CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR215051	Acholeplasma hippikon strain NCTC10172 genome assembly, plasmid: 2	0 crisprs	NA	0	0	0	0
LR215050	Acholeplasma hippikon strain NCTC10172 genome assembly, chromosome: 1	0 crisprs	csa3,cas3,DEDDh	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

171840 : 180339

Mycoplasma_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEU82168.1\|171840_172806_+	thioredoxin reductase	G3MA85	Bacillus_virus	8.3e-18	28.8
VEU82169.1\|172917_174213_+	adenylosuccinate lyase/hypoxanthine phosphoribosyltransferase	A0A1B3B081	Gordonia_phage	5.7e-14	29.0
VEU82170.1\|174227_174416_+	Uncharacterised protein	NA	NA	NA	NA
VEU82171.1\|174613_175792_+	multiple sugar ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.3e-37	42.0
VEU82172.1\|175791_176664_+	polyamine (spermidine/putrescine) ABC transporter permease	Q6GZ02	Mycoplasma_phage	1.2e-15	30.1
VEU82173.1\|176656_177442_+	polyamine (spermidine/putrescine) ABC transporter permease	Q6GZ01	Mycoplasma_phage	3.1e-15	29.1
VEU82174.1\|177441_178512_+	Spermidine/putrescine-binding periplasmic protein precursor	NA	NA	NA	NA
VEU82175.1\|178599_178980_+	N utilization substance protein B homolog	NA	NA	NA	NA
VEU82176.1\|178992_180339_+	Exodeoxyribonuclease 7 large subunit	A0A1V0SD82	Indivirus	1.4e-47	37.4

DBSCAN-SWA_2

253667 : 261488

uncultured_virus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEU82241.1\|253667_255023_+	DEAD-box ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.8e-55	35.4
VEU82242.1\|255039_256410_+\|tRNA	tRNA (uracil-5-)-methyltransferase related enzyme	E4ZFI6	Streptococcus_phage	2.0e-70	33.0
VEU82243.1\|257151_257790_-	Putative NADH-flavin reductase	NA	NA	NA	NA
VEU82244.1\|257968_258226_+	molecular chaperone GroES	A0A221S2B0	uncultured_virus	6.8e-12	45.2
VEU82245.1\|258256_259867_+	molecular chaperone GroEL	A0A240F779	uncultured_virus	9.2e-139	47.9
VEU82246.1\|259938_260658_-	Integrase core domain	A0A0C5AEA5	Paenibacillus_phage	2.6e-56	49.6
VEU82247.1\|260777_261488_-	Transposase and inactivated derivatives	A0A0C5AJ29	Paenibacillus_phage	1.6e-34	39.1

DBSCAN-SWA_3

346499 : 354555

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEU82329.1\|346499_347576_+	Probable diguanylate cyclase YdaM	A0A127AWB9	Bacillus_phage	1.9e-18	35.5
VEU82330.1\|347554_348766_+	2-acyl-glycerophospho-ethanolamine acyltransferase	NA	NA	NA	NA
VEU82331.1\|348734_350126_+	Sodium/glutamate symporter	NA	NA	NA	NA
VEU82332.1\|350148_351108_+	Lipase 2	A0A2P1EM31	Moumouvirus	7.0e-25	30.0
VEU82333.1\|351116_351950_+	ribosomal large subunit pseudouridine synthase D	A0A2H4UV25	Bodo_saltans_virus	2.0e-07	27.7
VEU82334.1\|352059_352614_-	Integrase core domain	A0A0N9SIX5	Staphylococcus_phage	3.6e-42	65.7
VEU82335.1\|352895_353204_-	Uncharacterised protein	A0A0N7GFG6	Staphylococcus_phage	1.9e-16	48.4
VEU82336.1\|353350_353620_+	Uncharacterised protein	NA	NA	NA	NA
VEU82337.1\|353886_354555_+	Integrase core domain	A0A2I6AZV9	Macacine_betaherpesvirus	4.5e-31	41.5

DBSCAN-SWA_4

720736 : 728240

Paenibacillus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEU82684.1\|720736_721939_-	Riboflavin biosynthesis protein ribBA	A0A2H4PQS2	Staphylococcus_phage	3.5e-74	38.3
VEU82685.1\|722124_722979_-	Predicted integral membrane protein	NA	NA	NA	NA
VEU82686.1\|723155_723593_-	8-oxo-dGTP diphosphatase	A0A248SK16	Salicola_phage	8.1e-05	43.3
VEU82687.1\|723729_724614_-	Glyoxal reductase	A0A2H4PQR8	Staphylococcus_phage	7.3e-53	40.6
VEU82688.1\|724834_725266_+	Protein of uncharacterised function (DUF2871)	NA	NA	NA	NA
VEU82689.1\|725400_725610_-	Uncharacterised protein	A0A0C5AEA5	Paenibacillus_phage	2.4e-15	56.9
VEU82690.1\|725613_726120_-	Integrase core domain	A0A0C5AEA5	Paenibacillus_phage	9.9e-31	45.5
VEU82691.1\|726239_726950_-	Transposase and inactivated derivatives	A0A0C5AJ29	Paenibacillus_phage	2.1e-34	39.6
VEU82692.1\|727056_727785_-	Predicted membrane protein	NA	NA	NA	NA
VEU82693.1\|727769_728240_-	Predicted membrane protein	A0A1V0SD05	Indivirus	1.8e-05	29.4

DBSCAN-SWA_5

984344 : 999559

Streptococcus_phage(40.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEU82936.1\|984344_986486_-	Copper-exporting P-type ATPase A	A0A218MNH6	uncultured_virus	1.5e-83	31.8
VEU82937.1\|986488_986842_-	Transcriptional repressor smtB homolog	E4ZFI8	Streptococcus_phage	3.7e-08	28.6
VEU82938.1\|986933_987923_-	Uncharacterized protein conserved in bacteria (DUF2179)	M1Q1P6	Streptococcus_phage	2.3e-15	25.6
VEU82939.1\|987931_989482_-\|tRNA	Methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	5.5e-96	36.8
VEU82940.1\|990605_991322_-	methyltransferase	NA	NA	NA	NA
VEU82941.1\|991272_992280_-	DNA polymerase III delta' subunit	M1NSC1	Streptococcus_phage	1.7e-10	29.5
VEU82942.1\|992261_992882_-	thymidylate kinase	M1PSC7	Streptococcus_phage	5.3e-42	45.5
VEU82943.1\|992908_993634_-\|tRNA	tRNA pseudouridine synthase A	NA	NA	NA	NA
VEU82944.1\|993623_994622_-	Energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
VEU82945.1\|994591_995467_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-18	34.0
VEU82946.1\|995442_996252_-	cobalt ABC transporter ATPase component	A0A1V0SJ29	Klosneuvirus	2.3e-21	34.0
VEU82947.1\|996657_997509_+	thioredoxin reductase	G3MA85	Bacillus_virus	3.2e-29	29.2
VEU82948.1\|997519_999559_-	Extracellular ribonuclease precursor	A0A2P0VMP9	Tetraselmis_virus	7.4e-16	30.8

DBSCAN-SWA_6

1180279 : 1189132

Clostridium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VEU83126.1\|1180279_1182574_+	Anaerobic ribonucleoside-triphosphate reductase	A0A0A8WEK0	Clostridium_phage	7.4e-174	44.5
VEU83127.1\|1182515_1183061_+	Pyruvate formate-lyase 1-activating enzyme	A0A0A8WJI9	Clostridium_phage	1.1e-22	37.4
VEU83128.1\|1183073_1183466_+	ribonucleotide reductase stimulatory protein	G3MBF1	Bacillus_virus	4.7e-20	44.1
VEU83129.1\|1183444_1185547_+	Ribonucleoside-diphosphate reductase subunit alpha 2	U5PY35	Bacillus_phage	3.9e-230	56.9
VEU83130.1\|1185559_1186663_+	Ribonucleoside-diphosphate reductase subunit beta nrdF2	A0A076G7U1	Bacillus_phage	1.1e-95	54.2
VEU83131.1\|1186653_1186914_+	Uncharacterised protein	NA	NA	NA	NA
VEU83132.1\|1186945_1189132_-	Chitinase A1 precursor	A0A1C8ZYL2	Chrysodeixis_includens_nucleopolyhedrovirus	1.6e-13	25.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage