CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LR215979	Fusobacterium ulcerans ATCC 49185 isolate Fusobacterium ulcerans 81A6 genome assembly, chromosome: 1	6 crisprs	NA	0	9	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR215979_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR215979_1

45213-45331

Orphan

Consensus_repeat	Method
ATATAATAAATACAGGAGTTATTTATGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR215979_1

>merge|LR215979|1|45213-45331|CRISPRCasFinder
ATATAATAAATACTGGAATATTGAATAGTAAAGTTATTGGTCCTTCCAAGAGTTATGGAGTATATCTTAGTTCTTCATCTGAAGCAGAAAATATAATAAATACTGGAGTAGTAACAGTT

>LR215979|1|1|45213-45331|CRISPRCasFinder
ATATAATAAATACTGGAATATTGAATAG	TAAAGTTATTGGTCCTTCCAAGAGTTATGGAGTATATCTTAGTTCTTCATCTGAAGCAGAAA
ATATAATAAATACTGGAGTAGTAACAGTT

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Crispr_ID: LR215979_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR215979_2

45474-45645

Orphan

Consensus_repeat	Method
ATATAATAAATACAGGAGTTATTTATGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of LR215979_2

>merge|LR215979|2|45474-45645|CRISPRCasFinder
ACATAGAAAATACTGGCTTGATATATAGTGCAGAATCTGGAATGTATCTTGCTTCTTCAAGCGTAGGGGATATAATAAATACAGGAGTTATTTATGGTGATGATTCTCGAGGAATCGGTCAATATAGTGGGAGTACTATATCTCATATAACAAATACAGGAGTTATTTATGG

>LR215979|2|2|45474-45645|CRISPRCasFinder
ACATAGAAAATACTGGCTTGATATATAG	TGCAGAATCTGGAATGTATCTTGCTTCTTCAAGCGTAGGGG
ATATAATAAATACAGGAGTTATTTATGG	TGATGATTCTCGAGGAATCGGTCAATATAGTGGGAGTACTATATCTC
ATATAACAAATACAGGAGTTATTTATGG

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Crispr_ID: LR215979_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR215979_3

601047-601336

Orphan

Consensus_repeat	Method
AAATTGAATAGTAACTTAGAAGTTTTTAAAT	PILER-CR
ATTGAATAGTAACTTAGAAGTTTTTAAAT	CRISPRCasFinder
ATTGAATAGTAACTTAGAAGTTTTTAAATA	CRT

4 spacers

The CRISPR arrays of LR215979_3

>merge|LR215979|3|601047-601336|PILER-CR,CRISPRCasFinder,CRT
ATTGAATAGTAACTTAGAAGTTTTTAAATAAAGTATACTTAAATCTAAATGGAATAAGTTTAAAAAATTGAATAGTAACTTAGAAGTTTTTAAATTCTGGTAATACCTCTTTACAATATGCTTCAATTAATATTGAATAGTAACTTAGAAGTTTTTAAATATAAACTAAGGCTTGAATGGTCGGAAGCCGAAACAGATTGAATAGTAACTTAGAAGTTTTTAAATAAAATAAAAGAAGCCGCTTTGTAATTTTCGGCTTCATTGAATAATAATTTAGAAGTTTTTAATTA

>LR215979|3|1|601047-601271|PILER-CR
ATTGAATAGTAACTTAGAAGTTTTTAAATAA	AGTATACTTAAATCTAAATGGAATAAGTTTAAAAA
ATTGAATAGTAACTTAGAAGTTTTTAAATTC	TGGTAATACCTCTTTACAATATGCTTCAATTAAT
ATTGAATAGTAACTTAGAAGTTTTTAAATAT	AAACTAAGGCTTGAATGGTCGGAAGCCGAAACAG
ATTGAATAGTAACTTAGAAGTTTTTAAAT

>LR215979|3|3|601047-601335|CRISPRCasFinder
ATTGAATAGTAACTTAGAAGTTTTTAAAT	AAAGTATACTTAAATCTAAATGGAATAAGTTTAAAAA
ATTGAATAGTAACTTAGAAGTTTTTAAAT	TCTGGTAATACCTCTTTACAATATGCTTCAATTAAT
ATTGAATAGTAACTTAGAAGTTTTTAAAT	ATAAACTAAGGCTTGAATGGTCGGAAGCCGAAACAG
ATTGAATAGTAACTTAGAAGTTTTTAAAT	AAAATAAAAGAAGCCGCTTTGTAATTTTCGGCTTC
ATTGAATAATAATTTAGAAGTTTTTAATT

>LR215979|3|1|601047-601336|CRT
ATTGAATAGTAACTTAGAAGTTTTTAAATA	AAGTATACTTAAATCTAAATGGAATAAGTTTAAAAA
ATTGAATAGTAACTTAGAAGTTTTTAAATT	CTGGTAATACCTCTTTACAATATGCTTCAATTAAT
ATTGAATAGTAACTTAGAAGTTTTTAAATA	TAAACTAAGGCTTGAATGGTCGGAAGCCGAAACAG
ATTGAATAGTAACTTAGAAGTTTTTAAATA	AAATAAAAGAAGCCGCTTTGTAATTTTCGGCTTC
ATTGAATAATAATTTAGAAGTTTTTAATTA

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Crispr_ID: LR215979_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR215979_4

1271511-1272119

Orphan

Consensus_repeat	Method
GTAGAATATTAACTCAGAAGTCTTTAAAT	PILER-CR
GTAGAATATTAACTCAGAAGTCTTTAAAT	CRISPRCasFinder
GTAGAATATTAACTCAGAAGTCTTTAAAT	CRT

9 spacers

The CRISPR arrays of LR215979_4

>merge|LR215979|4|1271511-1272119|PILER-CR,CRISPRCasFinder,CRT
GTAGAATATTAACTCAGAAGTCTTTAAATAGATTTAACAAAAAATTCTTTAAATATAAATTTTAGTAGAATATTAACTCAGAAGTCTTTAAATGTTCTTTTTTTTTATAAAAATTTGCTCTTGACAAGTAGAATATTAACTCAGAAGTCTTTAAATAATGATTCAATTATTAAACGGAGATGCTGTTGAAGAGTAGAATATTAACTCAGAAGTCTTTAAATTGAGTAATAGTCGTTGCTGCCTGATTGTGTGCACTTGTAGAATATTAACTCAGAAGTCTTTAAATATGACCTTAGTCCATTAAAAGCTACCATTTTAACTGTAGAATATTAACTCAGAAGTCTTTAAATCAGATTTTTTAATAGGTCCTTTTTCCACTAGTACAGGTAGAATATTAACTCAGAAGTCTTTAAATATTGTTAAATTATCACCTACTATTATTCTTCCTAATGTAGAATATTAACTCAGAAGTCTTTAAATTACAGGAAGCTTAGTTTTATGCAAAGTAAGCAATTGTAGAATATTAACTCAGAAGTCTTTAAATTTTTTATCAACACCTAGAGAAGCTATGTATTTTAAAGTAGAATATTAACTCAGAAGTCTTTAAAT

>LR215979|4|2|1271511-1272119|PILER-CR
GTAGAATATTAACTCAGAAGTCTTTAAAT	AGATTTAACAAAAAATTCTTTAAATATAAATTTTA
GTAGAATATTAACTCAGAAGTCTTTAAAT	GTTCTTTTTTTTTATAAAAATTTGCTCTTGACAA
GTAGAATATTAACTCAGAAGTCTTTAAAT	AATGATTCAATTATTAAACGGAGATGCTGTTGAAGA
GTAGAATATTAACTCAGAAGTCTTTAAAT	TGAGTAATAGTCGTTGCTGCCTGATTGTGTGCACTT
GTAGAATATTAACTCAGAAGTCTTTAAAT	ATGACCTTAGTCCATTAAAAGCTACCATTTTAACT
GTAGAATATTAACTCAGAAGTCTTTAAAT	CAGATTTTTTAATAGGTCCTTTTTCCACTAGTACAG
GTAGAATATTAACTCAGAAGTCTTTAAAT	ATTGTTAAATTATCACCTACTATTATTCTTCCTAAT
GTAGAATATTAACTCAGAAGTCTTTAAAT	TACAGGAAGCTTAGTTTTATGCAAAGTAAGCAATT
GTAGAATATTAACTCAGAAGTCTTTAAAT	TTTTTATCAACACCTAGAGAAGCTATGTATTTTAAA
GTAGAATATTAACTCAGAAGTCTTTAAAT

>LR215979|4|4|1271511-1272119|CRISPRCasFinder
GTAGAATATTAACTCAGAAGTCTTTAAAT	AGATTTAACAAAAAATTCTTTAAATATAAATTTTA
GTAGAATATTAACTCAGAAGTCTTTAAAT	GTTCTTTTTTTTTATAAAAATTTGCTCTTGACAA
GTAGAATATTAACTCAGAAGTCTTTAAAT	AATGATTCAATTATTAAACGGAGATGCTGTTGAAGA
GTAGAATATTAACTCAGAAGTCTTTAAAT	TGAGTAATAGTCGTTGCTGCCTGATTGTGTGCACTT
GTAGAATATTAACTCAGAAGTCTTTAAAT	ATGACCTTAGTCCATTAAAAGCTACCATTTTAACT
GTAGAATATTAACTCAGAAGTCTTTAAAT	CAGATTTTTTAATAGGTCCTTTTTCCACTAGTACAG
GTAGAATATTAACTCAGAAGTCTTTAAAT	ATTGTTAAATTATCACCTACTATTATTCTTCCTAAT
GTAGAATATTAACTCAGAAGTCTTTAAAT	TACAGGAAGCTTAGTTTTATGCAAAGTAAGCAATT
GTAGAATATTAACTCAGAAGTCTTTAAAT	TTTTTATCAACACCTAGAGAAGCTATGTATTTTAAA
GTAGAATATTAACTCAGAAGTCTTTAAAT

>LR215979|4|2|1271511-1272119|CRT
GTAGAATATTAACTCAGAAGTCTTTAAAT	AGATTTAACAAAAAATTCTTTAAATATAAATTTTA
GTAGAATATTAACTCAGAAGTCTTTAAAT	GTTCTTTTTTTTTATAAAAATTTGCTCTTGACAA
GTAGAATATTAACTCAGAAGTCTTTAAAT	AATGATTCAATTATTAAACGGAGATGCTGTTGAAGA
GTAGAATATTAACTCAGAAGTCTTTAAAT	TGAGTAATAGTCGTTGCTGCCTGATTGTGTGCACTT
GTAGAATATTAACTCAGAAGTCTTTAAAT	ATGACCTTAGTCCATTAAAAGCTACCATTTTAACT
GTAGAATATTAACTCAGAAGTCTTTAAAT	CAGATTTTTTAATAGGTCCTTTTTCCACTAGTACAG
GTAGAATATTAACTCAGAAGTCTTTAAAT	ATTGTTAAATTATCACCTACTATTATTCTTCCTAAT
GTAGAATATTAACTCAGAAGTCTTTAAAT	TACAGGAAGCTTAGTTTTATGCAAAGTAAGCAATT
GTAGAATATTAACTCAGAAGTCTTTAAAT	TTTTTATCAACACCTAGAGAAGCTATGTATTTTAAA
GTAGAATATTAACTCAGAAGTCTTTAAAT

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Crispr_ID: LR215979_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR215979_5

1594312-1594791

Orphan

Consensus_repeat	Method
ATTGAATATCAACTGATAAGTTTTTAAAT	PILER-CR
ATTGAATATCAACTGATAAGTTTTTAAAT	CRISPRCasFinder
ATTGAATATCAACTGATAAGTTTTTAAAT	CRT

7 spacers

The CRISPR arrays of LR215979_5

>merge|LR215979|5|1594312-1594791|PILER-CR,CRISPRCasFinder,CRT
ATTGAATATCAACTGATAAGTTTTTAAATTTTCCTCCTAAAAATATAATCTCTTCTGGTTTTTCTATTGAATATCAACTGATAAGTTTTTAAATGCATGTTTTTTTCCTATACTTCCAGCTTTATGACACATTGAATATCAACTGATAAGTTTTTAAATGAAAAATTAAATAATATAGTGGAAAAAACTAGAAAAATTGAATATCAACTGATAAGTTTTTAAATAAAAGTTTATGAAGAATTTAACGAGCTTGATAACATTGAATATCAACTGATAAGTTTTTAAATGAAAAAGATATGATGATTATGCATGGAATAATGATGGATTGAATATCAACTGATAAGTTTTTAAATTGCATTAAGTAACAGATTAATCTCTCAAGAAGAGAAATTGAATATCAACTGATAAGTTTTTAAATTAAGTTTGAAGCCTTTTTTTACAAGAACAATAGATTGAATATCAACTGATAAGTTTTTAAAT

>LR215979|5|3|1594312-1594791|PILER-CR
ATTGAATATCAACTGATAAGTTTTTAAAT	TTTCCTCCTAAAAATATAATCTCTTCTGGTTTTTCT
ATTGAATATCAACTGATAAGTTTTTAAAT	GCATGTTTTTTTCCTATACTTCCAGCTTTATGACAC
ATTGAATATCAACTGATAAGTTTTTAAAT	GAAAAATTAAATAATATAGTGGAAAAAACTAGAAAA
ATTGAATATCAACTGATAAGTTTTTAAAT	AAAAGTTTATGAAGAATTTAACGAGCTTGATAAC
ATTGAATATCAACTGATAAGTTTTTAAAT	GAAAAAGATATGATGATTATGCATGGAATAATGATGG
ATTGAATATCAACTGATAAGTTTTTAAAT	TGCATTAAGTAACAGATTAATCTCTCAAGAAGAGAA
ATTGAATATCAACTGATAAGTTTTTAAAT	TAAGTTTGAAGCCTTTTTTTACAAGAACAATAG
ATTGAATATCAACTGATAAGTTTTTAAAT

>LR215979|5|5|1594312-1594791|CRISPRCasFinder
ATTGAATATCAACTGATAAGTTTTTAAAT	TTTCCTCCTAAAAATATAATCTCTTCTGGTTTTTCT
ATTGAATATCAACTGATAAGTTTTTAAAT	GCATGTTTTTTTCCTATACTTCCAGCTTTATGACAC
ATTGAATATCAACTGATAAGTTTTTAAAT	GAAAAATTAAATAATATAGTGGAAAAAACTAGAAAA
ATTGAATATCAACTGATAAGTTTTTAAAT	AAAAGTTTATGAAGAATTTAACGAGCTTGATAAC
ATTGAATATCAACTGATAAGTTTTTAAAT	GAAAAAGATATGATGATTATGCATGGAATAATGATGG
ATTGAATATCAACTGATAAGTTTTTAAAT	TGCATTAAGTAACAGATTAATCTCTCAAGAAGAGAA
ATTGAATATCAACTGATAAGTTTTTAAAT	TAAGTTTGAAGCCTTTTTTTACAAGAACAATAG
ATTGAATATCAACTGATAAGTTTTTAAAT

>LR215979|5|3|1594312-1594791|CRT
ATTGAATATCAACTGATAAGTTTTTAAAT	TTTCCTCCTAAAAATATAATCTCTTCTGGTTTTTCT
ATTGAATATCAACTGATAAGTTTTTAAAT	GCATGTTTTTTTCCTATACTTCCAGCTTTATGACAC
ATTGAATATCAACTGATAAGTTTTTAAAT	GAAAAATTAAATAATATAGTGGAAAAAACTAGAAAA
ATTGAATATCAACTGATAAGTTTTTAAAT	AAAAGTTTATGAAGAATTTAACGAGCTTGATAAC
ATTGAATATCAACTGATAAGTTTTTAAAT	GAAAAAGATATGATGATTATGCATGGAATAATGATGG
ATTGAATATCAACTGATAAGTTTTTAAAT	TGCATTAAGTAACAGATTAATCTCTCAAGAAGAGAA
ATTGAATATCAACTGATAAGTTTTTAAAT	TAAGTTTGAAGCCTTTTTTTACAAGAACAATAG
ATTGAATATCAACTGATAAGTTTTTAAAT

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Crispr_ID: LR215979_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR215979_6

3576307-3576489

Orphan

Consensus_repeat	Method
ACAATGACTGCAGGATAACACTTGGAAATAATA	PILER-CR

2 spacers

The CRISPR arrays of LR215979_6

>merge|LR215979|6|3576307-3576489|PILER-CR
TAACAGTTGGAAATAATAGTATTGGAATCTATGGAAAAGATTTAAATGGAGGCTCAATTACTCAAACTGGAACTACAATGACTGCAGGAGATAATGGAGTTGGTGTATATGGAACTGGTACAGGTACTGGAACAGAAAATATCAATTTGACAATGACTGCAGGAATAACACTTGGAAATAATA

>LR215979|6|4|3576307-3576489|PILER-CR
TAACAGTTGGAAATAATAGTATTGGAATCTATGG	AAAAGATTTAAATGGAGGCTCAATTACTCAAACTGGAACTACAATGACTGCAGGAG
ATAATGGAGTTGGTGTATATGGAACTGGTACAGG	TACTGGAACAGAAAATATCAATTTGACAATGACTGCAGGAATAACACTTGGAAATAATAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LR215979_4	4.6\|1271861\|36\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271861-1271896	36	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	98827-98862	6	0.833
LR215979_4	4.6\|1271861\|36\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271861-1271896	36	MH078572	Staphylococcus phage phiSA_BS1, complete genome	53679-53714	6	0.833
LR215979_3	3.1\|601078\|35\|LR215979\|PILER-CR	601078-601112	35	MN694611	Marine virus AFVG_250M767, complete genome	52779-52813	7	0.8
LR215979_5	5.7\|1594730\|33\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594730-1594762	33	NZ_CP034838	Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence	66828-66860	7	0.788
LR215979_5	5.7\|1594730\|33\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594730-1594762	33	NZ_CP034838	Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence	68178-68210	7	0.788
LR215979_5	5.7\|1594730\|33\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594730-1594762	33	NZ_CP034839	Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence	66828-66860	7	0.788
LR215979_5	5.7\|1594730\|33\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594730-1594762	33	NZ_CP034839	Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence	68178-68210	7	0.788
LR215979_4	4.1\|1271540\|35\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271540-1271574	35	NC_017421	Borreliella burgdorferi N40 plasmid N40_lp38, complete sequence	35474-35508	8	0.771
LR215979_4	4.1\|1271540\|35\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271540-1271574	35	NC_001856	Borreliella burgdorferi B31 plasmid lp38, complete sequence	36264-36298	8	0.771
LR215979_4	4.1\|1271540\|35\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271540-1271574	35	NZ_CP019853	Borreliella burgdorferi plasmid lp38, complete sequence	36277-36311	8	0.771
LR215979_4	4.1\|1271540\|35\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271540-1271574	35	NZ_CP019764	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence	36270-36304	8	0.771
LR215979_5	5.4\|1594536\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594536-1594569	34	MH937499	Streptococcus phage CHPC1062, complete genome	20889-20922	8	0.765
LR215979_5	5.4\|1594536\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594536-1594569	34	MH937495	Streptococcus phage CHPC1045, complete genome	20526-20559	8	0.765
LR215979_5	5.4\|1594536\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594536-1594569	34	MH937493	Streptococcus phage CHPC1041, complete genome	21067-21100	8	0.765
LR215979_5	5.4\|1594536\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594536-1594569	34	KT717084	Streptococcus phage 53, complete genome	21154-21187	8	0.765
LR215979_5	5.4\|1594536\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594536-1594569	34	MH892363	Streptococcus phage SW14, complete genome	22024-22057	8	0.765
LR215979_5	5.4\|1594536\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594536-1594569	34	MH937506	Streptococcus phage CHPC1148, complete genome	19898-19931	8	0.765
LR215979_5	5.7\|1594730\|33\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594730-1594762	33	NC_015386	Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence	82795-82827	8	0.758
LR215979_3	3.3\|601209\|34\|LR215979\|PILER-CR	601209-601242	34	NC_019777	Cyanobacterium aponinum PCC 10605 plasmid pCYAN10605.01, complete sequence	38815-38848	9	0.735
LR215979_3	3.4\|601076\|37\|LR215979\|CRISPRCasFinder	601076-601112	37	MN694611	Marine virus AFVG_250M767, complete genome	52777-52813	9	0.757
LR215979_4	4.1\|1271540\|35\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271540-1271574	35	NZ_CP014284	Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence	23125-23159	9	0.743
LR215979_4	4.1\|1271540\|35\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271540-1271574	35	NZ_CP032609	Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence	110741-110775	9	0.743
LR215979_4	4.2\|1271604\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271604-1271637	34	MN694426	Marine virus AFVG_250M547, complete genome	36123-36156	9	0.735
LR215979_4	4.2\|1271604\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271604-1271637	34	KX833905	Lactococcus phage PLg-TB25, complete genome	32845-32878	9	0.735
LR215979_4	4.2\|1271604\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271604-1271637	34	KJ489399	Bacillus phage Hakuna, complete genome	25469-25502	9	0.735
LR215979_4	4.2\|1271604\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271604-1271637	34	NC_031027	Bacillus phage SageFayge, complete genome	26682-26715	9	0.735
LR215979_4	4.2\|1271604\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271604-1271637	34	MF288919	Bacillus phage AaronPhadgers, complete genome	26783-26816	9	0.735
LR215979_4	4.2\|1271604\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271604-1271637	34	KX349902	Bacillus phage Kida, complete genome	26293-26326	9	0.735
LR215979_4	4.2\|1271604\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271604-1271637	34	KX156152	Bacillus phage Smudge, complete genome	26795-26828	9	0.735
LR215979_4	4.2\|1271604\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271604-1271637	34	KU737351	Bacillus phage NotTheCreek, complete genome	26581-26614	9	0.735
LR215979_5	5.4\|1594536\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594536-1594569	34	NZ_CP013206	Paenibacillus sp. IHB B 3084 plasmid pHD03, complete sequence	2460-2493	9	0.735
LR215979_5	5.4\|1594536\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1594536-1594569	34	MH937457	Streptococcus phage CHPC1248, complete genome	21553-21586	9	0.735
LR215979_4	4.1\|1271540\|35\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271540-1271574	35	NZ_CP040856	Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence	10854-10888	10	0.714
LR215979_4	4.1\|1271540\|35\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271540-1271574	35	NC_009018	Streptococcus phage phi3396, complete genome	5640-5674	10	0.714
LR215979_4	4.2\|1271604\|34\|LR215979\|PILER-CR,CRISPRCasFinder,CRT	1271604-1271637	34	MN698240	Pelagibacter phage HTVC026P, complete genome	8305-8338	10	0.706
LR215979_3	3.8\|601077\|36\|LR215979\|CRT	601077-601112	36	MN694611	Marine virus AFVG_250M767, complete genome	52777-52812	11	0.694

1. spacer 4.6|1271861|36|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 6, identity: 0.833

cagattttttaataggtcctttttccacta-gtacag	CRISPR spacer
cagattctttaataagtcctttttccacaacattca-	Protospacer
******.*******.************* * .* **

2. spacer 4.6|1271861|36|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 6, identity: 0.833

cagattttttaataggtcctttttccacta-gtacag	CRISPR spacer
cagattctttaataagtcctttttccacaacattca-	Protospacer
******.*******.************* * .* **

3. spacer 3.1|601078|35|LR215979|PILER-CR matches to MN694611 (Marine virus AFVG_250M767, complete genome) position: , mismatch: 7, identity: 0.8

-aaagtatacttaaatctaaatggaataagtttaaa	CRISPR spacer
cagaatctg-ttaaatctaaatggagtaaatttaaa	Protospacer
 *.*.* *. ***************.***.******

4. spacer 5.7|1594730|33|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 7, identity: 0.788

taagtttgaagcctttttttacaagaacaatag	CRISPR spacer
tttatttgaagcctttttttacaaaaaaaatct	Protospacer
*  .********************.** ***

5. spacer 5.7|1594730|33|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 7, identity: 0.788

taagtttgaagcctttttttacaagaacaatag	CRISPR spacer
tttatttgaagcctttttttacaaaaaaaatct	Protospacer
*  .********************.** ***

6. spacer 5.7|1594730|33|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 7, identity: 0.788

taagtttgaagcctttttttacaagaacaatag	CRISPR spacer
tttatttgaagcctttttttacaaaaaaaatct	Protospacer
*  .********************.** ***

7. spacer 5.7|1594730|33|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 7, identity: 0.788

taagtttgaagcctttttttacaagaacaatag	CRISPR spacer
tttatttgaagcctttttttacaaaaaaaatct	Protospacer
*  .********************.** ***

8. spacer 4.1|1271540|35|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NC_017421 (Borreliella burgdorferi N40 plasmid N40_lp38, complete sequence) position: , mismatch: 8, identity: 0.771

agatttaacaaaaaattctttaaatataaatttta	CRISPR spacer
atatagcacaaaaaattctttatatatatatttct	Protospacer
* **   *************** ***** ****.

9. spacer 4.1|1271540|35|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NC_001856 (Borreliella burgdorferi B31 plasmid lp38, complete sequence) position: , mismatch: 8, identity: 0.771

agatttaacaaaaaattctttaaatataaatttta	CRISPR spacer
atatagcacaaaaaattctttatatatatatttct	Protospacer
* **   *************** ***** ****.

10. spacer 4.1|1271540|35|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019853 (Borreliella burgdorferi plasmid lp38, complete sequence) position: , mismatch: 8, identity: 0.771

agatttaacaaaaaattctttaaatataaatttta	CRISPR spacer
atatagcacaaaaaattctttatatatatatttct	Protospacer
* **   *************** ***** ****.

11. spacer 4.1|1271540|35|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019764 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp38, complete sequence) position: , mismatch: 8, identity: 0.771

agatttaacaaaaaattctttaaatataaatttta	CRISPR spacer
atatagcacaaaaaattctttatatatatatttct	Protospacer
* **   *************** ***** ****.

12. spacer 5.4|1594536|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to MH937499 (Streptococcus phage CHPC1062, complete genome) position: , mismatch: 8, identity: 0.765

----aaaagtttatgaagaatttaacgagcttgataac	CRISPR spacer
tgcggaaa----atgaaaaatttaacgagcttgataca	Protospacer
    .***    *****.******************

13. spacer 5.4|1594536|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to MH937495 (Streptococcus phage CHPC1045, complete genome) position: , mismatch: 8, identity: 0.765

----aaaagtttatgaagaatttaacgagcttgataac	CRISPR spacer
tgcggaaa----atgaaaaatttaatgagcttgataaa	Protospacer
    .***    *****.*******.***********

14. spacer 5.4|1594536|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to MH937493 (Streptococcus phage CHPC1041, complete genome) position: , mismatch: 8, identity: 0.765

----aaaagtttatgaagaatttaacgagcttgataac	CRISPR spacer
tgctgaaa----atgaaaaatttaacgatcttgataaa	Protospacer
    .***    *****.********** ********

15. spacer 5.4|1594536|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to KT717084 (Streptococcus phage 53, complete genome) position: , mismatch: 8, identity: 0.765

----aaaagtttatgaagaatttaacgagcttgataac	CRISPR spacer
tgcggaaa----atgaaaaatttaatgagcttgataaa	Protospacer
    .***    *****.*******.***********

16. spacer 5.4|1594536|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to MH892363 (Streptococcus phage SW14, complete genome) position: , mismatch: 8, identity: 0.765

----aaaagtttatgaagaatttaacgagcttgataac	CRISPR spacer
tgctgaaa----atgaaaaatttaacgatcttgataaa	Protospacer
    .***    *****.********** ********

17. spacer 5.4|1594536|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 8, identity: 0.765

----aaaagtttatgaagaatttaacgagcttgataac	CRISPR spacer
tgctgaaa----atgaaaaatttaacgatcttgataaa	Protospacer
    .***    *****.********** ********

18. spacer 5.7|1594730|33|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NC_015386 (Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence) position: , mismatch: 8, identity: 0.758

taagtttgaagcctttttttacaagaacaatag	CRISPR spacer
taagttttatgcctttttttacaaaagtatatg	Protospacer
******* * **************.*..*   *

19. spacer 3.3|601209|34|LR215979|PILER-CR matches to NC_019777 (Cyanobacterium aponinum PCC 10605 plasmid pCYAN10605.01, complete sequence) position: , mismatch: 9, identity: 0.735

ataaactaaggcttgaatggtcggaagccgaaac	CRISPR spacer
attaactaaggcttgaattgtcggtaaatcaatt	Protospacer
** *************** ***** *. . ** .

20. spacer 3.4|601076|37|LR215979|CRISPRCasFinder matches to MN694611 (Marine virus AFVG_250M767, complete genome) position: , mismatch: 9, identity: 0.757

-aaagtatacttaaatctaaatggaataagtttaaaaa	CRISPR spacer
cagaatctg-ttaaatctaaatggagtaaatttaaacc	Protospacer
 *.*.* *. ***************.***.******

21. spacer 4.1|1271540|35|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014284 (Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence) position: , mismatch: 9, identity: 0.743

agatttaacaaaaaattctttaaatataaatttta	CRISPR spacer
aattctttcaaaaaattcgttaaaaataaatttcc	Protospacer
*. *.*  ********** ***** ********.

22. spacer 4.1|1271540|35|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032609 (Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence) position: , mismatch: 9, identity: 0.743

agatttaacaaaaaattctttaaatataaatttta	CRISPR spacer
aattctttcaaaaaattcgttaaaaataaatttcc	Protospacer
*. *.*  ********** ***** ********.

23. spacer 4.2|1271604|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to MN694426 (Marine virus AFVG_250M547, complete genome) position: , mismatch: 9, identity: 0.735

gttctttttttttataaaaatttgctcttgacaa	CRISPR spacer
gggctttttttttataaaattttgcttttttagt	Protospacer
*  **************** ******.**   .

24. spacer 4.2|1271604|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to KX833905 (Lactococcus phage PLg-TB25, complete genome) position: , mismatch: 9, identity: 0.735

gttctttttttttataaaaatttgctcttgacaa-----	CRISPR spacer
tttttttatttttataaaaatttgct-----taaactct	Protospacer
 **.*** ******************     .**

25. spacer 4.2|1271604|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to KJ489399 (Bacillus phage Hakuna, complete genome) position: , mismatch: 9, identity: 0.735

gttctttttttttataaaaatttgctcttgacaa	CRISPR spacer
gttctttttttttgtaaaaatatgttgcatttaa	Protospacer
*************.******* **.* .   .**

26. spacer 4.2|1271604|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NC_031027 (Bacillus phage SageFayge, complete genome) position: , mismatch: 9, identity: 0.735

gttctttttttttataaaaatttgctcttgacaa	CRISPR spacer
gttctttttttttgtaaaaatatgttgcatttaa	Protospacer
*************.******* **.* .   .**

27. spacer 4.2|1271604|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to MF288919 (Bacillus phage AaronPhadgers, complete genome) position: , mismatch: 9, identity: 0.735

gttctttttttttataaaaatttgctcttgacaa	CRISPR spacer
gttctttttttttgtaaaaatatgttgcatttaa	Protospacer
*************.******* **.* .   .**

28. spacer 4.2|1271604|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to KX349902 (Bacillus phage Kida, complete genome) position: , mismatch: 9, identity: 0.735

gttctttttttttataaaaatttgctcttgacaa	CRISPR spacer
gttctttttttttgtaaaaatatgttgcatttaa	Protospacer
*************.******* **.* .   .**

29. spacer 4.2|1271604|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to KX156152 (Bacillus phage Smudge, complete genome) position: , mismatch: 9, identity: 0.735

gttctttttttttataaaaatttgctcttgacaa	CRISPR spacer
gttctttttttttgtaaaaatatgttgcatttaa	Protospacer
*************.******* **.* .   .**

30. spacer 4.2|1271604|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to KU737351 (Bacillus phage NotTheCreek, complete genome) position: , mismatch: 9, identity: 0.735

gttctttttttttataaaaatttgctcttgacaa	CRISPR spacer
gttctttttttttgtaaaaatatgttgcatttaa	Protospacer
*************.******* **.* .   .**

31. spacer 5.4|1594536|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013206 (Paenibacillus sp. IHB B 3084 plasmid pHD03, complete sequence) position: , mismatch: 9, identity: 0.735

aaaagtttatgaagaatttaacgagcttgataac	CRISPR spacer
atcgctggatgaggaatttaaggagcttgataag	Protospacer
*  . *  ****.******** ***********

32. spacer 5.4|1594536|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to MH937457 (Streptococcus phage CHPC1248, complete genome) position: , mismatch: 9, identity: 0.735

----aaaagtttatgaagaatttaacgagcttgataac	CRISPR spacer
tgcggaaa----atgagaaatttaacgagcttgataca	Protospacer
    .***    ****..******************

33. spacer 4.1|1271540|35|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040856 (Lactobacillus johnsonii strain G2A plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

agatttaacaaaaaattctttaaatataaatttta	CRISPR spacer
atttttaaataaaaattctttaaatatagaaaagt	Protospacer
*  *****  ******************.*

34. spacer 4.1|1271540|35|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to NC_009018 (Streptococcus phage phi3396, complete genome) position: , mismatch: 10, identity: 0.714

agatttaacaaaaaattctttaaatataaatttta	CRISPR spacer
ttttccattaaaaaattcttttaatataacttttt	Protospacer
   *..* .************ ******* ****

35. spacer 4.2|1271604|34|LR215979|PILER-CR,CRISPRCasFinder,CRT matches to MN698240 (Pelagibacter phage HTVC026P, complete genome) position: , mismatch: 10, identity: 0.706

gttctttttttttataaaaatttgctcttgacaa	CRISPR spacer
attctttttttttctaaacatttgcttatagatg	Protospacer
.************ **** *******. *..  .

36. spacer 3.8|601077|36|LR215979|CRT matches to MN694611 (Marine virus AFVG_250M767, complete genome) position: , mismatch: 11, identity: 0.694

aagtatacttaaatctaaatggaataagtttaaaaa	CRISPR spacer
agaatctgttaaatctaaatggagtaaatttaaacc	Protospacer
*..  .  ***************.***.******

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR215979

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection