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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LR216050 Streptococcus pneumoniae isolate GPS_US_PATH396-sc-2296505 genome assembly, chromosome: 1 2 crisprs PrimPol,cas3,DinG,DEDDh,RT 0 0 17 0

Results visualization

1. LR216050
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR216050_1 85664-85759 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR216050_3 1616626-1616710 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 714 : 25182 38 Streptococcus_phage(71.43%) transposase,integrase,bacteriocin attL 3764:3779|attR 10017:10032
DBSCAN-SWA_2 30721 : 42032 7 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 70328 : 117118 51 Streptococcus_phage(50.0%) transposase,bacteriocin,tRNA NA
DBSCAN-SWA_4 250111 : 369376 115 Enterobacteria_phage(15.0%) integrase,transposase,tRNA,holin,protease attL 241965:241981|attR 266770:266786
DBSCAN-SWA_5 385888 : 494403 103 Bacillus_phage(16.67%) transposase,integrase,bacteriocin,tRNA,protease attL 452779:452811|attR 505532:505564
DBSCAN-SWA_6 670923 : 783055 106 Streptococcus_phage(16.13%) transposase,integrase,tRNA,protease attL 763095:763154|attR 766515:766999
DBSCAN-SWA_7 793801 : 840325 54 Streptococcus_phage(45.0%) holin,transposase,tRNA,protease NA
DBSCAN-SWA_8 896460 : 917163 22 Streptococcus_phage(100.0%) protease NA
DBSCAN-SWA_9 1001802 : 1060139 46 Streptococcus_phage(46.15%) transposase,protease NA
DBSCAN-SWA_10 1115805 : 1180037 60 Bacillus_phage(18.75%) holin,bacteriocin,tRNA,protease NA
DBSCAN-SWA_11 1203758 : 1229074 27 Bacillus_phage(50.0%) transposase,protease NA
DBSCAN-SWA_12 1318582 : 1353289 43 Streptococcus_phage(23.08%) transposase,tRNA NA
DBSCAN-SWA_13 1425468 : 1432222 9 Streptococcus_phage(50.0%) protease NA
DBSCAN-SWA_14 1681424 : 1688756 9 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_15 1843294 : 1891839 41 Bacillus_phage(30.77%) transposase,tRNA NA
DBSCAN-SWA_16 1938881 : 2014432 58 Klosneuvirus(11.11%) holin,transposase,protease NA
DBSCAN-SWA_17 2037051 : 2045805 9 Bacillus_phage(33.33%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage