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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LR216023 Streptococcus pneumoniae strain 2245STDY5699475 genome assembly, chromosome: 1 1 crisprs DEDDh,PrimPol,RT,cas3,DinG 0 0 16 0

Results visualization

1. LR216023
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR216023_1 94861-94956 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 4185 : 52812 43 uncultured_virus(12.5%) bacteriocin,transposase,tRNA NA
DBSCAN-SWA_2 103374 : 193606 96 Streptococcus_phage(39.13%) bacteriocin,transposase,tRNA,protease,integrase attL 183877:183901|attR 196440:196464
DBSCAN-SWA_3 288701 : 337681 52 Streptococcus_phage(28.57%) protease,integrase,transposase attL 279418:279437|attR 329526:329545
DBSCAN-SWA_4 356456 : 401378 38 Aeribacillus_phage(16.67%) integrase,holin,transposase,tRNA attL 385547:385562|attR 391627:391642
DBSCAN-SWA_5 414652 : 483091 60 Planktothrix_phage(22.22%) protease,integrase,transposase,tRNA attL 480371:480430|attR 484448:485247
DBSCAN-SWA_6 505062 : 534869 34 Bodo_saltans_virus(25.0%) protease,bacteriocin,transposase,tRNA NA
DBSCAN-SWA_7 601199 : 653813 43 Staphylococcus_prophage(25.0%) bacteriocin,transposase,tRNA,protease,holin NA
DBSCAN-SWA_8 729888 : 812012 90 Streptococcus_phage(23.33%) protease,transposase,tRNA NA
DBSCAN-SWA_9 851134 : 886555 39 Streptococcus_phage(57.14%) protease,holin,transposase NA
DBSCAN-SWA_10 952805 : 1036545 88 Streptococcus_phage(21.05%) holin,transposase,tRNA NA
DBSCAN-SWA_11 1076788 : 1120915 28 Bacillus_virus(20.0%) protease,transposase NA
DBSCAN-SWA_12 1151509 : 1211134 60 Bacillus_phage(20.0%) protease,bacteriocin,holin,tRNA NA
DBSCAN-SWA_13 1325878 : 1367087 49 Streptococcus_phage(21.43%) transposase,tRNA NA
DBSCAN-SWA_14 1431384 : 1438138 9 Streptococcus_phage(50.0%) protease NA
DBSCAN-SWA_15 1720215 : 1776677 53 Streptococcus_phage(40.0%) integrase,holin,transposase attL 1731096:1731123|attR 1753712:1753739
DBSCAN-SWA_16 2053393 : 2090962 37 Streptococcus_phage(50.0%) protease,holin,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage