| LR214970.1|VEU60762.1|415682_415898_+|Predicted-transcriptional-regulator |
gnl|CDD|379188 |
pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.
|
9.09783e-14 |
| LR214970.1|VEU60766.1|421481_424421_-|Phage-related-protein |
gnl|CDD|224117 |
COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].
|
2.96601e-09 |
| LR214970.1|VEU60757.1|408565_410350_-|Probable-type-I-restriction-enzyme-BthVORF4518P-M-protein |
gnl|CDD|280533 |
pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
|
4.43358e-70 |
| LR214970.1|VEU60764.1|419166_419619_+|Type-I-restriction-modification-system-methyltransferase-subunit |
gnl|CDD|341163 |
cd17274, RMtype1_S_Eco540ANI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Eco540ANI TRD1-CR1, S.Eco2747AII TRD1-CR1, S.Eco540AI TRD1-CR1, S.Eco2747II TRD1-CR1, and S.Eco540I TRD1-CR1. Escherichia coli ST540AN S subunit (S.Eco540ANI ), Escherichia coli ST540A S subunit (S.Eco540AI), and Escherichia coli ST540 S subunit (S.Eco540I) recognize 5'... GAANNNNNNRTCG ... 3'. Escherichia coli ST2747A S subunit (S.Eco2747AII) and Escherichia coli ST2747 S subunit (S.Eco2747II) recognize 5'... GAANNNNNNNTAAA ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.
|
3.67515e-10 |
| LR214970.1|VEU60759.1|411513_412365_-|DNA-damage-inducible-protein-D |
gnl|CDD|214989 |
smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.
|
7.46965e-17 |
| LR214970.1|VEU60763.1|415897_419122_+|Probable-type-I-restriction-enzyme-BthVORF4518P-M-protein |
gnl|CDD|341133 |
cd17244, RMtype1_S_Apa101655I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Acetobacter pasteurianus S subunit (S.Apa101655I) TRD2-CR2. The S. Apa101655I S subunit recognizes 5'... TTAGNNNNNNTTC... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.
|
3.76097e-67 |
| LR214970.1|VEU60761.1|413907_415203_-|putative-ATPase,-AAA+-superfamily |
gnl|CDD|224292 |
COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].
|
8.23813e-56 |
| LR214970.1|VEU60765.1|420211_421114_+|Uncharacterised-protein |
gnl|CDD|372614 |
pfam13475, DUF4116, Domain of unknown function (DUF4116).
|
9.02141e-11 |
| LR214970.1|VEU60760.1|412736_413579_-|KilA-N-domain |
gnl|CDD|367917 |
pfam04383, KilA-N, KilA-N domain. The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.
|
2.68389e-16 |
| LR214970.1|VEU60769.1|429318_430362_+|oligopeptide-ABC-transporter-permease |
gnl|CDD|223674 |
COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].
|
2.16632e-55 |
| LR214970.1|VEU60758.1|410395_411214_-|Type-I-restriction-modification-system-methyltransferase-subunit |
gnl|CDD|211578 |
TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].
|
6.67341e-32 |
| LR214970.1|VEU60754.1|405578_406235_-|Uncharacterised-protein |
gnl|CDD|379042 |
pfam13151, DUF3990, Protein of unknown function (DUF3990). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.
|
9.70715e-50 |
| LR214970.1|VEU60752.1|404596_405031_-|Uncharacterised-protein |
gnl|CDD|341138 |
cd17249, RMtype1_S_EcoR124I-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.EcoR124I TRD2-CR2, S.Eco540I TRD2-CR2, S.Eco540AI TRD2-CR2, and S.Eco540ANI TRD2-CR2. Escherichia coli (R124) S subunit (S.EcoR124I), E. coli ST540 S subunit (S.Eco540I), E. coli ST540A S subunit (S.Eco540AI), and Escherichia coli ST540AN S subunit (S.Eco540ANI) recognize the sequence 5'... GAANNNNNNRTCG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example, S.EcoR124I -TRD1 recognizes GAA/TTC, and -TRD2 recognizes CGAY/RTCG. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.
|
9.61085e-09 |
| LR214970.1|VEU60770.1|430373_431624_+|Oligopeptide-transport-system-permease-protein-oppC |
gnl|CDD|224094 |
COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].
|
6.46051e-48 |
| LR214970.1|VEU60755.1|406249_407374_-|restriction-modification-system-specificity-subunit |
gnl|CDD|341185 |
cd17494, RMtype1_S_Sma198ORF994P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Streptococcus macedonicus ACA-DC 198 S subunit (S1.Sma198ORF994P) TRD2-CR2 and Lactobacillus amylovorus GRL 1112 S subunit (S1.LamGRLORF5415P) TRD2-CR2. The recognition sequences of Streptococcus macedonicus ACA-DC 198 S subunit (S1.Sma198ORF994P) and Lactobacillus amylovorus GRL 1112 S subunit (S1.LamGRLORF5415P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. This subfamily of TRD-CR's shows similarity to TRD1-CR1 of Aminobacterium colombiense DSM 12261 S subunit (S.Aco12261I), which recognizes 5'... GCANNNNNNTGT ... 3'. This subfamily may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.
|
1.48366e-81 |
| LR214970.1|VEU60756.1|407366_408566_-|Type-I-restriction-modification-DNA-specificity-domain |
gnl|CDD|223804 |
COG0732, HsdS, Restriction endonuclease S subunits [Defense mechanisms].
|
2.16904e-14 |
| LR214970.1|VEU60771.1|431632_432724_+|ABC-type-dipeptide/oligopeptide/nickel-transport-system-ATP-binding-protein-(DppD/OppD) |
gnl|CDD|223521 |
COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].
|
1.58464e-143 |
