CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
LR215034	Mycoplasma gallopavonis strain NCTC10186 genome assembly, plasmid: 4	0 crisprs	NA	0
LR215031	Mycoplasma gallopavonis strain NCTC10186 genome assembly, chromosome: 1	0 crisprs	DEDDh	1
LR215032	Mycoplasma gallopavonis strain NCTC10186 genome assembly, plasmid: 2	0 crisprs	NA	2
LR215033	Mycoplasma gallopavonis strain NCTC10186 genome assembly, plasmid: 3	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

257066 : 269972

Vibrio_phage(11.11%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEU72733.1\|257066_257669_+	translation initiation factor IF-3	A0A2I7S9Q1	Vibrio_phage	1.1e-12	31.8
VEU72734.1\|257649_257838_+	50S ribosomal protein L35	NA	NA	NA	NA
VEU72735.1\|257903_258257_+	50S ribosomal protein L20	NA	NA	NA	NA
VEU72736.1\|258377_260285_-	Neutral endopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	8.3e-70	29.4
VEU72737.1\|260516_261734_+	ATPase	A0A127AWE7	Bacillus_phage	4.2e-67	37.0
VEU72738.1\|261736_262693_+\|tRNA	phenylalanyl-tRNA synthetase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.2e-24	35.2
VEU72739.1\|262682_263372_+	uracil-DNA glycosylase	A0A0Y0A6W9	Macropodid_alphaherpesvirus	1.7e-28	41.1
VEU72740.1\|263373_265542_+\|tRNA	Phenylalanine--tRNA ligase beta subunit	A0A1L3IZU3	BeAn_58058_virus	4.3e-14	34.6
VEU72741.1\|265553_266825_+	Serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.1e-94	48.2
VEU72742.1\|266929_268633_-\|tRNA	lysyl-tRNA synthetase	A0A1V0SIS0	Klosneuvirus	8.3e-13	26.5
VEU72743.1\|268625_269972_-\|tRNA	histidyl-tRNA synthetase	A0A2K9L0H9	Tupanvirus	2.7e-14	26.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. LR215032

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

49284 : 121352

Bacillus_phage(30.0%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEU73036.1\|49284_50913_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA
VEU73037.1\|50919_51219_+	Uncharacterised protein	NA	NA	NA	NA
VEU73038.1\|51279_52059_-	Uncharacterised protein	NA	NA	NA	NA
VEU73039.1\|52356_53586_-	Integrase-recombinase protein	NA	NA	NA	NA
VEU73040.1\|53736_53994_-	30S ribosomal protein S18	NA	NA	NA	NA
VEU73041.1\|54008_54593_-	single strand binding protein	L0P2N6	Streptococcus_phage	4.0e-15	40.7
VEU73042.1\|54629_55049_-	30S ribosomal protein S6	NA	NA	NA	NA
VEU73043.1\|55339_57208_+	DNA topoisomerase 1	A0A167R9A0	Powai_lake_megavirus	1.7e-67	30.9
VEU73044.1\|57341_59330_+	Trifunctional nucleotide phosphoesterase protein YfkN precursor	NA	NA	NA	NA
VEU73045.1\|59358_60738_-	thioredoxin reductase	A0A2K5B2C5	Erysipelothrix_phage	8.6e-85	41.0
VEU73046.1\|60738_61194_-	Putative HTH-type transcriptional regulator ywnA	NA	NA	NA	NA
VEU73047.1\|61267_62449_-	Integrase-recombinase protein	A0A2I7SC85	Paenibacillus_phage	7.5e-13	27.7
VEU73048.1\|62530_63763_-	ABC-type multidrug/protein/lipid transport system ATPase component	W8CYL7	Bacillus_phage	2.3e-28	25.8
VEU73049.1\|63913_65584_-\|transposase	transposase domain-containing protein	NA	NA	NA	NA
VEU73050.1\|65620_66418_-	ABC-type multidrug/protein/lipid transport system ATPase component	NA	NA	NA	NA
VEU73051.1\|66410_68177_-	ABC-type multidrug/protein/lipid transport system ATPase component	W8CYL7	Bacillus_phage	2.5e-36	28.0
VEU73052.1\|68341_69616_-	Integrase-recombinase protein	NA	NA	NA	NA
VEU73053.1\|69659_70094_-	Ribosomal RNA large subunit methyltransferase H	NA	NA	NA	NA
VEU73054.1\|70093_71140_-	glucose inhibited division protein A	NA	NA	NA	NA
VEU73055.1\|71391_72573_+	Integrase-recombinase protein	A0A2I7SC85	Paenibacillus_phage	7.5e-13	27.7
VEU73056.1\|72549_73206_-\|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	NA	NA	NA	NA
VEU73057.1\|73299_74178_-	GTP-binding protein	NA	NA	NA	NA
VEU73058.1\|74179_74578_-	Cytidine deaminase (Cytidine aminohydrolase)	NA	NA	NA	NA
VEU73059.1\|74580_75048_-\|protease	conserved hypothetical metalloprotease	NA	NA	NA	NA
VEU73060.1\|75074_75461_-	Uncharacterised protein	NA	NA	NA	NA
VEU73061.1\|75454_77479_-	ABC transporter, ATP-binding protein	NA	NA	NA	NA
VEU73062.1\|77590_78028_+	Ribose-5-phosphate isomerase B (Phosphoriboisomerase B)	NA	NA	NA	NA
VEU73063.1\|78190_79615_+	Cardiolipin synthase	NA	NA	NA	NA
VEU73064.1\|79729_84247_+	Uncharacterised protein	NA	NA	NA	NA
VEU73065.1\|84370_85630_+	Integrase core domain	NA	NA	NA	NA
VEU73066.1\|85867_86887_+	Glycosyl transferase family 2	NA	NA	NA	NA
VEU73067.1\|86889_87582_+	RDD family protein	NA	NA	NA	NA
VEU73068.1\|87590_89789_+	ATP-dependent DNA helicase UvrD/PcrA	A7KV33	Bacillus_phage	4.7e-93	34.1
VEU73069.1\|89792_91424_+	Uncharacterised protein	NA	NA	NA	NA
VEU73070.1\|91461_92760_-	NAD-dependent aldehyde dehydrogenase domain-containing protein	NA	NA	NA	NA
VEU73071.1\|92982_94611_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA
VEU73072.1\|94774_95251_-	Uncharacterised protein	NA	NA	NA	NA
VEU73073.1\|95252_96092_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
VEU73074.1\|96066_96813_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
VEU73075.1\|96812_97685_-	L-ribulose-5-phosphate 3-epimerase ulaE	NA	NA	NA	NA
VEU73076.1\|97692_98349_-	Probable 3-keto-L-gulonate-6-phosphate decarboxylase	NA	NA	NA	NA
VEU73077.1\|98368_98851_-	ascorbate-specific PTS system enzyme II Ccomponent	NA	NA	NA	NA
VEU73078.1\|98852_99131_-	protein-N(pi)-phosphohistidine--sugar phosphotransferase	NA	NA	NA	NA
VEU73079.1\|99177_100881_-	Ascorbate-specific PTS system EIIC component	NA	NA	NA	NA
VEU73080.1\|100944_102000_-	phosphotriesterase-related protein	NA	NA	NA	NA
VEU73081.1\|102249_103125_+	GntR family transcriptional regulator	NA	NA	NA	NA
VEU73082.1\|103149_105078_-	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA
VEU73083.1\|105255_106437_-	Integrase-recombinase protein	NA	NA	NA	NA
VEU73084.1\|106501_106801_-	Uncharacterised protein	NA	NA	NA	NA
VEU73085.1\|106909_108481_-	hypothetical lipoprotein	NA	NA	NA	NA
VEU73086.1\|108543_109818_+	Integrase-recombinase protein	NA	NA	NA	NA
VEU73087.1\|109983_111336_-\|tRNA	lysyl-tRNA synthetase	H2EDM5	Moumouvirus	3.7e-72	35.8
VEU73088.1\|111360_111825_-	beta-galactosidase-like protein	NA	NA	NA	NA
VEU73089.1\|111964_112453_-	Uncharacterised protein	NA	NA	NA	NA
VEU73090.1\|112442_115574_-	preprotein translocase subunit SecA	NA	NA	NA	NA
VEU73091.1\|115758_116754_+\|tRNA	tryptophanyl-tRNA synthetase	NA	NA	NA	NA
VEU73092.1\|116769_118515_+\|tRNA	Threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	9.8e-94	35.1
VEU73093.1\|118514_118988_+	Uncharacterised protein	NA	NA	NA	NA
VEU73094.1\|119209_120880_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA
VEU73095.1\|121049_121352_+\|transposase	putative transposase domain protein	NA	NA	NA	NA

DBSCAN-SWA_2

146057 : 211610

Mycoplasma_phage(50.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEU73118.1\|146057_146675_+\|tRNA	tRNA (guanine-N(7)-)-methyltransferase	NA	NA	NA	NA
VEU73119.1\|146904_148575_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA
VEU73120.1\|149032_149941_+	N-acetylmannosamine kinase	NA	NA	NA	NA
VEU73121.1\|150073_151633_+	Uncharacterised protein	NA	NA	NA	NA
VEU73123.1\|151645_152800_+\|tRNA	Probable tRNA sulfurtransferase	NA	NA	NA	NA
VEU73124.1\|152914_154144_+	Integrase-recombinase protein	NA	NA	NA	NA
VEU73126.1\|154418_156047_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA
VEU73127.1\|156204_159222_-	Uncharacterised protein	NA	NA	NA	NA
VEU73128.1\|159351_160419_+	peptide chain release factor 1	NA	NA	NA	NA
VEU73129.1\|160418_161141_+	protoporphyrinogen oxidase	NA	NA	NA	NA
VEU73130.1\|161653_161935_+	DNA-binding protein HU	NA	NA	NA	NA
VEU73131.1\|161969_163229_-	Integrase core domain	NA	NA	NA	NA
VEU73132.1\|163309_163792_-	penicillin-binding protein-related factor A recombinase	A0A1C8E9C3	Bacillus_phage	4.7e-14	34.7
VEU73133.1\|163916_164651_+	Triosephosphate isomerase	NA	NA	NA	NA
VEU73134.1\|164695_166576_+	Uncharacterised protein	Q6GZ00	Mycoplasma_phage	7.4e-55	33.6
VEU73135.1\|166652_167834_+	Integrase-recombinase protein	A0A2I7SC85	Paenibacillus_phage	2.2e-12	27.2
VEU73136.1\|168236_169619_+	maltodextrin ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	8.1e-83	70.2
VEU73137.1\|169599_170439_+	polyamine (spermidine/putrescine) ABC transporter permease	Q6GZ02	Mycoplasma_phage	7.0e-90	63.4
VEU73138.1\|170431_171223_+	spermidine/putrescine ABC transporter membrane protein	Q6GZ01	Mycoplasma_phage	1.4e-76	57.2
VEU73139.1\|171227_173375_+	Uncharacterised protein	Q6GZ00	Mycoplasma_phage	3.4e-56	35.1
VEU73140.1\|173600_174197_+	50S ribosomal protein L11	NA	NA	NA	NA
VEU73141.1\|174196_174892_+	50S ribosomal protein L1	NA	NA	NA	NA
VEU73142.1\|174977_176159_+	Integrase-recombinase protein	A0A2I7SC85	Paenibacillus_phage	1.5e-13	28.5
VEU73143.1\|176255_176567_-	predicted ArsR-family transcription repressor	NA	NA	NA	NA
VEU73144.1\|176568_180156_-	putative DNA helicase	NA	NA	NA	NA
VEU73145.1\|180136_180478_-	PTS system glucose-specific transporter subunit IIB	NA	NA	NA	NA
VEU73146.1\|180619_181468_+	fatty acid-binding protein DegV-like protein	NA	NA	NA	NA
VEU73147.1\|181467_181743_+	Uncharacterised protein	NA	NA	NA	NA
VEU73148.1\|181739_182531_-	Uncharacterised protein	NA	NA	NA	NA
VEU73149.1\|182534_183218_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
VEU73150.1\|183201_183813_-	Uncharacterised protein	NA	NA	NA	NA
VEU73151.1\|183821_184157_-	Uncharacterised protein	NA	NA	NA	NA
VEU73152.1\|184181_185753_-	Magnesium transporter mgtE	NA	NA	NA	NA
VEU73153.1\|185757_186342_-	membrane protein	NA	NA	NA	NA
VEU73154.1\|186345_186570_-	Uncharacterised protein	NA	NA	NA	NA
VEU73155.1\|186734_187880_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	2.4e-101	51.4
VEU73156.1\|188179_194212_-	Uncharacterised protein	NA	NA	NA	NA
VEU73157.1\|194426_194765_-	Ribosome-binding factor A	NA	NA	NA	NA
VEU73158.1\|195075_196263_-	Phosphopentomutase	NA	NA	NA	NA
VEU73159.1\|196430_196655_+	azoreductase	NA	NA	NA	NA
VEU73160.1\|196626_197031_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
VEU73161.1\|197089_197692_-	Uncharacterised protein	NA	NA	NA	NA
VEU73162.1\|197940_198117_+	Uncharacterised protein	NA	NA	NA	NA
VEU73163.1\|198335_199160_+	Transposase	NA	NA	NA	NA
VEU73164.1\|199224_200406_+	Integrase-recombinase protein	A0A2I7SC85	Paenibacillus_phage	9.8e-13	27.7
VEU73165.1\|200442_200853_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA
VEU73166.1\|201002_201407_-	30S ribosomal protein s1	NA	NA	NA	NA
VEU73167.1\|201732_203097_+	Uncharacterised protein	NA	NA	NA	NA
VEU73168.1\|203381_206525_+	Uncharacterised protein	NA	NA	NA	NA
VEU73169.1\|206736_208365_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA
VEU73170.1\|208668_210081_-\|transposase	transposase domain-containing protein	NA	NA	NA	NA
VEU73171.1\|210122_211304_+	Integrase-recombinase protein	NA	NA	NA	NA
VEU73172.1\|211280_211610_-\|transposase	putative transposase domain protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR215031

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. LR215032

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection