249_-\|CRISPR-associated-protein,-Csy2-family	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|274204
LR134532.1\|VEJ48965.1\|1055847_1056312_-\|iron-sulfur-cluster-assembly-transcription-factor-IscR	unknown	unknown	gnl\|CDD\|273927
LR134532.1\|VEJ48979.1\|1074417_1075530_+\|antiporter-inner-membrane-protein	unknown	unknown	gnl\|CDD\|183270
LR134532.1\|VEJ48966.1\|1056390_1057107_-\|RNA-methyltransferase,-TrmH-family,-group-1	unknown	unknown	gnl\|CDD\|223639
LR134532.1\|VEJ48964.1\|1054585_1055800_-\|cysteine-desulfurase-IscS	unknown	unknown	gnl\|CDD\|184450
LR134532.1\|VEJ48969.1\|1058918_1060112_-\|sensor-histidine-kinase-like-protein	unknown	unknown	gnl\|CDD\|236842
LR134532.1\|VEJ48972.1\|1064132_1065113_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
LR134532.1\|VEJ48971.1\|1060831_1064152_-\|CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|187804
LR134532.1\|VEJ48980.1\|1076102_1079018_-\|hemoglobin-binding-protein-A	unknown	unknown	gnl\|CDD\|273808
LR134532.1\|VEJ48982.1\|1079590_1080082_-\|heme-iron-utilization-protein-like-protein	unknown	unknown	gnl\|CDD\|226244
LR134532.1\|VEJ48963.1\|1053967_1054354_-\|iron-sulfur-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
LR134532.1\|VEJ48974.1\|1066255_1067263_-\|CRISPR-associated-protein,-Csy3-family	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
LR134532.1\|VEJ48978.1\|1072187_1074236_-\|methionyl-tRNA-synthase	unknown	unknown	gnl\|CDD\|234655
LR134532.1\|VEJ48981.1\|1079059_1079575_-\|heme-iron-utilization-protein,-pyridoxamine-5'-phosphate-domain-type	unknown	unknown	gnl\|CDD\|200361
LR134532.1\|VEJ48977.1\|1069894_1072054_-\|S-adenosyl-L-dependent-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|236981
LR134532.1\|VEJ48968.1\|1058187_1058778_-\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134532.1\|VEJ48973.1\|1065692_1066253_-\|CRISPR-associated-protein,-Csy4-family	gnl\|CDD\|274202	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	3.31771e-90
LR134532.1\|VEJ48970.1\|1060108_1060774_-\|sensor-histidine-kinase-like-protein	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	3.17136e-48
LR134532.1\|VEJ48976.1\|1068258_1069605_-\|CRISPR-associated-protein,-Csy1-family	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	8.34039e-124
LR134532.1\|VEJ48967.1\|1057320_1058124_+\|inositol-monophosphatase	gnl\|CDD\|236753	PRK10757, PRK10757, inositol-1-monophosphatase.	6.23789e-151
LR134532.1\|VEJ48975.1\|1067265_1068249_-\|CRISPR-associated-protein,-Csy2-family	gnl\|CDD\|274204	TIGR02565, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	4.98451e-149
LR134532.1\|VEJ48965.1\|1055847_1056312_-\|iron-sulfur-cluster-assembly-transcription-factor-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	5.78928e-83
LR134532.1\|VEJ48979.1\|1074417_1075530_+\|antiporter-inner-membrane-protein	gnl\|CDD\|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	0
LR134532.1\|VEJ48966.1\|1056390_1057107_-\|RNA-methyltransferase,-TrmH-family,-group-1	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	5.62391e-118
LR134532.1\|VEJ48964.1\|1054585_1055800_-\|cysteine-desulfurase-IscS	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
LR134532.1\|VEJ48969.1\|1058918_1060112_-\|sensor-histidine-kinase-like-protein	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	3.5982e-156
LR134532.1\|VEJ48972.1\|1064132_1065113_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	0
LR134532.1\|VEJ48971.1\|1060831_1064152_-\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
LR134532.1\|VEJ48980.1\|1076102_1079018_-\|hemoglobin-binding-protein-A	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.54227e-115
LR134532.1\|VEJ48982.1\|1079590_1080082_-\|heme-iron-utilization-protein-like-protein	gnl\|CDD\|226244	COG3721, HugX, Putative heme iron utilization protein [Inorganic ion transport and metabolism].	7.85086e-79
LR134532.1\|VEJ48963.1\|1053967_1054354_-\|iron-sulfur-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.51567e-94
LR134532.1\|VEJ48974.1\|1066255_1067263_-\|CRISPR-associated-protein,-Csy3-family	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
LR134532.1\|VEJ48978.1\|1072187_1074236_-\|methionyl-tRNA-synthase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
LR134532.1\|VEJ48981.1\|1079059_1079575_-\|heme-iron-utilization-protein,-pyridoxamine-5'-phosphate-domain-type	gnl\|CDD\|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	2.01653e-97
LR134532.1\|VEJ48977.1\|1069894_1072054_-\|S-adenosyl-L-dependent-RNA-methyltransferase	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0

>LR134532.1|VEJ48972.1|1064132_1065113_-|CRISPR-associated-endonuclease-Cas1
MRKTPYIPSSDLKTIMHSKRANIYYLEHCRVLLNGGRVEYVTDEGRESFYWNIPIANTSCLLLGSGTSITQAAMRELSKAGVMVGFCSGGGTPLFNGTEAEIGCEFFSPQSEYRPVMYLQQWCKFWFDDEKRLAVAKALQQQRLALLEPIWSKLEWVYSCEKLTALVTQYQQEFAQAAHSQALLAAEGRLTTKLYALANQATMNEPDFKRSERGKSIDLVNQFLDHGNYLAYGLGATACWVLGLPHGLAVLHGKTRRGGLVFDAADIIKDSMILPQAFISAQNGDSEKEFRQACIQNLLRFGALDIIIERLQQLALQGASDEYFAG
>LR134532.1|VEJ48971.1|1060831_1064152_-|CRISPR-associated-helicase-Cas3
MNILLVSQCQKNALTETRRILDQFAERCGDRVWQTAITQAGLETLYKMLRQTARKNTAVACYWTHRKNSAELLWIVGDRRQFNDQGRVPTNRTQRNILRAEEEMAWQDAYSLQILTALSALLHDVGKSSVGFQAKLDKTKNAPRVADSYRHEWISARLFEAMIEGCQTDQAWLERLANWQVFEETNPIWFSKIIQDRPNENHFSDFAYLPPLARRVIWLITSHHRLPFTHDISRSQDCIKNLRKYAKLTFESLFKAYKPAVGWVSNGAEHPTPQAFWQFQRVATQSQAWQKHMARWAKKALNHPALFSVSENADPFLLLLARLCLMTGDHYYSAQDQNEKLGELNFPLLANTYRENHQPKQRLDEHLIGVCQTAVRFARLLPKFPRELPRIKQHKPFVQLAKDRFAWQNKAVNVARLLQQTSESQGFFGVNMASTGCGKTLANAKMMYALNDSKQGARFTIALGLRVLTLQTGSALKKRLHLSDQDLAVLVGGSAVKKLYALQQEKQNQLAQQGSESAEDWLEDIQVEGATYIESAVENEAVLSFLSKDDKTKKLLYAPIVSCTLDHLISASESVRGGHHIVPILRLLTSDLILDEPDDFAQEDLPALSRLVYLAGLFGSRVLLSSATLTPDFITGLFKAYQAGRKIYNQQKGIVAALPICCAWVDEFQQVQANCGQDEQFIQQHDEFVRKRAENLAKSPVRRQAEILSLPSLKPREGEDLHYGLLADTLLQKAMALHDLHGQTDPHSQKKVSVGLIRFSNIEPMIPLAKALFGLQASEKFADYQVHLCCYHSRQLLLLRSYLEEKLDKILDRHTPEQLFQHEEIALPMSQYKAKNHLFIVLGSPVTEVGRDHDYDWAIVDPSSMRSIIQLAGRVWRHRAEKVAEQPNIALLPINWRGLKVCYQQKDVIYHRPGFESHQHKLATHKLEQLISQRDLAHIQATPRIVKPEVLQASTQLADLEHHAIASLLNHPSENLVNLYWDPRYCNYLLANLPLMSEFRKSMAELEVVCVPDEDSHWGFGFYRAQKRDEETLSALPEIQYEPIQQDKQAIVQPWLVASLDTVLSELAEQLNVASPAEIAPTYLYASLPQYNEQLDWHYNEVYGFW
>LR134532.1|VEJ48970.1|1060108_1060774_-|sensor-histidine-kinase-like-protein
MKNIKYFTQKYVDWVIRLGRLRFSILGVIVLAILALCTQALLSVFIIGEVDWMDMIRSIVFGLISAPFVIYFFTVLVEKLERSRLGLAKMVENLRKEVSERVLAEKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEKLTETQQNYLKTIHVSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQEKNSLFNL
>LR134532.1|VEJ48969.1|1058918_1060112_-|sensor-histidine-kinase-like-protein
MTDKNLPTWFMVDYARLSQILWNLIGNAVKFTQEGRITLNVKRVSEYQISFSVSDTGIGIPANELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGSCFTLMLPVKEVEKPVRVQNQMPSTLNILLVEDIEVNVVVAKSVLEKLGYVVDVAMTGQQAIEKFEQQYYDLLLLDIQLPDMSGFAVAKYLWEGYENGQYDFLPPLIALTANVMHDKKEYQAQGMDDVLRKPLSIEELTACLVEYFGHDVSLCLETPTTHQITQDATHFDVKMLSELVEMLGTDFVLKNLALFKETMPEYMQALMTAYSVYQQDESQKADVLSCAHKIKGAAASVGLKRIQQIAAQAQDSEQGEWTENIHDWVQQLAQYWLLDVEALERYLNKSV
>LR134532.1|VEJ48968.1|1058187_1058778_-|Uncharacterised-protein
MKIFAVLSAFLMPFVVPNTTVNGYKDLRFGMTIEQAKETKLCEDQWHLPADDDWRRVVRGYWVCDKFRFDDGYAVARLRFIGGQLKSIELKMPEYPKYPAELLLHVLEEKYGKTIEVEQRDLIEEDILQGKIRKRRKNESALLDTYQFAKGTVSLTLLTYNGIPQPAEIIYSAPELLLLEKKLEDRPQRRTLLRDL
>LR134532.1|VEJ48967.1|1057320_1058124_+|inositol-monophosphatase
MNPMLNIAIRAARKAGNVIAKGYERRDDLQTTLKSTNDYVTNIDKASEEAIIEVIRKSYPDHTIITEESGALEGKDSDIQWVIDPLDGTTNFVKGLPHFSVSIAIRVKGRTEVGVVYDPIRNELFTAVRGEGAKINDMRLRVENKRDLAATVLTTGFPFKQTRLMPMQFAMMNNLIQDCADFRRMGSAALDLCYVAAGRVDGYFEVGVKAWDIAAGDLIVREAGGLVCDFNGGHSYLTSGHLVAAAPRIVKEILNKIQPCLSDEFKK
>LR134532.1|VEJ48966.1|1056390_1057107_-|RNA-methyltransferase,-TrmH-family,-group-1
MLENIRIVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQPLDEHAIALSAGAEDVLKQAKIVASFDEAVADCALVVGTSARLRHLQNSLIEPRECGTHAIAYAKQAPVAIVFGRERIGLTNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELRLAFLSQQAMTESLSTIDNTYPTHTEIEHFFQHTERLYTALGFIQNQGVMPKLRRLYQRVQLEKNELNILRGMLTAVEKRLK
>LR134532.1|VEJ48965.1|1055847_1056312_-|iron-sulfur-cluster-assembly-transcription-factor-IscR
MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRGPGGGYQLGLPANRISVGMVINAVNENIDVTRCLGRGDCQEGTECLTHSLWKELSLRIEAFLNEITLEELVEKNRQKRATIEFRGDFDNLIILDN
>LR134532.1|VEJ48964.1|1054585_1055800_-|cysteine-desulfurase-IscS
MKLPIYLDYAATCPVDERVAKKMMEYLTVEGNFGNPASRSHKFGWQAEEAVDVARNHIADLIGADSREIVFTSGATESDNLAIKGAAHFYQSKGKHIITCKTEHKAVLDTCRQLEREGFEVTYLNPKSDGLIDLEELKNAMRDDTILVSIMHVNNEIGVIQDIAAIGELCRARKILFHVDATQSVGKLPINLAELKVDLMSMSSHKLYGPKGIGALYVSRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRICKEEMASEMPRLKALRDRLYNGLKDIEETYVNGSMEHRLDSNLNISFNYVEGESLMMALRDIAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFTLGRYTTEEEIDYTIELVKNAVAKLRELSPLWDMFKEGIDLNTIEWTHH
>LR134532.1|VEJ48963.1|1053967_1054354_-|iron-sulfur-cluster-assembly-scaffold-IscU
MAYSNKVIDHYENPRNVGSLDKKDANVGTGMVGAPACGDVMQLQIKVSEEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDEAQAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKKEAK
>LR134532.1|VEJ48973.1|1065692_1066253_-|CRISPR-associated-protein,-Csy4-family
MTTHYIELKAIPQMDMLQSEVIGHCMQILHQFLPHFEGRVGVAFPAYGLGRTLGGIVRLFANQEDCNQLHQQLLRSGLSDYALISEVSKTPLPTEYRSYSRVHRKGQSAIRRTEKRLKSQGRWDESIRADMQQRQQNVAFFPHCHLKSASTGQRFILAVKENRMSQSCVGVFNAYGLSNSATVPHF
>LR134532.1|VEJ48974.1|1066255_1067263_-|CRISPR-associated-protein,-Csy3-family
MSKLSTPSVLAFERNLDISDAIFAQKDSKNDKDAPVPLRIREKSVRGTISNRLKNTITNDPAKLDAETEKANLQRVDVATLDDDKDTLVATFSVKVLPFTGRPNVCNDQNYQQQVMATVAQYLSEQGMDELAKRYATNIANARWLWRNRMGAEKIKIEVTCGENTIHFDDAKQFSLNHFDHQDDKIHQIAKEIKQGLLGEKFVILYVTAYANMGYGQEVYPSQELVLDNSTNNRKSKILYEINQKAGMHSQKVGNAIRTIDTWYAEEVAFPIAAEPYGAVTTLGTAFRQPKTKKNDFYTLFDNWLLKGEVPPVEQQHYVMSVLIRGGVFGASGKE
>LR134532.1|VEJ48975.1|1067265_1068249_-|CRISPR-associated-protein,-Csy2-family
MFQTGFYILFDHIKVQSANAISGPLSYGFPALTGLTGAMHALNRKLTHHPVQFGGVMVACHDYELQTYQNSAFSDRTFKQTRNPIKRNGETASIIEEGKIHLDLSLVVEVHVQDEHVFEALTDKTSQASQDFLQTCKNLLWQQRIAGGSVLEIGNVQLFNLEEDQDIPLALMPAFVLMDAKQELVNITEELKTGLRIGQLDEEGNVQKSPVPSCPDATALDALLEMATVHHIPEHANATASAWQTYSVKKGRGWLVPLPVGYQAISPLFAPGQLQHCRTQQYPSQYVETLYSLGKWVFPLSLPENLSQCFWRYTALQNNLYLISQGE
>LR134532.1|VEJ48976.1|1068258_1069605_-|CRISPR-associated-protein,-Csy1-family
MKLERIVDVLKLNSQLIKSEKLEKEEKKLQKTEEPTEREKILQKIAKINREYDHANLMSYRAGFMADQIKFGTHHPKGIHSSAKIECNTIYFDLKTPLPNTFCASQNIDNLTLDASGNAAALPLSKFFDIYVDDEKKIQLRDLLLQDHPVLDYCFAEDPELSVHYKKQFQKTLKSDFDNPISYEKCKQLLWVNSNSSVEDDDYTCLVPLYPSSLIYNFYQKVQFIKYNSDENKLNRENRKKSNVVQKPYKNLVDLAVFKVGGSNPQGVGQLASIQGGRNYLLSSLPPIMPSSRYFRLSPLQTTIFNDRLAYACRYGLRQLFEVVEARKNGYQVRDSRIDALNNILRTFLFHANLLQKQPAGWSKDSQLEMCEKYWLDPKRVHLPDEEAFRAEYEKGEWVAEVERRFALWLNKCLQKRFPHIAKDFDDAEYHEWRRNIRRTLRYRLRHP
>LR134532.1|VEJ48977.1|1069894_1072054_-|S-adenosyl-L-dependent-RNA-methyltransferase
MKQLFATTARGFEELLKVELTDLGAMDCQITQGGVHFHADEETQYRVLLWTRLASRILLPIVTCKVYSDLDLYSAVVGQNWLDYFDEKAHFMVDFNGTNREIRHTQFGAMRVKDGIVDYFERVGKPRPNVDKSQPDIRIHAYLNREELVISLDLSGDALHMRGYREDTGKAPLRETLAAAIVLRSGWQLGTPLVDPMCGSGTLLIEAAQMQANIAPQLHRLHWGFDFWKGHNQQAWDKVKGEAIELAQQTFNQNQKANFYGCDLDHRVLQKAKRNAQNAGVAHLIQWQQGDVAALKNPFVEEKGTVICNPPYGERLGTTPALIALYSVFGQRLKQQFADWNVSIFSGEPALLDCLRLRSHRQFKAKNGPLDCVQKNYHINARATASDENTQNLPEIDRTLTSAQVAVDFANRLQKNSKKIEKWAKQQGINAYRLYDADLPEYNLAVDRYDDHIVVQEYAAPKNIDENKARQRLLDAVTATLQVTGVETNKLILKVRQKQKGTNQYEKLANKGDYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMLGEMAKGKDVLNLFAYTGSATVHMALGGAKSTTTVDMSNTYLNWAEQNLLLNDLEGKQHKLIQADCLQWLARCDRQFDLIFVDPPTFSNSKRMEDSWDVQRDHIKLMTQLKRILRPNGTIVFSNNKRGFKMDVEGLETLGLSAVDITAKTLPLDFERNKQIHNCWVVRLKADL
>LR134532.1|VEJ48978.1|1072187_1074236_-|methionyl-tRNA-synthase
MANSARDILVTCALPYANGAIHLGHLLEHIQADIWVRFQRMRGHKVHFICADDAHGTPIMLNADKLGITPEALIARSKADHVADFEGFNISYDNYHSTHSPENDALTAEMYKKLRANGFIKSRTISQLFDPEKGMFLPDRFVKGTCPKCKAEDQYGDNCEVCSSTYSPTELINPRSVVSGATPVLKESEHFFFDLPAFEGMLKAWIKSGSLQPEIANKMQEWFESGLQQWDISRDAPYFGFKIPDTEDKYFYVWLDAPIGYMASFKNLCDKTGLNFDDFWKKDSSAELYHFIGKDIVYFHSLFWPAMLDGCDLRKPTNVFAHGYVTVNGVKMSKSRGTFIQASTYLRHLAPEYLRYYYAAKLNNRIEDLDLNLEDFVQRLNADVVNKFVNLASRSAGFITKRFDGKLSAEIAEPELLAEFVEKAAQIATYYEEREFGKVVREVMQLADKANKYIDDKAPWVMAKEEGREAELQAVCSMALQLFRLLAIYLKPVIPQIIARAEAFLQDELTWESLNRPLLNHAILPFKALAQRLDPKQIEAIVNETKEQFVAQQALEQKNSAKAEPASQVEPIAETISIEDFAKLDLRVAKVMKCEAVPESNKLLRFELDLGDHTRQVFSGIKEAYNNPAELEGRFVVVIANLAPRKMRFGVSEGMILSAGTGGDDLFLLNADQGVKPGMQVK
>LR134532.1|VEJ48979.1|1074417_1075530_+|antiporter-inner-membrane-protein
MGILFSDSLTDSQKQAIQNAFQQFQHPSLQKDLVSLNAIKKIEKGGETLRIEISMPFAWNTAFEQHKSTLSAELLTLAECKDIKWQLNYQIATLKRANSHPAVKGVKNIIAVTSGKGGVGKSTISVNLALALQRQGARVGILDADIYGPSIPHMLGVADQRPTSPDNQHITPIQAHHIFANSIGFLMEPDNATIWRGPMASSALSQLLQETLWPDLDYLVIDMPPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGVAMFERVSVPVLGIIENMSMHICSNCGHQETIFGTGGAERIAQKYNVKVLGQQALQIRLREDLDKGIPTVVAAPESDTAQSFMQLAEKVATELYWQGSVIPSEIMFKEVK
>LR134532.1|VEJ48980.1|1076102_1079018_-|hemoglobin-binding-protein-A
MRTTTIKFSANYMALLSYCGVILADSHQEATELDTITVSSQQDEMNIKEKKVGETVKTASQLKRQQVQDSRDLVRYETGVTVVEAGRFGSSGYAIRGVDENRVAITVDGLHQAETLSSQGFKELFEGYGNFNNTRNSVEIETLKVAKIAKGADSVKVGSGSLGGAVLFETKDARDFLTEKDWHIGYKAGYSTADNQGLNAVTLAGRYQMFDALIMHSKRHGHELENYDYKNGRDIQGKEREKADPYTITKESTLVKFSFSPTENHRFTVASDTYLQHSRGHDLSYNLVATTYIQLDEKESRHANDLTKRKNVSFTYENYTVTPFWDTLKLSYSQQRITTRARTEDYCDGNEKCDSYKNPLGLQLKEGKIVDRNGDPVNLQLVDGKHQVVDKAGKPFDVTSGTNYAAFSGKQLGPSYFWLDCTVFDCSKPVTTYKYRYSTETPVKEDIQLNKTMEVNGKTFATYDMGRERRYIILPNSQGYLPLDYKERDLNTKTKQINLDLTKAFTLFEIENELSYGGVYAKTTKEMVNKAGYYGRNPTWWAERTLGQSWNGTLRECKTSSSYNGMLCPRHEPLTSFLIPVEATTKSLYFADNIKLHNMLSVDLGYRYDDIKYQPEYIPGVTPKIADDMVKGLFIPLPEGEKVTVGTVVFTKPLTPEQIRKNVEENIAYIAQEKRFKKHSYSLGTTFDPLNFLRVQVKYSKGFRAPTSDELYFTFKHPDFTILPNPVLKPEEAKNQEIALTVHDNWGFVSTSVFQTKYRHFIDLAYLGSRNLSNSVGGQAQARDFQVYQNVNVDNAKVKGLEINARLNLGYFWHVLDGFNTSYKFTYQRGRLDGDRPMNAIQPKASVFGLGYDHKENKFGADLYITRVSEKKAKDTYNMFYKEQGYKDSAIRWRSDDYTLVDAVGYIKPIKNLTLQFGVYNLTDRKYLTWESARSIKPFGTSNLINQKTGAGINRFYSPGRNFKFSAEITF
>LR134532.1|VEJ48981.1|1079059_1079575_-|heme-iron-utilization-protein,-pyridoxamine-5'-phosphate-domain-type
MTTNRQEVLQNRLGPEIQELKAQCKTVMLATVGEDGNPNVSYAPFAINNGEYQVFISTIARHARNLQEVPKVSLMLIEDESQSRQIFARRRLSFDAVARVVERESEEWHSGVEALKARHGALMDELSRMKDFHLFSFKPSQGLFVKGFGQAFQVSNDDLVSFVHLVEGHQE
>LR134532.1|VEJ48982.1|1079590_1080082_-|heme-iron-utilization-protein-like-protein
MMLKAQIADYITQNPMAITLDMASHFGKPEGEILCALPDEFVRVFPGERAEEVLAEISSWGIFTTIIEKEGSIFEIKDRFPTGMVGRGYYNLNMKDEEGTLHGHLKLDNISKIAFMSLPFRGKESYNIAFIANNGQTIFKVYLGRDAERQLFPEQVQKFKAFI

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Crispr_ID: LR134532_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134532_3

1583643-1584153

Unclear

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTTAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTTAACN	CRT
TTTCTAAGCTGCCTATACGGCAGTTAACGT	PILER-CR

8 spacers

cas3

The CRISPR arrays of LR134532_3

>merge|LR134532|3|1583643-1584153|CRISPRCasFinder,CRT,PILER-CR
AATTGAAACTGCCTATACGGCAGTTAACGAAATAACGCTTGAGAAAATCAATAACAGACTTTTCTAAGCTGCCTACACGGGCAGTTAACGTTTCATTTCTTCATGCTTAATATAACAACTTTTTCTAAGCTGCCTATACGGCAGTTAACATAAAAAATCCATAAACCGCAAGCGTCCCTATTTTCTAAGCTGCCTATACGGCAGTTAACGTAGCCGATAAAAAACTCAACCAAAACAGCTATTTCTAAGCTGCCTATACGGCAGTTAACGTGTCGCTGTGATTTTGCTTTCTTCCACTTTTTTTCTAAGCTGCCTATACGGCAGTTAACATCGCTGTCTTGCTAACTTAACGCCACATTCTTTTCTAAGCTGCCTATACGGCAGTTAACTTGAAGAAGTATAAAGATTAACTTTTTGAATATTTCTAAGCTGCCTATACGGCAGTTAACGTCAGTTGGCTCTATTGTCGCACTCAGTGCCGTTTCTAAGCTGCCTATACGGCAGTTAACCT

>LR134532|3|3|1583643-1584151|CRISPRCasFinder
AATTGAAACTGCCTATACGGCAGTTAAC	GAAATAACGCTTGAGAAAATCAATAACAGACT
TTTCTAAGCTGCCTACACGGGCAGTTAA	CGTTTCATTTCTTCATGCTTAATATAACAACTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATAAAAAATCCATAAACCGCAAGCGTCCCTAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTAGCCGATAAAAAACTCAACCAAAACAGCTA
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTGTCGCTGTGATTTTGCTTTCTTCCACTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATCGCTGTCTTGCTAACTTAACGCCACATTCT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTGAAGAAGTATAAAGATTAACTTTTTGAATA
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTCAGTTGGCTCTATTGTCGCACTCAGTGCCG
TTTCTAAGCTGCCTATACGGCAGTTAAC

>LR134532|3|3|1583643-1584151|CRT
AATTGAAACTGCCTATACGGCAGTTAAC	GAAATAACGCTTGAGAAAATCAATAACAGACTT
TTCTAAGCTGCCTACACGGGCAGTTAAC	GTTTCATTTCTTCATGCTTAATATAACAACTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATAAAAAATCCATAAACCGCAAGCGTCCCTAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTAGCCGATAAAAAACTCAACCAAAACAGCTA
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTGTCGCTGTGATTTTGCTTTCTTCCACTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATCGCTGTCTTGCTAACTTAACGCCACATTCT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTGAAGAAGTATAAAGATTAACTTTTTGAATA
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTCAGTTGGCTCTATTGTCGCACTCAGTGCCG
TTTCTAAGCTGCCTATACGGCAGTTAAC

>LR134532|3|3|1583764-1584153|PILER-CR
TTTCTAAGCTGCCTATACGGCAGTTAACAT	AAAAAATCCATAAACCGCAAGCGTCCCTAT
TTTCTAAGCTGCCTATACGGCAGTTAACGT	AGCCGATAAAAAACTCAACCAAAACAGCTA
TTTCTAAGCTGCCTATACGGCAGTTAACGT	GTCGCTGTGATTTTGCTTTCTTCCACTTTT
TTTCTAAGCTGCCTATACGGCAGTTAACAT	CGCTGTCTTGCTAACTTAACGCCACATTCT
TTTCTAAGCTGCCTATACGGCAGTTAACTT	GAAGAAGTATAAAGATTAACTTTTTGAATA
TTTCTAAGCTGCCTATACGGCAGTTAACGT	CAGTTGGCTCTATTGTCGCACTCAGTGCCG
TTTCTAAGCTGCCTATACGGCAGTTAACCT

Protein	Signature genes	Signature genes Name	Protein_function
LR134532.1\|VEJ49809.1\|1581582_1582629_+\|ADP-heptose--LPS-heptosyltransferase	unknown	unknown	gnl\|CDD\|182835
LR134532.1\|VEJ49829.1\|1593623_1594292_+\|putative-NAD(P)H-nitroreductase-SH0546	unknown	unknown	gnl\|CDD\|380324
LR134532.1\|VEJ49797.1\|1575089_1575701_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|225467
LR134532.1\|VEJ49815.1\|1585739_1586453_+\|tRNA-(adenine-N(6)-)-methyltransferase	unknown	unknown	gnl\|CDD\|226608
LR134532.1\|VEJ49803.1\|1578318_1579338_+\|sucrose-operon-repressor	unknown	unknown	gnl\|CDD\|131470
LR134532.1\|VEJ49817.1\|1586500_1587205_-\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|225742
LR134532.1\|VEJ49827.1\|1592215_1593583_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
LR134532.1\|VEJ49821.1\|1590465_1591125_+\|ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|236659
LR134532.1\|VEJ49823.1\|1591188_1591758_+\|GTPase-activator	unknown	unknown	gnl\|CDD\|367878
LR134532.1\|VEJ49801.1\|1576850_1578293_+\|protein-ScrB	unknown	unknown	gnl\|CDD\|224536
LR134532.1\|VEJ49831.1\|1594387_1594723_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
LR134532.1\|VEJ49805.1\|1579566_1580991_+\|PTS-system-sucrose-specific-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|131051
LR134532.1\|VEJ49825.1\|1591760_1592192_+\|transmembrane-protein	unknown	unknown	gnl\|CDD\|378470
LR134532.1\|VEJ49807.1\|1581106_1581514_+\|putative-DR1885-like-metal-binding-protein	unknown	unknown	gnl\|CDD\|225403
LR134532.1\|VEJ49811.1\|1582625_1583591_+\|lipopolysaccharide-heptosyltransferase-1	unknown	unknown	gnl\|CDD\|236809
LR134532.1\|VEJ49819.1\|1587420_1590384_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
LR134532.1\|VEJ49799.1\|1575853_1576813_+\|fructokinase	unknown	unknown	gnl\|CDD\|236514
LR134532.1\|VEJ49813.1\|1584299_1585628_-\|ATP-dependent-RNA-helicase-SrmB	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236877
LR134532.1\|VEJ49793.1\|1571749_1573336_-\|putative-L-lactate-permease	unknown	unknown	gnl\|CDD\|224535
LR134532.1\|VEJ49795.1\|1573694_1575062_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452

Protein	Function_ID	Function_description	E-value
LR134532.1\|VEJ49809.1\|1581582_1582629_+\|ADP-heptose--LPS-heptosyltransferase	gnl\|CDD\|182835	PRK10916, PRK10916, ADP-heptose--LPS heptosyltransferase RfaF.	0
LR134532.1\|VEJ49829.1\|1593623_1594292_+\|putative-NAD(P)H-nitroreductase-SH0546	gnl\|CDD\|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	2.30268e-75
LR134532.1\|VEJ49797.1\|1575089_1575701_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|225467	COG2915, COG2915, Uncharacterized protein involved in purine metabolism [General function prediction only].	7.18065e-110
LR134532.1\|VEJ49815.1\|1585739_1586453_+\|tRNA-(adenine-N(6)-)-methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	4.51997e-92
LR134532.1\|VEJ49803.1\|1578318_1579338_+\|sucrose-operon-repressor	gnl\|CDD\|131470	TIGR02417, Fructose_repressor_Catabolite_repressor/activator., D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer. [Regulatory functions, DNA interactions].	0
LR134532.1\|VEJ49817.1\|1586500_1587205_-\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|225742	COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme metabolism].	9.77787e-73
LR134532.1\|VEJ49827.1\|1592215_1593583_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
LR134532.1\|VEJ49821.1\|1590465_1591125_+\|ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	5.11158e-102
LR134532.1\|VEJ49823.1\|1591188_1591758_+\|GTPase-activator	gnl\|CDD\|367878	pfam04220, YihI, Der GTPase activator (YihI). YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI.	8.94153e-60
LR134532.1\|VEJ49801.1\|1576850_1578293_+\|protein-ScrB	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	1.52017e-174
LR134532.1\|VEJ49831.1\|1594387_1594723_-\|transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.65249e-05
LR134532.1\|VEJ49805.1\|1579566_1580991_+\|PTS-system-sucrose-specific-transporter-subunit-IIBC	gnl\|CDD\|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
LR134532.1\|VEJ49825.1\|1591760_1592192_+\|transmembrane-protein	gnl\|CDD\|378470	pfam10675, DUF2489, Protein of unknown function (DUF2489). This is a bacterial family of uncharacterized proteins.	1.87463e-48
LR134532.1\|VEJ49807.1\|1581106_1581514_+\|putative-DR1885-like-metal-binding-protein	gnl\|CDD\|225403	COG2847, COG2847, Copper(I)-binding protein [Inorganic ion transport and metabolism].	9.84673e-43
LR134532.1\|VEJ49811.1\|1582625_1583591_+\|lipopolysaccharide-heptosyltransferase-1	gnl\|CDD\|236809	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC.	0
LR134532.1\|VEJ49819.1\|1587420_1590384_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
LR134532.1\|VEJ49799.1\|1575853_1576813_+\|fructokinase	gnl\|CDD\|236514	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.	0
LR134532.1\|VEJ49813.1\|1584299_1585628_-\|ATP-dependent-RNA-helicase-SrmB	gnl\|CDD\|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	0
LR134532.1\|VEJ49793.1\|1571749_1573336_-\|putative-L-lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	2.44663e-166
LR134532.1\|VEJ49795.1\|1573694_1575062_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0

>LR134532.1|VEJ49811.1|1582625_1583591_+|lipopolysaccharide-heptosyltransferase-1
MKICLVKTSSMGDILHSLPALTDAQRAIPNLQVDWVVEESFAEIPHWHSAVRQVIPIALRRWRKTPFTALTRKQWKTYRTLLQSEQYDAVIDAQGLLKSALFATRLARGTRHGYDRHSIREPIAACFYDKKYAISYQQHAVERIRQLFAQSLNYPLPHTQGDYGIARHFPQHAQTMPYVLFFHGTTRQDKFLPDRQWRTLAEKLTAQGIQIHVPWSNPQEKQRAERIAQGLDLVTILPKSTLSELAQQIVNASAVVSVDTGLAHLSAALDKTNLTLYGATDPKLIGSYGKNQYYLVAESMDKIDADEIFQKLTALLSLNTI
>LR134532.1|VEJ49809.1|1581582_1582629_+|ADP-heptose--LPS-heptosyltransferase
MHILIIGPSWVGDMMMSHSLYQTLKQQYPQCEIDVMAPNWCKPLLERMPEVRQAITMPLGHGAFALGDRYRLGKALRHQYDMAIVLPNSLKSAFIPFFAKIPLRRGWKGESRYLFLNDLRSNKKDYPMMVQRYIALAFEKGAVPKAEDLPRPVPYLTVDPVTQQHTLKKFEKQTALISPRPSIGFCPGAEFGPAKRWPHYHYAKLAEMLIQQGYALRLFGSAKDETVGEEIRQALPETMRHFCINLAGQTSLNEAVDLIADCTAIVTNDSGLMHIAAAVQRPLVALYGPTSPTYTPPLSEKAVIIRLIEGDLIKVRKGKDSDEGYHQSLIDIQPELVFDKLTGLLANT
>LR134532.1|VEJ49807.1|1581106_1581514_+|putative-DR1885-like-metal-binding-protein
MKSLTQLLFILTALLPTSLFAHIHVEQAQMFSAKAGEPSAIFMNIHNTGNEDVSLALVQSDIRADIVLHGTQHGKMIEVTGINLPAHQMTALKRGGLHIMVFNVEQDLNVGDSFPLRLLFDNGEIMHIEAKIIQY
>LR134532.1|VEJ49805.1|1579566_1580991_+|PTS-system-sucrose-specific-transporter-subunit-IIBC
MNFSQIAQQVIDKLGGKDNISAAAHCATRLRIVVKNENLIDKKGIENIEGVKGQFAVAGQYQIIFGSGTVNKVYAALSKLLGIGDMTTSEVAAAGTEKQGLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAKGFFVEEKNVVDLYPAIADLVDFINTIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALSDGWNYALTLAKGNIQYWHIFGLEIERVGYQGTVIPVLVASWVLATLEKNLRKVVPSFLDNLITPLFALFITGLLAFTVIGPIGREAGSLISTGLTWLYDTLGFVGGAIFGTLYAPIVITGMHQTFIAVETQLLAEVARTGGTFIFPIAAMSNIAQGAACLGAAYVMKDAKVRGIAVPSGISALLGITEPAMFGVNLRYRYPFISAMIGAGISSAVIALFNVKAIALGAAGLPGIPSIKPDSLAMYCVGMLISASIAFTLTVILGKRAQLKAE
>LR134532.1|VEJ49803.1|1578318_1579338_+|sucrose-operon-repressor
MSITNKKRITLSDIAKCCGLSTTTVSMILNNRGEEFKIKAETCQRVKAIAEQQGYRANVYAKSLKMQRSNVIGFVIPDLTNYGFACTAKILEKQCRENGLQLIIACSDDNPQQEKLAIERLLDRQIDFLITAPTHQDPSYYQKIGQHTPILQLDRYVPDLALNYVISNDSEHITALICRLCDQYQLTEFMYFGGQRTLSPSESRLAGFLQGLKQANLNLKKEWILHRTYQPESGYQMLAETEAKLGRLPQAIFTASYTLLEGVLRYLTEQKKMDLLLNRQLHLATFDDHDILNALPFHIHSIKQNHPQLAQQIFQHIMRYFAGKKSPNQKIDCDVIYRD
>LR134532.1|VEJ49801.1|1576850_1578293_+|protein-ScrB
MYIFNQGKYKSLHAQQVGELAQIRQHVLRDTQFRPTYHLAPETGLLNDPNGLVFDGEKYHIFYQWFPYAAIHGMKHWKHFITYDFHHFQAADPLIPDELFESHGCYSGGALLWQDQIVAFYTGNTRNAENQRIPHQNIAIFKKDGTLLKKRCLLNQAPTGYTEHVRDPKPFITEEGKIRFILGAQREDLSGTALIYEMTDLDATPQLIGEFKLPDFDNQQVFMWECPDLLKLQEQDLFLWSPQGKAQKTYCFQNHYHATYALGQYANLHFSAQHIEELDYGFDFYAPQSIQGSEGIYYAWVGLPDLTYPMDEYQWHSMLSLPRQFSIQQGILYQRPIPQVYDQCLPAHKYWVEDKQQIPHLDRSYVAFDAENQPFTLRFFTNQRGQQLILRYQNGILTLDRTYTTQTALMQQFGEQRHCILPQLNHVEIFFDRSVVEIFLNQGEKVMTSRFFIADRENALDSSRPLCVSVAELKPIILTP
>LR134532.1|VEJ49799.1|1575853_1576813_+|fructokinase
MMKIQSVGESKMGKIWVLDDAVVDLIPEGENTYLRCAGGAPANVAVGIARLGATTGFIGRVGDDPLGRFMLNKLQQENVCTQYMHLDPKQRTSTVIVDLKEGERSFTFMVNPSADQFLELSDLPHFNPNDWLHCCSIALINEPSRSSTFAAIHRIKAEGGFFSFDPNLRESLWNSPAEMKTVVNQVVALADVLKFSEEELLFLTDSDTLSDATTKLTQHYPDKLIIVTLGKLGATYYLQGKSQLVSSKKALIPVDTTGAGDAFVSGLLFGISQVKNWQNPTALVEIIKQANACGALATTAKGAMSALPNKQQLDAFLAE
>LR134532.1|VEJ49797.1|1575089_1575701_-|high-frequency-lysogenization-protein-HflD
MANYYDITLALAGVCQAAKLVQQFAHEGQADQAAFETSLNTLLQIYPEDTLAVFGGKAQNLKLGLETLLEQMHGTGSDLSRYWISLLALESKLNKDPHAKAELARRIQYLPTQLEHYDLLDEQMLSTLASIYVDVISPLGKKIQVTGSTLYLQQLAMHHRIRACLLAGIRSAVLWRQVGGTKWQVLFSRRKIIAMAKQIYSSL
>LR134532.1|VEJ49795.1|1573694_1575062_-|adenylosuccinate-lyase
MQLNALTALSPIDGRYQDKVSSLRSIFSEFGLLKFRVTVEVRWLQKLAATDQIQEVSLLSQEANDYLNHIVENFSVQDAERIKEIERTTNHDVKAVEYFLKEKSEALPELAKISEFIHFACTSEDINNLSHALMLKTAREEVILPEWQNLIADISALANEYKTIPLLSRTHGQPASPSTIGKEMANVVYRLQRQFKQLQQIDILGKINGAVGNYNAHLSAYPDIDWHQFSEEFVTSLGLTWNPYTTQIEPHDYIAEFFDNVARFNTIIIDFDRDLWGYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGAKLPVSRWQRDLTDSTVLRNLGVGLGYCLIAYAATRKGISKLEVNEQHLRDELDQNWEVLAEPIQTVMRRYGIEKPYEKLKALTRGKRVDAEAMREFIETLDIPAQEKIRLQQMTPATYIGAAVELVEKL
>LR134532.1|VEJ49793.1|1571749_1573336_-|putative-L-lactate-permease
MVFFLSILPIVLLIYLMVKRNSLPSYIALPLIAVLTYLLQAFYFGTDLTRLNANVIAGLIATQTPITIIFGAILFNRMMEVSGSTDVLRKWLANINPNPVAQIMIIGWAFAFMIEGASGFGTPAAIAAPILMGLGFKPLQVAMLALVMNSVPVSFGAVGTPTWFGFGPLGLSEDVVLEVGQKTAFIHFIAAFVIPVLALRFLVSWQQIKQNLVFIYISILACTIPYFLLAQVNYEFPALVGGAIGLFISILVANKGIGVSKTAQAEIQLEKVEFGVLVKALFPTMMLIAILIVTRIHQLGIKQLLNDATTWFSVSLGAFGEFKVSQALILSLNNILGQGINESYKTLYVPSLIPFIVTVIISIFVFKLNGAKAKTIAVSTYQQTKKPFFALLGALVMVKLMLVGNENYDSMVITIGKTFADVTGDKWVYFSSYLGAIGAFFSGSNTVSNLTFGGIQLSIAETTGMSVPLILALQSVGGAMGNMVCLNNIIAVCTVLNVSNQEGSILKRTVVPMFLYGVIAALVAVVIY
>LR134532.1|VEJ49813.1|1584299_1585628_-|ATP-dependent-RNA-helicase-SrmB
MTLATFQDFDLAPALLKALAKKGYTRPTAIQQETIPAAMEQRDVLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAESFAEFTNLSIATITGGVAYQNHGEIFNSNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFASRLLTDPLQIDAEPSRRERKKIQQWYYHADSNEHKIKLLARFIDEEQVSRGIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTVLVATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKIKRYTQELLKARIIEGLAPRTKAPKEGEVKTVSKKQKARIKAKREEKQKQEQKKKVKLRHKDTKNIGKRRKSNTLPANAE
>LR134532.1|VEJ49815.1|1585739_1586453_+|tRNA-(adenine-N(6)-)-methyltransferase
MSAKQNGFTFKQFHIEHHCCAMKVGTDGILLGAWADVSQAERILDLGTGTGLIALMLAQRSTKESEIHAVELEQAAYLQAQANIHASPWAQRVHVYQQDAAEFCRNAVNKFDLIVANPPYFPQGVDCATPQRDLARYTATHRHVDWLNWASHCLSEQGKISMVLPFEAGETLLKQTALYCIARCEVITKKGKAPQRLLLTFSLQAQPLQPSQLIIYDESNRYHPDFIGLTKDFYLAF
>LR134532.1|VEJ49817.1|1586500_1587205_-|nicotinamide-riboside-transporter-PnuC
MNLQAVKNEFLGGWKPFEVAWLSLFLIAQIVIYIQNPDSILGMISGISGILCVVFVSKGKVSNYFFGLIFAYTYFYVAWQANYLGEMNTVLYVYIPAQFIGYFLWRENLQKGSEGAESVIAKSLTLKGWAIVLGTITIGTLLFVQALNAAGGSSTGLDGLTTVIVVVAQLLMILRYREQWLLWIALNVISIVLWTQAKEGSLAMVTMYSAYLLNSLYGYYNWTKLEKTHRQSVQ
>LR134532.1|VEJ49819.1|1587420_1590384_+|RNA-polymerase-associated-protein-RapA
MKEHVLYFLSSHQNKENYNIMTFAVGQRWMSESENNLGLGLIVAIDMRTVTILFPASEEQRIYALNSAPLTRVLFQIGDEIVHHEGWKGNVLDILENNGVAFYLLKRQDNGEEITIQERDIAHQMTFSKPQDRLFTTQIDRNEHFTLRYQALTHQQAQFQSPLRGLRGIRAGLIPHQLHIAREVGQRTAPRVLLADEVGLGKTIEAGMILQQQLFAEKVERVLIIVPETLQHQWLVEMLRRFNLHFALFDEERCADFEDPASALWINPFSTESQIICALDWLCEKPKRVEQLLEAGFDMLIVDEAHHLGWSEHNPSLEYQLVEQLARQIPAVLLLTATPEQLGQESHFARLSLLDPDRFYDYQAFVQEQQQYQPVADAVQSLLADKPLSAVEKNHIADLLSEQDVEPMLKVIDSQAHDEQKALARQELIDNLIDRHGTSRVLFRNTRQGVKGFPHRTYNQITLELPKQYNNAANVLAMLGEKSENDSFYPEQMFQKLNPDARWWEFDPRLAWLITFLKNHREEKVLVICRHANTAIQLEQALREKEAIRAAVFHEKLSIVERDRAAAYFAQQEDGAQVLLSSSIGSEGRNFQFASHLVLFNLPDDPDLLEQCIGRLDRIGQSRDIQIHVPCFADTAQVVLARWYHEGLNAFEETCPMGMTLFETHQTQLNKFLQKPTALEGFAEFVSLTRKQQYELKQALEKGRDRLLELNSNGGEQAQQLATDIAEQDGTTELVNFTLNLFDIIGVDQEDLGEKSIVITPASNMLVPDFPGLKEEGATVTFDRQLSLAREDVEFMSWDHPLIRHGIDLITSGDIGKSAVSLLINKALPAGTLLLEMIYVVEAQAPKGLQLTRFLPPTPIRLLLDQKGNNLAEQVSFNALQKQLKPIGKNMANKVVKMVRPNIEQLVKLSEQKIVAQAQQIIHNAQQLADQTLSAELNRLTALQAVNKNIRQDEVDALENIRSQSLAQLQQATWRLDSLRVIVSNKE
>LR134532.1|VEJ49821.1|1590465_1591125_+|ribosomal-large-subunit-pseudouridine-synthase-A
MALISYTPPTDPYLDIMHYDDHFVVINKPSGLLSVPGNQPQYYDSAMSRVKEKYGFCEPAHRLDMSTSGLILFALSKAADRELKRQFREREPKKHYQALVWGHLEEDQGEVNLPLICDWENRPRQKICFERGKPALTLYEVLARYPNNTTRVKLTPITGRSHQLRLHMLALGHPILGDKFYAPPQAKALSPRLCLHAEQLAFRHPITQEWLSFSAPPAF
>LR134532.1|VEJ49823.1|1591188_1591758_+|GTPase-activator
MARKKKTRRVSDIMPVRKVDKKVELPKGKQGKKLTRYELDAKAREDKKKKKRKGLASGSRHSATENNNNHQALAKKDPRLGSRKKVPLIVEFVNKPEKGMTIPPMKVEEKVAKPDPMLELEQLENNECLNQLLDALDAGKTLSAEDQQFVDDCLDRIAQLMDELGISEDDDPEEDLLRTFEKIDINQFR
>LR134532.1|VEJ49825.1|1591760_1592192_+|transmembrane-protein
MMWTNILLILAVLVIVAMASYAGYLLLALQKQKKAIANMRTARSQRLTESIVIIAKAMQNGDCNHSEGVIRLKMLLDPLGKKLKNYQAMYQLYEVVMDMPTHEKRHELKKNERMRLDLQRESAEAELEQKIRLELQQLLIDMK
>LR134532.1|VEJ49827.1|1592215_1593583_+|oxygen-independent-coproporphyrinogen-III-oxidase
MSDIVWDLALIQKYNQSGPRYTSYPTALEFNENYTNQDFIQATKRYPNRPLSLYVHIPFCHKLCYFCACNKTITRHQHKADIYLDFLEREIENRASLFKDRIATQVHWGGGTPTYLTEQQSARLMAMLRKHFTIAPDAEISIEMDPREIELNMLDHLRRIGFNRMSMGVQDFNKDVQKAINRVQDEDFIEALLTRARQLGFQSTNLDLIYGLPLQTVDSFMFTLQKVIALNPDRLSVFNYAHLPSRFAGQAKIKNEQLPPPETKLTILQKMIETLGDAGYKFIGMDHFAKPDDELAIAQQQGVLHRNFQGYTTQEECDLLGLGVSAISLLGDTYAQNQKELKHYYTAIDNTGIALHKGFAMSEEDCLRRDVIKQLICNFKLDYQPIEQQYGIQFTSHFAEDLKLLAPLSGDGLLEIGEKAIQVSAKGRLLIRNICLCFDTYSREQAKRQQFSRII
>LR134532.1|VEJ49829.1|1593623_1594292_+|putative-NAD(P)H-nitroreductase-SH0546
MSISKTDILNAFHFRHACKAYDPSKKISEEDFRFILETGRLSPSSFGFEPWKFLVIENPKIKALISDTAWGAKDKVVDCSHFVVVLVRQPETLLADGEYVQHMMRDVHHIREEMRKIRQNFYRTFSEQDFALTENPKAFYDWACRQSYIALANMLTSAAMIGIDSTPIEGFPLEKMDHIFVEQGLYDPKTYKLSVMIAFGYRLNEPKAKTRQAFDDVVEWVR
>LR134532.1|VEJ49831.1|1594387_1594723_-|transcriptional-regulator
MQITRRNASTKGASVAEIDRKKVRNEIIQAMLMGELSQGEALRKLRIEMFGINQQHYIQLVKVSRQTLSNIENDKGNYSVETINKVFKPFGLELGLVPVSKALLKELFSTA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
LR134532_1	1.5\|30923\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	30923-30952	30	LR134532.1	879979-880008	1.0
LR134532_3	3.8\|1584092\|32\|LR134532\|CRISPRCasFinder,CRT	1584092-1584123	32	LR134532.1	2085905-2085936	1.0
LR134532_3	3.16\|1584094\|30\|LR134532\|PILER-CR	1584094-1584123	30	LR134532.1	2085907-2085936	1.0

1. spacer 1.5|30923|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to position: 879979-880008, mismatch: 0, identity: 1.0

aagaaattttaccacaaactcatctgtact	CRISPR spacer
aagaaattttaccacaaactcatctgtact	Protospacer
******************************

2. spacer 3.8|1584092|32|LR134532|CRISPRCasFinder,CRT matches to position: 2085905-2085936, mismatch: 0, identity: 1.0

gtcagttggctctattgtcgcactcagtgccg	CRISPR spacer
gtcagttggctctattgtcgcactcagtgccg	Protospacer
********************************

3. spacer 3.16|1584094|30|LR134532|PILER-CR matches to position: 2085907-2085936, mismatch: 0, identity: 1.0

cagttggctctattgtcgcactcagtgccg	CRISPR spacer
cagttggctctattgtcgcactcagtgccg	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134532_2	2.3\|1065431\|33\|LR134532\|PILER-CR,CRT	1065431-1065463	33	MH238467	Pasteurella phage Pm86, complete genome	23120-23152	1	0.97
LR134532_3	3.10\|1583732\|32\|LR134532\|CRT	1583732-1583763	32	NC_005329	Haemophilus ducreyi strain ATCC 27722 plasmid pNAD1, complete sequence	1751-1782	4	0.875
LR134532_2	2.7\|1065431\|37\|LR134532\|CRISPRCasFinder	1065431-1065467	37	MH238467	Pasteurella phage Pm86, complete genome	23120-23156	5	0.865
LR134532_3	3.2\|1583731\|33\|LR134532\|CRISPRCasFinder	1583731-1583763	33	NC_005329	Haemophilus ducreyi strain ATCC 27722 plasmid pNAD1, complete sequence	1750-1782	5	0.848
LR134532_3	3.15\|1584034\|30\|LR134532\|PILER-CR	1584034-1584063	30	MG592553	Vibrio phage 1.187.O._10N.286.49.F1, partial genome	77215-77244	5	0.833
LR134532_1	1.1\|30659\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	30659-30688	30	KJ847052	Idiomarinaceae phage 1N2-2, complete genome	20605-20634	6	0.8
LR134532_1	1.8\|31121\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	31121-31150	30	KX078568	Morganella phage vB_MmoP_MP2, complete genome	23068-23097	6	0.8
LR134532_1	1.9\|31187\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	31187-31216	30	MN855679	Bacteriophage sp. isolate 244, complete genome	6911-6940	6	0.8
LR134532_1	1.12\|31385\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	31385-31414	30	MN582082	Podoviridae sp. ctrTa16, complete genome	37740-37769	6	0.8
LR134532_1	1.13\|31451\|30\|LR134532\|CRISPRCasFinder,CRT	31451-31480	30	MN694264	Marine virus AFVG_250M904, complete genome	16036-16065	6	0.8
LR134532_2	2.4\|1065492\|32\|LR134532\|PILER-CR,CRT	1065492-1065523	32	MN693409	Marine virus AFVG_25M351, complete genome	28924-28955	6	0.812
LR134532_3	3.15\|1584034\|30\|LR134532\|PILER-CR	1584034-1584063	30	AJ630128	Bacteriophage S-PM2 complete genome	89974-90003	6	0.8
LR134532_3	3.15\|1584034\|30\|LR134532\|PILER-CR	1584034-1584063	30	NC_006820	Synechococcus phage S-PM2, complete genome	89974-90003	6	0.8
LR134532_3	3.15\|1584034\|30\|LR134532\|PILER-CR	1584034-1584063	30	LN828717	Synechococcus phage S-PM2 spontaneous deletion mutant, complete genome	80432-80461	6	0.8
LR134532_1	1.7\|31055\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	31055-31084	30	NZ_CP027438	Escherichia coli strain 2012C-4221 plasmid unnamed1, complete sequence	72542-72571	7	0.767
LR134532_1	1.13\|31451\|30\|LR134532\|CRISPRCasFinder,CRT	31451-31480	30	NZ_CP032629	Lactococcus sp. 1JSPR-7 plasmid unnamed2, complete sequence	2058-2087	7	0.767
LR134532_1	1.13\|31451\|30\|LR134532\|CRISPRCasFinder,CRT	31451-31480	30	NC_019351	Lactococcus lactis subsp. cremoris plasmid pAF22, complete sequence	19026-19055	7	0.767
LR134532_3	3.1\|1583671\|32\|LR134532\|CRISPRCasFinder	1583671-1583702	32	KM606997	Enterobacteria phage RB7, complete genome	22179-22210	7	0.781
LR134532_3	3.1\|1583671\|32\|LR134532\|CRISPRCasFinder	1583671-1583702	32	KM606998	Enterobacteria phage RB9, complete genome	22179-22210	7	0.781
LR134532_3	3.7\|1584032\|32\|LR134532\|CRISPRCasFinder,CRT	1584032-1584063	32	MG592553	Vibrio phage 1.187.O._10N.286.49.F1, partial genome	77213-77244	7	0.781
LR134532_1	1.6\|30989\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	30989-31018	30	NZ_CP040721	Rhodococcus pyridinivorans strain YF3 plasmid unnamed2, complete sequence	141858-141887	8	0.733
LR134532_1	1.6\|30989\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	30989-31018	30	MF919502	Mycobacterium phage Demsculpinboyz, complete genome	44697-44726	8	0.733
LR134532_1	1.6\|30989\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	30989-31018	30	NC_009820	Mycobacterium phage Tweety, complete genome	47562-47591	8	0.733
LR134532_1	1.7\|31055\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	31055-31084	30	AP019525	Tenacibaculum phage PTm5 DNA, complete genome	217892-217921	8	0.733
LR134532_1	1.7\|31055\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	31055-31084	30	AP019524	Tenacibaculum phage PTm1 DNA, complete genome	215727-215756	8	0.733
LR134532_1	1.8\|31121\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	31121-31150	30	MK290739	Pectobacterium phage Q19, complete genome	22970-22999	8	0.733
LR134532_1	1.12\|31385\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	31385-31414	30	MN693535	Marine virus AFVG_25M313, complete genome	21499-21528	8	0.733
LR134532_1	1.13\|31451\|30\|LR134532\|CRISPRCasFinder,CRT	31451-31480	30	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	271203-271232	8	0.733
LR134532_1	1.13\|31451\|30\|LR134532\|CRISPRCasFinder,CRT	31451-31480	30	NZ_CP016173	Bordetella flabilis strain AU10664 plasmid unnamed1, complete sequence	39118-39147	8	0.733
LR134532_3	3.7\|1584032\|32\|LR134532\|CRISPRCasFinder,CRT	1584032-1584063	32	AJ630128	Bacteriophage S-PM2 complete genome	89974-90005	8	0.75
LR134532_3	3.7\|1584032\|32\|LR134532\|CRISPRCasFinder,CRT	1584032-1584063	32	NC_006820	Synechococcus phage S-PM2, complete genome	89974-90005	8	0.75
LR134532_3	3.7\|1584032\|32\|LR134532\|CRISPRCasFinder,CRT	1584032-1584063	32	LN828717	Synechococcus phage S-PM2 spontaneous deletion mutant, complete genome	80432-80463	8	0.75
LR134532_3	3.10\|1583732\|32\|LR134532\|CRT	1583732-1583763	32	MK448764	Streptococcus phage Javan457, complete genome	19246-19277	8	0.75
LR134532_3	3.15\|1584034\|30\|LR134532\|PILER-CR	1584034-1584063	30	NZ_AP018257	Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome	140332-140361	8	0.733
LR134532_3	3.15\|1584034\|30\|LR134532\|PILER-CR	1584034-1584063	30	CP052843	Bacillus phage Hybphi3Ts, partial sequence	22767-22796	8	0.733
LR134532_1	1.6\|30989\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	30989-31018	30	NC_005017	Yersinia enterocolitica 8081 plasmid pYVe8081, complete sequence	44262-44291	9	0.7
LR134532_1	1.6\|30989\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	30989-31018	30	NC_004564	Yersinia enterocolitica plasmid pYVa127/90, complete sequence	46285-46314	9	0.7
LR134532_1	1.6\|30989\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	30989-31018	30	NC_019234	Yersinia enterocolitica (type O:8) plasmid pYV-WA314, complete sequence	46548-46577	9	0.7
LR134532_1	1.6\|30989\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	30989-31018	30	NC_008791	Yersinia enterocolitica subsp. enterocolitica 8081 plasmid pYVe8081, complete sequence	44263-44292	9	0.7
LR134532_1	1.6\|30989\|30\|LR134532\|PILER-CR,CRISPRCasFinder,CRT	30989-31018	30	NZ_CP009366	Yersinia enterocolitica strain WA plasmid unnamed, complete sequence	53301-53330	9	0.7
LR134532_3	3.1\|1583671\|32\|LR134532\|CRISPRCasFinder	1583671-1583702	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	648421-648452	9	0.719
LR134532_3	3.1\|1583671\|32\|LR134532\|CRISPRCasFinder	1583671-1583702	32	NZ_CP044084	Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence	87853-87884	9	0.719
LR134532_3	3.7\|1584032\|32\|LR134532\|CRISPRCasFinder,CRT	1584032-1584063	32	MN693355	Marine virus AFVG_25M40, complete genome	21056-21087	9	0.719
LR134532_3	3.7\|1584032\|32\|LR134532\|CRISPRCasFinder,CRT	1584032-1584063	32	CP052843	Bacillus phage Hybphi3Ts, partial sequence	22765-22796	9	0.719
LR134532_3	3.9\|1583671\|33\|LR134532\|CRT	1583671-1583703	33	NZ_CP044084	Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence	87852-87884	9	0.727
LR134532_3	3.12\|1583854\|30\|LR134532\|PILER-CR	1583854-1583883	30	NZ_CP024444	Moraxella osloensis strain NP7 plasmid pNP7-1, complete sequence	11673-11702	9	0.7
LR134532_3	3.12\|1583854\|30\|LR134532\|PILER-CR	1583854-1583883	30	NZ_CP040258	Moraxella osloensis strain MOXF1 plasmid pMOXF1, complete sequence	32731-32760	9	0.7
LR134532_3	3.15\|1584034\|30\|LR134532\|PILER-CR	1584034-1584063	30	NZ_AP018257	Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome	144013-144042	9	0.7

1. spacer 2.3|1065431|33|LR134532|PILER-CR,CRT matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 1, identity: 0.97

catgagccgtttagatgttgtggccactacact	CRISPR spacer
gatgagccgtttagatgttgtggccactacact	Protospacer
 ********************************

2. spacer 3.10|1583732|32|LR134532|CRT matches to NC_005329 (Haemophilus ducreyi strain ATCC 27722 plasmid pNAD1, complete sequence) position: , mismatch: 4, identity: 0.875

gtttcatttcttcatgcttaatataacaactt	CRISPR spacer
gcttcatctcttcatgtttaatataacaactc	Protospacer
*.*****.********.**************.

3. spacer 2.7|1065431|37|LR134532|CRISPRCasFinder matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 5, identity: 0.865

catgagccgtttagatgttgtggccactacacttttc	CRISPR spacer
gatgagccgtttagatgttgtggccactacactggaa	Protospacer
 ********************************

4. spacer 3.2|1583731|33|LR134532|CRISPRCasFinder matches to NC_005329 (Haemophilus ducreyi strain ATCC 27722 plasmid pNAD1, complete sequence) position: , mismatch: 5, identity: 0.848

cgtttcatttcttcatgcttaatataacaactt	CRISPR spacer
agcttcatctcttcatgtttaatataacaactc	Protospacer
 *.*****.********.**************.

5. spacer 3.15|1584034|30|LR134532|PILER-CR matches to MG592553 (Vibrio phage 1.187.O._10N.286.49.F1, partial genome) position: , mismatch: 5, identity: 0.833

gaagaagtataaagattaactttt---tgaata	CRISPR spacer
gaagtagtataaagatgaacttttacctga---	Protospacer
**** *********** *******   ***

6. spacer 1.1|30659|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to KJ847052 (Idiomarinaceae phage 1N2-2, complete genome) position: , mismatch: 6, identity: 0.8

acattgggtatcactacgtaatccgtcgag	CRISPR spacer
acattggctatcactacgttatcacccgcg	Protospacer
******* *********** ***  .** *

7. spacer 1.8|31121|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to KX078568 (Morganella phage vB_MmoP_MP2, complete genome) position: , mismatch: 6, identity: 0.8

ctcgatatgtaccagcaggagaccgtacct	CRISPR spacer
ctaactatgtaccggcagcagaccgtactt	Protospacer
** . ********.**** *********.*

8. spacer 1.9|31187|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to MN855679 (Bacteriophage sp. isolate 244, complete genome) position: , mismatch: 6, identity: 0.8

ccgttttggtccctgtaattggcaacttga	CRISPR spacer
ccattcatatccctgtaattggcaacctga	Protospacer
**.**.  .*****************.***

9. spacer 1.12|31385|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to MN582082 (Podoviridae sp. ctrTa16, complete genome) position: , mismatch: 6, identity: 0.8

taaactcaatgaatttaacttttatctacc	CRISPR spacer
taaactcaatgagtttaacttgggtctgct	Protospacer
************.********  .***.*.

10. spacer 1.13|31451|30|LR134532|CRISPRCasFinder,CRT matches to MN694264 (Marine virus AFVG_250M904, complete genome) position: , mismatch: 6, identity: 0.8

tccagccttatcaaattgattagcatgtat	CRISPR spacer
accagctttatcaaattgtttagcagctaa	Protospacer
 *****.*********** ******  **

11. spacer 2.4|1065492|32|LR134532|PILER-CR,CRT matches to MN693409 (Marine virus AFVG_25M351, complete genome) position: , mismatch: 6, identity: 0.812

atttagtttacggtaaacctattagcgggaaa	CRISPR spacer
ctttactttacggtaaacctattacagataaa	Protospacer
 **** ******************  *. ***

12. spacer 3.15|1584034|30|LR134532|PILER-CR matches to AJ630128 (Bacteriophage S-PM2 complete genome) position: , mismatch: 6, identity: 0.8

gaagaagtataaagattaactttttgaata	CRISPR spacer
gtcaaaatacaaagattaactttttgaatg	Protospacer
*  .**.**.*******************.

13. spacer 3.15|1584034|30|LR134532|PILER-CR matches to NC_006820 (Synechococcus phage S-PM2, complete genome) position: , mismatch: 6, identity: 0.8

gaagaagtataaagattaactttttgaata	CRISPR spacer
gtcaaaatacaaagattaactttttgaatg	Protospacer
*  .**.**.*******************.

14. spacer 3.15|1584034|30|LR134532|PILER-CR matches to LN828717 (Synechococcus phage S-PM2 spontaneous deletion mutant, complete genome) position: , mismatch: 6, identity: 0.8

gaagaagtataaagattaactttttgaata	CRISPR spacer
gtcaaaatacaaagattaactttttgaatg	Protospacer
*  .**.**.*******************.

15. spacer 1.7|31055|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027438 (Escherichia coli strain 2012C-4221 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gctgaggtggtataaagtactacagccatt	CRISPR spacer
gctgaggtgttataaagtacttgctcagtt	Protospacer
********* ***********    * .**

16. spacer 1.13|31451|30|LR134532|CRISPRCasFinder,CRT matches to NZ_CP032629 (Lactococcus sp. 1JSPR-7 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

tccagccttatcaaattgattagcatgtat	CRISPR spacer
agcataattatcaaattcattagcatatat	Protospacer
  **   ********** ********.***

17. spacer 1.13|31451|30|LR134532|CRISPRCasFinder,CRT matches to NC_019351 (Lactococcus lactis subsp. cremoris plasmid pAF22, complete sequence) position: , mismatch: 7, identity: 0.767

tccagccttatcaaattgattagcatgtat	CRISPR spacer
agcataattatcaaattcattagcatatat	Protospacer
  **   ********** ********.***

18. spacer 3.1|1583671|32|LR134532|CRISPRCasFinder matches to KM606997 (Enterobacteria phage RB7, complete genome) position: , mismatch: 7, identity: 0.781

gaaataacgcttgagaaaatcaataacagact	CRISPR spacer
aatagagcgcttgagcaaatcaataagagagt	Protospacer
.* * *.******** ********** *** *

19. spacer 3.1|1583671|32|LR134532|CRISPRCasFinder matches to KM606998 (Enterobacteria phage RB9, complete genome) position: , mismatch: 7, identity: 0.781

gaaataacgcttgagaaaatcaataacagact	CRISPR spacer
aatagagcgcttgagcaaatcaataagagagt	Protospacer
.* * *.******** ********** *** *

20. spacer 3.7|1584032|32|LR134532|CRISPRCasFinder,CRT matches to MG592553 (Vibrio phage 1.187.O._10N.286.49.F1, partial genome) position: , mismatch: 7, identity: 0.781

ttgaagaagtataaagattaactttt---tgaata	CRISPR spacer
gcgaagtagtataaagatgaacttttacctga---	Protospacer
 .**** *********** *******   ***

21. spacer 1.6|30989|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040721 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

ctctgaggtcatcgaagtgcctaccttcct	CRISPR spacer
cgggaaggtcatcgaagctcctaccttcgg	Protospacer
*   .************. *********

22. spacer 1.6|30989|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to MF919502 (Mycobacterium phage Demsculpinboyz, complete genome) position: , mismatch: 8, identity: 0.733

ctctgaggtcatcgaagtgcctaccttcct	CRISPR spacer
tggagaggtcatcgaactgcctaccgttcc	Protospacer
.   ************ ******** *.*.

23. spacer 1.6|30989|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to NC_009820 (Mycobacterium phage Tweety, complete genome) position: , mismatch: 8, identity: 0.733

ctctgaggtcatcgaagtgcctaccttcct	CRISPR spacer
tggagaggtcatcgaactgcctaccgttcc	Protospacer
.   ************ ******** *.*.

24. spacer 1.7|31055|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to AP019525 (Tenacibaculum phage PTm5 DNA, complete genome) position: , mismatch: 8, identity: 0.733

gctgaggtggtataaagtactacagccatt	CRISPR spacer
cacataatggtataaagtactacagacatt	Protospacer
  .. ..****************** ****

25. spacer 1.7|31055|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to AP019524 (Tenacibaculum phage PTm1 DNA, complete genome) position: , mismatch: 8, identity: 0.733

gctgaggtggtataaagtactacagccatt	CRISPR spacer
cacataatggtataaagtactacagacatt	Protospacer
  .. ..****************** ****

26. spacer 1.8|31121|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to MK290739 (Pectobacterium phage Q19, complete genome) position: , mismatch: 8, identity: 0.733

ctcgatatgtaccagcaggagaccgtacct	CRISPR spacer
agaactatgttccagcagcagaccgtacgt	Protospacer
   . ***** ******* ********* *

27. spacer 1.12|31385|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to MN693535 (Marine virus AFVG_25M313, complete genome) position: , mismatch: 8, identity: 0.733

taaactcaatgaatttaacttttatctacc	CRISPR spacer
caaacccaatgaattttacttttaataatg	Protospacer
.****.********** ******* . *.

28. spacer 1.13|31451|30|LR134532|CRISPRCasFinder,CRT matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.733

tccagccttatcaaattgattagcatgtat	CRISPR spacer
ttcagcattatcaaactgattagcagcaga	Protospacer
*.**** ********.*********   .

29. spacer 1.13|31451|30|LR134532|CRISPRCasFinder,CRT matches to NZ_CP016173 (Bordetella flabilis strain AU10664 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tccagccttatcaaattgattagcatgtat	CRISPR spacer
gccacccttatcaaattgattacacactct	Protospacer
 *** *****************     * *

30. spacer 3.7|1584032|32|LR134532|CRISPRCasFinder,CRT matches to AJ630128 (Bacteriophage S-PM2 complete genome) position: , mismatch: 8, identity: 0.75

ttgaagaagtataaagattaactttttgaata	CRISPR spacer
cagtcaaaatacaaagattaactttttgaatg	Protospacer
. *  .**.**.*******************.

31. spacer 3.7|1584032|32|LR134532|CRISPRCasFinder,CRT matches to NC_006820 (Synechococcus phage S-PM2, complete genome) position: , mismatch: 8, identity: 0.75

ttgaagaagtataaagattaactttttgaata	CRISPR spacer
cagtcaaaatacaaagattaactttttgaatg	Protospacer
. *  .**.**.*******************.

32. spacer 3.7|1584032|32|LR134532|CRISPRCasFinder,CRT matches to LN828717 (Synechococcus phage S-PM2 spontaneous deletion mutant, complete genome) position: , mismatch: 8, identity: 0.75

ttgaagaagtataaagattaactttttgaata	CRISPR spacer
cagtcaaaatacaaagattaactttttgaatg	Protospacer
. *  .**.**.*******************.

33. spacer 3.10|1583732|32|LR134532|CRT matches to MK448764 (Streptococcus phage Javan457, complete genome) position: , mismatch: 8, identity: 0.75

gtttcatttcttcatgcttaatataacaactt--	CRISPR spacer
ttttcttttcttcatgattaatat--tcatttgg	Protospacer
 **** ********** *******  . *.**

34. spacer 3.15|1584034|30|LR134532|PILER-CR matches to NZ_AP018257 (Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome) position: , mismatch: 8, identity: 0.733

gaagaagtataaagattaactttttgaata	CRISPR spacer
gaagaagtataaatattaacttgtgatgac	Protospacer
************* ******** * . .

35. spacer 3.15|1584034|30|LR134532|PILER-CR matches to CP052843 (Bacillus phage Hybphi3Ts, partial sequence) position: , mismatch: 8, identity: 0.733

gaagaagtataaagattaactttttgaata	CRISPR spacer
cctaaagtgtaaaaattaactttttgattt	Protospacer
   .****.****.************* *

36. spacer 1.6|30989|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to NC_005017 (Yersinia enterocolitica 8081 plasmid pYVe8081, complete sequence) position: , mismatch: 9, identity: 0.7

ctctgaggtcatcgaagtgcctaccttcct	CRISPR spacer
tgctgatgtcatcgtagtgcctaccccggc	Protospacer
. **** ******* **********..  .

37. spacer 1.6|30989|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to NC_004564 (Yersinia enterocolitica plasmid pYVa127/90, complete sequence) position: , mismatch: 9, identity: 0.7

ctctgaggtcatcgaagtgcctaccttcct	CRISPR spacer
tgctgatgtcatcgtagtgcctaccccggc	Protospacer
. **** ******* **********..  .

38. spacer 1.6|30989|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to NC_019234 (Yersinia enterocolitica (type O:8) plasmid pYV-WA314, complete sequence) position: , mismatch: 9, identity: 0.7

ctctgaggtcatcgaagtgcctaccttcct	CRISPR spacer
tgctgatgtcatcgtagtgcctaccccggc	Protospacer
. **** ******* **********..  .

39. spacer 1.6|30989|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to NC_008791 (Yersinia enterocolitica subsp. enterocolitica 8081 plasmid pYVe8081, complete sequence) position: , mismatch: 9, identity: 0.7

ctctgaggtcatcgaagtgcctaccttcct	CRISPR spacer
tgctgatgtcatcgtagtgcctaccccggc	Protospacer
. **** ******* **********..  .

40. spacer 1.6|30989|30|LR134532|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009366 (Yersinia enterocolitica strain WA plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ctctgaggtcatcgaagtgcctaccttcct	CRISPR spacer
tgctgatgtcatcgtagtgcctaccccggc	Protospacer
. **** ******* **********..  .

41. spacer 3.1|1583671|32|LR134532|CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

gaaataacgcttgagaaaatcaataacagact	CRISPR spacer
gatttaacgcttgagcaaattaataacttttg	Protospacer
**  *********** ****.******   .

42. spacer 3.1|1583671|32|LR134532|CRISPRCasFinder matches to NZ_CP044084 (Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gaaataacgcttgagaaaatcaataacagact	CRISPR spacer
gggtttggtcttgagaagatcaataacaggct	Protospacer
*.. * .  ********.***********.**

43. spacer 3.7|1584032|32|LR134532|CRISPRCasFinder,CRT matches to MN693355 (Marine virus AFVG_25M40, complete genome) position: , mismatch: 9, identity: 0.719

ttgaagaagtataaagattaactttttgaata	CRISPR spacer
ttaaagaagtaaaaagattaactggagattta	Protospacer
**.******** ***********    .  **

44. spacer 3.7|1584032|32|LR134532|CRISPRCasFinder,CRT matches to CP052843 (Bacillus phage Hybphi3Ts, partial sequence) position: , mismatch: 9, identity: 0.719

ttgaagaagtataaagattaactttttgaata	CRISPR spacer
tacctaaagtgtaaaaattaactttttgattt	Protospacer
*    .****.****.************* *

45. spacer 3.9|1583671|33|LR134532|CRT matches to NZ_CP044084 (Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

gaaataacgcttgagaaaatcaataacagactt	CRISPR spacer
gggtttggtcttgagaagatcaataacaggctt	Protospacer
*.. * .  ********.***********.***

46. spacer 3.12|1583854|30|LR134532|PILER-CR matches to NZ_CP024444 (Moraxella osloensis strain NP7 plasmid pNP7-1, complete sequence) position: , mismatch: 9, identity: 0.7

agccgataaaaaactcaaccaaaacagcta	CRISPR spacer
aggcgataaaaaactcaaccattctgcatt	Protospacer
** ******************   ..  *

47. spacer 3.12|1583854|30|LR134532|PILER-CR matches to NZ_CP040258 (Moraxella osloensis strain MOXF1 plasmid pMOXF1, complete sequence) position: , mismatch: 9, identity: 0.7

agccgataaaaaactcaaccaaaacagcta	CRISPR spacer
aggcgataaaaaactcaaccattctgcatt	Protospacer
** ******************   ..  *

48. spacer 3.15|1584034|30|LR134532|PILER-CR matches to NZ_AP018257 (Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome) position: , mismatch: 9, identity: 0.7

gaagaagtataaagattaactttttgaata	CRISPR spacer
gaagaagtataaatattaactggtgatgag	Protospacer
************* *******  * . . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

57661 : 133197

Shigella_phage(26.32%)

tRNA,head,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ48074.1\|57661_58564_-\|tRNA	glycyl-tRNA synthetase subunit alpha	NA	NA	NA	NA
VEJ48075.1\|58845_60099_+	membrane protein	NA	NA	NA	NA
VEJ48076.1\|60209_61067_+	naphthoate synthase	NA	NA	NA	NA
VEJ48077.1\|61011_61125_+	Uncharacterised protein	NA	NA	NA	NA
VEJ48078.1\|61149_61323_+	Uncharacterised protein	NA	NA	NA	NA
VEJ48079.1\|61319_62333_+	o-succinylbenzoate synthase	NA	NA	NA	NA
VEJ48080.1\|62403_62850_+	3-dehydroquinate dehydratase	NA	NA	NA	NA
VEJ48081.1\|63004_63466_+	biotin carboxyl carrier protein of acetyl-CoA carboxylase	NA	NA	NA	NA
VEJ48082.1\|63567_64914_+	biotin carboxylase	NA	NA	NA	NA
VEJ48083.1\|64996_65248_+	membrane protein	NA	NA	NA	NA
VEJ48084.1\|65237_66671_+	sodium/pantothenate symporter	NA	NA	NA	NA
VEJ48085.1\|66813_67695_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
VEJ48086.1\|67977_68976_+\|tRNA	tRNA-dihydrouridine synthase B	NA	NA	NA	NA
VEJ48087.1\|68956_69256_+	DNA-binding protein Fis	NA	NA	NA	NA
VEJ48088.1\|69481_73375_+	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.0e-114	53.4
VEJ48089.1\|73454_74951_+	Uncharacterized conserved protein	NA	NA	NA	NA
VEJ48090.1\|75251_75785_+	Transposase and inactivated derivatives	NA	NA	NA	NA
VEJ48091.1\|76087_76549_+	Uncharacterised protein	NA	NA	NA	NA
VEJ48092.1\|76608_77634_+	Uncharacterised protein	NA	NA	NA	NA
VEJ48093.1\|78135_80529_+	TonB-dependent receptor, beta-barrel domain protein	NA	NA	NA	NA
VEJ48094.1\|80674_81412_-	hemin import ATP-binding protein HmuV	M1HP82	Acanthocystis_turfacea_Chlorella_virus	1.9e-14	32.5
VEJ48095.1\|81423_82368_-	hemin transport system permease HmuU	NA	NA	NA	NA
VEJ48096.1\|82380_83169_-	hemin-binding periplasmic protein HmuT	NA	NA	NA	NA
VEJ48097.1\|83477_84032_-	Uncharacterised protein	NA	NA	NA	NA
VEJ48098.1\|84512_85592_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
VEJ48099.1\|85681_87337_-	alpha-D-phosphohexomutase family protein	A0A1X9I671	Streptococcus_phage	4.3e-83	34.9
VEJ48100.1\|87554_88109_-	Uncharacterised protein	NA	NA	NA	NA
VEJ48101.1\|88255_90013_-	ABC superfamily ATP binding cassette transporter, membrane protein	NA	NA	NA	NA
VEJ48102.1\|90197_91859_+	putative regulator of K+ conductance protein	NA	NA	NA	NA
VEJ48103.1\|91906_92197_-	Protein of uncharacterised function (DUF406)	NA	NA	NA	NA
VEJ48104.1\|92441_93767_+	outer membrane protein	NA	NA	NA	NA
VEJ48105.1\|93829_94372_+	methylated-DNA--protein-cysteine methyltransferase	M1PFU9	Streptococcus_phage	3.7e-23	45.7
VEJ48106.1\|94381_95050_+	DNA mismatch repair protein MutH	NA	NA	NA	NA
VEJ48107.1\|95115_95844_+	integral membrane protein TerC	A0A0R6PEZ3	Moraxella_phage	3.8e-31	38.1
VEJ48108.1\|95897_98690_-	DNA polymerase I	A0A142F1Q9	Bacillus_phage	3.8e-79	33.8
VEJ48109.1\|98936_99755_+	lipoprotein, acid phosphatase family	NA	NA	NA	NA
VEJ48110.1\|100083_100308_+	Uncharacterised protein	F6MIM3	Haemophilus_phage	2.5e-34	98.7
VEJ48111.1\|101030_101315_-	Uncharacterised protein	A0A0M3LNN9	Mannheimia_phage	1.4e-21	64.9
VEJ48112.1\|101293_101842_-	Uncharacterised protein	NA	NA	NA	NA
VEJ48113.1\|101844_104064_-	Uncharacterised protein	A0A1Y0SVL0	Pasteurella_phage	5.1e-87	33.1
VEJ48114.1\|104066_104666_-	Uncharacterized protein conserved in bacteria (DUF2313)	A0A2I7S9L6	Vibrio_phage	3.1e-23	33.5
VEJ48115.1\|104656_105724_-	Uncharacterized homolog of phage Mu protein gp47	A0A0C4UQU9	Shigella_phage	1.2e-70	43.1
VEJ48116.1\|105723_106134_-	Phage protein GP46	A0A0C4UR04	Shigella_phage	3.5e-18	38.7
VEJ48117.1\|106144_106693_-	Mu-like prophage protein gp45	A0A0C4UQZ3	Shigella_phage	1.7e-31	40.7
VEJ48118.1\|106724_107204_-\|tail	Mu-like prophage tail protein gpP	M4M9L5	Vibrio_phage	1.4e-13	38.1
VEJ48119.1\|107207_107576_-\|tail	Mu-like prophage tail protein gpP	C9DGQ3	Escherichia_phage	1.3e-08	32.4
VEJ48120.1\|107579_107975_-\|tail	Mu-like prophage tail protein gpP	A0A0C4UQS1	Shigella_phage	1.5e-26	42.1
VEJ48121.1\|107974_109339_-	Mu-like prophage DNA circulation protein	A0A0C4UR32	Shigella_phage	8.1e-35	27.9
VEJ48122.1\|109348_111250_-	tape measure domain	A0A2I7S9D9	Vibrio_phage	1.7e-51	33.6
VEJ48123.1\|111339_111723_-	Mu-like prophage FluMu protein gp41	C9DGP9	Escherichia_phage	2.7e-20	51.3
VEJ48124.1\|111725_112079_-\|tail	Phage tail tube protein	A0A2P1A4D6	Alteromonadaceae_phage	1.7e-08	32.7
VEJ48125.1\|112089_113553_-\|tail	Mu-like prophage tail sheath protein gpL	A0A0C4UQS0	Shigella_phage	2.0e-124	50.2
VEJ48126.1\|113552_113744_-	Protein of uncharacterised function (DUF2635)	NA	NA	NA	NA
VEJ48127.1\|113743_114256_-	Mu-like prophage protein gp37	NA	NA	NA	NA
VEJ48128.1\|114305_114725_-	Mu-like prophage protein gp36	NA	NA	NA	NA
VEJ48129.1\|114724_115144_-	Mu-like prophage FluMu protein gp35	NA	NA	NA	NA
VEJ48130.1\|115216_116140_-\|head	Mu-like prophage major head subunit gpT	A0A0C4UQR9	Shigella_phage	3.4e-93	55.4
VEJ48131.1\|116139_117204_-	Mu-like prophage I protein	A0A0C4UQU6	Shigella_phage	1.3e-72	48.9
VEJ48132.1\|117433_117868_-	Mu-like prophage protein gpG	NA	NA	NA	NA
VEJ48133.1\|119330_120890_-	Mu-like prophage protein gp29	A0A0C4UQR8	Shigella_phage	7.6e-146	52.8
VEJ48134.1\|120892_122413_-	Mu-like prophage FluMu protein gp28	A0A2I7S9C5	Vibrio_phage	2.1e-161	61.8
VEJ48135.1\|122412_122982_-	Protein of uncharacterised function (DUF3486)	A0A2I7S9D1	Vibrio_phage	6.5e-39	45.4
VEJ48136.1\|123015_123309_-	Uncharacterised protein	A0A2I7S9D8	Vibrio_phage	1.4e-24	65.6
VEJ48137.1\|123305_123635_-	Protein of uncharacterised function (DUF2730)	NA	NA	NA	NA
VEJ48138.1\|123631_123859_-	DnaK suppressor protein	NA	NA	NA	NA
VEJ48139.1\|123987_124260_-	Protein of uncharacterised function (DUF2681)	NA	NA	NA	NA
VEJ48140.1\|124262_124481_-	Protein of uncharacterised function (DUF2644)	F6MIK0	Haemophilus_phage	9.2e-26	88.4
VEJ48141.1\|124483_125029_-	N-acetyl-anhydromuranmyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	9.6e-80	75.4
VEJ48142.1\|125106_125541_-	Uncharacterized conserved protein	A0A0C4UQZ9	Shigella_phage	5.0e-23	43.7
VEJ48143.1\|125744_126299_-	Uncharacterised protein	A0A0M3LPP6	Mannheimia_phage	9.2e-46	54.1
VEJ48144.1\|126285_126834_-	Mu-like prophage protein gp16	NA	NA	NA	NA
VEJ48145.1\|127044_127230_-	Uncharacterised protein	F6MIJ2	Haemophilus_phage	6.4e-20	96.4
VEJ48146.1\|127229_127448_-	Uncharacterised protein	NA	NA	NA	NA
VEJ48147.1\|127516_127711_-	Uncharacterised protein	NA	NA	NA	NA
VEJ48148.1\|127710_128235_-	Mu-like prophage host-nuclease inhibitor protein Gam	F6MIJ0	Haemophilus_phage	1.2e-82	93.0
VEJ48149.1\|128259_128577_-	Uncharacterised protein	A0A0M3LQH1	Mannheimia_phage	2.0e-13	45.2
VEJ48150.1\|128579_129497_-	Mu B transposition protein, C terminal	A0A2I7S9C3	Vibrio_phage	3.9e-65	47.5
VEJ48151.1\|129532_130009_+	Uncharacterised protein	NA	NA	NA	NA
VEJ48152.1\|130227_132219_-	putative bacteriophage transcriptional regulator	C9DGL1	Escherichia_phage	3.0e-147	44.3
VEJ48153.1\|132238_132454_-	protein Ner	A0A2I7S995	Vibrio_phage	7.2e-15	60.6
VEJ48154.1\|132651_133197_+	putative bacteriophage transcriptional regulator	Q38013	Pseudomonas_phage	4.5e-05	41.7

DBSCAN-SWA_2

1457385 : 1464874

Moraxella_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ49576.1\|1457385_1458111_-\|protease	lon protease	A0A0R6PGP8	Moraxella_phage	1.1e-70	59.9
VEJ49578.1\|1458107_1459799_-\|protease	lon protease	A0A0R6PGP8	Moraxella_phage	2.2e-143	49.7
VEJ49580.1\|1459923_1461159_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.8e-125	56.5
VEJ49582.1\|1461174_1461756_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.1e-60	62.4
VEJ49584.1\|1461920_1463219_-	trigger factor	NA	NA	NA	NA
VEJ49586.1\|1463431_1463875_-	peptidoglycan-binding Lysin subgroup family protein	J9QDY6	Clostridium_phage	1.4e-07	44.3
VEJ49588.1\|1464046_1464874_+	protein YpfJ	A0A1I9SA48	Rhodococcus_phage	1.7e-32	37.7

DBSCAN-SWA_3

2209999 : 2229004

uncultured_Caudovirales_phage(66.67%)

capsid,tRNA,head,protease,portal,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ50978.1\|2209999_2212798_-\|tRNA	Isoleucyl-tRNA synthase	A0A2K9V7W4	Bandra_megavirus	6.2e-90	26.9
VEJ50980.1\|2212831_2213767_-	bifunctional riboflavin kinase/FMN adenylyltransferase	NA	NA	NA	NA
VEJ50982.1\|2213855_2215430_-	integral membrane protein	NA	NA	NA	NA
VEJ50984.1\|2215741_2216005_+	30S ribosomal protein S20	NA	NA	NA	NA
VEJ50986.1\|2216061_2216742_-	protein AhpA	NA	NA	NA	NA
VEJ50988.1\|2216821_2217784_+	phosphoserine phosphatase	NA	NA	NA	NA
VEJ50990.1\|2217790_2218282_+	nucleotide-binding protein	NA	NA	NA	NA
VEJ50992.1\|2218365_2218629_-	transglycosylase associated protein	NA	NA	NA	NA
VEJ50994.1\|2219553_2219961_+\|tail	putative minor tail protein	NA	NA	NA	NA
VEJ50996.1\|2219970_2221170_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A2H4JED2	uncultured_Caudovirales_phage	2.5e-128	61.9
VEJ50998.1\|2221221_2221776_+\|head,protease	phage prohead protease, HK97 family	A0A2H4JB68	uncultured_Caudovirales_phage	5.4e-54	61.0
VEJ51000.1\|2221777_2222989_+\|portal	phage portal protein, HK97 family	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.6e-143	62.0
VEJ51002.1\|2222972_2223329_+\|head,tail	Bacteriophage head-tail adaptor	A0A286S2A2	Klebsiella_phage	7.5e-09	39.1
VEJ51004.1\|2223315_2223642_+	uncharacterized phage protein (possible DNA packaging)	NA	NA	NA	NA
VEJ51006.1\|2223650_2224007_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.2e-27	50.9
VEJ51008.1\|2224064_2226794_+\|tail	Phage-related minor tail protein	A0A0M3LS69	Mannheimia_phage	1.1e-179	39.1
VEJ51010.1\|2226968_2227337_+\|terminase	Phage terminase, small subunit	A0A2H4JHS3	uncultured_Caudovirales_phage	3.3e-36	63.4
VEJ51012.1\|2227336_2229004_+\|terminase	phage D3 terminase family protein	A0A2H4JB64	uncultured_Caudovirales_phage	5.8e-245	70.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR134532

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection