CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR134533	Neisseria weaveri strain NCTC12742 genome assembly, chromosome: 1	1 crisprs	cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh,csa3,DinG	1	5	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR134533_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR134533_1

148688-152865

TypeI

Consensus_repeat	Method
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	PILER-CR
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CRISPRCasFinder
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CRT

62 spacers

cas2,cas1,cas4,cas7,cas8c,cas5

The CRISPR arrays of LR134533_1

>merge|LR134533|1|148688-152865|PILER-CR,CRISPRCasFinder,CRT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGTAAACCGTCCATAAAGGGATCGGGGGCTAAAACCTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTCTTGACTGGCGGAAATGCTGGTTCTGCAATTTCAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTAAATTGTCTCGGGTTGTATCGGGAAATTGGATGGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTGATTGCGGCCAATCCGCATCTGCCGTTGGCCGAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCCTCCGCGGCGATGGTTAAAAAGCTGAATGAAGAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGAAGCAACAGGCACATATTACGAAGCATTAGCCGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTCGTTCCAACCAATAAAAGCATATTCGTGTCCGTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTAGGCACAATCGACAGCAACCCGACACCTTTTGTAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGCGTTTCAAAAATATTTACCAGCGTGCCCTTCAGAATGTTTCAACACACAGCCGCCCGAAGGCGGCTGTATGTGTTTTAAATCAATGTTCCAAATCGCTCTCGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCTGTAAACGGAAAGTCTATCAACAAACCTGCACGAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTACGATTTCATCTGATTCAAATCCCAAATCGACCATGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTTACTCTGAAATACAAAGCCGATGTTCCAAAGCTGTCGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCATAGCAGCCTGATAAAACACACTGGCTCTGCCATGTTTCAACACACAGCCGCCCGAAGGCGGCTGTACCAGAATATCAAGAAAATATCAAAGTTCCTGCCGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTATGTCCGATATCGCCCGTTTCAGGGGAGAGATACAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCTTTGACGATGAGAGACACCGAAGTCCTTGACCAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTGATTGCGGCCAATCCGCATCTGCCGTTGGCCGAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGAAGCAACAGGCACATATTACGAAGCATTAGCCGTTTCAACACACAGCCGCCCGAAGGCGGCTGTACAGCAACGTGCAACAGAAAAAGCCAAACAACACGTTTCAACACACAGCCGCCCGAAGGCGGCTGTATTAATTACGAATGCCGATTATTTCTATGACTTTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCAATAGATTGCTGTCTCATTTCAGACGGCCAAAACCATGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTTAAGCAACAATACATTCAGCGTTTATGACGACATGTTTCAACACACAGCCGCCCGAAGGCGGCTGTAACTTGCAATTTATACAAGCCTGATTCTTGCTTTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCTAAGGCTTTTGCAAAAAGTTCTTTCTGCTCTTGAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTAAAACGGTCAATGTATTGTGTTCCAATTTCAGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTAAGTTCCATGCTTAAGCCTTTTATGTATCTGCTGTTTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTCGTTCTGCTTATTCTTTTGTTTTACGTCAACAAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTTGTATTTGGGATGACAATCAAGGGGAGCCTGATTATGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTCAACCGCCTCATCGCGGGTTTGGATACCCACCGTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTCGTCAGAAAAATCATGGATTCGGAGTATGGAAAATGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTTCTCTTTTTCCTAGCTTTATTTATCTTTATCTTTTTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTCATCCGCATGCCATCCGCCATTTATTCGGCACTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCTTCCAAGTCCGCAGCCGTCCCGTCTTGATGCAGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGGCAGCGTCGGCACAGTTTTTTAACCCCGAAACGGAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTTAAAGGCTTGGCAAAATCGCAATGCCTTGATTTTGTCGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCCTCCGCGGCGATGGTTAAAAAGCTGAATGAAGAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCCTGTTGACGATATACGTTTTCAAAAAATGCTGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTAAGCTCTTTTGTTTCAGCTTCTGTTAACTCAACACGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCTGAATGTTGCTGAATACTCCGTTTCTTCAGTTTTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTATGCCTTTTTCCTTGTTTGCAGACACGGCAGGCTCGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGGGCGCATGGAAAACGAACTTTCCGACATTTCCGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTACCCTATCATCGGATGCAAGCGCATCAATAAAGTGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGCGCGACAGTTGGCGGCCTGTGGTGCCGTTTGATGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGGCAAACAAAGTCAGAAAATGCGTCATCGGAATGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCTTAATTTTACTAAGTTCGGCTGGAAATATGGGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCACGGCCTGCGAAGTCTTGCAAGAACCTACCTGCGGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGGCACTTCCGAAAACGTGATTTCCGTCTTATAGGGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTATGAAATCCGCCGAAACACTGGCGGAGAAATACAGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGTCTTATTATACACACATGGCAAGACAACAACCAACGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTAAATCTGATGAACCTGATATGCTGTTTCCGTCTGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTATCGCGGTAGGGCTTGCTTCTGAAGCCTTCATGCTGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTGGCATAAAGCATTGGTCAAGGCGTGGCCGAAGTGATGTTTCAACACACAGCCGCCCGAAGGCGGCTGTAATTTCCAATTGTTCATTTATGGATGTGTAAAAAATGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGTGATTATTTTGTGAAACTCAATCAAAATGCACTGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCCCTGCTTCAGGGTGCGGTAAAAACGGCATCGGGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTCCCTGTTGATAACCCCGAATCCGATAAAGGAAACAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTGCGCAGGACTCAAAACCGCGCTTATGCAAAAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTTCCATGCATTCTTTTTTGTTCCAAACGGCAGCACCGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTACAGCTCGCAGACTGGATACGTACAAAGCGGATAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGCAGGCGCCTTTTTAGATGGTGTCTTGACTGGCGGTTTCAACACACAGCCGCCCGAAGGCGGCTGTGAAGATTCCCGTATATCAGCAATGATTAACAGGGTTTCAACACACAGCCGCCCGAAGGCGGCTGT

>LR134533|1|1|148688-152865|PILER-CR
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAACCGTCCATAAAGGGATCGGGGGCTAAAACCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCTTGACTGGCGGAAATGCTGGTTCTGCAATTTCA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TAAATTGTCTCGGGTTGTATCGGGAAATTGGATGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGATTGCGGCCAATCCGCATCTGCCGTTGGCCGAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCTCCGCGGCGATGGTTAAAAAGCTGAATGAAGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GAAGCAACAGGCACATATTACGAAGCATTAGCC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCGTTCCAACCAATAAAAGCATATTCGTGTCCGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AGGCACAATCGACAGCAACCCGACACCTTTTGTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GCGTTTCAAAAATATTTACCAGCGTGCCCTTCAGAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGTGTTTTAAATCAATGTTCCAAATCGCTCTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTGTAAACGGAAAGTCTATCAACAAACCTGCACGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACGATTTCATCTGATTCAAATCCCAAATCGACCAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTACTCTGAAATACAAAGCCGATGTTCCAAAGCTGTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CATAGCAGCCTGATAAAACACACTGGCTCTGCCAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACCAGAATATCAAGAAAATATCAAAGTTCCTGCCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGTCCGATATCGCCCGTTTCAGGGGAGAGATACA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTTTGACGATGAGAGACACCGAAGTCCTTGACCAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGATTGCGGCCAATCCGCATCTGCCGTTGGCCGAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GAAGCAACAGGCACATATTACGAAGCATTAGCC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACAGCAACGTGCAACAGAAAAAGCCAAACAACAC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATTAATTACGAATGCCGATTATTTCTATGACTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CAATAGATTGCTGTCTCATTTCAGACGGCCAAAACCAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTAAGCAACAATACATTCAGCGTTTATGACGACAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AACTTGCAATTTATACAAGCCTGATTCTTGCTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTAAGGCTTTTGCAAAAAGTTCTTTCTGCTCTTGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAAACGGTCAATGTATTGTGTTCCAATTTCAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAGTTCCATGCTTAAGCCTTTTATGTATCTGCTGTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCGTTCTGCTTATTCTTTTGTTTTACGTCAACAAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTGTATTTGGGATGACAATCAAGGGGAGCCTGATTAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCAACCGCCTCATCGCGGGTTTGGATACCCACCGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCGTCAGAAAAATCATGGATTCGGAGTATGGAAAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTCTCTTTTTCCTAGCTTTATTTATCTTTATCTTTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCATCCGCATGCCATCCGCCATTTATTCGGCACT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTTCCAAGTCCGCAGCCGTCCCGTCTTGATGCAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGCAGCGTCGGCACAGTTTTTTAACCCCGAAACGGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTAAAGGCTTGGCAAAATCGCAATGCCTTGATTTTGTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCTCCGCGGCGATGGTTAAAAAGCTGAATGAAGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCTGTTGACGATATACGTTTTCAAAAAATGCTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAGCTCTTTTGTTTCAGCTTCTGTTAACTCAACAC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTGAATGTTGCTGAATACTCCGTTTCTTCAGTTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGCCTTTTTCCTTGTTTGCAGACACGGCAGGCTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGGCGCATGGAAAACGAACTTTCCGACATTTCCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACCCTATCATCGGATGCAAGCGCATCAATAAAGTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GCGCGACAGTTGGCGGCCTGTGGTGCCGTTTGAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGCAAACAAAGTCAGAAAATGCGTCATCGGAATG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTTAATTTTACTAAGTTCGGCTGGAAATATGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CACGGCCTGCGAAGTCTTGCAAGAACCTACCTGCGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGCACTTCCGAAAACGTGATTTCCGTCTTATAGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGAAATCCGCCGAAACACTGGCGGAGAAATACAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GTCTTATTATACACACATGGCAAGACAACAACCAACG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAATCTGATGAACCTGATATGCTGTTTCCGTCTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATCGCGGTAGGGCTTGCTTCTGAAGCCTTCATGCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGGCATAAAGCATTGGTCAAGGCGTGGCCGAAGTGAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AATTTCCAATTGTTCATTTATGGATGTGTAAAAAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GTGATTATTTTGTGAAACTCAATCAAAATGCACTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCCTGCTTCAGGGTGCGGTAAAAACGGCATCGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCCTGTTGATAACCCCGAATCCGATAAAGGAAACA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGCGCAGGACTCAAAACCGCGCTTATGCAAAAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCCATGCATTCTTTTTTGTTCCAAACGGCAGCACCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACAGCTCGCAGACTGGATACGTACAAAGCGGATAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GCAGGCGCCTTTTTAGATGGTGTCTTGACTGGCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GAAGATTCCCGTATATCAGCAATGATTAACAGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT

>LR134533|1|1|148688-152865|CRISPRCasFinder
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAACCGTCCATAAAGGGATCGGGGGCTAAAACCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCTTGACTGGCGGAAATGCTGGTTCTGCAATTTCA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TAAATTGTCTCGGGTTGTATCGGGAAATTGGATGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGATTGCGGCCAATCCGCATCTGCCGTTGGCCGAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCTCCGCGGCGATGGTTAAAAAGCTGAATGAAGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GAAGCAACAGGCACATATTACGAAGCATTAGCC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCGTTCCAACCAATAAAAGCATATTCGTGTCCGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AGGCACAATCGACAGCAACCCGACACCTTTTGTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GCGTTTCAAAAATATTTACCAGCGTGCCCTTCAGAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGTGTTTTAAATCAATGTTCCAAATCGCTCTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTGTAAACGGAAAGTCTATCAACAAACCTGCACGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACGATTTCATCTGATTCAAATCCCAAATCGACCAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTACTCTGAAATACAAAGCCGATGTTCCAAAGCTGTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CATAGCAGCCTGATAAAACACACTGGCTCTGCCAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACCAGAATATCAAGAAAATATCAAAGTTCCTGCCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGTCCGATATCGCCCGTTTCAGGGGAGAGATACA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTTTGACGATGAGAGACACCGAAGTCCTTGACCAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGATTGCGGCCAATCCGCATCTGCCGTTGGCCGAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GAAGCAACAGGCACATATTACGAAGCATTAGCC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACAGCAACGTGCAACAGAAAAAGCCAAACAACAC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATTAATTACGAATGCCGATTATTTCTATGACTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CAATAGATTGCTGTCTCATTTCAGACGGCCAAAACCAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTAAGCAACAATACATTCAGCGTTTATGACGACAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AACTTGCAATTTATACAAGCCTGATTCTTGCTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTAAGGCTTTTGCAAAAAGTTCTTTCTGCTCTTGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAAACGGTCAATGTATTGTGTTCCAATTTCAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAGTTCCATGCTTAAGCCTTTTATGTATCTGCTGTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCGTTCTGCTTATTCTTTTGTTTTACGTCAACAAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTGTATTTGGGATGACAATCAAGGGGAGCCTGATTAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCAACCGCCTCATCGCGGGTTTGGATACCCACCGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCGTCAGAAAAATCATGGATTCGGAGTATGGAAAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTCTCTTTTTCCTAGCTTTATTTATCTTTATCTTTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCATCCGCATGCCATCCGCCATTTATTCGGCACT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTTCCAAGTCCGCAGCCGTCCCGTCTTGATGCAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGCAGCGTCGGCACAGTTTTTTAACCCCGAAACGGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTAAAGGCTTGGCAAAATCGCAATGCCTTGATTTTGTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCTCCGCGGCGATGGTTAAAAAGCTGAATGAAGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCTGTTGACGATATACGTTTTCAAAAAATGCTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAGCTCTTTTGTTTCAGCTTCTGTTAACTCAACAC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTGAATGTTGCTGAATACTCCGTTTCTTCAGTTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGCCTTTTTCCTTGTTTGCAGACACGGCAGGCTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGGCGCATGGAAAACGAACTTTCCGACATTTCCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACCCTATCATCGGATGCAAGCGCATCAATAAAGTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GCGCGACAGTTGGCGGCCTGTGGTGCCGTTTGAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGCAAACAAAGTCAGAAAATGCGTCATCGGAATG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTTAATTTTACTAAGTTCGGCTGGAAATATGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CACGGCCTGCGAAGTCTTGCAAGAACCTACCTGCGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGCACTTCCGAAAACGTGATTTCCGTCTTATAGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGAAATCCGCCGAAACACTGGCGGAGAAATACAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GTCTTATTATACACACATGGCAAGACAACAACCAACG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAATCTGATGAACCTGATATGCTGTTTCCGTCTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATCGCGGTAGGGCTTGCTTCTGAAGCCTTCATGCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGGCATAAAGCATTGGTCAAGGCGTGGCCGAAGTGAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AATTTCCAATTGTTCATTTATGGATGTGTAAAAAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GTGATTATTTTGTGAAACTCAATCAAAATGCACTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCCTGCTTCAGGGTGCGGTAAAAACGGCATCGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCCTGTTGATAACCCCGAATCCGATAAAGGAAACA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGCGCAGGACTCAAAACCGCGCTTATGCAAAAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCCATGCATTCTTTTTTGTTCCAAACGGCAGCACCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACAGCTCGCAGACTGGATACGTACAAAGCGGATAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GCAGGCGCCTTTTTAGATGGTGTCTTGACTGGCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GAAGATTCCCGTATATCAGCAATGATTAACAGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT

>LR134533|1|1|148688-152865|CRT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAACCGTCCATAAAGGGATCGGGGGCTAAAACCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCTTGACTGGCGGAAATGCTGGTTCTGCAATTTCA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TAAATTGTCTCGGGTTGTATCGGGAAATTGGATGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGATTGCGGCCAATCCGCATCTGCCGTTGGCCGAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCTCCGCGGCGATGGTTAAAAAGCTGAATGAAGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GAAGCAACAGGCACATATTACGAAGCATTAGCC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCGTTCCAACCAATAAAAGCATATTCGTGTCCGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AGGCACAATCGACAGCAACCCGACACCTTTTGTA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GCGTTTCAAAAATATTTACCAGCGTGCCCTTCAGAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGTGTTTTAAATCAATGTTCCAAATCGCTCTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTGTAAACGGAAAGTCTATCAACAAACCTGCACGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACGATTTCATCTGATTCAAATCCCAAATCGACCAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTACTCTGAAATACAAAGCCGATGTTCCAAAGCTGTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CATAGCAGCCTGATAAAACACACTGGCTCTGCCAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACCAGAATATCAAGAAAATATCAAAGTTCCTGCCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGTCCGATATCGCCCGTTTCAGGGGAGAGATACA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTTTGACGATGAGAGACACCGAAGTCCTTGACCAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGATTGCGGCCAATCCGCATCTGCCGTTGGCCGAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GAAGCAACAGGCACATATTACGAAGCATTAGCC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACAGCAACGTGCAACAGAAAAAGCCAAACAACAC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATTAATTACGAATGCCGATTATTTCTATGACTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CAATAGATTGCTGTCTCATTTCAGACGGCCAAAACCAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTAAGCAACAATACATTCAGCGTTTATGACGACAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AACTTGCAATTTATACAAGCCTGATTCTTGCTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTAAGGCTTTTGCAAAAAGTTCTTTCTGCTCTTGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAAACGGTCAATGTATTGTGTTCCAATTTCAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAGTTCCATGCTTAAGCCTTTTATGTATCTGCTGTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCGTTCTGCTTATTCTTTTGTTTTACGTCAACAAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTGTATTTGGGATGACAATCAAGGGGAGCCTGATTAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCAACCGCCTCATCGCGGGTTTGGATACCCACCGT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCGTCAGAAAAATCATGGATTCGGAGTATGGAAAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTCTCTTTTTCCTAGCTTTATTTATCTTTATCTTTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCATCCGCATGCCATCCGCCATTTATTCGGCACT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTTCCAAGTCCGCAGCCGTCCCGTCTTGATGCAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGCAGCGTCGGCACAGTTTTTTAACCCCGAAACGGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TTAAAGGCTTGGCAAAATCGCAATGCCTTGATTTTGTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCTCCGCGGCGATGGTTAAAAAGCTGAATGAAGA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCTGTTGACGATATACGTTTTCAAAAAATGCTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAGCTCTTTTGTTTCAGCTTCTGTTAACTCAACAC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTGAATGTTGCTGAATACTCCGTTTCTTCAGTTTT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGCCTTTTTCCTTGTTTGCAGACACGGCAGGCTC
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGGCGCATGGAAAACGAACTTTCCGACATTTCCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACCCTATCATCGGATGCAAGCGCATCAATAAAGTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GCGCGACAGTTGGCGGCCTGTGGTGCCGTTTGAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGCAAACAAAGTCAGAAAATGCGTCATCGGAATG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CTTAATTTTACTAAGTTCGGCTGGAAATATGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CACGGCCTGCGAAGTCTTGCAAGAACCTACCTGCGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GGCACTTCCGAAAACGTGATTTCCGTCTTATAGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATGAAATCCGCCGAAACACTGGCGGAGAAATACAG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GTCTTATTATACACACATGGCAAGACAACAACCAACG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AAATCTGATGAACCTGATATGCTGTTTCCGTCTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ATCGCGGTAGGGCTTGCTTCTGAAGCCTTCATGCT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGGCATAAAGCATTGGTCAAGGCGTGGCCGAAGTGAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	AATTTCCAATTGTTCATTTATGGATGTGTAAAAAAT
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GTGATTATTTTGTGAAACTCAATCAAAATGCACTG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCCTGCTTCAGGGTGCGGTAAAAACGGCATCGGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	CCCTGTTGATAACCCCGAATCCGATAAAGGAAACA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TGCGCAGGACTCAAAACCGCGCTTATGCAAAAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	TCCATGCATTCTTTTTTGTTCCAAACGGCAGCACCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	ACAGCTCGCAGACTGGATACGTACAAAGCGGATAA
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GCAGGCGCCTTTTTAGATGGTGTCTTGACTGGCG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT	GAAGATTCCCGTATATCAGCAATGATTAACAGG
GTTTCAACACACAGCCGCCCGAAGGCGGCTGT

Protein	Signature genes	Signature genes Name	Protein_function
LR134533.1\|VEJ49322.1\|147705_148542_+\|putative-N-6adenine-specific-DNA-methylase	unknown	unknown	unknown
LR134533.1\|VEJ49316.1\|145068_145806_+\|putative-phage-fiber-spike-protein	unknown	unknown	gnl\|CDD\|367075
LR134533.1\|VEJ49334.1\|153427_154441_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
LR134533.1\|VEJ49310.1\|142138_143194_+\|baseplate-J-like-protein	unknown	unknown	gnl\|CDD\|225836
LR134533.1\|VEJ49332.1\|153055_153343_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LR134533.1\|VEJ49350.1\|163620_165321_-\|putative-type-III-DNA-modification-methylase	unknown	unknown	gnl\|CDD\|225100
LR134533.1\|VEJ49312.1\|143190_143754_+\|phage-protein	unknown	unknown	gnl\|CDD\|226301
LR134533.1\|VEJ49342.1\|157043_158927_-\|phage-associated-protein	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
LR134533.1\|VEJ49308.1\|141777_142125_+\|Phage-protein-GP46	unknown	unknown	gnl\|CDD\|226816
LR134533.1\|VEJ49304.1\|139865_141011_+\|putative-phage-tail-protein	unknown	unknown	gnl\|CDD\|226814
LR134533.1\|VEJ49320.1\|146082_147378_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|224117
LR134533.1\|VEJ49318.1\|145807_146080_+\|Uncharacterised-protein	unknown	unknown	unknown
LR134533.1\|VEJ49340.1\|156161_157025_-\|phage-associated-protein	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
LR134533.1\|VEJ49314.1\|143757_145056_+\|putative-phage-tail-fiber-protein	unknown	unknown	gnl\|CDD\|377845
LR134533.1\|VEJ49338.1\|155444_156053_-\|recombinase-B	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
LR134533.1\|VEJ49346.1\|159706_162400_-\|putative-type-III-restriction-enzyme	unknown	unknown	gnl\|CDD\|368155
LR134533.1\|VEJ49348.1\|162547_163624_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|379118
LR134533.1\|VEJ49306.1\|141007_141676_+\|putative-baseplate-assembly-protein-V	unknown	unknown	gnl\|CDD\|226819
LR134533.1\|VEJ49344.1\|158923_159598_-\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
LR134533.1\|VEJ49336.1\|154616_155408_-\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR134533.1\|VEJ49338.1\|155444_156053_-\|recombinase-B	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	8.41695e-41
LR134533.1\|VEJ49308.1\|141777_142125_+\|Phage-protein-GP46	gnl\|CDD\|226816	COG4381, COG4381, Mu-like prophage protein gp46 [Function unknown].	3.03018e-49
LR134533.1\|VEJ49332.1\|153055_153343_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.00046e-31
LR134533.1\|VEJ49310.1\|142138_143194_+\|baseplate-J-like-protein	gnl\|CDD\|225836	COG3299, XkdT, Uncharacterized homolog of phage Mu protein gp47 [Function unknown].	3.18423e-115
LR134533.1\|VEJ49350.1\|163620_165321_-\|putative-type-III-DNA-modification-methylase	gnl\|CDD\|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	9.92594e-34
LR134533.1\|VEJ49312.1\|143190_143754_+\|phage-protein	gnl\|CDD\|226301	COG3778, COG3778, Uncharacterized protein conserved in bacteria [Function unknown].	8.28089e-84
LR134533.1\|VEJ49342.1\|157043_158927_-\|phage-associated-protein	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
LR134533.1\|VEJ49334.1\|153427_154441_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
LR134533.1\|VEJ49304.1\|139865_141011_+\|putative-phage-tail-protein	gnl\|CDD\|226814	COG4379, COG4379, Mu-like prophage tail protein gpP [General function prediction only].	0
LR134533.1\|VEJ49320.1\|146082_147378_+\|Uncharacterised-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	5.45383e-11
LR134533.1\|VEJ49316.1\|145068_145806_+\|putative-phage-fiber-spike-protein	gnl\|CDD\|367075	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK. This family contains bacterial and phage tail fibre assembly proteins. E.coli contains several members of this family although the function of these proteins is uncertain. Using the lambda phage members as examples, there are both gptfa and gpK tail proteins here. GpK forms part of the TTC or tail-tip complex that is located at the distal end of the tail. TTCs form the platform on which the tail-tube proteins self-assemble and are also the attachment point for fibers or receptor-binding proteins that mediate phage-adsorption to the surface of the host cell. TTC assembly starts with gpJ, which is also known as the central tail fibre and is involved in host-cell adsorption. It is the C-terminus of gpJ that interacts with the lamB receptor on host cells. A number of intermediates including gpK then interact with gpJ during tail morphogenesis.	0.00634444
LR134533.1\|VEJ49340.1\|156161_157025_-\|phage-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.30705e-152
LR134533.1\|VEJ49314.1\|143757_145056_+\|putative-phage-tail-fiber-protein	gnl\|CDD\|377845	pfam07484, Collar, Phage Tail Collar Domain. This region is occasionally found in conjunction with pfam03335. Most of the family appear to be phage tail proteins; however some appear to be involved in other processes. For instance a member from Rhizobium leguminosarum may be involved in plant-microbe interactions. A related protein MrpB is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologs but the intervening sequence is not. Much of the function of phage T4 appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the 'collar'. The domain may bind SO4, however the residues accredited with this vary between the PDB file and the Swiss-Prot entry. The long unconserved region maybe due to domain swapping in and out of a loop or reflective of rapid evolution.	5.50553e-24
LR134533.1\|VEJ49346.1\|159706_162400_-\|putative-type-III-restriction-enzyme	gnl\|CDD\|368155	pfam04851, ResIII, Type III restriction enzyme, res subunit.	3.83357e-22
LR134533.1\|VEJ49348.1\|162547_163624_-\|DNA-binding-protein	gnl\|CDD\|379118	pfam13310, Virulence_RhuM, Virulence protein RhuM family. There are currently no experimental data for members of this group or their homologs. However, these proteins are implicated in virulence/pathogenicity because RhuM is encoded in the SPI-3 pathogenicity island in Salmonella typhimurium.	1.23589e-147
LR134533.1\|VEJ49306.1\|141007_141676_+\|putative-baseplate-assembly-protein-V	gnl\|CDD\|226819	COG4384, COG4384, Mu-like prophage protein gp45 [Function unknown].	6.36227e-88
LR134533.1\|VEJ49344.1\|158923_159598_-\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	5.47492e-113

>LR134533.1|VEJ49322.1|147705_148542_+|putative-N-6adenine-specific-DNA-methylase
MMPKYHAKAPLPFVGQKRNFIKHYLGVLDKIPGSGSGWNIVDVFGGSGLLAHVAKRIKPDARVIYNDFDNYAARVKAIPDINRLRRLISGYLAGYVKKQRIPDDVKQVIIGEIERFDGYKCHVVLASWFLFSGRQAANLERFYRSEWYFNLPLSDYPVADDYLDGLEIIRQSYETLIPQFSDDPQALLVLDPPYLSTTQAAYAQDGRFGLVDYLKLVNLVRPPYLFFSSTRSEFIDYIDAVVSMQLDNWHVFDHSTRLTVQAKVSKYASYEDNLVYKL
>LR134533.1|VEJ49320.1|146082_147378_+|Uncharacterised-protein
MPPVKNLNLYRGDTHYFEFVLSGLGDVGGATVVMDIVPGNGGQVLKPKLTVRGQVVEVLFDSRLTHDLTWQLGNYDMRAIWGGVVKTIAKGTVTISQSVTPVSDRLGEGGSVRREAVLLSAGEPPISILPGLSPEDAEQRIAAVERRLDELGAAVADAEESPEVARLLDTVQQLQTQLQQALLTGNADVGQIRRQLAAVETALAQSGGLEARLQALESGKQQAEVLAVELASLKQQLADKAQSSAIEECKQLIRQAQSDLEQRLRQLQSGGQVSSSEIAALDQRVQQLETQLRELQRAALAGNQVGNPEAVAQLQQRIEAVETQLAKIAALEADIQQLRGRLNKPKMERIHLRQDVWSNGGYPWTTVQFANSYTQPELSYQIVHKSLNVSFLELNYCNLTGSSVQIRSNFKFESIDVDYVVHLTVREGADV
>LR134533.1|VEJ49318.1|145807_146080_+|Uncharacterised-protein
MRKLSLDVAAYAYQVAISADQMLNAVLGGFADETLSSRIYRNSTLADKPRRRWRAAKCAVNALFFWQADHCRGAYNSERVRRHMHGHFKE
>LR134533.1|VEJ49316.1|145068_145806_+|putative-phage-fiber-spike-protein
MTIQWKKPVCQLDSDGLYLGQNEADLDINARDGSYIIPGGCIDVEPPENRDGHAARWTGEAWEYIPDHRGKTAYQTADGQAVIVVTAGGLSDGLTFTAPPSHWHTWDGKQWALAEQDAAEWLAQAKAAKLAEINAAAQSYVCHLSKSNDVPEFERQTWPLQANEALAWEQDPSTDTPLLAQIAAARGCDLDGLRGKALAKAKQFAALSATVAGQRQAYADRLDAAQEVAAVAAIEPVYQLPQEAV
>LR134533.1|VEJ49314.1|143757_145056_+|putative-phage-tail-fiber-protein
MHAIDTPDKQFKDGNGTSELGTILPAWWLNQVQGEILAVLTAAGIQPNKAKTNQLAEAINRLFVGQAGDQDVAGEKTFTSLLTAGRAEHWGKIRMPVQGGGHWFLEANPQSVLSDGSTLKFNIKYEQTSGQVRYIHFPELGSANRTVAYQDWVIARIAGVESSAVKTTGNQTVGGKKTFSESVDFAGGLRISGNNTEQWAELGYAASAVYLKNPSSNKSLQLGDDGTIKYQGDKLVLWSDRRDAVDLANSQTVATSQAVKTVNDKAEQAAPPGTIVAYSGTTAPPGWLKCNGANVSRATYAALFAVIGTTYGAGDGRTTFTLPDIRNEFIRGLDDGRGLDSSRALGSKQTARLPQHSHGVGFMIGDDMRFAKAGVNYNIDSGKDFCLSAGANSTTSVERYSGNGQRVETIATYGMTGDLAPSNIAELYIIKI
>LR134533.1|VEJ49312.1|143190_143754_+|phage-protein
MSYQDILRGLLPPVSYARNAPRVRAQAEIDGAALDAVAESAQSVADAVDPRSAGQMLADWERVLGLDGTGKNRQRRVLAVMAKLNETGGLSIPYFVRLAEAAGYQIQINEPQPFRAGVNRAGDRLAPQEIMWVWHVNVRGGNNRITRFRAGISAAGDRLTDYGDAVIETVIQDLKPAHTAVRFTYEA
>LR134533.1|VEJ49310.1|142138_143194_+|baseplate-J-like-protein
MFETPTFEQIRERILRDTKSLWPDADISPDSDHYVHASRLASCAEGQYVHQSWIVRQIFPDTADREYLERHASMRGLRRRNPTTASGTLTVSGIAQSVLSDGLQVRIGQRFYRTTARAVIGSGGTAEVPAIAEEPGAAANVRDGEAQLMAAPAGVATECRLTVQGGTDRESDASLLARLLEIIRRPPAGGNRYDYKNWALSVDGVTSAYVYPLRRGLGTVDIAITSADGVPSEETVRRVQAYIDEMRPVTAKNALVLKPTVTAVPVTVQVKLDGIDLAEAKRRIQTALNEYFDTLIPGDGLTVSQIEAAVSNTEGVIDRRLITPTANRAADTVNRIEWFKAGAINVTEMPS
>LR134533.1|VEJ49308.1|141777_142125_+|Phage-protein-GP46
MDKELNPGTGDYTGRTVDTLQNAVYIRLMTPLGSWWADKTLGSLLHLLQREKDLQRVSLLAEQYAEEALQPIVKSGRADKITVRAEQPHDGRLILHIRVDTAAGGFDYRHEVPVI
>LR134533.1|VEJ49306.1|141007_141676_+|putative-baseplate-assembly-protein-V
MSLSKLAKKTAQTAKNIGETLRAAFRGKITLVVSSEPIQRVQLSGLAHETLQDLEHLQEYGFASHPPDGSEAVVIPLGGNTSHGVIVCSQHGSYRIKNLKPGETAIFNHEGAKIVIKQGKIIEADCDVYRVNCKQYEVNAATDAKFNAPLVETSAVLTAQGQINGNGGMAVEGGNGATFSGDVSQTGGSFNTDGDVVAGDISLRRHPHTDSMGGKISPPEPA
>LR134533.1|VEJ49304.1|139865_141011_+|putative-phage-tail-protein
MQNNSYGYAVSVRVGGKEHRHWERYDIDSDFLIPADSFDFAIGRSGPEAAIPDLSGETCEVVIDGQTVMTGIIGSQRHGKSKGSRELSLSGRDLAGFLVDCSAPQLNVKGMTVLDAAKKLAAPWPQIKAVVLKAENNPALDKIDIEPGETVWQALTHIANSVGLHPWLEPDGTLVVGGADYSSPPVATLCWSRTDSRRNIERMDIEWDTDNRFSEVTFLAQSHGRSGDSAKHDLKWVYKDPTMTLHRPKTVVVSDADNLAALQKQAKKQLADWRLEGFTLTITVGGHKTRDGVLWQPGQRVHVIDDEHGIDAVFFLMGRRFMLSRMDGTQTELRLKEDGIWTPDAYPKKAEAARKRKGKRKGVSHKGKKGGRKQTETAVFE
>LR134533.1|VEJ49332.1|153055_153343_-|CRISPR-associated-endoribonuclease-Cas2
MLITYDISLEGADGQARLRRIAKHCLDYGVRVQYSVFECDVTPDQWVKLKAKLLDTYQPETDSLRFYHLGSKWRRKVEHHGAKAAVDVFQDTLIV
>LR134533.1|VEJ49334.1|153427_154441_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG
MRKLQNTLYITTQGSYLHKERETLVVEQERKKVAQLPVHAIGHIFCFGNVLVSPFLMGFCGENNVNLAFFTENGRFLGRLQGRQSGNVLLRRAQYRQSEQNPVPIARHIIAAKIQSAKRVLQRRLRNHGEHAEVLAAVTALNFSLQQLKRAECLDKVRGIEGDAAARYFGVFRHLLRENSGFAFDGRNRRPPRDGVNALLSFVYSILGKDISGALQGVGLDPQVGFLHADRPGRDSLAQDILEEFRAWWADRLVLSLINRGQIKPQDFVAEAGGAVNIKPEARKLLFQTLQAKKQEKIVHPFLQEEVAVGLLPHIQAMLLARHLRGDLAEYPPFLMR
>LR134533.1|VEJ49336.1|154616_155408_-|Uncharacterised-protein
MNKKPINLWLEKLSLWGIVALLVMSIIVPLLFQENNMWTSLSSNIGIALFSALSISKFLQKETKDFIFNEIPLLQKANEVGIASILENGSIESLDFKESKVFIIAMNDGKFFITQNAENLCNRFEKEGMTTTFILLDGESDAAKLLCHANGKDDINSYKNKIDQAVKEIKNFSDRYSKHNFEIYMYSKGYFRSSIILTDSKALVGLYRNSPGKGKIPLHILISKSGSEFDAIKNDVMQLKSLSRPVQVVETINIAQQNADILS
>LR134533.1|VEJ49338.1|155444_156053_-|recombinase-B
MISIPLSALQHYAFCPRQCALIHNEQVWAENYLTAQGSALHERVDGGEPETRKGVRFERSVHVSAEKLGVHGVLDMVERDIQTGRLKPVEYKRGKPKPEPFDEIQLCAQALCLEEMTGQTVAEGALWYMQTRHRVPVVFSDGLRAETLDVIRNVRELLDSGTTPPPEYGKRCKACSLIEVCQPKLVEKDRSVGYVAGLFRVE
>LR134533.1|VEJ49340.1|156161_157025_-|phage-associated-protein
MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPESSKGLVTDVCLKRKIRNFVELANENQAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKDEAKARDITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSVDPIVPLEVSITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFVSANLAAKTGFSDEDLQQLWNALRLMFEHDRSAARGEMAARKLIVFKHDSALGNEPAHKLFEAVKVERIHGESGTPAAAFSDYRISVHSDGLKGVTVEELL
>LR134533.1|VEJ49342.1|157043_158927_-|phage-associated-protein
MILTSLARYYRRLATENDVAGNPKVPPYGFSEEKIGWVLVLDSDGLLVDVVPHLTGDKKPQPRLMSVPRPEKRTSGVKPNFLWDKTAYALGVEANKDKATAKEQPFVPSEKTFAAFRELHLEALKDTQDEGLLALRRFLERWQPEQFAHPPCLPDMLDANVVFRLDGTRGYIHQREAAQALWAGRLKNDEAEQGLCLVSGEQAPIARLHPAIKGVFGGQSSGGSIISFNKESFTSFGKEQGANAPVSEVSAFAYTTALNYLLRRENGHCLTIGDASTVFWAEAATPEQAEAAEGFFAAAMTPPDDEQENQKIFDVLAQVVKGRPLREIDPNLDDQTRFYILGLAPNASRISIRFWLDTTFGKLAENIKKHRDDLSINPPVWGAKPPSVWRILLETTPKRKGADGRLKKSESKDIPPQLAGEYMRAILTGRHYPQTMLSRMIGRIRSDGFISGLRVAVIKSVLKRNNLCKEEFDMGLNEETQDIPYRLGRLFAIIELAQSSALGELNAGVRDKFYGGASSSPHSTFPLLLDNYRTHISGLRKGKKAKWVTGDSKKLANWLENKVGEIVSVFDAETPFPRHLSLEEQGRFVIGYYQQRFKKYSKQEGGDVPEDIELANHLKTESDSEDE
>LR134533.1|VEJ49344.1|158923_159598_-|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG
MANKIRLHIWGDYACFTRPEMKVERVSYDVMTPSAARGILAAVHWKPAIRWVIDRIHVLKPIRFESVRRNELGSKISASKVSGAMRRKSVEDLYALIEDDRQQRAATVLKDVAYVIEAHAVLTARAGEGETIAKHIEMFKRRAAKGQCFQQPCMGVREFPAHFAWVDEDSLPKSALPENERDRDLGWMLHDIDFDGSNLPHFFRAEMKNGVVEVPPFFAEEVKK
>LR134533.1|VEJ49346.1|159706_162400_-|putative-type-III-restriction-enzyme
MTTRIQHHINGRLSLRAPQAHSLAKLKQALDAAPQILKHERDVAAVLEILKGEFATLQEFEREFPSLCFALATGVGKTRLMGAFIAYLHLAHGINNFFVLAPNLTIYNKLIADFSPNTPKYVFKGISEFALHPPRVITGEDYERQDIASGDWITEVRINIFNIAKINSEVRGGKEPRIKRMREVLGDSYFNYLANLPDLVLLMDESHRYRAQAGMRAINELKPLLGLELTATPFVETGKAPQPFKNVIVDYPLARALEDGFVKVPAVVTQRNFNAKDHTPEEIEKIKLEDGVRVHENTKVELLTYARENGVKPIKPFMLVIARDTTHAAALLALIESEAFYSGRYAGKVIQVDSSKSGKDEEEMIARLLAVESVDEPTEIVIHVNMLKEGWDVTNLYTIVPLRAANARTLIEQSIGRGLRLPYGKRTGVEAVDRLNIIAHDRFQEIIDEANQGDSVLRLQQVILEAPSQDDEKVSVRVASTMEVHLGLADGPSEFIPAQESQSYQSVFTNENEKRIARVVMEVAAQYGRRPDDAPTSQALLQSDIQAQITAEVQKRLQPAQGELPMENTPDVANIVAKTTKVMVDNNIDIPRITVVPSGEVSTGFHPFTLDASGLRLQPSEREITIHNLHTNEQTSLAREMGLTEKRPEDYIVHALIDFDDIDYFTQSELLYDLAGQMVAYLHSYLSGEEALNVLDKERCLIAREIHAQMAAHFWEKAAGYEARVSQGFSPLKPCAYTVVAGEPVHAVRDTVADKTRIKHMLFGHFKKCLYPLQKFDSDTERRFAVILERDAQKWFKPAKGQFQIDYKLGMEQKEYLPDFVVETEDCILMAETKARADLNTPEVQAKAQAASTWCQHASDYASQHGTKAWRYLLIPHDEVSEAKKLADFLRFEKQAV
>LR134533.1|VEJ49348.1|162547_163624_-|DNA-binding-protein
MTQDVQVSQGEFLLYQTEDAQTRIQVRFVEGGLWLSQAQMAELFQVSVRTISEHLGNIFDEDEVDPERTIRKFRIVQIEGSRQVRRLIDHYHLDAVLAVGYRVRSHRGMQFRRWATEQLGHYLEKGFLLDSERFKAGKDEAYFEALLAQIRDIRSSEKVFWRKVLDIYATSIDYDPNTETSRQFFATLQNKMHWAAHGHTAAELIMLRADAEAPYMGLTNWDGQGKGKPVRKADVGIAKNYLNAEELEVLNRIVTAYIEVAELQAQARQPMYMTDWANELDNFLRLTRKEVLTHAGKVSADAALARAQAVYEQYRAQQSRLPSRAEQDFERAIVEPVKQLERTRKQVLPKNKGKKNET
>LR134533.1|VEJ49350.1|163620_165321_-|putative-type-III-DNA-modification-methylase
MKNQKLELTWIGKHKRPKLEARILLEEADKSYHAKVRSEKDVFDNRLIFGDNLLALKALEQEFTGKVKCVFIDPPYNTGSAFTHYDDGLEHSIWLGLMRDRLEIIKRLLSDDGSLWITIDDNEAHYLKVLCDEIFGRGNFVANVVWQKKYAATNDSKQFSSVHDHLLVYAKLSDNWRPNLVPRSEELNSKYVNWDNDPRGPWYPTNLSVKTYSAANDYEIISPAGLSFRPPPTRSWVVSKQKYEELLADGRITFGKKGDSRPYKKTFLSEVQQGVVPITIWEHEFAGHNIGAKSEMRAMFGNRNDLFDTPKPELLLSRVMHIATNPGDLVLDSFAGSGTTGAVAHKMGRRWIMVELGEHCHTHIIPRLQKVIDGTDQGGISKAVNWQGGGGFRYYRLAPTLIINDRWGNPIINPDYNPEMLAEALAKLEGFTYRPSETHWWQHGYSSECDFIYVTTQSLSAEQLQALSDEVGEGCSLLICCSAWRGLTATQAAERFPNLTLKKIPKMILARCEWGHDDYSLNVANLPFAEAEPLPEKTDDQKLPVKAKKGKRLPEEQEGLFDGEEQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LR134533_1	1.3\|148853\|35\|LR134533\|PILER-CR,CRISPRCasFinder,CRT	148853-148887	35	LR134533.1	2127248-2127282	0	1.0

1. spacer 1.3|148853|35|LR134533|PILER-CR,CRISPRCasFinder,CRT matches to position: 2127248-2127282, mismatch: 0, identity: 1.0

taaattgtctcgggttgtatcgggaaattggatgg	CRISPR spacer
taaattgtctcgggttgtatcgggaaattggatgg	Protospacer
***********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR134533_1	1.28\|150522\|35\|LR134533\|PILER-CR,CRISPRCasFinder,CRT	150522-150556	35	AJ783769	Sulfolobus tengchongensis spindle-shaped virus STSV1 complete genome	24148-24182	7	0.8
LR134533_1	1.39\|151263\|35\|LR134533\|PILER-CR,CRISPRCasFinder,CRT	151263-151297	35	MN693250	Marine virus AFVG_25M507, complete genome	11792-11826	8	0.771
LR134533_1	1.45\|151663\|34\|LR134533\|PILER-CR,CRISPRCasFinder,CRT	151663-151696	34	NC_006842	Aliivibrio fischeri ES114 plasmid pES100, complete sequence	28258-28291	9	0.735
LR134533_1	1.45\|151663\|34\|LR134533\|PILER-CR,CRISPRCasFinder,CRT	151663-151696	34	NC_016853	Aliivibrio fischeri strain ES657 plasmid pES657-44, complete sequence	32431-32464	9	0.735
LR134533_1	1.38\|151198\|33\|LR134533\|PILER-CR,CRISPRCasFinder,CRT	151198-151230	33	KY065499	Streptococcus phage IPP63, complete genome	2975-3007	10	0.697
LR134533_1	1.57\|152468\|35\|LR134533\|PILER-CR,CRISPRCasFinder,CRT	152468-152502	35	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	274790-274824	10	0.714

1. spacer 1.28|150522|35|LR134533|PILER-CR,CRISPRCasFinder,CRT matches to AJ783769 (Sulfolobus tengchongensis spindle-shaped virus STSV1 complete genome) position: , mismatch: 7, identity: 0.8

tcgttctgcttattcttttgttttacgtcaacaaa-	CRISPR spacer
tcgttctgcttcttcttttattttat-cgaacaagg	Protospacer
*********** *******.*****. . *****.

2. spacer 1.39|151263|35|LR134533|PILER-CR,CRISPRCasFinder,CRT matches to MN693250 (Marine virus AFVG_25M507, complete genome) position: , mismatch: 8, identity: 0.771

aagctcttttgtttcagcttctgttaactcaacac	CRISPR spacer
accaacttttgtttcagcatctgctaactcaaaaa	Protospacer
*    ************* ****.******** *

3. spacer 1.45|151663|34|LR134533|PILER-CR,CRISPRCasFinder,CRT matches to NC_006842 (Aliivibrio fischeri ES114 plasmid pES100, complete sequence) position: , mismatch: 9, identity: 0.735

ggcaaacaaagtcagaaaatgcgtcatcggaatg	CRISPR spacer
ttccgacaaagtcagaaaaagcgtcatcgttaac	Protospacer
  * .************** *********  *

4. spacer 1.45|151663|34|LR134533|PILER-CR,CRISPRCasFinder,CRT matches to NC_016853 (Aliivibrio fischeri strain ES657 plasmid pES657-44, complete sequence) position: , mismatch: 9, identity: 0.735

ggcaaacaaagtcagaaaatgcgtcatcggaatg	CRISPR spacer
ttccgacaaagtcagaaaaagcgtcatcgttaac	Protospacer
  * .************** *********  *

5. spacer 1.38|151198|33|LR134533|PILER-CR,CRISPRCasFinder,CRT matches to KY065499 (Streptococcus phage IPP63, complete genome) position: , mismatch: 10, identity: 0.697

cctgttgacgatatacgttttcaaaaaatgctg	CRISPR spacer
ggagttgatgatatatgttttcaaaaagggtat	Protospacer
   *****.******.***********. *.

6. spacer 1.57|152468|35|LR134533|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 10, identity: 0.714

ccctgttg-------ataaccccgaatccgataaaggaaaca	CRISPR spacer
-------ggagtggtataacaccgaatcagataaaggaaacc	Protospacer
       *       ***** ******* ************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

96905 : 148542

Mannheimia_phage(33.33%)

head,plate,tRNA,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ49216.1\|96905_98150_+\|tRNA	tRNA nucleotidyltransferase	M4M8W7	Vibrio_phage	4.1e-70	40.1
VEJ49218.1\|98361_99414_-	Inner membrane ABC transporter permease protein yejB	NA	NA	NA	NA
VEJ49220.1\|99526_99733_-	Protein of uncharacterised function (DUF2788)	NA	NA	NA	NA
VEJ49222.1\|99791_100967_-	putative O-succinylhomoserine sulfhydrolase	NA	NA	NA	NA
VEJ49224.1\|101264_102230_+	Inner membrane protein yrbG	NA	NA	NA	NA
VEJ49226.1\|102570_102894_-	putative secreted protein	NA	NA	NA	NA
VEJ49228.1\|102927_103173_-	Uncharacterised protein	NA	NA	NA	NA
VEJ49230.1\|103415_104435_-	Inner membrane ABC transporter permease protein yejE	NA	NA	NA	NA
VEJ49232.1\|104577_105072_-	Probable thiol peroxidase	NA	NA	NA	NA
VEJ49234.1\|105104_105719_-	Uncharacterised protein	NA	NA	NA	NA
VEJ49236.1\|105798_106785_-	L-asparaginase	NA	NA	NA	NA
VEJ49238.1\|106841_107810_-	agmatinase	NA	NA	NA	NA
VEJ49240.1\|108017_108710_-	DedA-family integral membrane protein	NA	NA	NA	NA
VEJ49242.1\|108798_110133_-	phosphoglucosamine mutase	NA	NA	NA	NA
VEJ49244.1\|110303_111155_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	2.1e-20	29.2
VEJ49246.1\|111259_113290_-	cell division protein FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	1.9e-112	47.4
VEJ49248.1\|113345_113966_-	putative cell division protein	NA	NA	NA	NA
VEJ49250.1\|114073_114355_+	putative RNA-binding protein	NA	NA	NA	NA
VEJ49252.1\|114573_115761_+	acetylornithine/succinyldiaminopimelate aminotransferase (ACOAT; succinyldiaminopimelate transferase; DapATase)	A0A1V0SKB7	Klosneuvirus	2.3e-30	29.9
VEJ49254.1\|115876_116560_+	NAD-dependent deacetylase	A0A2I7QWN6	Vibrio_phage	8.2e-28	37.2
VEJ49256.1\|116702_117221_-	Uncharacterised protein	NA	NA	NA	NA
VEJ49258.1\|117254_118394_-	glycerate kinase	W6LM47	Streptococcus_phage	6.9e-48	42.1
VEJ49261.1\|118403_119666_-	gluconate permease	NA	NA	NA	NA
VEJ49263.1\|119744_120332_-	Glucan endo-1,3-beta-glucosidase precursor	NA	NA	NA	NA
VEJ49265.1\|120423_120642_-	Uncharacterised protein	NA	NA	NA	NA
VEJ49266.1\|120682_121630_-	putative methyltransferase	NA	NA	NA	NA
VEJ49267.1\|121965_123321_+	ATP-dependent RNA helicase	A0A0N9Q9J4	Chrysochromulina_ericina_virus	7.2e-52	31.4
VEJ49268.1\|123427_125947_-	Pectate lyase superfamily protein	NA	NA	NA	NA
VEJ49269.1\|126665_128204_+	Ornithine/acetylornithine aminotransferase	A0A248XCZ8	Klebsiella_phage	1.7e-81	45.3
VEJ49271.1\|128591_128876_+\|head	putative phage head morphogenesis protein	A0A0M3LSH7	Mannheimia_phage	2.1e-09	39.8
VEJ49273.1\|128978_129395_+\|tail	putative phage tail completion protein	B7SDN8	Haemophilus_phage	9.3e-35	53.6
VEJ49275.1\|129592_130651_+	protein gp32	A0A2D1GNS3	Pseudomonas_phage	3.9e-61	41.0
VEJ49277.1\|130653_130845_+	Uncharacterised protein	NA	NA	NA	NA
VEJ49279.1\|130813_131563_+\|head	putative GpT-like prophage major head subunit protein	A0A0M3LQ11	Mannheimia_phage	2.1e-77	57.7
VEJ49282.1\|131629_132010_+	Uncharacterised protein	NA	NA	NA	NA
VEJ49284.1\|132013_132442_+	phage protein	A0A1B0T6F3	Thiobacimonas_phage	1.3e-07	37.9
VEJ49286.1\|132425_133076_+	putative Gp37-like prophage protein	B7SDP5	Haemophilus_phage	6.8e-32	37.0
VEJ49288.1\|133072_133270_+	Uncharacterised protein	NA	NA	NA	NA
VEJ49290.1\|133272_134682_+\|tail	Bacteriophage Mu tail sheath protein	B7SDP8	Haemophilus_phage	1.0e-125	54.3
VEJ49292.1\|134746_135124_+	Uncharacterised protein	A0A0M3LRV6	Mannheimia_phage	5.7e-31	52.5
VEJ49294.1\|135130_135559_+	Uncharacterised protein	NA	NA	NA	NA
VEJ49296.1\|135558_135714_+	Uncharacterised protein	NA	NA	NA	NA
VEJ49298.1\|135771_136359_+	putative lipoprotein	NA	NA	NA	NA
VEJ49300.1\|136451_138548_+\|tail	Phage-related minor tail protein	A0A0M3LPB6	Mannheimia_phage	2.3e-25	26.5
VEJ49302.1\|138544_139876_+	putative phage virion protein	A0A0M3LQ21	Mannheimia_phage	1.8e-63	35.4
VEJ49304.1\|139865_141011_+\|tail	putative phage tail protein	F6MIL3	Haemophilus_phage	4.1e-117	58.8
VEJ49306.1\|141007_141676_+\|plate	putative baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	8.7e-59	52.1
VEJ49308.1\|141777_142125_+	Phage protein GP46	A0A0M3LQK5	Mannheimia_phage	5.6e-33	62.1
VEJ49310.1\|142138_143194_+\|plate	baseplate J-like protein	A0A0M3LQN4	Mannheimia_phage	8.5e-101	56.1
VEJ49312.1\|143190_143754_+	phage protein	A0A0M3LQE1	Mannheimia_phage	2.0e-24	38.1
VEJ49314.1\|143757_145056_+\|tail	putative phage tail fiber protein	A0A0R8UEH9	Sinorhizobium_phage	4.1e-20	36.9
VEJ49316.1\|145068_145806_+	putative phage fiber-spike protein	K7PMH7	Enterobacteria_phage	4.2e-06	25.8
VEJ49318.1\|145807_146080_+	Uncharacterised protein	D0UIH0	Aggregatibacter_phage	1.9e-12	44.6
VEJ49320.1\|146082_147378_+	Uncharacterised protein	NA	NA	NA	NA
VEJ49322.1\|147705_148542_+	putative N-6adenine-specific DNA methylase	F6MIM2	Haemophilus_phage	6.6e-80	52.8

DBSCAN-SWA_2

373217 : 381506

Serratia_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ49774.1\|373217_373973_-	ADP-ribosyl-[dinitrogen reductase] hydrolase	A0A1S6UB21	Serratia_phage	7.2e-09	24.8
VEJ49776.1\|374184_374490_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	5.3e-11	38.5
VEJ49778.1\|374563_376924_-\|tRNA	phenylalanyl-tRNA synthetase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.6e-06	28.7
VEJ49780.1\|377071_378061_-\|tRNA	phenylalanyl-tRNA synthetase subunit alpha	A0A2I2L4E3	Orpheovirus	3.3e-30	35.2
VEJ49782.1\|378347_378704_-	50S ribosomal protein L20	NA	NA	NA	NA
VEJ49784.1\|378716_378914_-	putative 50S ribosomal protein L35	NA	NA	NA	NA
VEJ49786.1\|379053_379458_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.2e-08	35.1
VEJ49788.1\|379592_381506_-\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	3.4e-124	37.1

DBSCAN-SWA_3

481723 : 520197

Burkholderia_phage(33.33%)

plate,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ49965.1\|481723_482497_-	putative phage associated type II DNA-methyltransferase	Q5ZQW7	Pseudomonas_phage	3.9e-79	55.0
VEJ49967.1\|482823_483249_-	Uncharacterised protein	A0A1L7N100	Ralstonia_phage	1.7e-28	43.1
VEJ49969.1\|483316_484087_-	putative phage fiber-spike protein	NA	NA	NA	NA
VEJ49971.1\|484146_485706_-\|tail	putative phage tail fiber protein	A0A077K818	Ralstonia_phage	1.1e-27	43.6
VEJ49973.1\|485705_486284_-\|tail	putative phage tail protein	Q6QI98	Burkholderia_phage	6.6e-47	49.2
VEJ49976.1\|486276_487419_-\|plate	phage baseplate-like protein	A0A0C5AEG2	Bacteriophage	3.8e-38	32.7
VEJ49978.1\|487409_487787_-\|plate	phage baseplate-like protein	NA	NA	NA	NA
VEJ49980.1\|487877_488174_-	Uncharacterised protein	NA	NA	NA	NA
VEJ49982.1\|488189_488450_-	Uncharacterised protein	NA	NA	NA	NA
VEJ49984.1\|488520_489123_-\|plate	putative phage-related baseplate assembly protein	Q6QIA1	Burkholderia_phage	1.1e-17	42.0
VEJ49986.1\|489103_490195_-	phage-like protein	Q6QIA2	Burkholderia_phage	2.3e-72	47.2
VEJ49988.1\|490196_490415_-\|tail	phage tail protein	Q6QIA3	Burkholderia_phage	1.2e-09	39.7
VEJ49990.1\|490411_491308_-\|tail	putative phage tail assembly protein	Q6QIA4	Burkholderia_phage	2.0e-21	38.8
VEJ49992.1\|491307_493974_-\|tail	putative phage-related tail protein	E9P5Y8	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	1.1e-83	37.5
VEJ49994.1\|494010_494226_+	Uncharacterised protein	NA	NA	NA	NA
VEJ49996.1\|494389_494695_-	phage protein	Q6QIA8	Burkholderia_phage	3.8e-09	44.2
VEJ49998.1\|494835_495354_-	phage-like protein	NA	NA	NA	NA
VEJ50000.1\|495364_496762_-\|tail	bacteriophage tail sheath protein	A4JWK5	Burkholderia_virus	3.1e-106	46.4
VEJ50002.1\|496766_497267_-	putative phage associated protein	Q6QIB2	Burkholderia_phage	4.3e-18	31.6
VEJ50004.1\|497266_497716_-	phage protein	NA	NA	NA	NA
VEJ50006.1\|497715_498015_-	phage protein	NA	NA	NA	NA
VEJ50008.1\|498017_498353_-	phage protein	NA	NA	NA	NA
VEJ50011.1\|498345_498621_-	phage protein	C3VVT2	Vibrio_phage	1.4e-10	39.5
VEJ50013.1\|498704_499643_-	phage associated protein	A4JWK0	Burkholderia_virus	2.8e-47	38.8
VEJ50015.1\|499665_500778_-	putative phage associated protein	Q6QIB7	Burkholderia_phage	2.9e-67	43.0
VEJ50017.1\|501008_501356_-	putative bacteriophage transcriptional regulator	A4JWM4	Burkholderia_virus	7.1e-20	45.9
VEJ50019.1\|501355_501826_-	phage associated protein	A0A0C4UQU3	Shigella_phage	4.0e-10	32.9
VEJ50021.1\|501899_502172_-	DNA-binding protein Hu	B5TA87	Burkholderia_phage	2.8e-16	51.1
VEJ50023.1\|502233_502404_-	Uncharacterised protein	NA	NA	NA	NA
VEJ50025.1\|502406_503015_-	Protein of uncharacterised function (DUF3164)	A0A0M3LQ92	Mannheimia_phage	8.2e-56	51.0
VEJ50027.1\|503004_503460_-	Uncharacterised protein	NA	NA	NA	NA
VEJ50029.1\|503443_503938_-	Uncharacterised protein	A0A2H4JFV8	uncultured_Caudovirales_phage	7.7e-28	44.1
VEJ50031.1\|503939_504155_-	Uncharacterised protein	NA	NA	NA	NA
VEJ50033.1\|504142_504328_-	Uncharacterised protein	NA	NA	NA	NA
VEJ50035.1\|504324_504576_-	Uncharacterised protein	NA	NA	NA	NA
VEJ50037.1\|504577_505717_-	ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components	A4JWN1	Burkholderia_virus	8.6e-99	53.0
VEJ50039.1\|505716_507495_-	putative phage associated protein	Q6QIE0	Burkholderia_phage	1.9e-140	46.3
VEJ50041.1\|507497_508367_-	phage protein	A4JWN3	Burkholderia_virus	1.2e-44	40.0
VEJ50043.1\|508446_508734_-	putative DNA-binding phage protein	NA	NA	NA	NA
VEJ50045.1\|508720_508954_-	putative phage associated protein	NA	NA	NA	NA
VEJ50047.1\|509125_509776_+	transcriptional regulator	A0A2I7S9A5	Vibrio_phage	5.2e-40	43.0
VEJ50049.1\|509900_510695_+	Uncharacterised protein	NA	NA	NA	NA
VEJ50051.1\|510752_511775_+	Uncharacterised protein	A0A0R6PIZ6	Moraxella_phage	2.8e-32	29.3
VEJ50053.1\|511860_512361_+	Predicted lysozyme (DUF847)	A0A0M3LSH2	Mannheimia_phage	5.9e-52	59.5
VEJ50055.1\|512364_512541_+	Uncharacterised protein	NA	NA	NA	NA
VEJ50057.1\|512537_512789_+	phage protein	NA	NA	NA	NA
VEJ50059.1\|512775_513186_+	phage associated protein	NA	NA	NA	NA
VEJ50061.1\|513202_513388_+	phage associated protein	NA	NA	NA	NA
VEJ50063.1\|513384_513597_+	phage associated protein	Q9MC51	Pseudomonas_phage	2.0e-09	50.0
VEJ50065.1\|513600_513924_+	Uncharacterised protein	Q6QIC4	Burkholderia_phage	3.6e-10	36.5
VEJ50067.1\|513920_514238_+	Uncharacterised protein	A0A2H4JGU5	uncultured_Caudovirales_phage	3.2e-27	61.9
VEJ50069.1\|514239_514785_+	Protein of uncharacterised function (DUF3486)	A4JWJ3	Burkholderia_virus	2.4e-38	48.6
VEJ50071.1\|514781_516284_+	phage-like protein	Q6QIC1	Burkholderia_phage	2.5e-199	67.8
VEJ50073.1\|516285_517782_+	phage protein	A4JWJ5	Burkholderia_virus	2.4e-112	46.1
VEJ50075.1\|517778_518684_+	phage-like protein	A0A0M4UTA3	Ralstonia_phage	9.4e-64	49.6
VEJ50077.1\|518686_518896_+	Uncharacterised protein	NA	NA	NA	NA
VEJ50079.1\|518888_519383_+	phage-like protein	A0A076FSU1	Pseudomonas_phage	7.7e-20	40.6
VEJ50081.1\|519573_520197_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	6.5e-56	55.8

DBSCAN-SWA_4

560511 : 567726

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ50167.1\|560511_561525_-	UDP-glucose 4-epimerase (galactowaldenase; UDP-galactose 4-epimerase)	A0A2K9L5H6	Tupanvirus	4.4e-86	48.0
VEJ50169.1\|561576_562122_-	dTDP-6-deoxy-L-mannose-dehydrogenase	I7HJC4	Enterobacteria_phage	5.3e-46	50.6
VEJ50171.1\|562143_563013_-	glucose-1-phosphate thymidylyltransferase	A0A291LA53	Escherichia_phage	6.0e-100	60.8
VEJ50173.1\|563009_564080_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.8e-98	51.3
VEJ50175.1\|564101_564893_-	LgtE	M1PHE5	Moumouvirus	4.4e-09	29.4
VEJ50177.1\|564911_565832_-	lipooligosaccharyl-alpha-1, 4-galactosyltransferase LgtC	NA	NA	NA	NA
VEJ50180.1\|565844_566861_-	LgtD	A0A1V0SAH6	Catovirus	1.3e-13	38.2
VEJ50182.1\|566892_567726_-	lacto-N-neotetraose biosynthesis glycosyl transferase LgtE	A0A1D8KNF8	Synechococcus_phage	5.7e-07	27.3

DBSCAN-SWA_5

687750 : 696656

Gordonia_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ50388.1\|687750_689106_-	exodeoxyribonuclease VII large subunit	A0A1B3AYB4	Gordonia_phage	4.0e-34	28.9
VEJ50390.1\|689454_691380_+	putative LipO-oligosaccharide acyltransferase	B5WZU0	Pseudomonas_phage	1.6e-92	48.1
VEJ50392.1\|691474_694183_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.4e-14	25.9
VEJ50394.1\|694325_694958_-	radical SAM domain-containing protein	A0A1V0DYC7	Dinoroseobacter_phage	1.4e-13	34.8
VEJ50396.1\|694962_695385_-	6-pyruvoyl tetrahydrobiopterin synthase	E7DN67	Pneumococcus_phage	5.2e-25	43.9
VEJ50398.1\|695444_695945_-	Domain of Uncharacterised Function (DUF1543)	NA	NA	NA	NA
VEJ50400.1\|695999_696656_-	YbaX	A0A2H4J8Q7	uncultured_Caudovirales_phage	5.9e-60	54.2

DBSCAN-SWA_6

2148645 : 2160606

Colwellia_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEJ52120.1\|2148645_2150925_+	ribonucleotide-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.9e-286	64.3
VEJ52121.1\|2151060_2151228_+	Uncharacterised protein	NA	NA	NA	NA
VEJ52122.1\|2151260_2152415_+	ribonucleotide-diphosphate reductase subunit beta	W6AT53	Erwinia_phage	2.7e-164	75.1
VEJ52123.1\|2152549_2152846_+	iron-sulfur binding protein	G9IAA2	Pseudomonas_phage	1.9e-13	49.4
VEJ52124.1\|2152865_2153318_+	META domain	NA	NA	NA	NA
VEJ52125.1\|2153424_2155407_-	DNA mismatch repair protein	A0A1B2LRQ5	Wolbachia_phage	4.0e-83	31.7
VEJ52126.1\|2155558_2156128_+	Uncharacterised protein	NA	NA	NA	NA
VEJ52127.1\|2156183_2156576_-	putative CrcB-like protein	A0A2H4J148	uncultured_Caudovirales_phage	5.0e-14	46.5
VEJ52128.1\|2156633_2157317_-	integral membrane protein	NA	NA	NA	NA
VEJ52129.1\|2157486_2160606_+	cell-division protein	G1FGP1	Mycobacterium_phage	2.8e-83	48.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage