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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LR215973 Nocardia cyriacigeorgica strain 3012STDY6756504 genome assembly, chromosome: 1 5 crisprs csa3,WYL,cas4,Cas14u_CAS-V,cas3,DEDDh,DinG 0 6 1 0

Results visualization

1. LR215973
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR215973_2 558471-558558 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR215973_3 2045647-2045733 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR215973_7 4507574-4507673 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR215973_10 5342200-5342309 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR215973_11 5868031-5868315 Orphan NA
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NC_008712 Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence 211456-211481 3 0.885
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 119296-119321 3 0.885
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 KX752698 Mycobacterium phage Tonenili, complete genome 17363-17388 3 0.885
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1693971-1693996 3 0.885
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 103305-103330 3 0.885
LR215973_12 12.1|6445130|24|LR215973|CRISPRCasFinder 6445130-6445153 24 NZ_CP019603 Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence 391359-391382 3 0.875
LR215973_12 12.1|6445130|24|LR215973|CRISPRCasFinder 6445130-6445153 24 NZ_CP009113 Rhodococcus opacus strain 1CP plasmid pR1CP2, complete sequence 21898-21921 3 0.875
LR215973_12 12.1|6445130|24|LR215973|CRISPRCasFinder 6445130-6445153 24 NZ_CP037915 Sphingomonas sp. AAP5 plasmid p150, complete sequence 53279-53302 3 0.875
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 LR134127 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 7 249526-249551 4 0.846
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NZ_CP030129 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence 151959-151984 4 0.846
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NZ_CP030365 Salinibacter ruber strain M1 plasmid pSR116, complete sequence 100099-100124 4 0.846
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 MT723933 Streptomyces phage Keanu, complete genome 71986-72011 5 0.808
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 5454114-5454139 5 0.808
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NC_013531 Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01, complete sequence 48541-48566 5 0.808
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NZ_CP029356 Azospirillum sp. CFH 70021 plasmid unnamed1 208747-208772 5 0.808
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 657361-657386 5 0.808
LR215973_1 1.1|234941|29|LR215973|CRISPRCasFinder 234941-234969 29 NC_048797 Bacillus phage vB_BmeM-Goe8, complete genome 8053-8081 6 0.793
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NZ_CP040822 Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence 44586-44611 6 0.769
LR215973_6 6.2|4118761|26|LR215973|CRISPRCasFinder 4118761-4118786 26 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 305170-305195 6 0.769
LR215973_11 11.2|5868124|33|LR215973|CRISPRCasFinder 5868124-5868156 33 NC_008269 Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence 300018-300050 6 0.818
LR215973_1 1.1|234941|29|LR215973|CRISPRCasFinder 234941-234969 29 NC_008043 Ruegeria sp. TM1040 megaplasmid, complete sequence 288344-288372 7 0.759
LR215973_11 11.1|5868061|33|LR215973|CRISPRCasFinder 5868061-5868093 33 NZ_CP030127 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence 687661-687693 7 0.788
LR215973_11 11.1|5868061|33|LR215973|CRISPRCasFinder 5868061-5868093 33 NZ_CP021373 Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence 369091-369123 8 0.758
LR215973_11 11.2|5868124|33|LR215973|CRISPRCasFinder 5868124-5868156 33 NC_010625 Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence 1720259-1720291 8 0.758
LR215973_11 11.1|5868061|33|LR215973|CRISPRCasFinder 5868061-5868093 33 MN234184 Mycobacterium phage IdentityCrisis, complete genome 28339-28371 9 0.727
LR215973_11 11.2|5868124|33|LR215973|CRISPRCasFinder 5868124-5868156 33 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 860030-860062 9 0.727
LR215973_11 11.2|5868124|33|LR215973|CRISPRCasFinder 5868124-5868156 33 NZ_CP054618 Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence 66673-66705 9 0.727
LR215973_5 5.1|3272814|31|LR215973|CRISPRCasFinder 3272814-3272844 31 NZ_CP030366 Salinibacter ruber strain M1 plasmid pSR66, complete sequence 11939-11969 10 0.677

1. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 3, identity: 0.885

tgcaccggctcgccgagggccgcagg	CRISPR spacer
tgcaccggctggccgagggccgcggt	Protospacer
********** ************.* 

2. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 3, identity: 0.885

tgcaccggctcgccgagggccgcagg	CRISPR spacer
tgcaccggctcgccgagggcgaccgg	Protospacer
******************** .* **

3. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to KX752698 (Mycobacterium phage Tonenili, complete genome) position: , mismatch: 3, identity: 0.885

tgcaccggctcgccgagggccgcagg	CRISPR spacer
tggcccggctcgccgaggcccgcagg	Protospacer
**  ************** *******

4. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 3, identity: 0.885

tgcaccggctcgccgagggccgcagg	CRISPR spacer
tgcaccggctcgccgagggcgaccgg	Protospacer
******************** .* **

5. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.885

tgca-ccggctcgccgagggccgcagg	CRISPR spacer
-gcaggctgctcgccgagggccgcagg	Protospacer
 ***  * *******************

6. spacer 12.1|6445130|24|LR215973|CRISPRCasFinder matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 3, identity: 0.875

cgcgttgctgctggccgggttctg	CRISPR spacer
ggcgctgctgctggcctggttctg	Protospacer
 ***.*********** *******

7. spacer 12.1|6445130|24|LR215973|CRISPRCasFinder matches to NZ_CP009113 (Rhodococcus opacus strain 1CP plasmid pR1CP2, complete sequence) position: , mismatch: 3, identity: 0.875

cgcgttgctgctggccgggttctg	CRISPR spacer
cgcggtgctgctggccgggtgctc	Protospacer
**** *************** ** 

8. spacer 12.1|6445130|24|LR215973|CRISPRCasFinder matches to NZ_CP037915 (Sphingomonas sp. AAP5 plasmid p150, complete sequence) position: , mismatch: 3, identity: 0.875

cgcgttgctgctggccgggttctg	CRISPR spacer
cgcgctgctgctggccggcttctt	Protospacer
****.************* **** 

9. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to LR134127 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 7) position: , mismatch: 4, identity: 0.846

tgcaccggctcgccgagggccgcagg	CRISPR spacer
aacaccggctcgccgaggcccggagg	Protospacer
 .**************** *** ***

10. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NZ_CP030129 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.846

tgcaccggctcgccgagggccgcagg	CRISPR spacer
tgcattggctcgccgagggccgcggc	Protospacer
****..*****************.* 

11. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NZ_CP030365 (Salinibacter ruber strain M1 plasmid pSR116, complete sequence) position: , mismatch: 4, identity: 0.846

tgcaccggctcgccgagggccgcagg	CRISPR spacer
tgcacctgctcgtcgagggccgcgag	Protospacer
****** *****.**********..*

12. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to MT723933 (Streptomyces phage Keanu, complete genome) position: , mismatch: 5, identity: 0.808

tgcaccggctcgccgagggccgcagg	CRISPR spacer
ccgaccggctcgccgaggtccgcatg	Protospacer
.  *************** ***** *

13. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 5, identity: 0.808

tgcaccggctcgccgagggccgcagg	CRISPR spacer
tgcacctgttcgccgagggccgccac	Protospacer
****** *.************** . 

14. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NC_013531 (Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01, complete sequence) position: , mismatch: 5, identity: 0.808

tgcaccggctcgccgagggccgcagg	CRISPR spacer
agcaccggctcgccgagcgcggcacc	Protospacer
 **************** ** ***  

15. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 5, identity: 0.808

tgcaccggctcgccgagggccgcagg	CRISPR spacer
accaccggcacgccgagggccgccga	Protospacer
  ******* ************* *.

16. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

tgcaccggctcgccgagggccgcagg	CRISPR spacer
cgcaccggctcggcgcgggccgcaca	Protospacer
.*********** ** ******** .

17. spacer 1.1|234941|29|LR215973|CRISPRCasFinder matches to NC_048797 (Bacillus phage vB_BmeM-Goe8, complete genome) position: , mismatch: 6, identity: 0.793

gcgccgccggtacctgagccaacgcctgc	CRISPR spacer
gaggacccggtacctgagccaacacctga	Protospacer
* *   *****************.**** 

18. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 6, identity: 0.769

tgcaccggctcgccgagggccgcagg	CRISPR spacer
cccaccggctcgccgagggccttcag	Protospacer
. ******************* . .*

19. spacer 6.2|4118761|26|LR215973|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 6, identity: 0.769

tgcaccggctcgccgagggccgcagg	CRISPR spacer
aacaccggctcgccgaggaccgcgtc	Protospacer
 .****************.****.  

20. spacer 11.2|5868124|33|LR215973|CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 6, identity: 0.818

-tgtcgccgcgcagcgtcagggtgcggcggtgaa	CRISPR spacer
cgggcgcca-gcaccgtcagggtgcggcggagaa	Protospacer
  * ****. *** **************** ***

21. spacer 1.1|234941|29|LR215973|CRISPRCasFinder matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.759

gcgccgccggtacctgagccaacgcctgc	CRISPR spacer
ctgccgccggtcgctgagccaacgccgat	Protospacer
 .*********  ************* ..

22. spacer 11.1|5868061|33|LR215973|CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

cgcggcggccaggcgccagggtgtcgccgcgca	CRISPR spacer
cacaccggccgggcgccagggtggcgccgcggg	Protospacer
*.*. *****.************ ******* .

23. spacer 11.1|5868061|33|LR215973|CRISPRCasFinder matches to NZ_CP021373 (Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence) position: , mismatch: 8, identity: 0.758

cgcggcggccaggcgccagggtgtcgccgcgca	CRISPR spacer
cgatcgcgccatgcgcaagggtgtcgccgcgga	Protospacer
**     **** **** ************** *

24. spacer 11.2|5868124|33|LR215973|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 8, identity: 0.758

tgtcgccgcgcagcgtcagggtgcggcggtgaa	CRISPR spacer
gctcgccgcgcagcggcatggtgcggcgttttt	Protospacer
  ************* ** ********* *   

25. spacer 11.1|5868061|33|LR215973|CRISPRCasFinder matches to MN234184 (Mycobacterium phage IdentityCrisis, complete genome) position: , mismatch: 9, identity: 0.727

cgcggcggccaggcgccagggtgtcgccgcgca	CRISPR spacer
ggacgaggccagccgccagggcgtcgccgccat	Protospacer
 *  * ****** ********.********   

26. spacer 11.2|5868124|33|LR215973|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 9, identity: 0.727

tgtcgccgcgcagcgtcagggtgcggcggtgaa	CRISPR spacer
gggggccgcgacgcgtcagggtgcggcgagaag	Protospacer
 *  ******  ****************. .*.

27. spacer 11.2|5868124|33|LR215973|CRISPRCasFinder matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.727

tgtcgccgcgcagcgtcagggtgcggcggtgaa	CRISPR spacer
cttcgccgcgcagcgtcacggtgaggtgacgcc	Protospacer
. **************** **** **.*..*  

28. spacer 5.1|3272814|31|LR215973|CRISPRCasFinder matches to NZ_CP030366 (Salinibacter ruber strain M1 plasmid pSR66, complete sequence) position: , mismatch: 10, identity: 0.677

cctcaaggaaaaagccaggcacgagaaggaa	CRISPR spacer
tgccaaggaaaaactcaggcacgagacactg	Protospacer
. .********** .*********** .  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2961975 : 2972389 8 Bacillus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage