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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LR216060 Streptococcus pneumoniae strain 2245STDY6178787 genome assembly, chromosome: 1 2 crisprs DEDDh,PrimPol,cas3,DinG 0 0 22 0

Results visualization

1. LR216060
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR216060_1 107283-107378 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR216060_3 1340116-1340198 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 780 : 43624 56 Streptococcus_phage(91.67%) transposase,tail,holin,integrase,portal,protease,terminase,head,capsid attL 967:1026|attR 42402:42473
DBSCAN-SWA_2 53224 : 64680 7 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 115760 : 150135 35 Planktothrix_phage(33.33%) bacteriocin,protease,tRNA NA
DBSCAN-SWA_4 238930 : 337909 92 Staphylococcus_phage(15.79%) integrase,protease,transposase,tRNA attL 269731:269750|attR 329823:329842
DBSCAN-SWA_5 354042 : 408058 45 Aeribacillus_phage(16.67%) transposase,holin,tRNA NA
DBSCAN-SWA_6 421446 : 465622 43 Streptococcus_phage(72.73%) transposase,protease,tRNA NA
DBSCAN-SWA_7 493263 : 525219 38 Bacillus_phage(28.57%) transposase,tRNA,integrase,bacteriocin,protease attL 491848:491907|attR 496528:496612
DBSCAN-SWA_8 553586 : 682751 117 Staphylococcus_phage(17.39%) transposase,tRNA,bacteriocin,protease,holin NA
DBSCAN-SWA_9 698611 : 776668 83 Streptococcus_phage(19.23%) transposase,integrase,protease,tRNA attL 739344:739392|attR 772696:772744
DBSCAN-SWA_10 798139 : 860147 56 Streptococcus_phage(27.78%) transposase,integrase attL 836851:836893|attR 857187:857229
DBSCAN-SWA_11 884952 : 894591 10 Streptococcus_phage(88.89%) holin NA
DBSCAN-SWA_12 961204 : 1009369 55 Streptococcus_phage(18.75%) transposase,tRNA NA
DBSCAN-SWA_13 1024482 : 1074307 53 Streptococcus_phage(45.45%) transposase NA
DBSCAN-SWA_14 1147888 : 1204704 55 Bacillus_phage(20.0%) transposase,tRNA,bacteriocin,protease,holin NA
DBSCAN-SWA_15 1208307 : 1242592 41 Indivirus(20.0%) transposase,bacteriocin,holin NA
DBSCAN-SWA_16 1304228 : 1371199 58 Streptococcus_phage(75.0%) transposase,bacteriocin,protease NA
DBSCAN-SWA_17 1419891 : 1468765 55 Streptococcus_phage(31.25%) integrase,bacteriocin,transposase,tRNA attL 1415644:1415666|attR 1469103:1469125
DBSCAN-SWA_18 1539294 : 1546048 9 Streptococcus_phage(50.0%) protease NA
DBSCAN-SWA_19 1788074 : 1836527 46 Streptococcus_phage(33.33%) transposase,integrase,holin attL 1799718:1799736|attR 1822459:1822477
DBSCAN-SWA_20 1860260 : 1907397 45 Streptococcus_phage(11.11%) transposase,bacteriocin,protease NA
DBSCAN-SWA_21 2118528 : 2155865 36 Streptococcus_phage(53.85%) transposase,holin,protease NA
DBSCAN-SWA_22 2182306 : 2190592 11 Streptococcus_phage(57.14%) integrase attL 2182537:2182551|attR 2197401:2197415
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage