CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR136959	Alteromonas sp. 76-1 genome assembly, plasmid: pAlt76	0 crisprs	NA	0	0	0	0
LR136958	Alteromonas sp. 76-1 genome assembly, chromosome: cAlt76	0 crisprs	DEDDh,DinG,WYL,cas3,RT,csa3	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

770671 : 780584

uncultured_Caudovirales_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEL95712.1\|770671_772291_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.4e-38	39.2
VEL95713.1\|772542_774369_-	RNA polymerase RpoD-like sigma 70 subunit	A0A2I7SAT0	Vibrio_phage	1.3e-35	33.0
VEL95714.1\|774693_776475_-	DNA primase	A0A1S5RF71	Helicobacter_phage	4.6e-46	32.7
VEL95715.1\|776616_777063_-	hypothetical protein	A0A292GL36	Xanthomonas_phage	1.1e-22	41.1
VEL95716.1\|777402_777618_-	SSU ribosomal protein S21P	NA	NA	NA	NA
VEL95717.1\|778154_779168_+	O-sialoglycoprotein endopeptidase	A0A0R6PI74	Moraxella_phage	6.9e-108	56.6
VEL95718.1\|779237_780584_+	predicted AlkP superfamily pyrophosphatase or phosphodiesterase	A0A0M3PB47	Turkeypox_virus	2.1e-43	31.4

DBSCAN-SWA_2

1017878 : 1026729

Streptococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEL95908.1\|1017878_1019171_-	enolase	A0A1X9I5Z8	Streptococcus_phage	9.4e-134	59.5
VEL95909.1\|1019230_1020862_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.2e-148	50.6
VEL95910.1\|1021040_1023647_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.7e-31	22.4
VEL95911.1\|1023922_1024411_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.2e-28	47.4
VEL95912.1\|1024673_1025714_+	recombination protein RecA	A0A2D1GPX2	Mycobacterium_phage	1.8e-119	64.1
VEL95913.1\|1025928_1026729_+	sodium transport system ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-25	32.1

DBSCAN-SWA_3

2150810 : 2191571

Synechococcus_phage(25.0%)

protease,transposase,integrase

attL 2175239:2175267|attR 2186968:2186996

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEL96866.1\|2150810_2152253_-\|protease	predicted Zn-dependent protease	NA	NA	NA	NA
VEL96867.1\|2152559_2153636_+	putative permease	NA	NA	NA	NA
VEL96868.1\|2153771_2154242_-	peroxiredoxin Q/BCP	NA	NA	NA	NA
VEL96869.1\|2154219_2154783_-	glycine cleavage system transcriptional repressor	NA	NA	NA	NA
VEL96870.1\|2154963_2155848_+	dihydrodipicolinate synthase	NA	NA	NA	NA
VEL96871.1\|2155860_2156964_+	Beta-barrel assembly machine subunit BamC	NA	NA	NA	NA
VEL96872.1\|2156976_2157690_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3FGF0	Synechococcus_phage	3.1e-38	37.0
VEL96873.1\|2157951_2158821_+	threonine/homoserine efflux transporter RhtA	NA	NA	NA	NA
VEL96874.1\|2159095_2159419_+	hypothetical protein	NA	NA	NA	NA
VEL96875.1\|2159648_2161859_-	iron complex outermembrane receptor protein	NA	NA	NA	NA
VEL96876.1\|2161848_2163189_-	ABC-2 type transport system permease protein	NA	NA	NA	NA
VEL96877.1\|2163185_2164631_-	ABC-2 type transport system permease protein	NA	NA	NA	NA
VEL96878.1\|2164627_2165347_-	ABC-2 type transport system ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	9.8e-16	30.8
VEL96879.1\|2165637_2166807_+	glutathione S-transferase	NA	NA	NA	NA
VEL96880.1\|2167049_2167790_+	hypothetical protein	NA	NA	NA	NA
VEL96881.1\|2168212_2168794_-\|transposase	transposase IS116/IS110/IS902 family protein	NA	NA	NA	NA
VEL96882.1\|2168803_2169367_-\|transposase	transposase	NA	NA	NA	NA
VEL96883.1\|2169484_2170177_+	hypothetical protein	NA	NA	NA	NA
VEL96884.1\|2170286_2170892_+	hypothetical protein	NA	NA	NA	NA
VEL96885.1\|2171005_2171170_+	hypothetical protein	NA	NA	NA	NA
VEL96886.1\|2171281_2171473_+	hypothetical protein	NA	NA	NA	NA
VEL96887.1\|2171584_2172148_+	hypothetical protein	NA	NA	NA	NA
VEL96888.1\|2172273_2173554_+	hypothetical protein	NA	NA	NA	NA
VEL96889.1\|2173670_2173937_+	hypothetical protein	NA	NA	NA	NA
VEL96890.1\|2174416_2174734_-	hypothetical protein	NA	NA	NA	NA
VEL96891.1\|2174779_2175154_-	hypothetical protein	NA	NA	NA	NA
2175239:2175267	attL	NA	NA	NA	NA
VEL96892.1\|2175652_2175940_+	hypothetical protein	NA	NA	NA	NA
VEL96893.1\|2176038_2177100_+	uncharacterized protein DUF4263	NA	NA	NA	NA
VEL96894.1\|2177508_2177697_+\|integrase	integrase-like protein	NA	NA	NA	NA
VEL96895.1\|2177758_2178808_+	uncharacterized protein DUF4365	NA	NA	NA	NA
VEL96896.1\|2178929_2179727_+	hypothetical protein	NA	NA	NA	NA
VEL96897.1\|2179716_2179812_+	hypothetical protein	NA	NA	NA	NA
VEL96898.1\|2179848_2180715_+	hypothetical protein	NA	NA	NA	NA
VEL96899.1\|2181357_2181849_+	hypothetical protein	NA	NA	NA	NA
VEL96900.1\|2181894_2182671_+	methyltransferase family protein	NA	NA	NA	NA
VEL96901.1\|2183112_2183574_+	hypothetical protein	NA	NA	NA	NA
VEL96902.1\|2183961_2184516_+	acetyltransferase (GNAT) family protein	NA	NA	NA	NA
VEL96903.1\|2184595_2184895_+	hypothetical protein	NA	NA	NA	NA
VEL96904.1\|2184967_2185285_+	hypothetical protein	NA	NA	NA	NA
VEL96905.1\|2185385_2185757_+	MerR family transcriptional regulator	NA	NA	NA	NA
VEL96906.1\|2185829_2186822_+	dihydroflavonol-4-reductase	A0A218MKD6	uncultured_virus	1.8e-07	26.5
VEL96907.1\|2187695_2188565_+	hypothetical protein	NA	NA	NA	NA
2186968:2186996	attR	NA	NA	NA	NA
VEL96908.1\|2188674_2189214_+	hypothetical protein	NA	NA	NA	NA
VEL96909.1\|2189338_2189650_+	hypothetical protein	NA	NA	NA	NA
VEL96910.1\|2189779_2190283_+	hypothetical protein	NA	NA	NA	NA
VEL96911.1\|2190378_2190738_+\|transposase	transposase	NA	NA	NA	NA
VEL96912.1\|2190689_2191571_+\|transposase	transposase InsO family protein	A0A0P0I4A4	Acinetobacter_phage	8.6e-38	32.5

DBSCAN-SWA_4

2221061 : 2264766

uncultured_Caudovirales_phage(28.57%)

terminase,capsid,tRNA,protease,tail,holin,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEL96939.1\|2221061_2223755_+	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	7.3e-88	51.2
VEL96940.1\|2223760_2224516_+	outer membrane lipoprotein carrier protein	NA	NA	NA	NA
VEL96941.1\|2224526_2225885_+	recombination protein MgsA	G3MBE0	Bacillus_virus	4.4e-73	37.6
VEL96942.1\|2225998_2226274_+	camphor resistance protein CrcB	A0A2H4J148	uncultured_Caudovirales_phage	5.1e-05	33.7
VEL96943.1\|2226284_2227577_+\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.0e-95	45.2
VEL96944.1\|2227772_2228591_-	hypothetical protein	NA	NA	NA	NA
VEL96945.1\|2228663_2229011_-\|tRNA	tRNA 2-thiouridine synthesizing protein E	NA	NA	NA	NA
VEL96946.1\|2229066_2229450_-	sulfur transfer complex TusBCD TusB component (DsrH family)	NA	NA	NA	NA
VEL96947.1\|2229449_2229812_-\|tRNA	tRNA 2-thiouridine synthesizing protein C	NA	NA	NA	NA
VEL96948.1\|2229811_2230201_-\|tRNA	tRNA 2-thiouridine synthesizing protein D	A0A2H4JA39	uncultured_Caudovirales_phage	3.0e-11	33.3
VEL96949.1\|2230327_2230993_-\|protease	modulator of FtsH protease	A0A2H4JFM9	uncultured_Caudovirales_phage	9.4e-37	47.5
VEL96950.1\|2231484_2231865_+	hypothetical protein	NA	NA	NA	NA
VEL96951.1\|2232306_2233773_+	uncharacterized protein DUF3360	NA	NA	NA	NA
VEL96952.1\|2234698_2236798_+	5-histidylcysteine sulfoxide synthase/putative 4-mercaptohistidine N1-methyltranferase	NA	NA	NA	NA
VEL96953.1\|2236849_2238325_+	cystathionine beta-lyase	NA	NA	NA	NA
VEL96954.1\|2238572_2239298_+	hypothetical protein	NA	NA	NA	NA
VEL96955.1\|2239503_2240148_+	LuxR family two component transcriptional regulator	NA	NA	NA	NA
VEL96956.1\|2240154_2241972_+	excinuclease ABC subunit C	NA	NA	NA	NA
VEL96957.1\|2242086_2242665_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
VEL96958.1\|2243305_2243659_-	hypothetical protein	NA	NA	NA	NA
VEL96959.1\|2243655_2244657_-	hypothetical protein	K7PLZ2	Enterobacterial_phage	2.7e-96	54.5
VEL96960.1\|2244659_2244869_-	uncharacterized protein DUF4224	NA	NA	NA	NA
VEL96961.1\|2244868_2245156_-	hypothetical protein	NA	NA	NA	NA
VEL96962.1\|2245157_2245847_-	uncharacterized protein DUF2786	NA	NA	NA	NA
VEL96963.1\|2245849_2246134_-	hypothetical protein	NA	NA	NA	NA
VEL96964.1\|2246133_2246331_-	hypothetical protein	NA	NA	NA	NA
VEL96965.1\|2246330_2246654_-	hypothetical protein	G4W935	Tetrasphaera_phage	4.7e-26	57.4
VEL96966.1\|2246650_2246992_-	hypothetical protein	NA	NA	NA	NA
VEL96967.1\|2246988_2247648_-	hypothetical protein	NA	NA	NA	NA
VEL96968.1\|2247647_2247854_-	helix-turn-helix protein	NA	NA	NA	NA
VEL96969.1\|2247856_2248036_-	hypothetical protein	NA	NA	NA	NA
VEL96970.1\|2248032_2248221_-	hypothetical protein	NA	NA	NA	NA
VEL96971.1\|2248237_2248444_-	hypothetical protein	NA	NA	NA	NA
VEL96972.1\|2248444_2249320_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.3e-35	53.1
VEL96973.1\|2249637_2249901_+	hypothetical protein	NA	NA	NA	NA
VEL96974.1\|2249910_2250462_+	hypothetical protein	NA	NA	NA	NA
VEL96975.1\|2250443_2250755_+	hypothetical protein	NA	NA	NA	NA
VEL96976.1\|2250714_2251170_-	hypothetical protein	NA	NA	NA	NA
VEL96977.1\|2251273_2251528_+	hypothetical protein	NA	NA	NA	NA
VEL96978.1\|2251524_2251815_+	hypothetical protein	NA	NA	NA	NA
VEL96979.1\|2251825_2252272_+	hypothetical protein	NA	NA	NA	NA
VEL96980.1\|2252479_2252731_+	hypothetical protein	NA	NA	NA	NA
VEL96981.1\|2252845_2253349_+	hypothetical protein	NA	NA	NA	NA
VEL96982.1\|2253329_2254160_+	hypothetical protein	NA	NA	NA	NA
VEL96983.1\|2254122_2254806_+	hypothetical protein	NA	NA	NA	NA
VEL96984.1\|2254807_2255158_+	hypothetical protein	NA	NA	NA	NA
VEL96985.1\|2255252_2255786_+	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	A0A2I7QLV3	Vibrio_phage	3.9e-25	44.5
VEL96986.1\|2255782_2256313_+	hypothetical protein	NA	NA	NA	NA
VEL96987.1\|2256368_2256653_+\|holin	holin family protein (superfamily II)	NA	NA	NA	NA
VEL96988.1\|2256746_2257226_+	hypothetical protein	NA	NA	NA	NA
VEL96989.1\|2257188_2259234_+\|terminase	phage terminase large subunit GpA-like protein	A0A2D1GMT1	Marinobacter_phage	1.5e-138	44.7
VEL96990.1\|2259233_2259746_+	hypothetical protein	A0A0K1Y6G7	Rhodobacter_phage	1.2e-07	30.3
VEL96991.1\|2259749_2261333_+\|portal	lambda family phage portal protein	A0A2H4JBW2	uncultured_Caudovirales_phage	4.6e-66	32.2
VEL96992.1\|2261307_2263203_+\|capsid	HK97 family phage major capsid protein	Q6R4V3	Vibrio_virus	7.9e-105	37.0
VEL96993.1\|2263273_2263528_+	hypothetical protein	NA	NA	NA	NA
VEL96994.1\|2263532_2263820_+	hypothetical protein	NA	NA	NA	NA
VEL96995.1\|2263816_2264368_+	hypothetical protein	NA	NA	NA	NA
VEL96996.1\|2264367_2264766_+\|tail	minor tail protein U	NA	NA	NA	NA

DBSCAN-SWA_5

4171317 : 4177287

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEL98570.1\|4171317_4172505_-	UDPglucose 6-dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	5.1e-110	55.3
VEL98571.1\|4172804_4173884_-	6-dehydratase	K7QJG5	Escherichia_phage	1.7e-96	52.6
VEL98572.1\|4173902_4174763_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	3.5e-36	36.5
VEL98573.1\|4174772_4175318_-	5-epimerase	I7HJC4	Enterobacteria_phage	3.2e-51	58.2
VEL98574.1\|4175392_4176274_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.5e-98	59.2
VEL98575.1\|4176369_4177287_-	FkbM family methyltransferase	Q58M88	Prochlorococcus_phage	3.3e-08	29.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage